AlfalfaGEDB | Msa1214310

M. sativa cultivar zhongmu-4 / Msa1214310

KEGG: -
GO: GO:0005575 GO:0016020
PFAM: PF01940.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1214310	XP_003609194.1	97.931	290	6	0	83	372	1	290	0.0	574

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1214310	sp\|Q0WP96\|PGR_ARATH	65.965	285	97	0	88	372	4	288	1.79e-130	378

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1214310	G7JU49	97.931	290	6	0	83	372	1	290	0.0	574

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0033220	Msa1214310	0.815918	7.226755e-52	-8.615850e-47
Msa0079880	Msa1214310	0.803349	3.637157e-49	-8.615850e-47
Msa0134780	Msa1214310	0.842024	3.327345e-58	-8.615850e-47
Msa0134880	Msa1214310	0.808479	3.035380e-50	-8.615850e-47
Msa0179700	Msa1214310	0.819955	8.848244e-53	-8.615850e-47
Msa0284800	Msa1214310	0.821520	3.865620e-53	-8.615850e-47
Msa0313900	Msa1214310	0.804972	1.671415e-49	-8.615850e-47
Msa0330520	Msa1214310	0.810843	9.420250e-51	-8.615850e-47
Msa0365210	Msa1214310	0.817325	3.495789e-52	-8.615850e-47
Msa0457570	Msa1214310	0.825191	5.362621e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1214310	MtrunA17_Chr4g0062841	97.931	290	6	0	83	372	1	290	0.0	574

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1214310	AT5G19930.1	65.965	285	97	0	88	372	4	288	1.82e-131	378
Msa1214310	AT5G19930.2	65.965	285	97	0	88	372	4	288	1.82e-131	378

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Find 100 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGACAAGATACGAAG+CGG	0.694625	8_1:-74824179	Msa1214310:CDS
AAAATTATTATTCTTCTCTT+TGG	0.231956	8_1:+74824709	None:intergenic
AAAGAGAAGAATAATAATTT+TGG	0.190946	8_1:-74824707	Msa1214310:CDS
AAAGAGGTTATTCACCTTGA+AGG	0.422918	8_1:+74823121	None:intergenic
AAAGGAGGAAGCCAAATAAA+AGG	0.279137	8_1:-74821676	Msa1214310:three_prime_UTR
AACAACCAACTACCACGAGG+TGG	0.685328	8_1:+74824578	None:intergenic
AACAAGGTGGACAACGAAAC+TGG	0.413804	8_1:-74824137	Msa1214310:intron
AACAGAGGCAATGCCACTAT+TGG	0.410928	8_1:+74823322	None:intergenic
AAGAACAACCAACTACCACG+AGG	0.800597	8_1:+74824575	None:intergenic
AAGGAGGAAGCCAAATAAAA+GGG	0.546018	8_1:-74821675	Msa1214310:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGATCCTGAATTCAAACA+AGG	-	chr8_1:74822057-74822076	Msa1214310:CDS	30.0%
CAAAAAAGGGAACATAGAAA+AGG	+	chr8_1:74822113-74822132	None:intergenic	30.0%
TAGTAGTATAACTCAAGACA+AGG	+	chr8_1:74822155-74822174	None:intergenic	30.0%
CTACAATGGAATATAACTTG+AGG	-	chr8_1:74822283-74822302	Msa1214310:intron	30.0%
GTTGGATACATTTATGTAAG+TGG	+	chr8_1:74822354-74822373	None:intergenic	30.0%
GGGAAATTTATACCAAATTC+AGG	+	chr8_1:74822839-74822858	None:intergenic	30.0%
GTATCCTGAAAAAAACAGTA+GGG	+	chr8_1:74822859-74822878	None:intergenic	30.0%
TGTATCCTGAAAAAAACAGT+AGG	+	chr8_1:74822860-74822879	None:intergenic	30.0%
TATAACTTATAAGCCACTTG+TGG	+	chr8_1:74823810-74823829	None:intergenic	30.0%
TAGAATTCTCAAGCAACTAT+TGG	-	chr8_1:74824072-74824091	Msa1214310:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	74821469	74824763	74821469	ID=Msa1214310;Name=Msa1214310
chr8_1	mRNA	74821469	74824763	74821469	ID=Msa1214310-mRNA-1;Parent=Msa1214310;Name=Msa1214310-mRNA-1;_AED=0.07;_eAED=0.07;_QI=14\|1\|1\|1\|1\|1\|5\|331\|372
chr8_1	exon	74821469	74821931	74821469	ID=Msa1214310-mRNA-1:exon:25692;Parent=Msa1214310-mRNA-1
chr8_1	exon	74822037	74822285	74822037	ID=Msa1214310-mRNA-1:exon:25691;Parent=Msa1214310-mRNA-1
chr8_1	exon	74823136	74823358	74823136	ID=Msa1214310-mRNA-1:exon:25690;Parent=Msa1214310-mRNA-1
chr8_1	exon	74824138	74824251	74824138	ID=Msa1214310-mRNA-1:exon:25689;Parent=Msa1214310-mRNA-1
chr8_1	exon	74824349	74824763	74824349	ID=Msa1214310-mRNA-1:exon:25688;Parent=Msa1214310-mRNA-1
chr8_1	five_prime_UTR	74824750	74824763	74824750	ID=Msa1214310-mRNA-1:five_prime_utr;Parent=Msa1214310-mRNA-1
chr8_1	CDS	74824349	74824749	74824349	ID=Msa1214310-mRNA-1:cds;Parent=Msa1214310-mRNA-1
chr8_1	CDS	74824138	74824251	74824138	ID=Msa1214310-mRNA-1:cds;Parent=Msa1214310-mRNA-1
chr8_1	CDS	74823136	74823358	74823136	ID=Msa1214310-mRNA-1:cds;Parent=Msa1214310-mRNA-1
chr8_1	CDS	74822037	74822285	74822037	ID=Msa1214310-mRNA-1:cds;Parent=Msa1214310-mRNA-1
chr8_1	CDS	74821800	74821931	74821800	ID=Msa1214310-mRNA-1:cds;Parent=Msa1214310-mRNA-1
chr8_1	three_prime_UTR	74821469	74821799	74821469	ID=Msa1214310-mRNA-1:three_prime_utr;Parent=Msa1214310-mRNA-1

Gene Sequence

>Msa1214310

ATGGTCGAACAAACAAGACCAAAGAGAAGAATAATAATTTTGGTTCGTGTTCCTCGTTGCCTATTCGGTTTGGAATGCAACCAATATTATAACGAGAATAAGAGTAACCAACCAAACTCACATCATGTTATTAAAAGTTCCATTCCACTCCACCTCGTGGTAGTTGGTTGTTCTTTCTCGTATCACAACAACAACAACTTCAATCTCATCATCATTTCTGAAACCCAATTTCGGAAACTCACTCAAATGGACCCATCTATTTCTCAGTGGATCCGACCATTGGTTGCTGTCACTGTTGGTTCCTTAATCGCATTCAGAGCTCACAGGAAAAATTCCCTCAGCACTTCTGGTGCACTTGCTGGTTTCTTCGTTATGTCTCTTCACGTTTTTGTTGGATTTAGGTTTGCGGCTATGATATTTGCTTTCTTTTTCACTTCGTCTGCACTCACAAAAAAGGGACAAGATACGAAGCGGTTGATTGATCCTGAATTCAAACAAGGTGGACAACGAAACTGGATACAAGTTCTGGCCAATAGTGGCATTGCCTCTGTTCTGATTGTAGCTTTATGGGTACTAACAGAAGGGAAGGATCAGTGCATGAACTCTAAAGACTCGGCTCTAATTACCGCTCTCATTGGTGGTGTTATTGGCCATTATTGCTGCTGCAATGGAGACACATGGTCTTCTGAGCTTGGAGTTCTCAGTAATGATCGGCCTCGTCTAATCACAACCTTCAAGCCTGTGAGGAAGGGTACAAATGGTGGTGTGACAAAAACAGGACTTCTAGCAGCTGCAGCTGGTGGAAGTGTCATTGGAGTGTCGTATGTTCTTCTAGAACTTTTGACAATCAGGTGTGGGTCTGATAGAATTCTCAAGCAACTATTGGTCATACCCCTCACTACCGTGGCAGGACTATGTGGAAGTATCATTGACTCTCTATTGGGCGCAACATTGCAATTTAGTGGATTCTGCTCTATTCGCCAGAAGGTTGTTGGAAATCCAGGACCAACCGTTAAAAAGATTTCAGGTCTCAGTATTCTTGACAACAATGCAGTGAACTTTGTGTCAATACTATTGACCACAATTTTAACTTCAGTCGCTTGTTTGTACATATTTTAA

Protein sequence

>Msa1214310

MVEQTRPKRRIIILVRVPRCLFGLECNQYYNENKSNQPNSHHVIKSSIPLHLVVVGCSFSYHNNNNFNLIIISETQFRKLTQMDPSISQWIRPLVAVTVGSLIAFRAHRKNSLSTSGALAGFFVMSLHVFVGFRFAAMIFAFFFTSSALTKKGQDTKRLIDPEFKQGGQRNWIQVLANSGIASVLIVALWVLTEGKDQCMNSKDSALITALIGGVIGHYCCCNGDTWSSELGVLSNDRPRLITTFKPVRKGTNGGVTKTGLLAAAAGGSVIGVSYVLLELLTIRCGSDRILKQLLVIPLTTVAGLCGSIIDSLLGATLQFSGFCSIRQKVVGNPGPTVKKISGLSILDNNAVNFVSILLTTILTSVACLYIF*