Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581600 | XP_003591975.1 | 97.740 | 177 | 4 | 0 | 1 | 177 | 1 | 177 | 3.75e-124 | 357 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581600 | sp|Q9FT52|ATP5H_ARATH | 80.952 | 168 | 32 | 0 | 1 | 168 | 1 | 168 | 3.24e-100 | 288 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581600 | G7I9M9 | 97.740 | 177 | 4 | 0 | 1 | 177 | 1 | 177 | 1.79e-124 | 357 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0069440 | Msa0581600 | 0.969683 | 1.745005e-130 | -8.615850e-47 |
| Msa0131490 | Msa0581600 | 0.995151 | 1.719715e-213 | -8.615850e-47 |
| Msa0131560 | Msa0581600 | 0.973578 | 1.147247e-136 | -8.615850e-47 |
| Msa0177360 | Msa0581600 | 0.956958 | 8.589423e-115 | -8.615850e-47 |
| Msa0581600 | Msa0659030 | 0.804077 | 2.568830e-49 | -8.615850e-47 |
| Msa0581600 | Msa0660590 | 0.996445 | 1.284492e-227 | -8.615850e-47 |
| Msa0581600 | Msa0705000 | 0.807204 | 5.664830e-50 | -8.615850e-47 |
| Msa0581600 | Msa0705040 | 0.809360 | 1.966475e-50 | -8.615850e-47 |
| Msa0581600 | Msa1374240 | 0.800992 | 1.111167e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581600 | MtrunA17_Chr1g0200191 | 97.740 | 177 | 4 | 0 | 1 | 177 | 1 | 177 | 3.45e-128 | 357 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581600 | AT3G52300.1 | 80.952 | 168 | 32 | 0 | 1 | 168 | 1 | 168 | 3.29e-101 | 288 |
| Msa0581600 | AT3G52300.2 | 78.704 | 108 | 23 | 0 | 1 | 108 | 1 | 108 | 8.71e-62 | 187 |
Find 49 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATAATATTCCCAGTCTA+TGG | 0.167189 | 4_1:-87097406 | None:intergenic |
| CAGTCAAGACACCCAATTTC+AGG | 0.179551 | 4_1:+87099961 | Msa0581600:three_prime_UTR |
| CTTACCAGTGCATCAAATTT+AGG | 0.208576 | 4_1:-87099405 | None:intergenic |
| GTATACATTTGTTCTGATTC+TGG | 0.223703 | 4_1:+87100032 | Msa0581600:three_prime_UTR |
| ATTTAGAAACTGTTGTCTTA+TGG | 0.283362 | 4_1:+87099935 | Msa0581600:three_prime_UTR |
| AGGAGATTAGGAACGATAAC+TGG | 0.292837 | 4_1:+87099748 | Msa0581600:CDS |
| GCTGAAGTTGGTTGAGCTTA+AGG | 0.315735 | 4_1:+87099505 | Msa0581600:intron |
| GTCCCAATCGATCTTCTTCC+CGG | 0.344356 | 4_1:-87096549 | None:intergenic |
| AATAAATTGTTGTGTTTGTC+TGG | 0.357169 | 4_1:+87100006 | Msa0581600:three_prime_UTR |
| TCTGAAAGAATCTGAACGTT+TGG | 0.374930 | 4_1:+87099544 | Msa0581600:CDS |
| AAAAGGAATTGGCACTCGTT+TGG | 0.433018 | 4_1:+87097428 | Msa0581600:CDS |
| AGCAATTTGATGAGGAGATT+AGG | 0.438102 | 4_1:+87099736 | Msa0581600:CDS |
| TCAAATTGCTTCTTCAGCTC+AGG | 0.438466 | 4_1:-87099723 | None:intergenic |
| AGTTACTGTGTCAACAAACT+TGG | 0.447924 | 4_1:-87099370 | None:intergenic |
| GACTGGGAATATTATAGAAA+AGG | 0.455154 | 4_1:+87097411 | Msa0581600:CDS |
| GAATATTATAGAAAAGGAAT+TGG | 0.458956 | 4_1:+87097417 | Msa0581600:CDS |
| TAAGCCTAAATTTGATGCAC+TGG | 0.467869 | 4_1:+87099401 | Msa0581600:CDS |
| AGGAGCCTGAGCCCATAGAC+TGG | 0.471648 | 4_1:+87097394 | Msa0581600:intron |
| AGAATCTGAACGTTTGGAAA+AGG | 0.472141 | 4_1:+87099550 | Msa0581600:CDS |
| CTATAATATTCCCAGTCTAT+GGG | 0.473165 | 4_1:-87097405 | None:intergenic |
| ATTTGTTCTGATTCTGGCAA+TGG | 0.477285 | 4_1:+87100038 | Msa0581600:three_prime_UTR |
| AAATTCACGACGAGCTTCAT+CGG | 0.482178 | 4_1:-87096594 | None:intergenic |
| ACAGATGTTGCATTCAAAGC+CGG | 0.489390 | 4_1:+87096530 | Msa0581600:CDS |
| GCAAGGAAAACATCAACTTC+AGG | 0.493258 | 4_1:-87099802 | None:intergenic |
| TCAAATTTAGGCTTATATTG+AGG | 0.499518 | 4_1:-87099393 | None:intergenic |
| AGGAATTGGCACTCGTTTGG+TGG | 0.500877 | 4_1:+87097431 | Msa0581600:CDS |
| CTTCTTCAGCTCAGGATGCT+CGG | 0.501457 | 4_1:-87099715 | None:intergenic |
| CAGATGTTGCATTCAAAGCC+GGG | 0.515624 | 4_1:+87096531 | Msa0581600:CDS |
| TATTCCCAGTCTATGGGCTC+AGG | 0.528775 | 4_1:-87097399 | None:intergenic |
| AAGCCGGGAAGAAGATCGAT+TGG | 0.530458 | 4_1:+87096546 | Msa0581600:CDS |
| GGAAGAAGATCGATTGGGAC+GGG | 0.534761 | 4_1:+87096552 | Msa0581600:CDS |
| AAAGTACTCATCTGCTGTCA+TGG | 0.536378 | 4_1:-87099691 | None:intergenic |
| GGAGATTAGGAACGATAACT+GGG | 0.553647 | 4_1:+87099749 | Msa0581600:CDS |
| GTTACTGTGTCAACAAACTT+GGG | 0.562398 | 4_1:-87099369 | None:intergenic |
| AGCCGGGAAGAAGATCGATT+GGG | 0.567684 | 4_1:+87096547 | Msa0581600:CDS |
| GGAGCCTGAGCCCATAGACT+GGG | 0.568751 | 4_1:+87097395 | Msa0581600:intron |
| GAAGATCGATTGGGACGGGA+TGG | 0.577380 | 4_1:+87096556 | Msa0581600:CDS |
| TGCTAATGTACAGTCGCTGA+AGG | 0.578326 | 4_1:+87099577 | Msa0581600:CDS |
| GGTTGAGCTTAAGGAAGCAG+AGG | 0.581516 | 4_1:+87099514 | Msa0581600:CDS |
| CTCTGGTAACGATAGTGTCA+AGG | 0.588551 | 4_1:+87096405 | None:intergenic |
| TATTATTTATTAAACCAGCA+AGG | 0.594786 | 4_1:-87099819 | None:intergenic |
| ACGATAGTGTCAAGGTGCGA+AGG | 0.595692 | 4_1:+87096413 | None:intergenic |
| ACTCGAAACAAAGTTCAGCC+AGG | 0.598938 | 4_1:+87096655 | Msa0581600:CDS |
| AAAGCGAAAGCGAAAATGAG+CGG | 0.621372 | 4_1:+87096491 | Msa0581600:exon |
| GGGAAGAAGATCGATTGGGA+CGG | 0.627371 | 4_1:+87096551 | Msa0581600:CDS |
| GCTGAAGAAGCAATTTGATG+AGG | 0.630857 | 4_1:+87099728 | Msa0581600:CDS |
| TTACTGTGTCAACAAACTTG+GGG | 0.648687 | 4_1:-87099368 | None:intergenic |
| AAACTATCAAAGGTCACACA+AGG | 0.675809 | 4_1:+87100099 | Msa0581600:three_prime_UTR |
| GAGATTAGGAACGATAACTG+GGG | 0.757484 | 4_1:+87099750 | Msa0581600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTAAAATTTTTTTTTTAT+TGG | + | chr4_1:87098175-87098194 | Msa0581600:intron | 0.0% |
| !! | TAAAAAAATACTAATATAAG+GGG | - | chr4_1:87097508-87097527 | None:intergenic | 10.0% |
| !! | TAAAAATGAGAAATTAATAT+AGG | + | chr4_1:87098066-87098085 | Msa0581600:intron | 10.0% |
| !!! | TTTTTTTAATCTGTATTTAA+TGG | + | chr4_1:87098299-87098318 | Msa0581600:intron | 10.0% |
| !!! | ATATATTCTAATGTAAATTT+TGG | - | chr4_1:87098868-87098887 | None:intergenic | 10.0% |
| !! | AATACATAATCTATTTGTAT+AGG | - | chr4_1:87097112-87097131 | None:intergenic | 15.0% |
| !!! | TAATTTGATAACTACATAAT+TGG | - | chr4_1:87097292-87097311 | None:intergenic | 15.0% |
| !!! | AGTATTTTTTTATTTGTCAA+TGG | + | chr4_1:87097516-87097535 | Msa0581600:intron | 15.0% |
| !!! | TACTGTAAATATTTGTATTT+TGG | - | chr4_1:87098225-87098244 | None:intergenic | 15.0% |
| !!! | AATTATTTCTCAAATTGAAA+AGG | + | chr4_1:87098924-87098943 | Msa0581600:intron | 15.0% |
| !! | AAATAACAATATATTGAATG+AGG | - | chr4_1:87099005-87099024 | None:intergenic | 15.0% |
| !!! | TACATTATTTTTTTGTAACT+TGG | + | chr4_1:87099844-87099863 | Msa0581600:three_prime_UTR | 15.0% |
| !!! | GTTTTAGTGTTTTTATTATT+AGG | - | chr4_1:87100068-87100087 | None:intergenic | 15.0% |
| !! | AATAGTTAAAAAACTATCAA+AGG | + | chr4_1:87100089-87100108 | Msa0581600:three_prime_UTR | 15.0% |
| !! | TGTAGTTATCAAATTATTAC+CGG | + | chr4_1:87097296-87097315 | Msa0581600:intron | 20.0% |
| !! | GAATATTATAGAAAAGGAAT+TGG | + | chr4_1:87097417-87097436 | Msa0581600:CDS | 20.0% |
| !! | AATAACTTGACAACAAAAAT+TGG | - | chr4_1:87098155-87098174 | None:intergenic | 20.0% |
| !! | TCATAATTATATAACTGAAC+TGG | - | chr4_1:87098614-87098633 | None:intergenic | 20.0% |
| !!! | GTTTTATAGTTGTTTTTTTC+AGG | + | chr4_1:87098701-87098720 | Msa0581600:intron | 20.0% |
| !!! | GTTAAATTTTAACATGCATT+AGG | - | chr4_1:87098844-87098863 | None:intergenic | 20.0% |
| !! | AGATATTGCCTAAATATTTA+TGG | + | chr4_1:87099220-87099239 | Msa0581600:intron | 20.0% |
| !! | AATGGTATGTAAAATTTGAA+TGG | - | chr4_1:87099305-87099324 | None:intergenic | 20.0% |
| !! | AACATCAAAAGTTGAATTAA+TGG | - | chr4_1:87099323-87099342 | None:intergenic | 20.0% |
| !!! | TTCTCAGTTTTATGTAATAT+TGG | + | chr4_1:87099621-87099640 | Msa0581600:intron | 20.0% |
| !! | TATTATTTATTAAACCAGCA+AGG | - | chr4_1:87099822-87099841 | None:intergenic | 20.0% |
| !!! | AAAAACATTTTCCTGAAATT+GGG | - | chr4_1:87099975-87099994 | None:intergenic | 20.0% |
| !! | CTTCATCATCAATTTTGAAT+TGG | + | chr4_1:87096841-87096860 | Msa0581600:intron | 25.0% |
| !!! | ATCATGTTTTAGTGCATTTT+CGG | + | chr4_1:87096873-87096892 | Msa0581600:intron | 25.0% |
| ! | GTATTCAAAACATGATGAAA+AGG | - | chr4_1:87097082-87097101 | None:intergenic | 25.0% |
| ! | TATCATTTCTTATTAATCGC+AGG | + | chr4_1:87097374-87097393 | Msa0581600:intron | 25.0% |
| ! | AGGATATTGATAAATTCAAC+TGG | + | chr4_1:87097641-87097660 | Msa0581600:intron | 25.0% |
| !!! | AGTTCAGTTTTTTTAAGGAT+CGG | - | chr4_1:87097802-87097821 | None:intergenic | 25.0% |
| !!! | CAAACAGTTCAGTTTTTTTA+AGG | - | chr4_1:87097807-87097826 | None:intergenic | 25.0% |
| !! | AAAAAGATAATCTTGATAGC+TGG | - | chr4_1:87098468-87098487 | None:intergenic | 25.0% |
| !! | AGCTATCAAGATTATCTTTT+TGG | + | chr4_1:87098467-87098486 | Msa0581600:intron | 25.0% |
| ! | AATTATGAACCATAGTTTAC+TGG | + | chr4_1:87098626-87098645 | Msa0581600:intron | 25.0% |
| ! | ATGTCTATCAATTTCAGATA+GGG | - | chr4_1:87098774-87098793 | None:intergenic | 25.0% |
| ! | AATGTCTATCAATTTCAGAT+AGG | - | chr4_1:87098775-87098794 | None:intergenic | 25.0% |
| ! | CATTAGAATATATGAAACTG+TGG | + | chr4_1:87098875-87098894 | Msa0581600:intron | 25.0% |
| ! | AAGTACATAAGAAAAGAAAC+TGG | + | chr4_1:87098947-87098966 | Msa0581600:intron | 25.0% |
| ! | TAAAACCTGGAAATTGTATA+TGG | + | chr4_1:87099043-87099062 | Msa0581600:intron | 25.0% |
| ! | GACTACATCCATAAATATTT+AGG | - | chr4_1:87099231-87099250 | None:intergenic | 25.0% |
| ! | TCAAATTTAGGCTTATATTG+AGG | - | chr4_1:87099396-87099415 | None:intergenic | 25.0% |
| !! | TTTTCTGTGAAAACAAACAA+TGG | - | chr4_1:87099662-87099681 | None:intergenic | 25.0% |
| !!! | ATTGTTTGTTTTCACAGAAA+AGG | + | chr4_1:87099661-87099680 | Msa0581600:intron | 25.0% |
| ! | ATTTAGAAACTGTTGTCTTA+TGG | + | chr4_1:87099935-87099954 | Msa0581600:three_prime_UTR | 25.0% |
| !! | CAAAAACATTTTCCTGAAAT+TGG | - | chr4_1:87099976-87099995 | None:intergenic | 25.0% |
| !!! | ATTTCAGGAAAATGTTTTTG+TGG | + | chr4_1:87099976-87099995 | Msa0581600:three_prime_UTR | 25.0% |
| ! | AATAAATTGTTGTGTTTGTC+TGG | + | chr4_1:87100006-87100025 | Msa0581600:three_prime_UTR | 25.0% |
| AGCATCTAAGAACAAAATGA+AGG | - | chr4_1:87096746-87096765 | None:intergenic | 30.0% | |
| TTGTACCTTTGTAATGATGT+TGG | + | chr4_1:87096975-87096994 | Msa0581600:intron | 30.0% | |
| TGTACCTTTGTAATGATGTT+GGG | + | chr4_1:87096976-87096995 | Msa0581600:intron | 30.0% | |
| AGATTATGTATTCAGTTACG+AGG | + | chr4_1:87097120-87097139 | Msa0581600:intron | 30.0% | |
| CTATAATATTCCCAGTCTAT+GGG | - | chr4_1:87097408-87097427 | None:intergenic | 30.0% | |
| TCTATAATATTCCCAGTCTA+TGG | - | chr4_1:87097409-87097428 | None:intergenic | 30.0% | |
| GACTGGGAATATTATAGAAA+AGG | + | chr4_1:87097411-87097430 | Msa0581600:CDS | 30.0% | |
| GTACCATTGAATACAAGAAT+CGG | - | chr4_1:87097669-87097688 | None:intergenic | 30.0% | |
| ! | TGGTACCATATTCTTTTCAT+AGG | + | chr4_1:87097683-87097702 | Msa0581600:intron | 30.0% |
| ! | GGTACCATATTCTTTTCATA+GGG | + | chr4_1:87097684-87097703 | Msa0581600:intron | 30.0% |
| TCTTCCCTATGAAAAGAATA+TGG | - | chr4_1:87097691-87097710 | None:intergenic | 30.0% | |
| !!! | TTCAGTTTTTTTAAGGATCG+GGG | - | chr4_1:87097800-87097819 | None:intergenic | 30.0% |
| !!! | GTTCAGTTTTTTTAAGGATC+GGG | - | chr4_1:87097801-87097820 | None:intergenic | 30.0% |
| !! | ACTGAACTACTTTTGAAGAA+TGG | - | chr4_1:87097880-87097899 | None:intergenic | 30.0% |
| ! | AAAGCAGTTTTACAAACAGT+TGG | + | chr4_1:87098107-87098126 | Msa0581600:intron | 30.0% |
| TGCGAATGACAAAAAGATAT+TGG | - | chr4_1:87098507-87098526 | None:intergenic | 30.0% | |
| TAAGCAAAACTGCAACTAAT+GGG | - | chr4_1:87098586-87098605 | None:intergenic | 30.0% | |
| AATTATATAACTGAACTGGC+TGG | - | chr4_1:87098610-87098629 | None:intergenic | 30.0% | |
| CTGATACTTAATAGCTTGAA+CGG | - | chr4_1:87098672-87098691 | None:intergenic | 30.0% | |
| !!! | TTGTTTTTTTCAGGTCAGTT+AGG | + | chr4_1:87098710-87098729 | Msa0581600:intron | 30.0% |
| TGTCTATCAATTTCAGATAG+GGG | - | chr4_1:87098773-87098792 | None:intergenic | 30.0% | |
| ! | ATATATGAAACTGTGGATTG+TGG | + | chr4_1:87098882-87098901 | Msa0581600:intron | 30.0% |
| ATTGAATGAGGCAAAGTTAT+AGG | - | chr4_1:87098993-87099012 | None:intergenic | 30.0% | |
| ! | TGTTATTTGACCTATTCACA+TGG | + | chr4_1:87099017-87099036 | Msa0581600:intron | 30.0% |
| GTTATTTGACCTATTCACAT+GGG | + | chr4_1:87099018-87099037 | Msa0581600:intron | 30.0% | |
| TGATACCATATACAATTTCC+AGG | - | chr4_1:87099051-87099070 | None:intergenic | 30.0% | |
| ATGCACGATTAATAAATGCA+AGG | - | chr4_1:87099130-87099149 | None:intergenic | 30.0% | |
| ! | TCGTGCATTGAATTGATTTA+AGG | + | chr4_1:87099142-87099161 | Msa0581600:intron | 30.0% |
| GGTATGTAAAATTTGAATGG+CGG | - | chr4_1:87099302-87099321 | None:intergenic | 30.0% | |
| CTTGATTGATAGAGAAAAGT+TGG | - | chr4_1:87099452-87099471 | None:intergenic | 30.0% | |
| ! | TGGTTTTTCTCCAGTTTAAA+AGG | + | chr4_1:87099864-87099883 | Msa0581600:three_prime_UTR | 30.0% |
| ! | CTGCAGTTGTCAAAATTTTA+TGG | + | chr4_1:87099899-87099918 | Msa0581600:three_prime_UTR | 30.0% |
| GTATACATTTGTTCTGATTC+TGG | + | chr4_1:87100032-87100051 | Msa0581600:three_prime_UTR | 30.0% | |
| TGTGAAGGAATTTATCTACC+TGG | - | chr4_1:87096676-87096695 | None:intergenic | 35.0% | |
| GAAATTAGAGAGATCTGTGA+AGG | - | chr4_1:87096691-87096710 | None:intergenic | 35.0% | |
| !! | TGCTAGATCGATTGACTTTT+AGG | + | chr4_1:87096762-87096781 | Msa0581600:intron | 35.0% |
| GTACCTTTGTAATGATGTTG+GGG | + | chr4_1:87096977-87096996 | Msa0581600:intron | 35.0% | |
| TTTCCCCAACATCATTACAA+AGG | - | chr4_1:87096983-87097002 | None:intergenic | 35.0% | |
| TTGTAATGATGTTGGGGAAA+TGG | + | chr4_1:87096983-87097002 | Msa0581600:intron | 35.0% | |
| ATACCAACACTTCTGTTTGA+AGG | + | chr4_1:87097207-87097226 | Msa0581600:intron | 35.0% | |
| !! | TTAGAGCATGACTTGTTTGA+TGG | + | chr4_1:87097555-87097574 | Msa0581600:intron | 35.0% |
| TCATGCACTTTCTCTTCTTT+AGG | + | chr4_1:87097604-87097623 | Msa0581600:intron | 35.0% | |
| CATGCACTTTCTCTTCTTTA+GGG | + | chr4_1:87097605-87097624 | Msa0581600:intron | 35.0% | |
| ATGCACTTTCTCTTCTTTAG+GGG | + | chr4_1:87097606-87097625 | Msa0581600:intron | 35.0% | |
| GATCCGATTCTTGTATTCAA+TGG | + | chr4_1:87097663-87097682 | Msa0581600:intron | 35.0% | |
| TAATTCACAAAAGCCATCCT+CGG | + | chr4_1:87097719-87097738 | Msa0581600:intron | 35.0% | |
| ACCAAAAAAACTGAACTGTC+CGG | + | chr4_1:87097762-87097781 | Msa0581600:intron | 35.0% | |
| TGAGATGTCAATTGTGCTAA+GGG | - | chr4_1:87098041-87098060 | None:intergenic | 35.0% | |
| ATGAGATGTCAATTGTGCTA+AGG | - | chr4_1:87098042-87098061 | None:intergenic | 35.0% | |
| CTAAGCAAAACTGCAACTAA+TGG | - | chr4_1:87098587-87098606 | None:intergenic | 35.0% | |
| TACTTTGGTCCAGTAAACTA+TGG | - | chr4_1:87098638-87098657 | None:intergenic | 35.0% | |
| GTTATAGGAAACGTTGTCAT+GGG | - | chr4_1:87098978-87098997 | None:intergenic | 35.0% | |
| AGTTATAGGAAACGTTGTCA+TGG | - | chr4_1:87098979-87098998 | None:intergenic | 35.0% | |
| !!! | GGTTTTATTCCCATGTGAAT+AGG | - | chr4_1:87099030-87099049 | None:intergenic | 35.0% |
| ATTCACATGGGAATAAAACC+TGG | + | chr4_1:87099030-87099049 | Msa0581600:intron | 35.0% | |
| ! | GTAAAATTTGAATGGCGGAA+TGG | - | chr4_1:87099297-87099316 | None:intergenic | 35.0% |
| TGATGTTATGCTTCTTCTGT+AGG | + | chr4_1:87099336-87099355 | Msa0581600:intron | 35.0% | |
| TTACTGTGTCAACAAACTTG+GGG | - | chr4_1:87099371-87099390 | None:intergenic | 35.0% | |
| GTTACTGTGTCAACAAACTT+GGG | - | chr4_1:87099372-87099391 | None:intergenic | 35.0% | |
| AGTTACTGTGTCAACAAACT+TGG | - | chr4_1:87099373-87099392 | None:intergenic | 35.0% | |
| TAAGCCTAAATTTGATGCAC+TGG | + | chr4_1:87099401-87099420 | Msa0581600:CDS | 35.0% | |
| CTTACCAGTGCATCAAATTT+AGG | - | chr4_1:87099408-87099427 | None:intergenic | 35.0% | |
| ! | ATGTGTTTTCTTGCTGAAGT+TGG | + | chr4_1:87099493-87099512 | Msa0581600:intron | 35.0% |
| TCTGAAAGAATCTGAACGTT+TGG | + | chr4_1:87099544-87099563 | Msa0581600:CDS | 35.0% | |
| AGAATCTGAACGTTTGGAAA+AGG | + | chr4_1:87099550-87099569 | Msa0581600:CDS | 35.0% | |
| AGGTAATAGAAATCACCACA+TGG | + | chr4_1:87099597-87099616 | Msa0581600:intron | 35.0% | |
| CATAAAACTGAGAAACCATG+TGG | - | chr4_1:87099615-87099634 | None:intergenic | 35.0% | |
| AGCAATTTGATGAGGAGATT+AGG | + | chr4_1:87099736-87099755 | Msa0581600:CDS | 35.0% | |
| ! | ATGTGGAGAACCTTTTAAAC+TGG | - | chr4_1:87099877-87099896 | None:intergenic | 35.0% |
| ! | TTTTGACAACTGCAGAAATG+TGG | - | chr4_1:87099894-87099913 | None:intergenic | 35.0% |
| !! | TCAGGAAAATGTTTTTGTGG+CGG | + | chr4_1:87099979-87099998 | Msa0581600:three_prime_UTR | 35.0% |
| ATTTGTTCTGATTCTGGCAA+TGG | + | chr4_1:87100038-87100057 | Msa0581600:three_prime_UTR | 35.0% | |
| AAAGCGAAAGCGAAAATGAG+CGG | + | chr4_1:87096491-87096510 | Msa0581600:exon | 40.0% | |
| ACAGATGTTGCATTCAAAGC+CGG | + | chr4_1:87096530-87096549 | Msa0581600:CDS | 40.0% | |
| AAATTCACGACGAGCTTCAT+CGG | - | chr4_1:87096597-87096616 | None:intergenic | 40.0% | |
| TATTCAGTTACGAGGCTTAG+AGG | + | chr4_1:87097128-87097147 | Msa0581600:intron | 40.0% | |
| ! | AAGCCTTCAAACAGAAGTGT+TGG | - | chr4_1:87097213-87097232 | None:intergenic | 40.0% |
| TCAGACACACTAACAAGTGT+CGG | - | chr4_1:87097245-87097264 | None:intergenic | 40.0% | |
| AAAAGGAATTGGCACTCGTT+TGG | + | chr4_1:87097428-87097447 | Msa0581600:CDS | 40.0% | |
| ! | TCTCTTCTTTAGGGGTAAAG+TGG | + | chr4_1:87097614-87097633 | Msa0581600:intron | 40.0% |
| TTTAGGGGTAAAGTGGTAGA+AGG | + | chr4_1:87097621-87097640 | Msa0581600:intron | 40.0% | |
| AAAAGCCATCCTCGGAAATT+AGG | + | chr4_1:87097727-87097746 | Msa0581600:intron | 40.0% | |
| AAAGCCATCCTCGGAAATTA+GGG | + | chr4_1:87097728-87097747 | Msa0581600:intron | 40.0% | |
| ATGAACAACCCTAATTTCCG+AGG | - | chr4_1:87097739-87097758 | None:intergenic | 40.0% | |
| !!! | TCCGGACAGTTCAGTTTTTT+TGG | - | chr4_1:87097766-87097785 | None:intergenic | 40.0% |
| TCATTCGCAAAACGTGATGA+TGG | + | chr4_1:87098518-87098537 | Msa0581600:intron | 40.0% | |
| CATTCGCAAAACGTGATGAT+GGG | + | chr4_1:87098519-87098538 | Msa0581600:intron | 40.0% | |
| ! | ATTCGCAAAACGTGATGATG+GGG | + | chr4_1:87098520-87098539 | Msa0581600:intron | 40.0% |
| ACTGGACCAAAGTACAAGTT+CGG | + | chr4_1:87098644-87098663 | Msa0581600:intron | 40.0% | |
| !! | AATTTCAGATAGGGGTGTTC+GGG | - | chr4_1:87098765-87098784 | None:intergenic | 40.0% |
| !! | CAATTTCAGATAGGGGTGTT+CGG | - | chr4_1:87098766-87098785 | None:intergenic | 40.0% |
| AGACATTCTTTCGTTGTGTC+TGG | + | chr4_1:87098788-87098807 | Msa0581600:intron | 40.0% | |
| ! | TGCTTTTGCATTGCAGAACA+CGG | - | chr4_1:87099094-87099113 | None:intergenic | 40.0% |
| ! | AAAGTACTCATCTGCTGTCA+TGG | - | chr4_1:87099694-87099713 | None:intergenic | 40.0% |
| TCAAATTGCTTCTTCAGCTC+AGG | - | chr4_1:87099726-87099745 | None:intergenic | 40.0% | |
| GCTGAAGAAGCAATTTGATG+AGG | + | chr4_1:87099728-87099747 | Msa0581600:CDS | 40.0% | |
| AGGAGATTAGGAACGATAAC+TGG | + | chr4_1:87099748-87099767 | Msa0581600:CDS | 40.0% | |
| GGAGATTAGGAACGATAACT+GGG | + | chr4_1:87099749-87099768 | Msa0581600:CDS | 40.0% | |
| GAGATTAGGAACGATAACTG+GGG | + | chr4_1:87099750-87099769 | Msa0581600:CDS | 40.0% | |
| GCAAGGAAAACATCAACTTC+AGG | - | chr4_1:87099805-87099824 | None:intergenic | 40.0% | |
| !!! | GAAGTTGATGTTTTCCTTGC+TGG | + | chr4_1:87099805-87099824 | Msa0581600:exon | 40.0% |
| CAGATGTTGCATTCAAAGCC+GGG | + | chr4_1:87096531-87096550 | Msa0581600:CDS | 45.0% | |
| ACTCGAAACAAAGTTCAGCC+AGG | + | chr4_1:87096655-87096674 | Msa0581600:CDS | 45.0% | |
| !! | CACTAACAAGTGTCGGACAT+CGG | - | chr4_1:87097238-87097257 | None:intergenic | 45.0% |
| !! | ATTACCGGTGTTGATGTGTC+AGG | + | chr4_1:87097311-87097330 | Msa0581600:intron | 45.0% |
| ACAACCCTAATTTCCGAGGA+TGG | - | chr4_1:87097735-87097754 | None:intergenic | 45.0% | |
| !! | TTTTAAGGATCGGGGCAGTT+GGG | - | chr4_1:87097792-87097811 | None:intergenic | 45.0% |
| !! | TTTTTAAGGATCGGGGCAGT+TGG | - | chr4_1:87097793-87097812 | None:intergenic | 45.0% |
| ! | TTTTGTGCGAACTGAACTGC+TGG | + | chr4_1:87097829-87097848 | Msa0581600:intron | 45.0% |
| AGAGAGAGCTGACAACAGTT+TGG | - | chr4_1:87097916-87097935 | None:intergenic | 45.0% | |
| ACGGATCCGAACTTGTACTT+TGG | - | chr4_1:87098653-87098672 | None:intergenic | 45.0% | |
| !! | ATTTCAGATAGGGGTGTTCG+GGG | - | chr4_1:87098764-87098783 | None:intergenic | 45.0% |
| CATACACAGTGAGAGAGATG+AGG | + | chr4_1:87099259-87099278 | Msa0581600:intron | 45.0% | |
| ! | GCTGAAGTTGGTTGAGCTTA+AGG | + | chr4_1:87099505-87099524 | Msa0581600:intron | 45.0% |
| TGCTAATGTACAGTCGCTGA+AGG | + | chr4_1:87099577-87099596 | Msa0581600:CDS | 45.0% | |
| CAGTCAAGACACCCAATTTC+AGG | + | chr4_1:87099961-87099980 | Msa0581600:three_prime_UTR | 45.0% | |
| !! | ATAAAAAAATACTAATATAA+GGG | - | chr4_1:87097509-87097528 | None:intergenic | 5.0% |
| !! | AATAAAAAAATACTAATATA+AGG | - | chr4_1:87097510-87097529 | None:intergenic | 5.0% |
| AAGCCGGGAAGAAGATCGAT+TGG | + | chr4_1:87096546-87096565 | Msa0581600:CDS | 50.0% | |
| AGCCGGGAAGAAGATCGATT+GGG | + | chr4_1:87096547-87096566 | Msa0581600:CDS | 50.0% | |
| GTCCCAATCGATCTTCTTCC+CGG | - | chr4_1:87096552-87096571 | None:intergenic | 50.0% | |
| GGGAAGAAGATCGATTGGGA+CGG | + | chr4_1:87096551-87096570 | Msa0581600:CDS | 50.0% | |
| GGAAGAAGATCGATTGGGAC+GGG | + | chr4_1:87096552-87096571 | Msa0581600:CDS | 50.0% | |
| GACACCTGACACATCAACAC+CGG | - | chr4_1:87097318-87097337 | None:intergenic | 50.0% | |
| TATTCCCAGTCTATGGGCTC+AGG | - | chr4_1:87097402-87097421 | None:intergenic | 50.0% | |
| AGGAATTGGCACTCGTTTGG+TGG | + | chr4_1:87097431-87097450 | Msa0581600:CDS | 50.0% | |
| !! | AAACGTGATGATGGGGTGGA+AGG | + | chr4_1:87098527-87098546 | Msa0581600:intron | 50.0% |
| GGTTGAGCTTAAGGAAGCAG+AGG | + | chr4_1:87099514-87099533 | Msa0581600:CDS | 50.0% | |
| CTTCTTCAGCTCAGGATGCT+CGG | - | chr4_1:87099718-87099737 | None:intergenic | 50.0% | |
| GAAGATCGATTGGGACGGGA+TGG | + | chr4_1:87096556-87096575 | Msa0581600:CDS | 55.0% | |
| !! | CGCAAAACGTGATGATGGGG+TGG | + | chr4_1:87098523-87098542 | Msa0581600:intron | 55.0% |
| AGGAGCCTGAGCCCATAGAC+TGG | + | chr4_1:87097394-87097413 | Msa0581600:intron | 60.0% | |
| GGAGCCTGAGCCCATAGACT+GGG | + | chr4_1:87097395-87097414 | Msa0581600:intron | 60.0% | |
| ATCGGGGCAGTTGGGTTCTC+CGG | - | chr4_1:87097784-87097803 | None:intergenic | 60.0% | |
| !! | CAGATAGGGGTGTTCGGGGT+TGG | - | chr4_1:87098760-87098779 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 87096417 | 87100120 | 87096417 | ID=Msa0581600;Name=Msa0581600 |
| chr4_1 | mRNA | 87096417 | 87100120 | 87096417 | ID=Msa0581600-mRNA-1;Parent=Msa0581600;Name=Msa0581600-mRNA-1;_AED=0.01;_eAED=0.01;_QI=89|1|1|1|1|1|5|314|177 |
| chr4_1 | exon | 87096417 | 87096676 | 87096417 | ID=Msa0581600-mRNA-1:exon:32321;Parent=Msa0581600-mRNA-1 |
| chr4_1 | exon | 87097396 | 87097477 | 87097396 | ID=Msa0581600-mRNA-1:exon:32322;Parent=Msa0581600-mRNA-1 |
| chr4_1 | exon | 87099358 | 87099422 | 87099358 | ID=Msa0581600-mRNA-1:exon:32323;Parent=Msa0581600-mRNA-1 |
| chr4_1 | exon | 87099512 | 87099598 | 87099512 | ID=Msa0581600-mRNA-1:exon:32324;Parent=Msa0581600-mRNA-1 |
| chr4_1 | exon | 87099678 | 87100120 | 87099678 | ID=Msa0581600-mRNA-1:exon:32325;Parent=Msa0581600-mRNA-1 |
| chr4_1 | five_prime_UTR | 87096417 | 87096505 | 87096417 | ID=Msa0581600-mRNA-1:five_prime_utr;Parent=Msa0581600-mRNA-1 |
| chr4_1 | CDS | 87096506 | 87096676 | 87096506 | ID=Msa0581600-mRNA-1:cds;Parent=Msa0581600-mRNA-1 |
| chr4_1 | CDS | 87097396 | 87097477 | 87097396 | ID=Msa0581600-mRNA-1:cds;Parent=Msa0581600-mRNA-1 |
| chr4_1 | CDS | 87099358 | 87099422 | 87099358 | ID=Msa0581600-mRNA-1:cds;Parent=Msa0581600-mRNA-1 |
| chr4_1 | CDS | 87099512 | 87099598 | 87099512 | ID=Msa0581600-mRNA-1:cds;Parent=Msa0581600-mRNA-1 |
| chr4_1 | CDS | 87099678 | 87099806 | 87099678 | ID=Msa0581600-mRNA-1:cds;Parent=Msa0581600-mRNA-1 |
| chr4_1 | three_prime_UTR | 87099807 | 87100120 | 87099807 | ID=Msa0581600-mRNA-1:three_prime_utr;Parent=Msa0581600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
