Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660590 | XP_003591975.1 | 97.740 | 177 | 4 | 0 | 1 | 177 | 1 | 177 | 3.75e-124 | 357 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660590 | sp|Q9FT52|ATP5H_ARATH | 80.952 | 168 | 32 | 0 | 1 | 168 | 1 | 168 | 3.24e-100 | 288 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0069440 | Msa0660590 | 0.977782 | 1.790172e-144 | -8.615850e-47 |
| Msa0604960 | Msa0660590 | 0.804018 | 2.641415e-49 | -8.615850e-47 |
| Msa0659030 | Msa0660590 | 0.833893 | 4.105604e-56 | -8.615850e-47 |
| Msa0660590 | Msa0705000 | 0.834923 | 2.263342e-56 | -8.615850e-47 |
| Msa0660590 | Msa0705040 | 0.837395 | 5.330457e-57 | -8.615850e-47 |
| Msa0660590 | Msa1374240 | 0.814155 | 1.779619e-51 | -8.615850e-47 |
| Msa0131490 | Msa0660590 | 0.990769 | 3.093491e-184 | -8.615850e-47 |
| Msa0131560 | Msa0660590 | 0.980434 | 3.277862e-150 | -8.615850e-47 |
| Msa0177360 | Msa0660590 | 0.970931 | 2.254375e-132 | -8.615850e-47 |
| Msa0568470 | Msa0660590 | 0.802505 | 5.435672e-49 | -8.615850e-47 |
| Msa0581600 | Msa0660590 | 0.996445 | 1.284492e-227 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660590 | MtrunA17_Chr1g0200191 | 97.740 | 177 | 4 | 0 | 1 | 177 | 1 | 177 | 3.45e-128 | 357 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660590 | AT3G52300.1 | 80.952 | 168 | 32 | 0 | 1 | 168 | 1 | 168 | 3.29e-101 | 288 |
| Msa0660590 | AT3G52300.2 | 78.704 | 108 | 23 | 0 | 1 | 108 | 1 | 108 | 8.71e-62 | 187 |
Find 49 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATAATATTCCCAGTCTA+TGG | 0.167189 | 4_3:-71551046 | None:intergenic |
| CAGTCAAGACACCCAATTTC+AGG | 0.179551 | 4_3:+71553594 | Msa0660590:three_prime_UTR |
| CTTACCAGTGCATCAAATTT+AGG | 0.208576 | 4_3:-71553038 | None:intergenic |
| GTATACATTTGTTCTGATTC+TGG | 0.223703 | 4_3:+71553665 | Msa0660590:three_prime_UTR |
| ATTTAGAAACTGTTGTCTTA+TGG | 0.283362 | 4_3:+71553568 | Msa0660590:three_prime_UTR |
| AGGAGATTAGGAACGATAAC+TGG | 0.292837 | 4_3:+71553381 | Msa0660590:CDS |
| GCTGAAGTTGGTTGAGCTTA+AGG | 0.315735 | 4_3:+71553138 | Msa0660590:intron |
| GTCCCAATCGATCTTCTTCC+CGG | 0.344356 | 4_3:-71550189 | None:intergenic |
| AATAAATTGTTGTGTTTGTC+TGG | 0.357169 | 4_3:+71553639 | Msa0660590:three_prime_UTR |
| TCTGAAAGAATCTGAACGTT+TGG | 0.374930 | 4_3:+71553177 | Msa0660590:CDS |
| AAAAGGAATTGGCACTCGTT+TGG | 0.433018 | 4_3:+71551068 | Msa0660590:CDS |
| AGCAATTTGATGAGGAGATT+AGG | 0.438102 | 4_3:+71553369 | Msa0660590:CDS |
| TCAAATTGCTTCTTCAGCTC+AGG | 0.438466 | 4_3:-71553356 | None:intergenic |
| AGTTACTGTGTCAACAAACT+TGG | 0.447924 | 4_3:-71553003 | None:intergenic |
| GACTGGGAATATTATAGAAA+AGG | 0.455154 | 4_3:+71551051 | Msa0660590:CDS |
| GAATATTATAGAAAAGGAAT+TGG | 0.458956 | 4_3:+71551057 | Msa0660590:CDS |
| TAAGCCTAAATTTGATGCAC+TGG | 0.467869 | 4_3:+71553034 | Msa0660590:CDS |
| AGGAGCCTGAGCCCATAGAC+TGG | 0.471648 | 4_3:+71551034 | Msa0660590:intron |
| AGAATCTGAACGTTTGGAAA+AGG | 0.472141 | 4_3:+71553183 | Msa0660590:CDS |
| CTATAATATTCCCAGTCTAT+GGG | 0.473165 | 4_3:-71551045 | None:intergenic |
| ATTTGTTCTGATTCTGGCAA+TGG | 0.477285 | 4_3:+71553671 | Msa0660590:three_prime_UTR |
| AAATTCACGACGAGCTTCAT+CGG | 0.482178 | 4_3:-71550234 | None:intergenic |
| ACAGATGTTGCATTCAAAGC+CGG | 0.489390 | 4_3:+71550170 | Msa0660590:CDS |
| GCAAGGAAAACATCAACTTC+AGG | 0.493258 | 4_3:-71553435 | None:intergenic |
| TCAAATTTAGGCTTATATTG+AGG | 0.499518 | 4_3:-71553026 | None:intergenic |
| AGGAATTGGCACTCGTTTGG+TGG | 0.500877 | 4_3:+71551071 | Msa0660590:CDS |
| CTTCTTCAGCTCAGGATGCT+CGG | 0.501457 | 4_3:-71553348 | None:intergenic |
| CAGATGTTGCATTCAAAGCC+GGG | 0.515624 | 4_3:+71550171 | Msa0660590:CDS |
| TATTCCCAGTCTATGGGCTC+AGG | 0.528775 | 4_3:-71551039 | None:intergenic |
| AAGCCGGGAAGAAGATCGAT+TGG | 0.530458 | 4_3:+71550186 | Msa0660590:CDS |
| GGAAGAAGATCGATTGGGAC+GGG | 0.534761 | 4_3:+71550192 | Msa0660590:CDS |
| AAAGTACTCATCTGCTGTCA+TGG | 0.536378 | 4_3:-71553324 | None:intergenic |
| GGAGATTAGGAACGATAACT+GGG | 0.553647 | 4_3:+71553382 | Msa0660590:CDS |
| GTTACTGTGTCAACAAACTT+GGG | 0.562398 | 4_3:-71553002 | None:intergenic |
| AGCCGGGAAGAAGATCGATT+GGG | 0.567684 | 4_3:+71550187 | Msa0660590:CDS |
| GGAGCCTGAGCCCATAGACT+GGG | 0.568751 | 4_3:+71551035 | Msa0660590:intron |
| GAAGATCGATTGGGACGGGA+TGG | 0.577380 | 4_3:+71550196 | Msa0660590:CDS |
| TGCTAATGTACAGTCGCTGA+AGG | 0.578326 | 4_3:+71553210 | Msa0660590:CDS |
| GGTTGAGCTTAAGGAAGCAG+AGG | 0.581516 | 4_3:+71553147 | Msa0660590:CDS |
| CTCTGGTAACGATAGTGTCA+AGG | 0.588551 | 4_3:+71550045 | None:intergenic |
| TATTATTTATTAAACCAGCA+AGG | 0.594786 | 4_3:-71553452 | None:intergenic |
| ACGATAGTGTCAAGGTGCGA+AGG | 0.595692 | 4_3:+71550053 | None:intergenic |
| ACTCGAAACAAAGTTCAGCC+AGG | 0.598938 | 4_3:+71550295 | Msa0660590:CDS |
| AAAGCGAAAGCGAAAATGAG+CGG | 0.621372 | 4_3:+71550131 | Msa0660590:exon |
| GGGAAGAAGATCGATTGGGA+CGG | 0.627371 | 4_3:+71550191 | Msa0660590:CDS |
| GCTGAAGAAGCAATTTGATG+AGG | 0.630857 | 4_3:+71553361 | Msa0660590:CDS |
| TTACTGTGTCAACAAACTTG+GGG | 0.648687 | 4_3:-71553001 | None:intergenic |
| AAACTATCAAAGGTCACACA+AGG | 0.675809 | 4_3:+71553732 | Msa0660590:three_prime_UTR |
| GAGATTAGGAACGATAACTG+GGG | 0.757484 | 4_3:+71553383 | Msa0660590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTAAAATTTTTTTTTTAT+TGG | + | chr4_3:71551802-71551821 | Msa0660590:intron | 0.0% |
| !! | TAAAAAAATACTAATATAAG+GGG | - | chr4_3:71551148-71551167 | None:intergenic | 10.0% |
| !! | TAAAAATGAGAAATTAATAT+AGG | + | chr4_3:71551694-71551713 | Msa0660590:intron | 10.0% |
| !!! | TTTTTTTAATCTGTATTTAA+TGG | + | chr4_3:71551931-71551950 | Msa0660590:intron | 10.0% |
| !!! | ATATATTCTAATGTAAATTT+TGG | - | chr4_3:71552501-71552520 | None:intergenic | 10.0% |
| !!! | TTTTTAGTGTTTTTATTATT+AGG | - | chr4_3:71553701-71553720 | None:intergenic | 10.0% |
| !! | AATACATAATCTATTTGTAT+AGG | - | chr4_3:71550752-71550771 | None:intergenic | 15.0% |
| !!! | TAATTTGATAACTACATAAT+TGG | - | chr4_3:71550932-71550951 | None:intergenic | 15.0% |
| !!! | AGTATTTTTTTATTTGTCAA+TGG | + | chr4_3:71551156-71551175 | Msa0660590:intron | 15.0% |
| !!! | TACTGTAAATATTTGTATTT+TGG | - | chr4_3:71551852-71551871 | None:intergenic | 15.0% |
| !!! | AATTATTTCTCAAATTGAAA+AGG | + | chr4_3:71552557-71552576 | Msa0660590:intron | 15.0% |
| !! | AAATAACAATATATTGAATG+AGG | - | chr4_3:71552638-71552657 | None:intergenic | 15.0% |
| !!! | TACATTATTTTTTTGTAACT+TGG | + | chr4_3:71553477-71553496 | Msa0660590:three_prime_UTR | 15.0% |
| !! | AATAGTTAAAAAACTATCAA+AGG | + | chr4_3:71553722-71553741 | Msa0660590:three_prime_UTR | 15.0% |
| !! | TGTAGTTATCAAATTATTAC+CGG | + | chr4_3:71550936-71550955 | Msa0660590:intron | 20.0% |
| !! | GAATATTATAGAAAAGGAAT+TGG | + | chr4_3:71551057-71551076 | Msa0660590:CDS | 20.0% |
| !! | AAATAACTTGACAACAAAAT+TGG | - | chr4_3:71551783-71551802 | None:intergenic | 20.0% |
| !! | TCATAATTATATAACTGAAC+TGG | - | chr4_3:71552247-71552266 | None:intergenic | 20.0% |
| !!! | GTTTTATAGTTGTTTTTTTC+AGG | + | chr4_3:71552334-71552353 | Msa0660590:intron | 20.0% |
| !!! | GTTAAATTTTAACATGCATT+AGG | - | chr4_3:71552477-71552496 | None:intergenic | 20.0% |
| !! | AGTTATTGCCTAAATATTTA+TGG | + | chr4_3:71552853-71552872 | Msa0660590:intron | 20.0% |
| !! | AATGGTATGTAAAATTTGAA+TGG | - | chr4_3:71552938-71552957 | None:intergenic | 20.0% |
| !! | AACATCAAAAGTTGAATTAA+TGG | - | chr4_3:71552956-71552975 | None:intergenic | 20.0% |
| !!! | TTCTCAGTTTTATGTAATAT+TGG | + | chr4_3:71553254-71553273 | Msa0660590:intron | 20.0% |
| !! | TATTATTTATTAAACCAGCA+AGG | - | chr4_3:71553455-71553474 | None:intergenic | 20.0% |
| !!! | AAAAACATTTTCCTGAAATT+GGG | - | chr4_3:71553608-71553627 | None:intergenic | 20.0% |
| !! | CTTCATCATCAATTTTGAAT+TGG | + | chr4_3:71550481-71550500 | Msa0660590:intron | 25.0% |
| !!! | ATCATGTTTTAGTGCATTTT+CGG | + | chr4_3:71550513-71550532 | Msa0660590:intron | 25.0% |
| ! | GTATTCAAAACATGATGAAA+AGG | - | chr4_3:71550722-71550741 | None:intergenic | 25.0% |
| ! | TATCATTTCTTATTAATCGC+AGG | + | chr4_3:71551014-71551033 | Msa0660590:intron | 25.0% |
| ! | AGGATATTGATAAATTCAAC+TGG | + | chr4_3:71551281-71551300 | Msa0660590:intron | 25.0% |
| !!! | AGTTCAGTTTTTTTAAGGAT+CGG | - | chr4_3:71551442-71551461 | None:intergenic | 25.0% |
| !!! | CAAACAGTTCAGTTTTTTTA+AGG | - | chr4_3:71551447-71551466 | None:intergenic | 25.0% |
| !! | AAAAAGATAATCTTGATAGC+TGG | - | chr4_3:71552099-71552118 | None:intergenic | 25.0% |
| !! | AGCTATCAAGATTATCTTTT+TGG | + | chr4_3:71552098-71552117 | Msa0660590:intron | 25.0% |
| ! | AATTATGAACCATAGTTTAC+TGG | + | chr4_3:71552259-71552278 | Msa0660590:intron | 25.0% |
| ! | ATGTCTATCAATTTCAGATA+GGG | - | chr4_3:71552407-71552426 | None:intergenic | 25.0% |
| ! | AATGTCTATCAATTTCAGAT+AGG | - | chr4_3:71552408-71552427 | None:intergenic | 25.0% |
| ! | CATTAGAATATATGAAACTG+TGG | + | chr4_3:71552508-71552527 | Msa0660590:intron | 25.0% |
| ! | AAGTACATAAGAAAAGAAAC+TGG | + | chr4_3:71552580-71552599 | Msa0660590:intron | 25.0% |
| ! | TAAAACCTGGAAATTGTATA+TGG | + | chr4_3:71552676-71552695 | Msa0660590:intron | 25.0% |
| ! | GACTACATCCATAAATATTT+AGG | - | chr4_3:71552864-71552883 | None:intergenic | 25.0% |
| ! | TCAAATTTAGGCTTATATTG+AGG | - | chr4_3:71553029-71553048 | None:intergenic | 25.0% |
| !! | TTTTCTGTGAAAACAAACAA+TGG | - | chr4_3:71553295-71553314 | None:intergenic | 25.0% |
| !!! | ATTGTTTGTTTTCACAGAAA+AGG | + | chr4_3:71553294-71553313 | Msa0660590:intron | 25.0% |
| ! | ATTTAGAAACTGTTGTCTTA+TGG | + | chr4_3:71553568-71553587 | Msa0660590:three_prime_UTR | 25.0% |
| !! | CAAAAACATTTTCCTGAAAT+TGG | - | chr4_3:71553609-71553628 | None:intergenic | 25.0% |
| !!! | ATTTCAGGAAAATGTTTTTG+TGG | + | chr4_3:71553609-71553628 | Msa0660590:three_prime_UTR | 25.0% |
| ! | AATAAATTGTTGTGTTTGTC+TGG | + | chr4_3:71553639-71553658 | Msa0660590:three_prime_UTR | 25.0% |
| AGCATCTAAGAACAAAATGA+AGG | - | chr4_3:71550386-71550405 | None:intergenic | 30.0% | |
| TTGTACCTTTGTAATGATGT+TGG | + | chr4_3:71550615-71550634 | Msa0660590:intron | 30.0% | |
| TGTACCTTTGTAATGATGTT+GGG | + | chr4_3:71550616-71550635 | Msa0660590:intron | 30.0% | |
| AGATTATGTATTCAGTTACG+AGG | + | chr4_3:71550760-71550779 | Msa0660590:intron | 30.0% | |
| CTATAATATTCCCAGTCTAT+GGG | - | chr4_3:71551048-71551067 | None:intergenic | 30.0% | |
| TCTATAATATTCCCAGTCTA+TGG | - | chr4_3:71551049-71551068 | None:intergenic | 30.0% | |
| GACTGGGAATATTATAGAAA+AGG | + | chr4_3:71551051-71551070 | Msa0660590:CDS | 30.0% | |
| GTACCATTGAATACAAGAAT+CGG | - | chr4_3:71551309-71551328 | None:intergenic | 30.0% | |
| ! | TGGTACCATATTCTTTTCAT+AGG | + | chr4_3:71551323-71551342 | Msa0660590:intron | 30.0% |
| ! | GGTACCATATTCTTTTCATA+GGG | + | chr4_3:71551324-71551343 | Msa0660590:intron | 30.0% |
| TCTTCCCTATGAAAAGAATA+TGG | - | chr4_3:71551331-71551350 | None:intergenic | 30.0% | |
| !!! | TTCAGTTTTTTTAAGGATCG+GGG | - | chr4_3:71551440-71551459 | None:intergenic | 30.0% |
| !!! | GTTCAGTTTTTTTAAGGATC+GGG | - | chr4_3:71551441-71551460 | None:intergenic | 30.0% |
| !! | ACTGAACTACTTTTGAAGAA+TGG | - | chr4_3:71551520-71551539 | None:intergenic | 30.0% |
| ! | AAAGCAGTTTTACAAACAGT+TGG | + | chr4_3:71551735-71551754 | Msa0660590:intron | 30.0% |
| CGAATGAGACAAAAAGATAT+TGG | - | chr4_3:71552138-71552157 | None:intergenic | 30.0% | |
| TAAGCAAAACTGCAACTAAT+GGG | - | chr4_3:71552219-71552238 | None:intergenic | 30.0% | |
| AATTATATAACTGAACTGGC+TGG | - | chr4_3:71552243-71552262 | None:intergenic | 30.0% | |
| CTGATACTTAATAGCTTGAA+CGG | - | chr4_3:71552305-71552324 | None:intergenic | 30.0% | |
| !!! | TTGTTTTTTTCAGGTCAGTT+AGG | + | chr4_3:71552343-71552362 | Msa0660590:intron | 30.0% |
| TGTCTATCAATTTCAGATAG+GGG | - | chr4_3:71552406-71552425 | None:intergenic | 30.0% | |
| ! | ATATATGAAACTGTGGATTG+TGG | + | chr4_3:71552515-71552534 | Msa0660590:intron | 30.0% |
| ATTGAATGAGGCAAAGTTAT+AGG | - | chr4_3:71552626-71552645 | None:intergenic | 30.0% | |
| ! | TGTTATTTGACCTATTCACA+TGG | + | chr4_3:71552650-71552669 | Msa0660590:intron | 30.0% |
| GTTATTTGACCTATTCACAT+GGG | + | chr4_3:71552651-71552670 | Msa0660590:intron | 30.0% | |
| TGATACCATATACAATTTCC+AGG | - | chr4_3:71552684-71552703 | None:intergenic | 30.0% | |
| ATGCACGATTAATAAATGCA+AGG | - | chr4_3:71552763-71552782 | None:intergenic | 30.0% | |
| ! | TCGTGCATTGAATTGATTTA+AGG | + | chr4_3:71552775-71552794 | Msa0660590:intron | 30.0% |
| GGTATGTAAAATTTGAATGG+CGG | - | chr4_3:71552935-71552954 | None:intergenic | 30.0% | |
| CTTGATTGATAGAGAAAAGT+TGG | - | chr4_3:71553085-71553104 | None:intergenic | 30.0% | |
| ! | TGGTTTTTCTCCAGTTTAAA+AGG | + | chr4_3:71553497-71553516 | Msa0660590:three_prime_UTR | 30.0% |
| ! | CTGCAGTTGTCAAAATTTTA+TGG | + | chr4_3:71553532-71553551 | Msa0660590:three_prime_UTR | 30.0% |
| GTATACATTTGTTCTGATTC+TGG | + | chr4_3:71553665-71553684 | Msa0660590:three_prime_UTR | 30.0% | |
| TGTGAAGGAATTTATCTACC+TGG | - | chr4_3:71550316-71550335 | None:intergenic | 35.0% | |
| GAAATTAGAGAGATCTGTGA+AGG | - | chr4_3:71550331-71550350 | None:intergenic | 35.0% | |
| !! | TGCTAGATCGATTGACTTTT+AGG | + | chr4_3:71550402-71550421 | Msa0660590:intron | 35.0% |
| GTACCTTTGTAATGATGTTG+GGG | + | chr4_3:71550617-71550636 | Msa0660590:intron | 35.0% | |
| TTTCCCCAACATCATTACAA+AGG | - | chr4_3:71550623-71550642 | None:intergenic | 35.0% | |
| TTGTAATGATGTTGGGGAAA+TGG | + | chr4_3:71550623-71550642 | Msa0660590:intron | 35.0% | |
| ATACCAACACTTCTGTTTGA+AGG | + | chr4_3:71550847-71550866 | Msa0660590:intron | 35.0% | |
| !! | TTAGAGCATGACTTGTTTGA+TGG | + | chr4_3:71551195-71551214 | Msa0660590:intron | 35.0% |
| TCATGCACTTTCTCTTCTTT+AGG | + | chr4_3:71551244-71551263 | Msa0660590:intron | 35.0% | |
| CATGCACTTTCTCTTCTTTA+GGG | + | chr4_3:71551245-71551264 | Msa0660590:intron | 35.0% | |
| ATGCACTTTCTCTTCTTTAG+GGG | + | chr4_3:71551246-71551265 | Msa0660590:intron | 35.0% | |
| GATCCGATTCTTGTATTCAA+TGG | + | chr4_3:71551303-71551322 | Msa0660590:intron | 35.0% | |
| TAATTCACAAAAGCCATCCT+CGG | + | chr4_3:71551359-71551378 | Msa0660590:intron | 35.0% | |
| ACCAAAAAAACTGAACTGTC+CGG | + | chr4_3:71551402-71551421 | Msa0660590:intron | 35.0% | |
| TGAGATGTCAATTGTGCTAA+GGG | - | chr4_3:71551669-71551688 | None:intergenic | 35.0% | |
| ATGAGATGTCAATTGTGCTA+AGG | - | chr4_3:71551670-71551689 | None:intergenic | 35.0% | |
| CTAAGCAAAACTGCAACTAA+TGG | - | chr4_3:71552220-71552239 | None:intergenic | 35.0% | |
| TACTTTGGTCCAGTAAACTA+TGG | - | chr4_3:71552271-71552290 | None:intergenic | 35.0% | |
| GTTATAGGAAACGTTGTCAT+GGG | - | chr4_3:71552611-71552630 | None:intergenic | 35.0% | |
| AGTTATAGGAAACGTTGTCA+TGG | - | chr4_3:71552612-71552631 | None:intergenic | 35.0% | |
| !!! | GGTTTTATTCCCATGTGAAT+AGG | - | chr4_3:71552663-71552682 | None:intergenic | 35.0% |
| ATTCACATGGGAATAAAACC+TGG | + | chr4_3:71552663-71552682 | Msa0660590:intron | 35.0% | |
| ! | GTAAAATTTGAATGGCGGAA+TGG | - | chr4_3:71552930-71552949 | None:intergenic | 35.0% |
| TGATGTTATGCTTCTTCTGT+AGG | + | chr4_3:71552969-71552988 | Msa0660590:intron | 35.0% | |
| TTACTGTGTCAACAAACTTG+GGG | - | chr4_3:71553004-71553023 | None:intergenic | 35.0% | |
| GTTACTGTGTCAACAAACTT+GGG | - | chr4_3:71553005-71553024 | None:intergenic | 35.0% | |
| AGTTACTGTGTCAACAAACT+TGG | - | chr4_3:71553006-71553025 | None:intergenic | 35.0% | |
| TAAGCCTAAATTTGATGCAC+TGG | + | chr4_3:71553034-71553053 | Msa0660590:CDS | 35.0% | |
| CTTACCAGTGCATCAAATTT+AGG | - | chr4_3:71553041-71553060 | None:intergenic | 35.0% | |
| ! | ATGTGTTTTCTTGCTGAAGT+TGG | + | chr4_3:71553126-71553145 | Msa0660590:intron | 35.0% |
| TCTGAAAGAATCTGAACGTT+TGG | + | chr4_3:71553177-71553196 | Msa0660590:CDS | 35.0% | |
| AGAATCTGAACGTTTGGAAA+AGG | + | chr4_3:71553183-71553202 | Msa0660590:CDS | 35.0% | |
| AGGTAATAGAAATCACCACA+TGG | + | chr4_3:71553230-71553249 | Msa0660590:intron | 35.0% | |
| CATAAAACTGAGAAACCATG+TGG | - | chr4_3:71553248-71553267 | None:intergenic | 35.0% | |
| AGCAATTTGATGAGGAGATT+AGG | + | chr4_3:71553369-71553388 | Msa0660590:CDS | 35.0% | |
| ! | ATGTGGAGAACCTTTTAAAC+TGG | - | chr4_3:71553510-71553529 | None:intergenic | 35.0% |
| ! | TTTTGACAACTGCAGAAATG+TGG | - | chr4_3:71553527-71553546 | None:intergenic | 35.0% |
| !! | TCAGGAAAATGTTTTTGTGG+CGG | + | chr4_3:71553612-71553631 | Msa0660590:three_prime_UTR | 35.0% |
| ATTTGTTCTGATTCTGGCAA+TGG | + | chr4_3:71553671-71553690 | Msa0660590:three_prime_UTR | 35.0% | |
| AAAGCGAAAGCGAAAATGAG+CGG | + | chr4_3:71550131-71550150 | Msa0660590:exon | 40.0% | |
| ACAGATGTTGCATTCAAAGC+CGG | + | chr4_3:71550170-71550189 | Msa0660590:CDS | 40.0% | |
| AAATTCACGACGAGCTTCAT+CGG | - | chr4_3:71550237-71550256 | None:intergenic | 40.0% | |
| TATTCAGTTACGAGGCTTAG+AGG | + | chr4_3:71550768-71550787 | Msa0660590:intron | 40.0% | |
| ! | AAGCCTTCAAACAGAAGTGT+TGG | - | chr4_3:71550853-71550872 | None:intergenic | 40.0% |
| TCAGACACACTAACAAGTGT+CGG | - | chr4_3:71550885-71550904 | None:intergenic | 40.0% | |
| AAAAGGAATTGGCACTCGTT+TGG | + | chr4_3:71551068-71551087 | Msa0660590:CDS | 40.0% | |
| ! | TCTCTTCTTTAGGGGTAAAG+TGG | + | chr4_3:71551254-71551273 | Msa0660590:intron | 40.0% |
| TTTAGGGGTAAAGTGGTAGA+AGG | + | chr4_3:71551261-71551280 | Msa0660590:intron | 40.0% | |
| AAAAGCCATCCTCGGAAATT+AGG | + | chr4_3:71551367-71551386 | Msa0660590:intron | 40.0% | |
| AAAGCCATCCTCGGAAATTA+GGG | + | chr4_3:71551368-71551387 | Msa0660590:intron | 40.0% | |
| ATGAACAACCCTAATTTCCG+AGG | - | chr4_3:71551379-71551398 | None:intergenic | 40.0% | |
| !!! | TCCGGACAGTTCAGTTTTTT+TGG | - | chr4_3:71551406-71551425 | None:intergenic | 40.0% |
| TCATTCGCAAAACGTGATGA+TGG | + | chr4_3:71552151-71552170 | Msa0660590:intron | 40.0% | |
| CATTCGCAAAACGTGATGAT+GGG | + | chr4_3:71552152-71552171 | Msa0660590:intron | 40.0% | |
| ! | ATTCGCAAAACGTGATGATG+GGG | + | chr4_3:71552153-71552172 | Msa0660590:intron | 40.0% |
| ACTGGACCAAAGTACAAGTT+CGG | + | chr4_3:71552277-71552296 | Msa0660590:intron | 40.0% | |
| !! | AATTTCAGATAGGGGTGTTC+GGG | - | chr4_3:71552398-71552417 | None:intergenic | 40.0% |
| !! | CAATTTCAGATAGGGGTGTT+CGG | - | chr4_3:71552399-71552418 | None:intergenic | 40.0% |
| AGACATTCTTTCGTTGTGTC+TGG | + | chr4_3:71552421-71552440 | Msa0660590:intron | 40.0% | |
| ! | TGCTTTTGCATTGCAGAACA+CGG | - | chr4_3:71552727-71552746 | None:intergenic | 40.0% |
| CATACATAGTGAGAGAGATG+AGG | + | chr4_3:71552892-71552911 | Msa0660590:intron | 40.0% | |
| ! | AAAGTACTCATCTGCTGTCA+TGG | - | chr4_3:71553327-71553346 | None:intergenic | 40.0% |
| TCAAATTGCTTCTTCAGCTC+AGG | - | chr4_3:71553359-71553378 | None:intergenic | 40.0% | |
| GCTGAAGAAGCAATTTGATG+AGG | + | chr4_3:71553361-71553380 | Msa0660590:CDS | 40.0% | |
| AGGAGATTAGGAACGATAAC+TGG | + | chr4_3:71553381-71553400 | Msa0660590:CDS | 40.0% | |
| GGAGATTAGGAACGATAACT+GGG | + | chr4_3:71553382-71553401 | Msa0660590:CDS | 40.0% | |
| GAGATTAGGAACGATAACTG+GGG | + | chr4_3:71553383-71553402 | Msa0660590:CDS | 40.0% | |
| GCAAGGAAAACATCAACTTC+AGG | - | chr4_3:71553438-71553457 | None:intergenic | 40.0% | |
| !!! | GAAGTTGATGTTTTCCTTGC+TGG | + | chr4_3:71553438-71553457 | Msa0660590:exon | 40.0% |
| CAGATGTTGCATTCAAAGCC+GGG | + | chr4_3:71550171-71550190 | Msa0660590:CDS | 45.0% | |
| ACTCGAAACAAAGTTCAGCC+AGG | + | chr4_3:71550295-71550314 | Msa0660590:CDS | 45.0% | |
| !! | CACTAACAAGTGTCGGACAT+CGG | - | chr4_3:71550878-71550897 | None:intergenic | 45.0% |
| !! | ATTACCGGTGTTGATGTGTC+AGG | + | chr4_3:71550951-71550970 | Msa0660590:intron | 45.0% |
| ACAACCCTAATTTCCGAGGA+TGG | - | chr4_3:71551375-71551394 | None:intergenic | 45.0% | |
| !! | TTTTAAGGATCGGGGCAGTT+GGG | - | chr4_3:71551432-71551451 | None:intergenic | 45.0% |
| !! | TTTTTAAGGATCGGGGCAGT+TGG | - | chr4_3:71551433-71551452 | None:intergenic | 45.0% |
| ! | TTTTGTGCGAACTGAACTGC+TGG | + | chr4_3:71551469-71551488 | Msa0660590:intron | 45.0% |
| AGAGAGAGCTGACAACAGTT+TGG | - | chr4_3:71551556-71551575 | None:intergenic | 45.0% | |
| ACGGATCCGAACTTGTACTT+TGG | - | chr4_3:71552286-71552305 | None:intergenic | 45.0% | |
| !! | ATTTCAGATAGGGGTGTTCG+GGG | - | chr4_3:71552397-71552416 | None:intergenic | 45.0% |
| ! | GCTGAAGTTGGTTGAGCTTA+AGG | + | chr4_3:71553138-71553157 | Msa0660590:intron | 45.0% |
| TGCTAATGTACAGTCGCTGA+AGG | + | chr4_3:71553210-71553229 | Msa0660590:CDS | 45.0% | |
| CAGTCAAGACACCCAATTTC+AGG | + | chr4_3:71553594-71553613 | Msa0660590:three_prime_UTR | 45.0% | |
| !! | ATAAAAAAATACTAATATAA+GGG | - | chr4_3:71551149-71551168 | None:intergenic | 5.0% |
| !! | AATAAAAAAATACTAATATA+AGG | - | chr4_3:71551150-71551169 | None:intergenic | 5.0% |
| AAGCCGGGAAGAAGATCGAT+TGG | + | chr4_3:71550186-71550205 | Msa0660590:CDS | 50.0% | |
| AGCCGGGAAGAAGATCGATT+GGG | + | chr4_3:71550187-71550206 | Msa0660590:CDS | 50.0% | |
| GTCCCAATCGATCTTCTTCC+CGG | - | chr4_3:71550192-71550211 | None:intergenic | 50.0% | |
| GGGAAGAAGATCGATTGGGA+CGG | + | chr4_3:71550191-71550210 | Msa0660590:CDS | 50.0% | |
| GGAAGAAGATCGATTGGGAC+GGG | + | chr4_3:71550192-71550211 | Msa0660590:CDS | 50.0% | |
| GACACCTGACACATCAACAC+CGG | - | chr4_3:71550958-71550977 | None:intergenic | 50.0% | |
| TATTCCCAGTCTATGGGCTC+AGG | - | chr4_3:71551042-71551061 | None:intergenic | 50.0% | |
| AGGAATTGGCACTCGTTTGG+TGG | + | chr4_3:71551071-71551090 | Msa0660590:CDS | 50.0% | |
| !! | AAACGTGATGATGGGGTGGA+AGG | + | chr4_3:71552160-71552179 | Msa0660590:intron | 50.0% |
| GGTTGAGCTTAAGGAAGCAG+AGG | + | chr4_3:71553147-71553166 | Msa0660590:CDS | 50.0% | |
| CTTCTTCAGCTCAGGATGCT+CGG | - | chr4_3:71553351-71553370 | None:intergenic | 50.0% | |
| GAAGATCGATTGGGACGGGA+TGG | + | chr4_3:71550196-71550215 | Msa0660590:CDS | 55.0% | |
| !! | CGCAAAACGTGATGATGGGG+TGG | + | chr4_3:71552156-71552175 | Msa0660590:intron | 55.0% |
| !! | AGATAGGGGTGTTCGGGGTT+GGG | - | chr4_3:71552392-71552411 | None:intergenic | 55.0% |
| AGGAGCCTGAGCCCATAGAC+TGG | + | chr4_3:71551034-71551053 | Msa0660590:intron | 60.0% | |
| GGAGCCTGAGCCCATAGACT+GGG | + | chr4_3:71551035-71551054 | Msa0660590:intron | 60.0% | |
| ATCGGGGCAGTTGGGTTCTC+CGG | - | chr4_3:71551424-71551443 | None:intergenic | 60.0% | |
| !! | CAGATAGGGGTGTTCGGGGT+TGG | - | chr4_3:71552393-71552412 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 71550057 | 71553753 | 71550057 | ID=Msa0660590;Name=Msa0660590 |
| chr4_3 | mRNA | 71550057 | 71553753 | 71550057 | ID=Msa0660590-mRNA-1;Parent=Msa0660590;Name=Msa0660590-mRNA-1;_AED=0.01;_eAED=0.01;_QI=89|1|1|1|1|1|5|314|177 |
| chr4_3 | exon | 71550057 | 71550316 | 71550057 | ID=Msa0660590-mRNA-1:exon:21398;Parent=Msa0660590-mRNA-1 |
| chr4_3 | exon | 71551036 | 71551117 | 71551036 | ID=Msa0660590-mRNA-1:exon:21399;Parent=Msa0660590-mRNA-1 |
| chr4_3 | exon | 71552991 | 71553055 | 71552991 | ID=Msa0660590-mRNA-1:exon:21400;Parent=Msa0660590-mRNA-1 |
| chr4_3 | exon | 71553145 | 71553231 | 71553145 | ID=Msa0660590-mRNA-1:exon:21401;Parent=Msa0660590-mRNA-1 |
| chr4_3 | exon | 71553311 | 71553753 | 71553311 | ID=Msa0660590-mRNA-1:exon:21402;Parent=Msa0660590-mRNA-1 |
| chr4_3 | five_prime_UTR | 71550057 | 71550145 | 71550057 | ID=Msa0660590-mRNA-1:five_prime_utr;Parent=Msa0660590-mRNA-1 |
| chr4_3 | CDS | 71550146 | 71550316 | 71550146 | ID=Msa0660590-mRNA-1:cds;Parent=Msa0660590-mRNA-1 |
| chr4_3 | CDS | 71551036 | 71551117 | 71551036 | ID=Msa0660590-mRNA-1:cds;Parent=Msa0660590-mRNA-1 |
| chr4_3 | CDS | 71552991 | 71553055 | 71552991 | ID=Msa0660590-mRNA-1:cds;Parent=Msa0660590-mRNA-1 |
| chr4_3 | CDS | 71553145 | 71553231 | 71553145 | ID=Msa0660590-mRNA-1:cds;Parent=Msa0660590-mRNA-1 |
| chr4_3 | CDS | 71553311 | 71553439 | 71553311 | ID=Msa0660590-mRNA-1:cds;Parent=Msa0660590-mRNA-1 |
| chr4_3 | three_prime_UTR | 71553440 | 71553753 | 71553440 | ID=Msa0660590-mRNA-1:three_prime_utr;Parent=Msa0660590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
