Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398900 | XP_013450450.1 | 78.571 | 546 | 87 | 6 | 1 | 536 | 1 | 526 | 0.0 | 840 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398900 | sp|A0A1U8IPT1|CB60B_GOSHI | 39.658 | 527 | 267 | 16 | 53 | 536 | 50 | 568 | 6.04e-99 | 313 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398900 | A0A072U5S0 | 78.571 | 546 | 87 | 6 | 1 | 536 | 1 | 526 | 0.0 | 840 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001380 | Msa1398900 | 0.812201 | 4.776077e-51 | -8.615850e-47 |
| Msa0013280 | Msa1398900 | 0.828257 | 9.941430e-55 | -8.615850e-47 |
| Msa0022470 | Msa1398900 | 0.821148 | 4.710773e-53 | -8.615850e-47 |
| Msa0043740 | Msa1398900 | 0.800432 | 1.445138e-48 | -8.615850e-47 |
| Msa0059900 | Msa1398900 | 0.826334 | 2.872372e-54 | -8.615850e-47 |
| Msa0090090 | Msa1398900 | 0.829787 | 4.232902e-55 | -8.615850e-47 |
| Msa0090380 | Msa1398900 | 0.821795 | 3.339114e-53 | -8.615850e-47 |
| Msa0091930 | Msa1398900 | 0.804117 | 2.520161e-49 | -8.615850e-47 |
| Msa0092970 | Msa1398900 | 0.810162 | 1.321699e-50 | -8.615850e-47 |
| Msa0101860 | Msa1398900 | 0.806839 | 6.767551e-50 | -8.615850e-47 |
| Msa0104810 | Msa1398900 | 0.830348 | 3.089057e-55 | -8.615850e-47 |
| Msa0118010 | Msa1398900 | 0.807187 | 5.712454e-50 | -8.615850e-47 |
| Msa1353870 | Msa1398900 | 0.804985 | 1.660414e-49 | -8.615850e-47 |
| Msa1353880 | Msa1398900 | 0.814223 | 1.718960e-51 | -8.615850e-47 |
| Msa1353890 | Msa1398900 | 0.820496 | 6.652418e-53 | -8.615850e-47 |
| Msa1355510 | Msa1398900 | 0.820487 | 6.684318e-53 | -8.615850e-47 |
| Msa1364080 | Msa1398900 | 0.819074 | 1.405600e-52 | -8.615850e-47 |
| Msa1367530 | Msa1398900 | 0.823982 | 1.032957e-53 | -8.615850e-47 |
| Msa1390290 | Msa1398900 | 0.800801 | 1.215571e-48 | -8.615850e-47 |
| Msa1398900 | Msa1400340 | 0.812049 | 5.155306e-51 | -8.615850e-47 |
| Msa1398900 | Msa1416730 | 0.803973 | 2.699343e-49 | -8.615850e-47 |
| Msa1398900 | Msa1420930 | 0.813522 | 2.452546e-51 | -8.615850e-47 |
| Msa1398900 | Msa1420940 | 0.834152 | 3.534757e-56 | -8.615850e-47 |
| Msa1398900 | Msa1424580 | 0.821996 | 2.999564e-53 | -8.615850e-47 |
| Msa1398900 | Msa1433410 | 0.826341 | 2.860568e-54 | -8.615850e-47 |
| Msa1398900 | Msa1443620 | 0.806353 | 8.572181e-50 | -8.615850e-47 |
| Msa1398900 | Msa1447880 | 0.820844 | 5.532909e-53 | -8.615850e-47 |
| Msa0608980 | Msa1398900 | 0.816061 | 6.715473e-52 | -8.615850e-47 |
| Msa0614890 | Msa1398900 | 0.808263 | 3.375228e-50 | -8.615850e-47 |
| Msa0632650 | Msa1398900 | 0.809360 | 1.966988e-50 | -8.615850e-47 |
| Msa0635270 | Msa1398900 | 0.815931 | 7.177637e-52 | -8.615850e-47 |
| Msa0653880 | Msa1398900 | 0.811527 | 6.694803e-51 | -8.615850e-47 |
| Msa0661720 | Msa1398900 | 0.817831 | 2.688903e-52 | -8.615850e-47 |
| Msa0662580 | Msa1398900 | 0.988054 | 1.545093e-172 | -8.615850e-47 |
| Msa0696100 | Msa1398900 | 0.802036 | 6.788142e-49 | -8.615850e-47 |
| Msa0697010 | Msa1398900 | 0.818101 | 2.336703e-52 | -8.615850e-47 |
| Msa0697590 | Msa1398900 | 0.833573 | 4.934813e-56 | -8.615850e-47 |
| Msa0708300 | Msa1398900 | 0.811029 | 8.589138e-51 | -8.615850e-47 |
| Msa0708310 | Msa1398900 | 0.809677 | 1.681330e-50 | -8.615850e-47 |
| Msa0717860 | Msa1398900 | 0.816181 | 6.313507e-52 | -8.615850e-47 |
| Msa0723580 | Msa1398900 | 0.805706 | 1.172977e-49 | -8.615850e-47 |
| Msa0753930 | Msa1398900 | 0.811478 | 6.861141e-51 | -8.615850e-47 |
| Msa0758850 | Msa1398900 | 0.803591 | 3.239676e-49 | -8.615850e-47 |
| Msa0772740 | Msa1398900 | 0.806428 | 8.264768e-50 | -8.615850e-47 |
| Msa0780350 | Msa1398900 | 0.807620 | 4.625249e-50 | -8.615850e-47 |
| Msa0788660 | Msa1398900 | 0.813543 | 2.427645e-51 | -8.615850e-47 |
| Msa0805890 | Msa1398900 | 0.801581 | 8.416099e-49 | -8.615850e-47 |
| Msa0807020 | Msa1398900 | 0.819676 | 1.024739e-52 | -8.615850e-47 |
| Msa0822350 | Msa1398900 | 0.802541 | 5.342203e-49 | -8.615850e-47 |
| Msa0829050 | Msa1398900 | 0.830334 | 3.113655e-55 | -8.615850e-47 |
| Msa0832950 | Msa1398900 | 0.810070 | 1.383869e-50 | -8.615850e-47 |
| Msa0137560 | Msa1398900 | 0.827662 | 1.382117e-54 | -8.615850e-47 |
| Msa0137750 | Msa1398900 | 0.800780 | 1.227166e-48 | -8.615850e-47 |
| Msa0137860 | Msa1398900 | 0.828275 | 9.843881e-55 | -8.615850e-47 |
| Msa0151170 | Msa1398900 | 0.808927 | 2.435300e-50 | -8.615850e-47 |
| Msa0170770 | Msa1398900 | 0.809652 | 1.702572e-50 | -8.615850e-47 |
| Msa0180350 | Msa1398900 | 0.825278 | 5.114529e-54 | -8.615850e-47 |
| Msa0186320 | Msa1398900 | 0.817520 | 3.160238e-52 | -8.615850e-47 |
| Msa0187310 | Msa1398900 | 0.826758 | 2.275960e-54 | -8.615850e-47 |
| Msa0224130 | Msa1398900 | 0.815912 | 7.250555e-52 | -8.615850e-47 |
| Msa1225580 | Msa1398900 | 0.823658 | 1.230019e-53 | -8.615850e-47 |
| Msa1246790 | Msa1398900 | 0.830529 | 2.790181e-55 | -8.615850e-47 |
| Msa1256060 | Msa1398900 | 0.814986 | 1.164973e-51 | -8.615850e-47 |
| Msa1259860 | Msa1398900 | 0.812377 | 4.372294e-51 | -8.615850e-47 |
| Msa1286220 | Msa1398900 | 0.801957 | 7.045467e-49 | -8.615850e-47 |
| Msa1306830 | Msa1398900 | 0.809928 | 1.484811e-50 | -8.615850e-47 |
| Msa0377840 | Msa1398900 | 0.806151 | 9.455718e-50 | -8.615850e-47 |
| Msa0408340 | Msa1398900 | 0.826873 | 2.135912e-54 | -8.615850e-47 |
| Msa0426560 | Msa1398900 | 0.801754 | 7.755143e-49 | -8.615850e-47 |
| Msa0476770 | Msa1398900 | 0.813125 | 2.997939e-51 | -8.615850e-47 |
| Msa1017160 | Msa1398900 | 0.828454 | 8.908473e-55 | -8.615850e-47 |
| Msa1027910 | Msa1398900 | 0.802518 | 5.399933e-49 | -8.615850e-47 |
| Msa1030810 | Msa1398900 | 0.805865 | 1.086027e-49 | -8.615850e-47 |
| Msa1043120 | Msa1398900 | 0.838770 | 2.360715e-57 | -8.615850e-47 |
| Msa1069890 | Msa1398900 | 0.830425 | 2.958209e-55 | -8.615850e-47 |
| Msa1084640 | Msa1398900 | 0.814658 | 1.376962e-51 | -8.615850e-47 |
| Msa1084890 | Msa1398900 | 0.819416 | 1.175122e-52 | -8.615850e-47 |
| Msa1089190 | Msa1398900 | 0.819767 | 9.770915e-53 | -8.615850e-47 |
| Msa0257900 | Msa1398900 | 0.807400 | 5.150246e-50 | -8.615850e-47 |
| Msa0257910 | Msa1398900 | 0.806256 | 8.987192e-50 | -8.615850e-47 |
| Msa0260530 | Msa1398900 | 0.816934 | 4.280272e-52 | -8.615850e-47 |
| Msa0264680 | Msa1398900 | 0.820837 | 5.555150e-53 | -8.615850e-47 |
| Msa0265270 | Msa1398900 | 0.815263 | 1.011138e-51 | -8.615850e-47 |
| Msa0271540 | Msa1398900 | 0.801715 | 7.901540e-49 | -8.615850e-47 |
| Msa0296910 | Msa1398900 | 0.819339 | 1.223405e-52 | -8.615850e-47 |
| Msa0302730 | Msa1398900 | 0.819197 | 1.317694e-52 | -8.615850e-47 |
| Msa0335070 | Msa1398900 | 0.829135 | 6.096223e-55 | -8.615850e-47 |
| Msa0355550 | Msa1398900 | 0.805659 | 1.199879e-49 | -8.615850e-47 |
| Msa1109670 | Msa1398900 | 0.829951 | 3.861515e-55 | -8.615850e-47 |
| Msa1131790 | Msa1398900 | 0.833738 | 4.487189e-56 | -8.615850e-47 |
| Msa1132980 | Msa1398900 | 0.820636 | 6.177958e-53 | -8.615850e-47 |
| Msa0484800 | Msa1398900 | 0.805794 | 1.124102e-49 | -8.615850e-47 |
| Msa0501410 | Msa1398900 | 0.825592 | 4.310050e-54 | -8.615850e-47 |
| Msa0521130 | Msa1398900 | 0.806242 | 9.045085e-50 | -8.615850e-47 |
| Msa0524330 | Msa1398900 | 0.813406 | 2.600702e-51 | -8.615850e-47 |
| Msa0524440 | Msa1398900 | 0.824094 | 9.721322e-54 | -8.615850e-47 |
| Msa0536540 | Msa1398900 | 0.828128 | 1.068024e-54 | -8.615850e-47 |
| Msa0544640 | Msa1398900 | 0.805883 | 1.076766e-49 | -8.615850e-47 |
| Msa0574570 | Msa1398900 | 0.807017 | 6.207539e-50 | -8.615850e-47 |
| Msa0574580 | Msa1398900 | 0.812933 | 3.303531e-51 | -8.615850e-47 |
| Msa0574600 | Msa1398900 | 0.811475 | 6.871170e-51 | -8.615850e-47 |
| Msa0574730 | Msa1398900 | 0.812526 | 4.055592e-51 | -8.615850e-47 |
| Msa0577490 | Msa1398900 | 0.804066 | 2.581537e-49 | -8.615850e-47 |
| Msa0590390 | Msa1398900 | 0.805626 | 1.219079e-49 | -8.615850e-47 |
| Msa0592650 | Msa1398900 | 0.820785 | 5.709649e-53 | -8.615850e-47 |
| Msa0945130 | Msa1398900 | 0.819237 | 1.290246e-52 | -8.615850e-47 |
| Msa0964490 | Msa1398900 | 0.823738 | 1.178668e-53 | -8.615850e-47 |
| Msa0968050 | Msa1398900 | 0.803883 | 2.818714e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398900 | MtrunA17_Chr7g0271691 | 78.571 | 546 | 87 | 6 | 1 | 536 | 1 | 526 | 0.0 | 840 |
| Msa1398900 | MtrunA17_Chr7g0271681 | 49.587 | 484 | 205 | 14 | 86 | 535 | 6 | 484 | 3.86e-123 | 370 |
| Msa1398900 | MtrunA17_Chr7g0271671 | 37.407 | 540 | 291 | 19 | 17 | 522 | 21 | 547 | 1.85e-83 | 270 |
| Msa1398900 | MtrunA17_Chr4g0072691 | 40.060 | 332 | 186 | 8 | 51 | 372 | 21 | 349 | 1.73e-71 | 239 |
| Msa1398900 | MtrunA17_Chr2g0281171 | 37.249 | 349 | 199 | 9 | 51 | 385 | 54 | 396 | 7.26e-69 | 233 |
| Msa1398900 | MtrunA17_Chr4g0048161 | 37.861 | 346 | 201 | 8 | 51 | 385 | 53 | 395 | 2.08e-68 | 231 |
| Msa1398900 | MtrunA17_Chr2g0304831 | 35.248 | 383 | 231 | 9 | 20 | 388 | 17 | 396 | 1.49e-66 | 226 |
| Msa1398900 | MtrunA17_Chr8g0391211 | 37.340 | 391 | 228 | 10 | 21 | 399 | 89 | 474 | 2.64e-65 | 222 |
| Msa1398900 | MtrunA17_Chr6g0484111 | 37.067 | 375 | 220 | 9 | 52 | 415 | 51 | 420 | 4.48e-64 | 217 |
| Msa1398900 | MtrunA17_Chr6g0484131 | 37.822 | 349 | 202 | 8 | 52 | 389 | 51 | 395 | 2.85e-63 | 214 |
| Msa1398900 | MtrunA17_Chr4g0059411 | 32.278 | 474 | 277 | 17 | 81 | 522 | 74 | 535 | 4.54e-63 | 215 |
| Msa1398900 | MtrunA17_Chr6g0484121 | 37.931 | 348 | 203 | 8 | 52 | 389 | 51 | 395 | 1.53e-62 | 213 |
| Msa1398900 | MtrunA17_Chr8g0391221 | 37.666 | 377 | 218 | 10 | 35 | 399 | 32 | 403 | 2.26e-62 | 212 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398900 | AT5G57580.1 | 40.237 | 338 | 179 | 8 | 51 | 372 | 49 | 379 | 8.00e-72 | 241 |
| Msa1398900 | AT5G26920.3 | 37.533 | 381 | 205 | 11 | 19 | 381 | 3 | 368 | 1.37e-71 | 235 |
| Msa1398900 | AT5G26920.1 | 35.294 | 425 | 227 | 13 | 19 | 424 | 3 | 398 | 2.14e-70 | 236 |
| Msa1398900 | AT2G18750.3 | 37.879 | 330 | 194 | 6 | 51 | 372 | 55 | 381 | 7.88e-70 | 236 |
| Msa1398900 | AT2G18750.2 | 37.879 | 330 | 194 | 6 | 51 | 372 | 55 | 381 | 7.88e-70 | 236 |
| Msa1398900 | AT2G18750.1 | 37.879 | 330 | 194 | 6 | 51 | 372 | 55 | 381 | 7.88e-70 | 236 |
| Msa1398900 | AT4G25800.1 | 38.462 | 351 | 194 | 9 | 51 | 385 | 38 | 382 | 2.76e-69 | 234 |
| Msa1398900 | AT4G25800.2 | 38.462 | 351 | 194 | 9 | 51 | 385 | 38 | 382 | 2.76e-69 | 234 |
| Msa1398900 | AT4G31000.1 | 36.782 | 348 | 208 | 7 | 51 | 390 | 49 | 392 | 3.38e-67 | 227 |
| Msa1398900 | AT5G26920.2 | 34.670 | 424 | 223 | 13 | 19 | 424 | 3 | 390 | 4.45e-66 | 224 |
| Msa1398900 | AT1G73805.1 | 40.270 | 370 | 191 | 14 | 32 | 389 | 31 | 382 | 1.96e-63 | 214 |
| Msa1398900 | AT5G62570.2 | 35.279 | 377 | 218 | 11 | 16 | 381 | 2 | 363 | 1.25e-61 | 211 |
| Msa1398900 | AT5G62570.1 | 36.950 | 341 | 200 | 9 | 52 | 383 | 46 | 380 | 2.99e-61 | 210 |
| Msa1398900 | AT5G62570.4 | 38.438 | 320 | 182 | 9 | 52 | 362 | 46 | 359 | 3.48e-61 | 206 |
| Msa1398900 | AT2G24300.2 | 33.744 | 406 | 247 | 10 | 51 | 439 | 45 | 445 | 5.62e-61 | 211 |
| Msa1398900 | AT2G24300.3 | 33.744 | 406 | 247 | 10 | 51 | 439 | 49 | 449 | 7.06e-61 | 211 |
| Msa1398900 | AT2G24300.1 | 34.795 | 365 | 221 | 9 | 87 | 439 | 39 | 398 | 6.33e-60 | 207 |
| Msa1398900 | AT4G31000.2 | 34.211 | 342 | 197 | 8 | 57 | 390 | 50 | 371 | 1.80e-54 | 192 |
| Msa1398900 | AT5G62570.3 | 41.564 | 243 | 135 | 4 | 52 | 290 | 46 | 285 | 9.46e-51 | 176 |
Find 139 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAACCGGTTTGTGTGTTTA+AGG | 0.140276 | tig0022300:-68928 | Msa1398900:five_prime_UTR |
| CTGTTATCTTTGACCCTAAA+AGG | 0.177383 | tig0022300:+67560 | None:intergenic |
| TAATGATTATTAGTACTTTC+TGG | 0.200708 | tig0022300:-69064 | Msa1398900:five_prime_UTR |
| TGTGCACTTGATGGTGAATT+TGG | 0.208039 | tig0022300:-67818 | Msa1398900:CDS |
| AGCACGGAGGGAAATGTTTC+TGG | 0.220065 | tig0022300:+67430 | None:intergenic |
| CCATGTTGATGTCGATTTCT+AGG | 0.220863 | tig0022300:-65605 | Msa1398900:three_prime_UTR |
| ATCTTACACCACACTGCTTT+TGG | 0.264115 | tig0022300:+65711 | None:intergenic |
| ATTAATAAAACACAACTCTA+AGG | 0.270654 | tig0022300:+67979 | None:intergenic |
| CCTATGTCTGGCACTGGTTC+AGG | 0.279070 | tig0022300:+65954 | None:intergenic |
| GTTAATGAGGCTGGCAAATC+TGG | 0.282312 | tig0022300:-68010 | Msa1398900:CDS |
| CACTAGTAAAGTTCCTATTC+AGG | 0.307453 | tig0022300:-68718 | Msa1398900:CDS |
| AGCAGTGTGGTGTAAGATTT+TGG | 0.312366 | tig0022300:-65706 | Msa1398900:CDS |
| TTATATATATGAGCTACTTT+TGG | 0.319519 | tig0022300:-68897 | Msa1398900:five_prime_UTR |
| AATGATTATTAGTACTTTCT+GGG | 0.340291 | tig0022300:-69063 | Msa1398900:five_prime_UTR |
| ACCTTGAAGATTGGAGCTCT+TGG | 0.340354 | tig0022300:+68340 | None:intergenic |
| TATACATGCAGCCAGGCTTA+TGG | 0.346862 | tig0022300:+66463 | None:intergenic |
| GAATGACCACCTTGTGTAAC+TGG | 0.352383 | tig0022300:+65861 | None:intergenic |
| ATGTACCCGTTACAGAATTA+AGG | 0.352946 | tig0022300:+65748 | None:intergenic |
| ATCATCATTGACTGACTAAT+AGG | 0.355202 | tig0022300:+68983 | None:intergenic |
| AAACTAATAATAAGTCATCT+AGG | 0.361221 | tig0022300:+65546 | None:intergenic |
| CAGTCAATGATGATGCTTCC+TGG | 0.375759 | tig0022300:-68974 | Msa1398900:five_prime_UTR |
| GCAAAATGGAGAAAACATTA+AGG | 0.381257 | tig0022300:-67597 | Msa1398900:CDS |
| TCTTTACTGATAATTCTAGA+TGG | 0.382196 | tig0022300:-67658 | Msa1398900:CDS |
| ATACCTGATTGGTGCTTGTT+TGG | 0.383490 | tig0022300:+68671 | None:intergenic |
| CTTTACTGTTATGAGACAAT+TGG | 0.386485 | tig0022300:-66782 | Msa1398900:CDS |
| TTTAGTAAAGCTTCATCAAC+TGG | 0.387419 | tig0022300:+66488 | None:intergenic |
| GAATTCCTTAATTCTGTAAC+GGG | 0.390082 | tig0022300:-65753 | Msa1398900:CDS |
| ATAGCATTGAATAGCAATAT+TGG | 0.390446 | tig0022300:+66755 | None:intergenic |
| TAACCGGTTTGTGTGTTTAA+GGG | 0.393873 | tig0022300:-68927 | Msa1398900:five_prime_UTR |
| TCCAAGAGCTCCAATCTTCA+AGG | 0.401863 | tig0022300:-68341 | Msa1398900:intron |
| CCATGGAATTCACACTGTTA+AGG | 0.409131 | tig0022300:-67340 | Msa1398900:CDS |
| GGAGTCAAAGCTGTGCAAAA+TGG | 0.409392 | tig0022300:-67611 | Msa1398900:CDS |
| GATCTTGTGACAATGATGAT+TGG | 0.410580 | tig0022300:-67796 | Msa1398900:CDS |
| TGTGGTATGTCCCCTATGTC+TGG | 0.415325 | tig0022300:+65942 | None:intergenic |
| TTTACTGTTATGAGACAATT+GGG | 0.419841 | tig0022300:-66781 | Msa1398900:CDS |
| ATAGAGATTTGTGCACTTGA+TGG | 0.424464 | tig0022300:-67827 | Msa1398900:CDS |
| TTGAAGGGGTCGTTCATCAT+TGG | 0.427765 | tig0022300:+67913 | None:intergenic |
| TTGATGAAAATTGCTAAAGA+TGG | 0.432333 | tig0022300:-67387 | Msa1398900:CDS |
| ACCCTCTCTCCAACCAATAG+TGG | 0.433799 | tig0022300:+67722 | None:intergenic |
| CTAGATTTAGAATCCTGAAT+AGG | 0.450367 | tig0022300:+68705 | None:intergenic |
| GTCTTGGAAACTTTCATTCG+AGG | 0.454610 | tig0022300:-68521 | Msa1398900:CDS |
| CGTGCTTGAATGATGATGTT+TGG | 0.457684 | tig0022300:-67413 | Msa1398900:CDS |
| ATGCTGGGCGTGAGAGCCTC+TGG | 0.465592 | tig0022300:+66686 | None:intergenic |
| ACGAATTTGATGCAGAGAAA+AGG | 0.477102 | tig0022300:-68032 | Msa1398900:intron |
| CAGTTCGGAGCTCCAGTTCA+AGG | 0.477807 | tig0022300:-66428 | Msa1398900:intron |
| TGCATTGCTAGTCAACTAAC+CGG | 0.481144 | tig0022300:-68943 | Msa1398900:five_prime_UTR |
| CTCTATCTTTATTGAGGACA+AGG | 0.481528 | tig0022300:+67844 | None:intergenic |
| AATACATGTATATACCTGAT+TGG | 0.482459 | tig0022300:+68660 | None:intergenic |
| TCATTCAACGTTTACTATGT+TGG | 0.485218 | tig0022300:-65416 | Msa1398900:three_prime_UTR |
| AAAACACAACTCTAAGGGTC+TGG | 0.487434 | tig0022300:+67985 | None:intergenic |
| CAAGTTGCTCTATATGATGT+TGG | 0.489331 | tig0022300:-67893 | Msa1398900:CDS |
| ATATGTTGCAGACCTTGAAC+TGG | 0.491841 | tig0022300:+66416 | None:intergenic |
| ATCAATGAATCTTCATTACA+TGG | 0.491857 | tig0022300:-67297 | Msa1398900:CDS |
| GCCACTATTGGTTGGAGAGA+GGG | 0.492108 | tig0022300:-67723 | Msa1398900:CDS |
| TATGTGGAGATGCAGATGTT+TGG | 0.492130 | tig0022300:-66875 | Msa1398900:intron |
| CATCATATAGAGCAACTTGA+AGG | 0.495387 | tig0022300:+67897 | None:intergenic |
| AGATGGTAAAGAGCCACTAT+TGG | 0.496080 | tig0022300:-67735 | Msa1398900:CDS |
| ACAAATCTCTATCTTTATTG+AGG | 0.498800 | tig0022300:+67838 | None:intergenic |
| CTGAACCAGTGCCAGACATA+GGG | 0.500041 | tig0022300:-65953 | Msa1398900:CDS |
| CAACCCTTAAACACACAAAC+CGG | 0.501300 | tig0022300:+68924 | None:intergenic |
| CCTTAACAGTGTGAATTCCA+TGG | 0.504428 | tig0022300:+67340 | None:intergenic |
| TAAATTTATACCTTCATGCT+GGG | 0.505216 | tig0022300:+66671 | None:intergenic |
| ATGTCCCCTATGTCTGGCAC+TGG | 0.505649 | tig0022300:+65948 | None:intergenic |
| TTTCAAAGATCTCAACTAAG+TGG | 0.505681 | tig0022300:+68846 | None:intergenic |
| TGAGGAAGGTTACAGCTGGC+AGG | 0.507106 | tig0022300:-65659 | Msa1398900:CDS |
| AATGCTATCTACAAACTTGT+GGG | 0.508181 | tig0022300:-66740 | Msa1398900:CDS |
| ATAAATTTATACCTTCATGC+TGG | 0.509328 | tig0022300:+66670 | None:intergenic |
| CAATGCTATCTACAAACTTG+TGG | 0.510388 | tig0022300:-66741 | Msa1398900:CDS |
| GCAAGATTCAGAATAAGTCT+TGG | 0.511326 | tig0022300:-66853 | Msa1398900:CDS |
| TGAATTCCTTAATTCTGTAA+CGG | 0.512284 | tig0022300:-65754 | Msa1398900:CDS |
| TTACCAAACAAGCACCAATC+AGG | 0.513446 | tig0022300:-68674 | Msa1398900:intron |
| CATGGGAAGAGAGGCGCTTG+TGG | 0.515894 | tig0022300:+67358 | None:intergenic |
| CCTGAACCAGTGCCAGACAT+AGG | 0.516191 | tig0022300:-65954 | Msa1398900:CDS |
| ATCATCAACAACACACGACT+TGG | 0.516898 | tig0022300:+66811 | None:intergenic |
| ATGCAGAGAAAAGGTTAATG+AGG | 0.520369 | tig0022300:-68023 | Msa1398900:intron |
| AGAGAAAAGGTTAATGAGGC+TGG | 0.522837 | tig0022300:-68019 | Msa1398900:CDS |
| CACAAGCGCCTCTCTTCCCA+TGG | 0.528668 | tig0022300:-67357 | Msa1398900:CDS |
| AACATGGATTATGAAACAAC+AGG | 0.528764 | tig0022300:+65621 | None:intergenic |
| GAATTGATGTATGTGAGTAT+TGG | 0.545271 | tig0022300:+68872 | None:intergenic |
| ATACAATCTGCAGGACAGTT+CGG | 0.545478 | tig0022300:-66443 | Msa1398900:CDS |
| GAAATAGGTAAGAGAGGTGG+TGG | 0.545642 | tig0022300:-68373 | Msa1398900:intron |
| AACTAATAATAAGTCATCTA+GGG | 0.547340 | tig0022300:+65547 | None:intergenic |
| TCTAAGTCAATAGTCAATGA+TGG | 0.548532 | tig0022300:-67869 | Msa1398900:CDS |
| TAGCAATGCAGGAAGAAGCC+AGG | 0.550038 | tig0022300:+68956 | None:intergenic |
| TTTGGTAGAAATCGTGAAGC+GGG | 0.551849 | tig0022300:-66540 | Msa1398900:CDS |
| GGCTCTCACGCCCAGCATGA+AGG | 0.552026 | tig0022300:-66681 | Msa1398900:intron |
| GGAAACTTTCATTCGAGGAG+TGG | 0.553231 | tig0022300:-68516 | Msa1398900:intron |
| TAATGGTCACAATTCCGTCT+TGG | 0.556758 | tig0022300:-68537 | Msa1398900:CDS |
| AACGTGCCTATGCGAAAACT+AGG | 0.568846 | tig0022300:-65579 | Msa1398900:three_prime_UTR |
| ATACATGGTTGAACATAGCC+TGG | 0.571247 | tig0022300:+66005 | None:intergenic |
| CTTAACAGTGTGAATTCCAT+GGG | 0.572345 | tig0022300:+67341 | None:intergenic |
| TTTACTAAACTCCATAAGCC+TGG | 0.573032 | tig0022300:-66474 | Msa1398900:CDS |
| ATGGGGAATATCAGTGAGGA+AGG | 0.573698 | tig0022300:-65673 | Msa1398900:CDS |
| GGTAAAGAGCCACTATTGGT+TGG | 0.573749 | tig0022300:-67731 | Msa1398900:CDS |
| GCTGCATGTATACAATCTGC+AGG | 0.574643 | tig0022300:-66452 | Msa1398900:CDS |
| TTCCTCCTCTTGATACAACA+TGG | 0.574962 | tig0022300:-65818 | Msa1398900:CDS |
| CATCATCATTCAAGCACGGA+GGG | 0.575885 | tig0022300:+67418 | None:intergenic |
| ATCATATAGAGCAACTTGAA+GGG | 0.577434 | tig0022300:+67898 | None:intergenic |
| TTAATAAAACACAACTCTAA+GGG | 0.578436 | tig0022300:+67980 | None:intergenic |
| AAAGATCTCAACTAAGTGGA+AGG | 0.580415 | tig0022300:+68850 | None:intergenic |
| GGTTAGTTGACTAGCAATGC+AGG | 0.581291 | tig0022300:+68945 | None:intergenic |
| AATTCCCATGTTGTATCAAG+AGG | 0.581818 | tig0022300:+65813 | None:intergenic |
| AGCCACTATTGGTTGGAGAG+AGG | 0.585245 | tig0022300:-67724 | Msa1398900:CDS |
| CAGATTGTATACATGCAGCC+AGG | 0.588136 | tig0022300:+66456 | None:intergenic |
| AATAAATTACGTGAAAGAGA+TGG | 0.588816 | tig0022300:-67752 | Msa1398900:CDS |
| CGGAGGGAAATGTTTCTGGT+AGG | 0.589550 | tig0022300:+67434 | None:intergenic |
| TGTGAATTCCATGGGAAGAG+AGG | 0.590779 | tig0022300:+67349 | None:intergenic |
| TCAGTGAGGAAGGTTACAGC+TGG | 0.591106 | tig0022300:-65663 | Msa1398900:CDS |
| CAGGATTCTAAATCTAGTCA+TGG | 0.592340 | tig0022300:-68699 | Msa1398900:CDS |
| TCAATGAATCTTCATTACAT+GGG | 0.595745 | tig0022300:-67296 | Msa1398900:CDS |
| CCTAGAAATCGACATCAACA+TGG | 0.596881 | tig0022300:+65605 | None:intergenic |
| AAATGGAGAAAACATTAAGG+AGG | 0.607132 | tig0022300:-67594 | Msa1398900:CDS |
| CTTCCTGAAATAGGTAAGAG+AGG | 0.613677 | tig0022300:-68379 | Msa1398900:intron |
| TCCCATGTTGTATCAAGAGG+AGG | 0.619268 | tig0022300:+65816 | None:intergenic |
| TCTATCTTTATTGAGGACAA+GGG | 0.621258 | tig0022300:+67845 | None:intergenic |
| TATATTGAAAGAGATAGTCA+TGG | 0.621398 | tig0022300:-65894 | Msa1398900:CDS |
| TCATATAGAGCAACTTGAAG+GGG | 0.631197 | tig0022300:+67899 | None:intergenic |
| CGCTTTCCAGTTACACAAGG+TGG | 0.631517 | tig0022300:-65867 | Msa1398900:CDS |
| TCCTCCTCTTGATACAACAT+GGG | 0.634734 | tig0022300:-65817 | Msa1398900:CDS |
| AATGGAGAAAACATTAAGGA+GGG | 0.635759 | tig0022300:-67593 | Msa1398900:CDS |
| CAATGAATCTTCATTACATG+GGG | 0.638374 | tig0022300:-67295 | Msa1398900:intron |
| ACATATGAAGTAGAGATACA+TGG | 0.644934 | tig0022300:+65990 | None:intergenic |
| TCGAATGAAAGTTTCCAAGA+CGG | 0.646268 | tig0022300:+68523 | None:intergenic |
| CATACCACAAAACAATCATG+TGG | 0.650909 | tig0022300:-65928 | Msa1398900:CDS |
| ACTGCAATTGAAATTGAACA+AGG | 0.654844 | tig0022300:+65498 | None:intergenic |
| TAACGGGTACATCCAGCAGT+GGG | 0.667423 | tig0022300:-65737 | Msa1398900:CDS |
| ATTTGGTAGAAATCGTGAAG+CGG | 0.672652 | tig0022300:-66541 | Msa1398900:CDS |
| TGAACCAGTGCCAGACATAG+GGG | 0.674455 | tig0022300:-65952 | Msa1398900:CDS |
| CAAACATCATCATTCAAGCA+CGG | 0.676398 | tig0022300:+67414 | None:intergenic |
| TCACGCTTTCCAGTTACACA+AGG | 0.677418 | tig0022300:-65870 | Msa1398900:CDS |
| GTAACGGGTACATCCAGCAG+TGG | 0.683061 | tig0022300:-65738 | Msa1398900:CDS |
| GGAAGGTTACAGCTGGCAGG+AGG | 0.688084 | tig0022300:-65656 | Msa1398900:CDS |
| TTTAGGGTCAAAGATAACAG+AGG | 0.702670 | tig0022300:-67557 | Msa1398900:CDS |
| ATACCACAAAACAATCATGT+GGG | 0.707427 | tig0022300:-65927 | Msa1398900:CDS |
| CCTGAAATAGGTAAGAGAGG+TGG | 0.708938 | tig0022300:-68376 | Msa1398900:intron |
| ACATCATCATTCAAGCACGG+AGG | 0.723427 | tig0022300:+67417 | None:intergenic |
| ACAAAATTACTATCTACCAG+AGG | 0.728103 | tig0022300:-66702 | Msa1398900:CDS |
| TCAAATGGGGAATATCAGTG+AGG | 0.743416 | tig0022300:-65677 | Msa1398900:CDS |
| GTGGGAAACCAAAAGCAGTG+TGG | 0.743980 | tig0022300:-65719 | Msa1398900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTGTATAATACTTTTTTT+TGG | - | tig0022300:65806-65825 | Msa1398900:CDS | 10.0% |
| !!! | ATGTATAAATTTATTTTAAC+AGG | + | tig0022300:68992-69011 | None:intergenic | 10.0% |
| !!! | ATATTACATAATATTTTTAC+AGG | + | tig0022300:69065-69084 | None:intergenic | 10.0% |
| !!! | TTAAATTGTAGTAACATTTT+TGG | - | tig0022300:65660-65679 | Msa1398900:CDS | 15.0% |
| !! | CAAGAATAAATTAAAAACAA+GGG | + | tig0022300:66015-66034 | None:intergenic | 15.0% |
| !! | TCAAGAATAAATTAAAAACA+AGG | + | tig0022300:66016-66035 | None:intergenic | 15.0% |
| !! | TCTATATCTATTGTAAAATT+GGG | + | tig0022300:66277-66296 | None:intergenic | 15.0% |
| !! | AACAATAATAATGTTGAATA+CGG | + | tig0022300:66372-66391 | None:intergenic | 15.0% |
| !! | ATAGATTTAAAGAAAAACTT+TGG | - | tig0022300:67818-67837 | Msa1398900:CDS | 15.0% |
| !! | ACAAATAGAAAAATAAACAA+CGG | + | tig0022300:68092-68111 | None:intergenic | 15.0% |
| !! | ATGGAATAATATTAATATTG+TGG | + | tig0022300:68248-68267 | None:intergenic | 15.0% |
| !!! | TATAAATTTATTTTAACAGG+AGG | + | tig0022300:68989-69008 | None:intergenic | 15.0% |
| !! | TAATGATTATTAGTACTTTC+TGG | - | tig0022300:65375-65394 | Msa1398900:three_prime_UTR | 20.0% |
| !! | AATGATTATTAGTACTTTCT+GGG | - | tig0022300:65376-65395 | Msa1398900:three_prime_UTR | 20.0% |
| !!! | TTATATATATGAGCTACTTT+TGG | - | tig0022300:65542-65561 | Msa1398900:three_prime_UTR | 20.0% |
| !! | CACTTTAAATTTAATCTTCT+TGG | - | tig0022300:65835-65854 | Msa1398900:CDS | 20.0% |
| !! | GTTATGTGATAAAAACTTTA+AGG | - | tig0022300:65877-65896 | Msa1398900:CDS | 20.0% |
| !!! | ATAAAAACTTTAAGGACTAA+TGG | - | tig0022300:65885-65904 | Msa1398900:CDS | 20.0% |
| !! | GTAATTCAATATTTAGTGTA+TGG | - | tig0022300:66166-66185 | Msa1398900:intron | 20.0% |
| !! | GTCTATATCTATTGTAAAAT+TGG | + | tig0022300:66278-66297 | None:intergenic | 20.0% |
| !! | TTAATAAAACACAACTCTAA+GGG | + | tig0022300:66462-66481 | None:intergenic | 20.0% |
| !! | ATTAATAAAACACAACTCTA+AGG | + | tig0022300:66463-66482 | None:intergenic | 20.0% |
| !! | TATGTTAAGACAAGTAAAAA+TGG | - | tig0022300:67258-67277 | Msa1398900:intron | 20.0% |
| !! | TAGAAGAGGTAAATTATATA+GGG | + | tig0022300:67348-67367 | None:intergenic | 20.0% |
| !!! | GTTAATTGGATATTTTTATG+TGG | - | tig0022300:67548-67567 | Msa1398900:intron | 20.0% |
| !!! | TTGACAACATATTTTGAATA+TGG | + | tig0022300:67798-67817 | None:intergenic | 20.0% |
| !!! | ATTTTATAAAATTACTGAGC+AGG | - | tig0022300:67856-67875 | Msa1398900:CDS | 20.0% |
| !! | CAAATAGAAAAATAAACAAC+GGG | + | tig0022300:68091-68110 | None:intergenic | 20.0% |
| !! | TGCAATATAAAATACAAGTA+AGG | + | tig0022300:68152-68171 | None:intergenic | 20.0% |
| !!! | TGAAATATTTTACCATATCT+TGG | - | tig0022300:68390-68409 | Msa1398900:intron | 20.0% |
| !! | AACTAATAATAAGTCATCTA+GGG | + | tig0022300:68895-68914 | None:intergenic | 20.0% |
| !! | AAACTAATAATAAGTCATCT+AGG | + | tig0022300:68896-68915 | None:intergenic | 20.0% |
| !!! | ACTTATTATTAGTTTTGTGT+TGG | - | tig0022300:68901-68920 | Msa1398900:five_prime_UTR | 20.0% |
| ! | GAGATTCTTACAAAAAGAAA+AGG | - | tig0022300:65625-65644 | Msa1398900:three_prime_UTR | 25.0% |
| !!! | ATTGTAGTAACATTTTTGGA+TGG | - | tig0022300:65664-65683 | Msa1398900:CDS | 25.0% |
| ! | AATACATGTATATACCTGAT+TGG | + | tig0022300:65782-65801 | None:intergenic | 25.0% |
| !! | AAGTTTTTATCACATAACCA+AGG | + | tig0022300:65875-65894 | None:intergenic | 25.0% |
| ! | TTTGTTCTATAATGTTGAGA+AGG | - | tig0022300:65969-65988 | Msa1398900:CDS | 25.0% |
| ! | TTCATTTATCTTCCTGAAAT+AGG | - | tig0022300:66051-66070 | Msa1398900:intron | 25.0% |
| ! | AAAAAACAAACCTTGAAGAT+TGG | + | tig0022300:66111-66130 | None:intergenic | 25.0% |
| ! | CACCTTCTATGAAAATATTA+TGG | - | tig0022300:66241-66260 | Msa1398900:intron | 25.0% |
| !! | CACCATAATATTTTCATAGA+AGG | + | tig0022300:66246-66265 | None:intergenic | 25.0% |
| ! | ATGAAAATATTATGGTGCTT+TGG | - | tig0022300:66249-66268 | Msa1398900:intron | 25.0% |
| ! | ATAATGTTGAATACGGTAAA+GGG | + | tig0022300:66365-66384 | None:intergenic | 25.0% |
| ! | AATAATGTTGAATACGGTAA+AGG | + | tig0022300:66366-66385 | None:intergenic | 25.0% |
| ! | ACAAATCTCTATCTTTATTG+AGG | + | tig0022300:66604-66623 | None:intergenic | 25.0% |
| ! | AATAAATTACGTGAAAGAGA+TGG | - | tig0022300:66687-66706 | Msa1398900:CDS | 25.0% |
| !!! | AGTAAAGATGATTTTAGAGA+TGG | + | tig0022300:66769-66788 | None:intergenic | 25.0% |
| ! | TCTTTACTGATAATTCTAGA+TGG | - | tig0022300:66781-66800 | Msa1398900:CDS | 25.0% |
| !! | TGTCTTATGACATGTAATTT+TGG | - | tig0022300:66973-66992 | Msa1398900:intron | 25.0% |
| ! | TTGATGAAAATTGCTAAAGA+TGG | - | tig0022300:67052-67071 | Msa1398900:intron | 25.0% |
| ! | ATCAATGAATCTTCATTACA+TGG | - | tig0022300:67142-67161 | Msa1398900:intron | 25.0% |
| ! | TCAATGAATCTTCATTACAT+GGG | - | tig0022300:67143-67162 | Msa1398900:intron | 25.0% |
| ! | TTATCGTATGTGTTAATGAT+TGG | - | tig0022300:67194-67213 | Msa1398900:intron | 25.0% |
| ! | CTAGAAGAGGTAAATTATAT+AGG | + | tig0022300:67349-67368 | None:intergenic | 25.0% |
| !!! | GAATGAAAAAGTTGATATTC+TGG | - | tig0022300:67383-67402 | Msa1398900:CDS | 25.0% |
| ! | TGTAAAATGCGTATGTTAAT+TGG | - | tig0022300:67534-67553 | Msa1398900:intron | 25.0% |
| ! | TTTACTGTTATGAGACAATT+GGG | - | tig0022300:67658-67677 | Msa1398900:CDS | 25.0% |
| !! | ATAGCATTGAATAGCAATAT+TGG | + | tig0022300:67687-67706 | None:intergenic | 25.0% |
| ! | TAAATTTATACCTTCATGCT+GGG | + | tig0022300:67771-67790 | None:intergenic | 25.0% |
| ! | ATAAATTTATACCTTCATGC+TGG | + | tig0022300:67772-67791 | None:intergenic | 25.0% |
| ! | GTATTCAATTCAAGCATAAA+AGG | - | tig0022300:68065-68084 | Msa1398900:intron | 25.0% |
| !!! | CCACTTTTATTAGTAGTTAT+TGG | + | tig0022300:68116-68135 | None:intergenic | 25.0% |
| ! | CCAATAACTACTAATAAAAG+TGG | - | tig0022300:68113-68132 | Msa1398900:intron | 25.0% |
| ! | AGGTTTGTCAAAGTTTAATA+TGG | + | tig0022300:68267-68286 | None:intergenic | 25.0% |
| !! | TTATATCTCTTGTCCTATTT+TGG | - | tig0022300:68336-68355 | Msa1398900:intron | 25.0% |
| ! | TATATTGAAAGAGATAGTCA+TGG | - | tig0022300:68545-68564 | Msa1398900:CDS | 25.0% |
| ! | TGAATTCCTTAATTCTGTAA+CGG | - | tig0022300:68685-68704 | Msa1398900:CDS | 25.0% |
| !! | GTACTTTCTGGGAATTTTTA+TGG | - | tig0022300:65387-65406 | Msa1398900:three_prime_UTR | 30.0% |
| ! | ATCATCATTGACTGACTAAT+AGG | + | tig0022300:65459-65478 | None:intergenic | 30.0% |
| GAATTGATGTATGTGAGTAT+TGG | + | tig0022300:65570-65589 | None:intergenic | 30.0% | |
| TTTCAAAGATCTCAACTAAG+TGG | + | tig0022300:65596-65615 | None:intergenic | 30.0% | |
| ! | CTAGATTTAGAATCCTGAAT+AGG | + | tig0022300:65737-65756 | None:intergenic | 30.0% |
| GAAGGATTGTTTAAATTGCA+AGG | - | tig0022300:65987-66006 | Msa1398900:CDS | 30.0% | |
| ! | TACCTGATCCAATTTTTACT+CGG | - | tig0022300:66490-66509 | Msa1398900:CDS | 30.0% |
| ATATCAGACCGAGTAAAAAT+TGG | + | tig0022300:66501-66520 | None:intergenic | 30.0% | |
| ATCATATAGAGCAACTTGAA+GGG | + | tig0022300:66544-66563 | None:intergenic | 30.0% | |
| TCTAAGTCAATAGTCAATGA+TGG | - | tig0022300:66570-66589 | Msa1398900:intron | 30.0% | |
| TCTATCTTTATTGAGGACAA+GGG | + | tig0022300:66597-66616 | None:intergenic | 30.0% | |
| AGGGTTATTACTCTCAAAAA+TGG | - | tig0022300:66735-66754 | Msa1398900:CDS | 30.0% | |
| GCAAAATGGAGAAAACATTA+AGG | - | tig0022300:66842-66861 | Msa1398900:CDS | 30.0% | |
| AAATGGAGAAAACATTAAGG+AGG | - | tig0022300:66845-66864 | Msa1398900:CDS | 30.0% | |
| AATGGAGAAAACATTAAGGA+GGG | - | tig0022300:66846-66865 | Msa1398900:CDS | 30.0% | |
| CAATGAATCTTCATTACATG+GGG | - | tig0022300:67144-67163 | Msa1398900:intron | 30.0% | |
| TTTGCATATTGTCTATCCTA+TGG | - | tig0022300:67226-67245 | Msa1398900:intron | 30.0% | |
| TAACATATGCAATACTCCAT+AGG | + | tig0022300:67245-67264 | None:intergenic | 30.0% | |
| ! | CTACATCGATTATTTCACTT+TGG | + | tig0022300:67492-67511 | None:intergenic | 30.0% |
| CTTTACTGTTATGAGACAAT+TGG | - | tig0022300:67657-67676 | Msa1398900:CDS | 30.0% | |
| AATGCTATCTACAAACTTGT+GGG | - | tig0022300:67699-67718 | Msa1398900:CDS | 30.0% | |
| ACAAAATTACTATCTACCAG+AGG | - | tig0022300:67737-67756 | Msa1398900:CDS | 30.0% | |
| TTTAGTAAAGCTTCATCAAC+TGG | + | tig0022300:67954-67973 | None:intergenic | 30.0% | |
| ! | AGGTCTATGTTTTATCTTGT+GGG | + | tig0022300:68182-68201 | None:intergenic | 30.0% |
| ! | TATTTTACCATATCTTGGAC+AGG | - | tig0022300:68395-68414 | Msa1398900:intron | 30.0% |
| ACATATGAAGTAGAGATACA+TGG | + | tig0022300:68452-68471 | None:intergenic | 30.0% | |
| ATACCACAAAACAATCATGT+GGG | - | tig0022300:68512-68531 | Msa1398900:intron | 30.0% | |
| GAATTCCTTAATTCTGTAAC+GGG | - | tig0022300:68686-68705 | Msa1398900:CDS | 30.0% | |
| !!! | AGATTTTGGCTGTTATCAAA+TGG | - | tig0022300:68747-68766 | Msa1398900:CDS | 30.0% |
| !!! | GATTTTGGCTGTTATCAAAT+GGG | - | tig0022300:68748-68767 | Msa1398900:CDS | 30.0% |
| !!! | ATTTTGGCTGTTATCAAATG+GGG | - | tig0022300:68749-68768 | Msa1398900:CDS | 30.0% |
| ! | AACATGGATTATGAAACAAC+AGG | + | tig0022300:68821-68840 | None:intergenic | 30.0% |
| ACTGCAATTGAAATTGAACA+AGG | + | tig0022300:68944-68963 | None:intergenic | 30.0% | |
| TCATTCAACGTTTACTATGT+TGG | - | tig0022300:69023-69042 | Msa1398900:five_prime_UTR | 30.0% | |
| !! | TAACCGGTTTGTGTGTTTAA+GGG | - | tig0022300:65512-65531 | Msa1398900:three_prime_UTR | 35.0% |
| AAAGATCTCAACTAAGTGGA+AGG | + | tig0022300:65592-65611 | None:intergenic | 35.0% | |
| !! | ATTTTTGGATGGTATCAGAC+AGG | - | tig0022300:65675-65694 | Msa1398900:CDS | 35.0% |
| CACTAGTAAAGTTCCTATTC+AGG | - | tig0022300:65721-65740 | Msa1398900:CDS | 35.0% | |
| CAGGATTCTAAATCTAGTCA+TGG | - | tig0022300:65740-65759 | Msa1398900:CDS | 35.0% | |
| !! | TCTTCTTGGTTATTTTGCAG+TGG | - | tig0022300:65849-65868 | Msa1398900:CDS | 35.0% |
| TCGAATGAAAGTTTCCAAGA+CGG | + | tig0022300:65919-65938 | None:intergenic | 35.0% | |
| ACGAATTTGATGCAGAGAAA+AGG | - | tig0022300:66407-66426 | Msa1398900:intron | 35.0% | |
| ATGCAGAGAAAAGGTTAATG+AGG | - | tig0022300:66416-66435 | Msa1398900:intron | 35.0% | |
| TCATATAGAGCAACTTGAAG+GGG | + | tig0022300:66543-66562 | None:intergenic | 35.0% | |
| CATCATATAGAGCAACTTGA+AGG | + | tig0022300:66545-66564 | None:intergenic | 35.0% | |
| CAAGTTGCTCTATATGATGT+TGG | - | tig0022300:66546-66565 | Msa1398900:intron | 35.0% | |
| CTCTATCTTTATTGAGGACA+AGG | + | tig0022300:66598-66617 | None:intergenic | 35.0% | |
| ATAGAGATTTGTGCACTTGA+TGG | - | tig0022300:66612-66631 | Msa1398900:intron | 35.0% | |
| GATCTTGTGACAATGATGAT+TGG | - | tig0022300:66643-66662 | Msa1398900:intron | 35.0% | |
| GGTTAAGATGCAAAAAGTTC+AGG | - | tig0022300:66802-66821 | Msa1398900:CDS | 35.0% | |
| ! | AGATGCAAAAAGTTCAGGTT+AGG | - | tig0022300:66807-66826 | Msa1398900:CDS | 35.0% |
| CTGTTATCTTTGACCCTAAA+AGG | + | tig0022300:66882-66901 | None:intergenic | 35.0% | |
| ! | TTTAGGGTCAAAGATAACAG+AGG | - | tig0022300:66882-66901 | Msa1398900:intron | 35.0% |
| CAAACATCATCATTCAAGCA+CGG | + | tig0022300:67028-67047 | None:intergenic | 35.0% | |
| CTTAACAGTGTGAATTCCAT+GGG | + | tig0022300:67101-67120 | None:intergenic | 35.0% | |
| ! | TGATTACTTCACTCTAGAAG+AGG | + | tig0022300:67362-67381 | None:intergenic | 35.0% |
| GCAAGATTCAGAATAAGTCT+TGG | - | tig0022300:67586-67605 | Msa1398900:CDS | 35.0% | |
| CAATGCTATCTACAAACTTG+TGG | - | tig0022300:67698-67717 | Msa1398900:CDS | 35.0% | |
| ATTTGGTAGAAATCGTGAAG+CGG | - | tig0022300:67898-67917 | Msa1398900:CDS | 35.0% | |
| TTTACTAAACTCCATAAGCC+TGG | - | tig0022300:67965-67984 | Msa1398900:CDS | 35.0% | |
| ! | CAGGTCTATGTTTTATCTTG+TGG | + | tig0022300:68183-68202 | None:intergenic | 35.0% |
| CACAAGATAAAACATAGACC+TGG | - | tig0022300:68181-68200 | Msa1398900:intron | 35.0% | |
| ! | ACATAGACCTGGTGAAATTT+TGG | - | tig0022300:68192-68211 | Msa1398900:intron | 35.0% |
| TGATACACCAAAATTTCACC+AGG | + | tig0022300:68202-68221 | None:intergenic | 35.0% | |
| !! | GGTGAAATTTTGGTGTATCA+TGG | - | tig0022300:68202-68221 | Msa1398900:intron | 35.0% |
| !! | ATTTTGGTGTATCATGGCAT+TGG | - | tig0022300:68208-68227 | Msa1398900:intron | 35.0% |
| GTTTAGTGAATGACACAGAA+AGG | + | tig0022300:68287-68306 | None:intergenic | 35.0% | |
| AAATGTCCAACATTAAGAGC+AGG | + | tig0022300:68367-68386 | None:intergenic | 35.0% | |
| ! | TTTTTGACCTGTCCAAGATA+TGG | + | tig0022300:68405-68424 | None:intergenic | 35.0% |
| TGGACAGGTCAAAAAGAAAT+AGG | - | tig0022300:68410-68429 | Msa1398900:intron | 35.0% | |
| GGACAGGTCAAAAAGAAATA+GGG | - | tig0022300:68411-68430 | Msa1398900:intron | 35.0% | |
| CATACCACAAAACAATCATG+TGG | - | tig0022300:68511-68530 | Msa1398900:intron | 35.0% | |
| AATTCCCATGTTGTATCAAG+AGG | + | tig0022300:68629-68648 | None:intergenic | 35.0% | |
| ATGTACCCGTTACAGAATTA+AGG | + | tig0022300:68694-68713 | None:intergenic | 35.0% | |
| !! | ATGTATCCTAGTTTTCGCAT+AGG | + | tig0022300:68869-68888 | None:intergenic | 35.0% |
| TGCATTGCTAGTCAACTAAC+CGG | - | tig0022300:65496-65515 | Msa1398900:three_prime_UTR | 40.0% | |
| !! | CTAACCGGTTTGTGTGTTTA+AGG | - | tig0022300:65511-65530 | Msa1398900:three_prime_UTR | 40.0% |
| CAACCCTTAAACACACAAAC+CGG | + | tig0022300:65518-65537 | None:intergenic | 40.0% | |
| TTACCAAACAAGCACCAATC+AGG | - | tig0022300:65765-65784 | Msa1398900:CDS | 40.0% | |
| ! | ATACCTGATTGGTGCTTGTT+TGG | + | tig0022300:65771-65790 | None:intergenic | 40.0% |
| TAATGGTCACAATTCCGTCT+TGG | - | tig0022300:65902-65921 | Msa1398900:CDS | 40.0% | |
| GTCTTGGAAACTTTCATTCG+AGG | - | tig0022300:65918-65937 | Msa1398900:CDS | 40.0% | |
| CTTCCTGAAATAGGTAAGAG+AGG | - | tig0022300:66060-66079 | Msa1398900:intron | 40.0% | |
| AGAGAAAAGGTTAATGAGGC+TGG | - | tig0022300:66420-66439 | Msa1398900:intron | 40.0% | |
| ! | AAAACACAACTCTAAGGGTC+TGG | + | tig0022300:66457-66476 | None:intergenic | 40.0% |
| GACCGAGTAAAAATTGGATC+AGG | + | tig0022300:66495-66514 | None:intergenic | 40.0% | |
| !! | TGTGCACTTGATGGTGAATT+TGG | - | tig0022300:66621-66640 | Msa1398900:intron | 40.0% |
| AGATGGTAAAGAGCCACTAT+TGG | - | tig0022300:66704-66723 | Msa1398900:CDS | 40.0% | |
| ! | AGGGTAGAAGTCAACCTTTT+AGG | - | tig0022300:66865-66884 | Msa1398900:intron | 40.0% |
| ! | GGGTAGAAGTCAACCTTTTA+GGG | - | tig0022300:66866-66885 | Msa1398900:intron | 40.0% |
| ! | CGTGCTTGAATGATGATGTT+TGG | - | tig0022300:67026-67045 | Msa1398900:intron | 40.0% |
| CCTTAACAGTGTGAATTCCA+TGG | + | tig0022300:67102-67121 | None:intergenic | 40.0% | |
| CCATGGAATTCACACTGTTA+AGG | - | tig0022300:67099-67118 | Msa1398900:intron | 40.0% | |
| TATGTGGAGATGCAGATGTT+TGG | - | tig0022300:67564-67583 | Msa1398900:CDS | 40.0% | |
| ATCATCAACAACACACGACT+TGG | + | tig0022300:67631-67650 | None:intergenic | 40.0% | |
| TCTTCTTTCTCTGCAGCATT+TGG | - | tig0022300:67881-67900 | Msa1398900:CDS | 40.0% | |
| TTTGGTAGAAATCGTGAAGC+GGG | - | tig0022300:67899-67918 | Msa1398900:CDS | 40.0% | |
| ATACAATCTGCAGGACAGTT+CGG | - | tig0022300:67996-68015 | Msa1398900:CDS | 40.0% | |
| ATATGTTGCAGACCTTGAAC+TGG | + | tig0022300:68026-68045 | None:intergenic | 40.0% | |
| TCCAACATTAAGAGCAGGAT+TGG | + | tig0022300:68362-68381 | None:intergenic | 40.0% | |
| ATACATGGTTGAACATAGCC+TGG | + | tig0022300:68437-68456 | None:intergenic | 40.0% | |
| TTCCTCCTCTTGATACAACA+TGG | - | tig0022300:68621-68640 | Msa1398900:intron | 40.0% | |
| TCCTCCTCTTGATACAACAT+GGG | - | tig0022300:68622-68641 | Msa1398900:intron | 40.0% | |
| ! | ATCTTACACCACACTGCTTT+TGG | + | tig0022300:68731-68750 | None:intergenic | 40.0% |
| ! | AGCAGTGTGGTGTAAGATTT+TGG | - | tig0022300:68733-68752 | Msa1398900:CDS | 40.0% |
| TCAAATGGGGAATATCAGTG+AGG | - | tig0022300:68762-68781 | Msa1398900:exon | 40.0% | |
| CCTAGAAATCGACATCAACA+TGG | + | tig0022300:68837-68856 | None:intergenic | 40.0% | |
| !! | CCATGTTGATGTCGATTTCT+AGG | - | tig0022300:68834-68853 | Msa1398900:five_prime_UTR | 40.0% |
| ! | CAGTCAATGATGATGCTTCC+TGG | - | tig0022300:65465-65484 | Msa1398900:three_prime_UTR | 45.0% |
| ! | GGTTAGTTGACTAGCAATGC+AGG | + | tig0022300:65497-65516 | None:intergenic | 45.0% |
| !! | TGGTTATTTTGCAGTGGCCT+TGG | - | tig0022300:65855-65874 | Msa1398900:CDS | 45.0% |
| GGAAACTTTCATTCGAGGAG+TGG | - | tig0022300:65923-65942 | Msa1398900:CDS | 45.0% | |
| CCACCTCTCTTACCTATTTC+AGG | + | tig0022300:66066-66085 | None:intergenic | 45.0% | |
| CCTGAAATAGGTAAGAGAGG+TGG | - | tig0022300:66063-66082 | Msa1398900:intron | 45.0% | |
| GAAATAGGTAAGAGAGGTGG+TGG | - | tig0022300:66066-66085 | Msa1398900:intron | 45.0% | |
| TCCAAGAGCTCCAATCTTCA+AGG | - | tig0022300:66098-66117 | Msa1398900:intron | 45.0% | |
| ACCTTGAAGATTGGAGCTCT+TGG | + | tig0022300:66102-66121 | None:intergenic | 45.0% | |
| GTTAATGAGGCTGGCAAATC+TGG | - | tig0022300:66429-66448 | Msa1398900:CDS | 45.0% | |
| TTGAAGGGGTCGTTCATCAT+TGG | + | tig0022300:66529-66548 | None:intergenic | 45.0% | |
| GGTAAAGAGCCACTATTGGT+TGG | - | tig0022300:66708-66727 | Msa1398900:CDS | 45.0% | |
| GGAGTCAAAGCTGTGCAAAA+TGG | - | tig0022300:66828-66847 | Msa1398900:CDS | 45.0% | |
| CATCATCATTCAAGCACGGA+GGG | + | tig0022300:67024-67043 | None:intergenic | 45.0% | |
| ACATCATCATTCAAGCACGG+AGG | + | tig0022300:67025-67044 | None:intergenic | 45.0% | |
| TGTGAATTCCATGGGAAGAG+AGG | + | tig0022300:67093-67112 | None:intergenic | 45.0% | |
| TATACATGCAGCCAGGCTTA+TGG | + | tig0022300:67979-67998 | None:intergenic | 45.0% | |
| CAGATTGTATACATGCAGCC+AGG | + | tig0022300:67986-68005 | None:intergenic | 45.0% | |
| GCTGCATGTATACAATCTGC+AGG | - | tig0022300:67987-68006 | Msa1398900:CDS | 45.0% | |
| !! | AGAGCAGGATTGGCCAAAAT+AGG | + | tig0022300:68352-68371 | None:intergenic | 45.0% |
| GCCAATCCTGCTCTTAATGT+TGG | - | tig0022300:68358-68377 | Msa1398900:CDS | 45.0% | |
| GGTCAAAAAGAAATAGGGCC+AGG | - | tig0022300:68416-68435 | Msa1398900:intron | 45.0% | |
| !! | GCTCCCACATGATTGTTTTG+TGG | + | tig0022300:68518-68537 | None:intergenic | 45.0% |
| TCACGCTTTCCAGTTACACA+AGG | - | tig0022300:68569-68588 | Msa1398900:CDS | 45.0% | |
| GAATGACCACCTTGTGTAAC+TGG | + | tig0022300:68581-68600 | None:intergenic | 45.0% | |
| TCCCATGTTGTATCAAGAGG+AGG | + | tig0022300:68626-68645 | None:intergenic | 45.0% | |
| ATGGGGAATATCAGTGAGGA+AGG | - | tig0022300:68766-68785 | Msa1398900:exon | 45.0% | |
| AACGTGCCTATGCGAAAACT+AGG | - | tig0022300:68860-68879 | Msa1398900:five_prime_UTR | 45.0% | |
| TAGCAATGCAGGAAGAAGCC+AGG | + | tig0022300:65486-65505 | None:intergenic | 50.0% | |
| ! | AGCCACTATTGGTTGGAGAG+AGG | - | tig0022300:66715-66734 | Msa1398900:CDS | 50.0% |
| ! | GCCACTATTGGTTGGAGAGA+GGG | - | tig0022300:66716-66735 | Msa1398900:CDS | 50.0% |
| ACCCTCTCTCCAACCAATAG+TGG | + | tig0022300:66720-66739 | None:intergenic | 50.0% | |
| !! | CGGAGGGAAATGTTTCTGGT+AGG | + | tig0022300:67008-67027 | None:intergenic | 50.0% |
| AGCACGGAGGGAAATGTTTC+TGG | + | tig0022300:67012-67031 | None:intergenic | 50.0% | |
| CTGAACCAGTGCCAGACATA+GGG | - | tig0022300:68486-68505 | Msa1398900:intron | 50.0% | |
| TGAACCAGTGCCAGACATAG+GGG | - | tig0022300:68487-68506 | Msa1398900:intron | 50.0% | |
| TGTGGTATGTCCCCTATGTC+TGG | + | tig0022300:68500-68519 | None:intergenic | 50.0% | |
| CGCTTTCCAGTTACACAAGG+TGG | - | tig0022300:68572-68591 | Msa1398900:CDS | 50.0% | |
| ! | TAACGGGTACATCCAGCAGT+GGG | - | tig0022300:68702-68721 | Msa1398900:CDS | 50.0% |
| !!! | TGCTTTTGGTTTCCCACTGC+TGG | + | tig0022300:68717-68736 | None:intergenic | 50.0% |
| GTGGGAAACCAAAAGCAGTG+TGG | - | tig0022300:68720-68739 | Msa1398900:CDS | 50.0% | |
| TCAGTGAGGAAGGTTACAGC+TGG | - | tig0022300:68776-68795 | Msa1398900:exon | 50.0% | |
| CAGTTCGGAGCTCCAGTTCA+AGG | - | tig0022300:68011-68030 | Msa1398900:CDS | 55.0% | |
| !! | CCTATGTCTGGCACTGGTTC+AGG | + | tig0022300:68488-68507 | None:intergenic | 55.0% |
| CCTGAACCAGTGCCAGACAT+AGG | - | tig0022300:68485-68504 | Msa1398900:intron | 55.0% | |
| ATGTCCCCTATGTCTGGCAC+TGG | + | tig0022300:68494-68513 | None:intergenic | 55.0% | |
| !! | GTAACGGGTACATCCAGCAG+TGG | - | tig0022300:68701-68720 | Msa1398900:CDS | 55.0% |
| TGAGGAAGGTTACAGCTGGC+AGG | - | tig0022300:68780-68799 | Msa1398900:five_prime_UTR | 55.0% | |
| !! | CATGGGAAGAGAGGCGCTTG+TGG | + | tig0022300:67084-67103 | None:intergenic | 60.0% |
| CACAAGCGCCTCTCTTCCCA+TGG | - | tig0022300:67082-67101 | Msa1398900:intron | 60.0% | |
| GGAAGGTTACAGCTGGCAGG+AGG | - | tig0022300:68783-68802 | Msa1398900:five_prime_UTR | 60.0% | |
| ATGCTGGGCGTGAGAGCCTC+TGG | + | tig0022300:67756-67775 | None:intergenic | 65.0% | |
| GGCTCTCACGCCCAGCATGA+AGG | - | tig0022300:67758-67777 | Msa1398900:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022300 | gene | 65363 | 69098 | 65363 | ID=Msa1398900;Name=Msa1398900 |
| tig0022300 | mRNA | 65363 | 69098 | 65363 | ID=Msa1398900-mRNA-1;Parent=Msa1398900;Name=Msa1398900-mRNA-1;_AED=0.28;_eAED=0.28;_QI=320|1|1|1|1|1|8|284|536 |
| tig0022300 | exon | 65363 | 66044 | 65363 | ID=Msa1398900-mRNA-1:exon:16890;Parent=Msa1398900-mRNA-1 |
| tig0022300 | exon | 66429 | 66564 | 66429 | ID=Msa1398900-mRNA-1:exon:16889;Parent=Msa1398900-mRNA-1 |
| tig0022300 | exon | 66682 | 66882 | 66682 | ID=Msa1398900-mRNA-1:exon:16888;Parent=Msa1398900-mRNA-1 |
| tig0022300 | exon | 67296 | 67456 | 67296 | ID=Msa1398900-mRNA-1:exon:16887;Parent=Msa1398900-mRNA-1 |
| tig0022300 | exon | 67552 | 68039 | 67552 | ID=Msa1398900-mRNA-1:exon:16886;Parent=Msa1398900-mRNA-1 |
| tig0022300 | exon | 68342 | 68388 | 68342 | ID=Msa1398900-mRNA-1:exon:16885;Parent=Msa1398900-mRNA-1 |
| tig0022300 | exon | 68517 | 68592 | 68517 | ID=Msa1398900-mRNA-1:exon:16884;Parent=Msa1398900-mRNA-1 |
| tig0022300 | exon | 68675 | 69098 | 68675 | ID=Msa1398900-mRNA-1:exon:16883;Parent=Msa1398900-mRNA-1 |
| tig0022300 | five_prime_UTR | 68779 | 69098 | 68779 | ID=Msa1398900-mRNA-1:five_prime_utr;Parent=Msa1398900-mRNA-1 |
| tig0022300 | CDS | 68675 | 68778 | 68675 | ID=Msa1398900-mRNA-1:cds;Parent=Msa1398900-mRNA-1 |
| tig0022300 | CDS | 68517 | 68592 | 68517 | ID=Msa1398900-mRNA-1:cds;Parent=Msa1398900-mRNA-1 |
| tig0022300 | CDS | 68342 | 68388 | 68342 | ID=Msa1398900-mRNA-1:cds;Parent=Msa1398900-mRNA-1 |
| tig0022300 | CDS | 67552 | 68039 | 67552 | ID=Msa1398900-mRNA-1:cds;Parent=Msa1398900-mRNA-1 |
| tig0022300 | CDS | 67296 | 67456 | 67296 | ID=Msa1398900-mRNA-1:cds;Parent=Msa1398900-mRNA-1 |
| tig0022300 | CDS | 66682 | 66882 | 66682 | ID=Msa1398900-mRNA-1:cds;Parent=Msa1398900-mRNA-1 |
| tig0022300 | CDS | 66429 | 66564 | 66429 | ID=Msa1398900-mRNA-1:cds;Parent=Msa1398900-mRNA-1 |
| tig0022300 | CDS | 65647 | 66044 | 65647 | ID=Msa1398900-mRNA-1:cds;Parent=Msa1398900-mRNA-1 |
| tig0022300 | three_prime_UTR | 65363 | 65646 | 65363 | ID=Msa1398900-mRNA-1:three_prime_utr;Parent=Msa1398900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
