AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1026050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1026050 MtrunA17_Chr7g0244341 91.593 226 19 0 1 226 1 226 2.05e-157 435
Msa1026050 MtrunA17_Chr7g0244331 81.517 211 39 0 1 211 1 211 2.67e-129 363
Msa1026050 MtrunA17_Chr7g0244371 81.221 213 38 2 1 213 1 211 1.45e-127 358
Msa1026050 MtrunA17_Chr7g0244321 82.075 212 36 2 1 211 1 211 3.89e-127 358
Msa1026050 MtrunA17_Chr7g0244361 70.852 223 50 3 1 213 25 242 6.45e-109 313
Msa1026050 MtrunA17_Chr4g0013291 57.672 189 74 3 23 210 15 198 1.07e-74 224
Msa1026050 MtrunA17_Chr7g0244111 80.165 121 24 0 90 210 2 122 3.48e-72 215
Msa1026050 MtrunA17_Chr1g0150081 52.880 191 79 6 19 204 1 185 2.11e-59 185
Msa1026050 MtrunA17_Chr5g0432221 33.889 180 105 5 33 203 37 211 9.38e-25 97.4
Msa1026050 MtrunA17_Chr2g0333101 30.682 176 114 5 38 209 33 204 4.65e-21 87.8
Msa1026050 MtrunA17_Chr1g0150101 56.098 82 32 2 123 204 2 79 1.89e-20 82.0
Msa1026050 MtrunA17_Chr4g0003271 27.419 186 129 5 27 209 11 193 3.82e-20 85.1
Msa1026050 MtrunA17_Chr1g0150091 41.732 127 53 4 94 204 10 131 1.82e-19 81.3
Msa1026050 MtrunA17_Chr2g0300771 28.351 194 124 6 28 209 12 202 1.65e-16 75.1
Msa1026050 MtrunA17_Chr2g0333111 25.989 177 123 5 38 210 34 206 2.52e-15 72.4
Msa1026050 MtrunA17_Chr8g0387561 28.042 189 116 7 36 206 45 231 7.67e-14 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1026050 AT5G01750.2 55.760 217 92 2 1 213 1 217 4.45e-94 275
Msa1026050 AT3G11740.1 60.317 189 74 1 23 210 3 191 6.99e-85 250
Msa1026050 AT2G14560.1 50.244 205 100 1 20 224 4 206 1.29e-73 222
Msa1026050 AT1G33840.1 50.711 211 100 2 1 207 1 211 6.38e-73 221
Msa1026050 AT2G14560.3 50.244 205 100 1 20 224 64 266 2.03e-72 221
Msa1026050 AT5G01750.1 52.907 172 77 2 1 168 1 172 8.22e-68 206
Msa1026050 AT2G14560.2 50.667 150 74 0 20 169 4 153 2.95e-56 177
Msa1026050 AT2G14560.4 50.667 150 74 0 20 169 64 213 4.92e-55 176
Msa1026050 AT1G33840.2 46.821 173 88 2 1 169 1 173 7.24e-54 171
Msa1026050 AT3G16900.1 41.146 192 90 5 17 207 11 180 3.33e-47 154
Msa1026050 AT3G56180.2 35.829 187 115 2 22 205 17 201 1.50e-36 127
Msa1026050 AT3G56180.1 35.294 187 114 3 22 205 17 199 2.99e-34 122
Msa1026050 AT3G10986.1 31.579 190 124 3 22 205 3 192 2.25e-28 106
Msa1026050 AT3G15810.1 27.684 177 122 3 36 210 33 205 1.88e-22 91.7
Msa1026050 AT2G30270.1 27.933 179 117 4 26 203 12 179 7.89e-18 78.6
Msa1026050 AT1G80120.1 30.556 180 116 4 36 210 19 194 9.69e-18 79.0
Msa1026050 AT2G05910.1 25.654 191 123 6 28 210 9 188 3.21e-14 68.9
Msa1026050 AT2G38640.1 28.736 174 115 5 36 206 25 192 4.76e-14 68.6
Msa1026050 AT5G20640.1 25.248 202 134 4 23 209 12 211 4.42e-13 66.2

Find 54 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATATTGTCTTCAAAGTTAA+AGG 0.162900 7_1:+57530638 Msa1026050:CDS
TTTGGTCTTCAATTGCATTA+TGG 0.249654 7_1:-57532528 None:intergenic
GAAGTCACAAACATCTTCTT+TGG 0.264338 7_1:-57532576 None:intergenic
AGCAAGAAACACGTCTAATT+TGG 0.276680 7_1:-57532546 None:intergenic
GTGCTTCCGACCACCATATT+TGG 0.296063 7_1:+57530518 Msa1026050:CDS
TGCTCCATATCCATTGGATT+TGG 0.348058 7_1:+57530553 Msa1026050:CDS
ACAATATTGAGGGCCAAATA+TGG 0.348290 7_1:-57530531 None:intergenic
ACAGCCAAATCCAATGGATA+TGG 0.371690 7_1:-57530557 None:intergenic
GAAGAAAAGGGAAGTGAATC+AGG 0.376536 7_1:+57533157 Msa1026050:CDS
GATTGGTAAAGACCATTTCA+TGG 0.376637 7_1:+57533063 Msa1026050:CDS
GGATTTGGCTGTGGTCAAAA+AGG 0.380756 7_1:+57530568 Msa1026050:CDS
TGAGATTAACAGTGAAGAAA+AGG 0.382281 7_1:+57533144 Msa1026050:CDS
AACAATGTTGTTTGATTCAC+CGG 0.422881 7_1:-57532642 None:intergenic
CTTTCATGACCGCCGTGTCT+TGG 0.423679 7_1:+57530673 Msa1026050:CDS
GAGATTAACAGTGAAGAAAA+GGG 0.427156 7_1:+57533145 Msa1026050:CDS
GTTTGATTCACCGGCATAAA+CGG 0.431148 7_1:-57532633 None:intergenic
TGATCGGTGGGAAGCTTACA+TGG 0.444675 7_1:+57532457 Msa1026050:CDS
ATTGGTGCAGATAATGACTA+TGG 0.448849 7_1:+57532433 Msa1026050:intron
TTGCGACGTAGGGTGGTGAT+AGG 0.450531 7_1:-57530713 None:intergenic
ACTTCAAAGTCAAAGGTAGT+TGG 0.472279 7_1:+57532594 Msa1026050:CDS
ATATCCATTGGATTTGGCTG+TGG 0.476662 7_1:+57530559 Msa1026050:CDS
ATGAAAGCGTAATCAACATT+GGG 0.498374 7_1:-57533097 None:intergenic
ATATTGTGCTCCATATCCAT+TGG 0.499976 7_1:+57530547 Msa1026050:CDS
TGCCTCTGCACCACCGATGT+CGG 0.506015 7_1:+57530496 Msa1026050:CDS
GCAGATGGTTGTGGTTGATA+AGG 0.518139 7_1:-57530476 None:intergenic
TATGAAAGCGTAATCAACAT+TGG 0.519673 7_1:-57533098 None:intergenic
CGATCTTGCACCGTTTATGC+CGG 0.523467 7_1:+57532623 Msa1026050:CDS
ATCAAACAACATTGTTGCAC+AGG 0.532488 7_1:+57532649 Msa1026050:CDS
TGTTGATTACGCTTTCATAG+TGG 0.534696 7_1:+57533102 Msa1026050:CDS
GATAAACTGTGACCATGAAA+TGG 0.538015 7_1:-57533075 None:intergenic
GGATATGGAGCACAATATTG+AGG 0.540481 7_1:-57530542 None:intergenic
GTTTGTGACTTCAAAGTCAA+AGG 0.540662 7_1:+57532587 Msa1026050:CDS
CACCGACATCGGTGGTGCAG+AGG 0.548461 7_1:-57530498 None:intergenic
GGTGCAGAGGCAGATGGTTG+TGG 0.549880 7_1:-57530485 None:intergenic
GATATGGAGCACAATATTGA+GGG 0.554691 7_1:-57530541 None:intergenic
CAAGACACGGCGGTCATGAA+AGG 0.557437 7_1:-57530672 None:intergenic
TTGACCACAGCCAAATCCAA+TGG 0.558143 7_1:-57530563 None:intergenic
TGAACGTACCTTGCGACGTA+GGG 0.559954 7_1:-57530723 None:intergenic
AATGACTATGGATGATCGGT+GGG 0.567383 7_1:+57532445 Msa1026050:CDS
TAATGACTATGGATGATCGG+TGG 0.599736 7_1:+57532444 Msa1026050:CDS
TTGAACGTACCTTGCGACGT+AGG 0.606411 7_1:-57530724 None:intergenic
TGCGACGTAGGGTGGTGATA+GGG 0.606682 7_1:-57530712 None:intergenic
ATCGGTGGTGCAGAGGCAGA+TGG 0.609454 7_1:-57530491 None:intergenic
GTCGGAAGCACCGACATCGG+TGG 0.614411 7_1:-57530506 None:intergenic
TGAGGGCCAAATATGGTGGT+CGG 0.625346 7_1:-57530524 None:intergenic
TATCACCACCCTACGTCGCA+AGG 0.636481 7_1:+57530715 Msa1026050:CDS
AGATAATGACTATGGATGAT+CGG 0.650977 7_1:+57532441 Msa1026050:intron
AAGGTGATAGCAATTTCAGA+CGG 0.662704 7_1:+57530587 Msa1026050:CDS
ATATTGAGGGCCAAATATGG+TGG 0.664652 7_1:-57530528 None:intergenic
GTGGTCGGAAGCACCGACAT+CGG 0.667721 7_1:-57530509 None:intergenic
CTGCGGCATCAACCAAGACA+CGG 0.671998 7_1:-57530685 None:intergenic
GATCGGTGGGAAGCTTACAT+GGG 0.678160 7_1:+57532458 Msa1026050:CDS
GGTGGTGATAGGGTTATCTG+CGG 0.701861 7_1:-57530702 None:intergenic
CGGCATCAACCAAGACACGG+CGG 0.795295 7_1:-57530682 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTCTTTTGTTTTTTTTA+GGG - chr7_1:57531129-57531148 None:intergenic 10.0%
!!! ATAATTCTTTTGTTTTTTTT+AGG - chr7_1:57531130-57531149 None:intergenic 10.0%
!!! TTGTAAATTTTAAAAATACA+GGG - chr7_1:57531759-57531778 None:intergenic 10.0%
!!! TTTGTAAATTTTAAAAATAC+AGG - chr7_1:57531760-57531779 None:intergenic 10.0%
!!! TGTATTTTTAAAATTTACAA+AGG + chr7_1:57531759-57531778 Msa1026050:intron 10.0%
!!! GAATTTCTTTTAAAAATTTA+TGG - chr7_1:57531791-57531810 None:intergenic 10.0%
!! ATTCTTATAATTTCAAAATA+GGG - chr7_1:57531881-57531900 None:intergenic 10.0%
!!! AAAAATATTTTTAGTTTGTT+TGG - chr7_1:57532043-57532062 None:intergenic 10.0%
!!! TTGACTATTACTTTTTTTTT+TGG - chr7_1:57530864-57530883 None:intergenic 15.0%
!!! TTGAATGTTAGTATAAATTT+TGG + chr7_1:57531725-57531744 Msa1026050:intron 15.0%
!!! TTTTAAAAGAAATTCCAAAT+TGG + chr7_1:57531796-57531815 Msa1026050:intron 15.0%
!!! AAACCTAGATTATAAAATTT+TGG + chr7_1:57531847-57531866 Msa1026050:intron 15.0%
!!! TTTCCAAAATTTTATAATCT+AGG - chr7_1:57531853-57531872 None:intergenic 15.0%
!! CATTCTTATAATTTCAAAAT+AGG - chr7_1:57531882-57531901 None:intergenic 15.0%
!!! AATTAACAAATCAACTTTTA+TGG + chr7_1:57532991-57533010 Msa1026050:intron 15.0%
!! AATATTGTCTTCAAAGTTAA+AGG + chr7_1:57530638-57530657 Msa1026050:CDS 20.0%
!!! TTACTTTTTTTTTTGGAGAA+AGG - chr7_1:57530857-57530876 None:intergenic 20.0%
!!! TTTTGATTATTCTGATAGAA+AGG + chr7_1:57531052-57531071 Msa1026050:intron 20.0%
!! TTGCATATCAATTAAAACTA+AGG - chr7_1:57531294-57531313 None:intergenic 20.0%
!!! TTTTTTTTTCTTTCTAATCG+TGG - chr7_1:57531673-57531692 None:intergenic 20.0%
!!! TTAGTATAAATTTTGGAGAT+GGG + chr7_1:57531732-57531751 Msa1026050:intron 20.0%
!! AAAATATATAAGGACCAATT+TGG - chr7_1:57531813-57531832 None:intergenic 20.0%
!! CAAATGAAAAAGATTTGAAA+AGG + chr7_1:57531954-57531973 Msa1026050:intron 20.0%
!!! ATTTTTAGTTTGTTTGGATA+GGG - chr7_1:57532037-57532056 None:intergenic 20.0%
!!! TATTTTTAGTTTGTTTGGAT+AGG - chr7_1:57532038-57532057 None:intergenic 20.0%
!! TTTGTCAAATAAATGTCATA+TGG - chr7_1:57532272-57532291 None:intergenic 20.0%
!!! TTTTCCATTGTTTGAATTAT+GGG + chr7_1:57532351-57532370 Msa1026050:intron 20.0%
!!! ACAAAGAAGAAATTTTATCT+TGG + chr7_1:57532784-57532803 Msa1026050:intron 20.0%
!!! CAAAGAAGAAATTTTATCTT+GGG + chr7_1:57532785-57532804 Msa1026050:intron 20.0%
!!! GAAACCTTTTTTTTTTTTTG+AGG + chr7_1:57532828-57532847 Msa1026050:intron 20.0%
!! GTTTCCTCAAAAAAAAAAAA+AGG - chr7_1:57532835-57532854 None:intergenic 20.0%
!!! ACTTGTTAATGATTCAAAAA+AGG - chr7_1:57532912-57532931 None:intergenic 20.0%
!! TCCAGTGATAATTAAATTAA+GGG - chr7_1:57532960-57532979 None:intergenic 20.0%
! CAAATACAGTTATAAAAGTG+AGG + chr7_1:57531358-57531377 Msa1026050:intron 25.0%
! TATGATTGGACAAAAACAAT+GGG - chr7_1:57531568-57531587 None:intergenic 25.0%
! TTATGATTGGACAAAAACAA+TGG - chr7_1:57531569-57531588 None:intergenic 25.0%
! CAACTAATATTAGACAACTT+TGG - chr7_1:57531612-57531631 None:intergenic 25.0%
!! TTTTCGGACATTAAATATTG+AGG - chr7_1:57531648-57531667 None:intergenic 25.0%
!!! GTTAGTATAAATTTTGGAGA+TGG + chr7_1:57531731-57531750 Msa1026050:intron 25.0%
! GAAAAAGATTTGAAAAGGAA+AGG + chr7_1:57531959-57531978 Msa1026050:intron 25.0%
!!! TTTTTTTTATGTTAACCGTC+CGG + chr7_1:57532059-57532078 Msa1026050:intron 25.0%
! TTCACCTAAGAATAAAACTA+TGG + chr7_1:57532151-57532170 Msa1026050:intron 25.0%
! TCACCTAAGAATAAAACTAT+GGG + chr7_1:57532152-57532171 Msa1026050:intron 25.0%
! CATAATTCAAACAATGGAAA+AGG - chr7_1:57532352-57532371 None:intergenic 25.0%
!! CTTTTCCATTGTTTGAATTA+TGG + chr7_1:57532350-57532369 Msa1026050:intron 25.0%
! ATCCAATAAAGTTGTACTAT+TGG + chr7_1:57532415-57532434 Msa1026050:intron 25.0%
! AAAACTAAATATTCGCTTGT+TGG - chr7_1:57532702-57532721 None:intergenic 25.0%
!!! CTTCTTAAAAAGTGTCTTAA+GGG - chr7_1:57532763-57532782 None:intergenic 25.0%
!!! ACTTCTTAAAAAGTGTCTTA+AGG - chr7_1:57532764-57532783 None:intergenic 25.0%
! ACCCTTAATTTAATTATCAC+TGG + chr7_1:57532956-57532975 Msa1026050:intron 25.0%
! GTCCAGTGATAATTAAATTA+AGG - chr7_1:57532961-57532980 None:intergenic 25.0%
!!! TTACTTGATGAAGTTTTGTT+CGG + chr7_1:57533181-57533200 Msa1026050:CDS 25.0%
ATGATTGGACAAAAACAATG+GGG - chr7_1:57531567-57531586 None:intergenic 30.0%
!! TGTTTTTGTCCAATCATAAG+AGG + chr7_1:57531570-57531589 Msa1026050:intron 30.0%
CAATCATAAGAGGAGAAAAA+CGG + chr7_1:57531580-57531599 Msa1026050:intron 30.0%
!!! AGACCCATAGTTTTATTCTT+AGG - chr7_1:57532158-57532177 None:intergenic 30.0%
AATTCAAACAATGGAAAAGG+AGG - chr7_1:57532349-57532368 None:intergenic 30.0%
AAAGCCCATAATTCAAACAA+TGG - chr7_1:57532358-57532377 None:intergenic 30.0%
CACCAATAGTACAACTTTAT+TGG - chr7_1:57532420-57532439 None:intergenic 30.0%
AGATAATGACTATGGATGAT+CGG + chr7_1:57532441-57532460 Msa1026050:intron 30.0%
! TTTGGTCTTCAATTGCATTA+TGG - chr7_1:57532531-57532550 None:intergenic 30.0%
! AACAATGTTGTTTGATTCAC+CGG - chr7_1:57532645-57532664 None:intergenic 30.0%
! TATTCGCTTGTTGGTTATAT+AGG - chr7_1:57532693-57532712 None:intergenic 30.0%
! ATGAAAGCGTAATCAACATT+GGG - chr7_1:57533100-57533119 None:intergenic 30.0%
! TATGAAAGCGTAATCAACAT+TGG - chr7_1:57533101-57533120 None:intergenic 30.0%
TGAGATTAACAGTGAAGAAA+AGG + chr7_1:57533144-57533163 Msa1026050:CDS 30.0%
GAGATTAACAGTGAAGAAAA+GGG + chr7_1:57533145-57533164 Msa1026050:CDS 30.0%
!!! TACTTGATGAAGTTTTGTTC+GGG + chr7_1:57533182-57533201 Msa1026050:CDS 30.0%
ACAATATTGAGGGCCAAATA+TGG - chr7_1:57530534-57530553 None:intergenic 35.0%
GATATGGAGCACAATATTGA+GGG - chr7_1:57530544-57530563 None:intergenic 35.0%
ATATTGTGCTCCATATCCAT+TGG + chr7_1:57530547-57530566 Msa1026050:CDS 35.0%
AAGGTGATAGCAATTTCAGA+CGG + chr7_1:57530587-57530606 Msa1026050:CDS 35.0%
TACAGTTATAAAAGTGAGGC+TGG + chr7_1:57531362-57531381 Msa1026050:intron 35.0%
ACAGTTATAAAAGTGAGGCT+GGG + chr7_1:57531363-57531382 Msa1026050:intron 35.0%
ACCTTGATATGTCATAGTGT+CGG - chr7_1:57531420-57531439 None:intergenic 35.0%
AAATATTACCCCCTCTTAGT+CGG - chr7_1:57531444-57531463 None:intergenic 35.0%
! CGTTTTTCTCCTCTTATGAT+TGG - chr7_1:57531582-57531601 None:intergenic 35.0%
! CTTTCTAATCGTGGCATTTT+CGG - chr7_1:57531664-57531683 None:intergenic 35.0%
GTTTGTTTGGATAGGGTAAT+GGG - chr7_1:57532030-57532049 None:intergenic 35.0%
! AGTTTGTTTGGATAGGGTAA+TGG - chr7_1:57532031-57532050 None:intergenic 35.0%
ATTGGTGCAGATAATGACTA+TGG + chr7_1:57532433-57532452 Msa1026050:intron 35.0%
AGCAAGAAACACGTCTAATT+TGG - chr7_1:57532549-57532568 None:intergenic 35.0%
GAAGTCACAAACATCTTCTT+TGG - chr7_1:57532579-57532598 None:intergenic 35.0%
GTTTGTGACTTCAAAGTCAA+AGG + chr7_1:57532587-57532606 Msa1026050:CDS 35.0%
ACTTCAAAGTCAAAGGTAGT+TGG + chr7_1:57532594-57532613 Msa1026050:CDS 35.0%
ATCAAACAACATTGTTGCAC+AGG + chr7_1:57532649-57532668 Msa1026050:CDS 35.0%
! ACTGTTCAGAGTCTTTTGAT+TGG + chr7_1:57533046-57533065 Msa1026050:CDS 35.0%
GATTGGTAAAGACCATTTCA+TGG + chr7_1:57533063-57533082 Msa1026050:CDS 35.0%
GATAAACTGTGACCATGAAA+TGG - chr7_1:57533078-57533097 None:intergenic 35.0%
! TGTTGATTACGCTTTCATAG+TGG + chr7_1:57533102-57533121 Msa1026050:CDS 35.0%
!!! ACTTGATGAAGTTTTGTTCG+GGG + chr7_1:57533183-57533202 Msa1026050:CDS 35.0%
ATATTGAGGGCCAAATATGG+TGG - chr7_1:57530531-57530550 None:intergenic 40.0%
GGATATGGAGCACAATATTG+AGG - chr7_1:57530545-57530564 None:intergenic 40.0%
TGCTCCATATCCATTGGATT+TGG + chr7_1:57530553-57530572 Msa1026050:CDS 40.0%
ACAGCCAAATCCAATGGATA+TGG - chr7_1:57530560-57530579 None:intergenic 40.0%
ATATCCATTGGATTTGGCTG+TGG + chr7_1:57530559-57530578 Msa1026050:CDS 40.0%
CCTTGATATGTCATAGTGTC+GGG - chr7_1:57531419-57531438 None:intergenic 40.0%
ATATCAAGGTTCCGACTAAG+AGG + chr7_1:57531430-57531449 Msa1026050:intron 40.0%
TATCAAGGTTCCGACTAAGA+GGG + chr7_1:57531431-57531450 Msa1026050:intron 40.0%
ACATGTGAGTATGAGAGAGA+TGG - chr7_1:57531515-57531534 None:intergenic 40.0%
CCATTCTCTTAAAAACCGGA+CGG - chr7_1:57532077-57532096 None:intergenic 40.0%
!! CGTCCGGTTTTTAAGAGAAT+GGG + chr7_1:57532075-57532094 Msa1026050:intron 40.0%
!! GTCCGGTTTTTAAGAGAATG+GGG + chr7_1:57532076-57532095 Msa1026050:intron 40.0%
AGCCCCATTCTCTTAAAAAC+CGG - chr7_1:57532081-57532100 None:intergenic 40.0%
TACCTAATGACGAATCGTTC+AGG - chr7_1:57532181-57532200 None:intergenic 40.0%
TAATGACTATGGATGATCGG+TGG + chr7_1:57532444-57532463 Msa1026050:CDS 40.0%
AATGACTATGGATGATCGGT+GGG + chr7_1:57532445-57532464 Msa1026050:CDS 40.0%
GTTTGATTCACCGGCATAAA+CGG - chr7_1:57532636-57532655 None:intergenic 40.0%
TCATGCTAACAAGTGCTCTT+AGG - chr7_1:57532937-57532956 None:intergenic 40.0%
GAAGAAAAGGGAAGTGAATC+AGG + chr7_1:57533157-57533176 Msa1026050:CDS 40.0%
!!! CTTGATGAAGTTTTGTTCGG+GGG + chr7_1:57533184-57533203 Msa1026050:CDS 40.0%
! GCAGATGGTTGTGGTTGATA+AGG - chr7_1:57530479-57530498 None:intergenic 45.0%
TTGACCACAGCCAAATCCAA+TGG - chr7_1:57530566-57530585 None:intergenic 45.0%
GGATTTGGCTGTGGTCAAAA+AGG + chr7_1:57530568-57530587 Msa1026050:CDS 45.0%
TATAAAAGTGAGGCTGGGTG+AGG + chr7_1:57531368-57531387 Msa1026050:intron 45.0%
TGAGGATTGAGTGTAGCAGA+AGG + chr7_1:57531386-57531405 Msa1026050:intron 45.0%
CCCGACACTATGACATATCA+AGG + chr7_1:57531416-57531435 Msa1026050:intron 45.0%
ATCAAGGTTCCGACTAAGAG+GGG + chr7_1:57531432-57531451 Msa1026050:intron 45.0%
GGGAGAGAAAGAAGAAGAGA+GGG - chr7_1:57531547-57531566 None:intergenic 45.0%
!! CCGTCCGGTTTTTAAGAGAA+TGG + chr7_1:57532074-57532093 Msa1026050:intron 45.0%
AGAATGGGGCTCTCATAGTT+TGG + chr7_1:57532090-57532109 Msa1026050:intron 45.0%
CTCCTGAACGATTCGTCATT+AGG + chr7_1:57532176-57532195 Msa1026050:intron 45.0%
!!! AATTTCTTTTAAAAATTTAT+GGG - chr7_1:57531790-57531809 None:intergenic 5.0%
!!! ATTTTGAAAAAAAATATATA+AGG - chr7_1:57531823-57531842 None:intergenic 5.0%
GTGCTTCCGACCACCATATT+TGG + chr7_1:57530518-57530537 Msa1026050:CDS 50.0%
TGAGGGCCAAATATGGTGGT+CGG - chr7_1:57530527-57530546 None:intergenic 50.0%
GGTGGTGATAGGGTTATCTG+CGG - chr7_1:57530705-57530724 None:intergenic 50.0%
TGAACGTACCTTGCGACGTA+GGG - chr7_1:57530726-57530745 None:intergenic 50.0%
TTGAACGTACCTTGCGACGT+AGG - chr7_1:57530727-57530746 None:intergenic 50.0%
TCAAGGTTCCGACTAAGAGG+GGG + chr7_1:57531433-57531452 Msa1026050:intron 50.0%
GGGGAGAGAAAGAAGAAGAG+AGG - chr7_1:57531548-57531567 None:intergenic 50.0%
TGATCGGTGGGAAGCTTACA+TGG + chr7_1:57532457-57532476 Msa1026050:CDS 50.0%
GATCGGTGGGAAGCTTACAT+GGG + chr7_1:57532458-57532477 Msa1026050:CDS 50.0%
CGATCTTGCACCGTTTATGC+CGG + chr7_1:57532623-57532642 Msa1026050:CDS 50.0%
CAAGACACGGCGGTCATGAA+AGG - chr7_1:57530675-57530694 None:intergenic 55.0%
CTTTCATGACCGCCGTGTCT+TGG + chr7_1:57530673-57530692 Msa1026050:CDS 55.0%
CTGCGGCATCAACCAAGACA+CGG - chr7_1:57530688-57530707 None:intergenic 55.0%
TGCGACGTAGGGTGGTGATA+GGG - chr7_1:57530715-57530734 None:intergenic 55.0%
TTGCGACGTAGGGTGGTGAT+AGG - chr7_1:57530716-57530735 None:intergenic 55.0%
TATCACCACCCTACGTCGCA+AGG + chr7_1:57530715-57530734 Msa1026050:CDS 55.0%
GGTGCAGAGGCAGATGGTTG+TGG - chr7_1:57530488-57530507 None:intergenic 60.0%
ATCGGTGGTGCAGAGGCAGA+TGG - chr7_1:57530494-57530513 None:intergenic 60.0%
TGCCTCTGCACCACCGATGT+CGG + chr7_1:57530496-57530515 Msa1026050:CDS 60.0%
!! GTGGTCGGAAGCACCGACAT+CGG - chr7_1:57530512-57530531 None:intergenic 60.0%
CGGCATCAACCAAGACACGG+CGG - chr7_1:57530685-57530704 None:intergenic 60.0%
ACGTACCTTGCGACGTAGGG+TGG - chr7_1:57530723-57530742 None:intergenic 60.0%
CACCGACATCGGTGGTGCAG+AGG - chr7_1:57530501-57530520 None:intergenic 65.0%
!! GTCGGAAGCACCGACATCGG+TGG - chr7_1:57530509-57530528 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 57530467 57533213 57530467 ID=Msa1026050;Name=Msa1026050
chr7_1 mRNA 57530467 57533213 57530467 ID=Msa1026050-mRNA-1;Parent=Msa1026050;Name=Msa1026050-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|1|1|3|0|226
chr7_1 exon 57530467 57530736 57530467 ID=Msa1026050-mRNA-1:exon:11468;Parent=Msa1026050-mRNA-1
chr7_1 exon 57532443 57532670 57532443 ID=Msa1026050-mRNA-1:exon:11469;Parent=Msa1026050-mRNA-1
chr7_1 exon 57533031 57533213 57533031 ID=Msa1026050-mRNA-1:exon:11470;Parent=Msa1026050-mRNA-1
chr7_1 CDS 57530467 57530736 57530467 ID=Msa1026050-mRNA-1:cds;Parent=Msa1026050-mRNA-1
chr7_1 CDS 57532443 57532670 57532443 ID=Msa1026050-mRNA-1:cds;Parent=Msa1026050-mRNA-1
chr7_1 CDS 57533031 57533213 57533031 ID=Msa1026050-mRNA-1:cds;Parent=Msa1026050-mRNA-1
Gene Sequence

>Msa1026050

ATGGCTCATCCTTATCAACCACAACCATCTGCCTCTGCACCACCGATGTCGGTGCTTCCGACCACCATATTTGGCCCTCAATATTGTGCTCCATATCCATTGGATTTGGCTGTGGTCAAAAAGGTGATAGCAATTTCAGACGGAAACTTCGTCGTCACTGATGTCAACAACAATATTGTCTTCAAAGTTAAAGGTTCTCTTTTAACCTTTCATGACCGCCGTGTCTTGGTTGATGCCGCAGATAACCCTATCACCACCCTACGTCGCAAGATAATGACTATGGATGATCGGTGGGAAGCTTACATGGGTGAAAGCACAAATGCTAAAGATCTAGTATTTACATTGAAACGATCGTCCATAATGCAATTGAAGACCAAATTAGACGTGTTTCTTGCTAATAACACCAAAGAAGATGTTTGTGACTTCAAAGTCAAAGGTAGTTGGTTCGAACGATCTTGCACCGTTTATGCCGGTGAATCAAACAACATTGTTGCACAGATGCACAAAAAGCACACTGTTCAGAGTCTTTTGATTGGTAAAGACCATTTCATGGTCACAGTTTATCCCAATGTTGATTACGCTTTCATAGTGGCATTAATCGTGATTCTTAATGAGATTAACAGTGAAGAAAAGGGAAGTGAATCAGGCTTACTTGATGAAGTTTTGTTCGGGGGTGTTTAA

Protein sequence

>Msa1026050

MAHPYQPQPSASAPPMSVLPTTIFGPQYCAPYPLDLAVVKKVIAISDGNFVVTDVNNNIVFKVKGSLLTFHDRRVLVDAADNPITTLRRKIMTMDDRWEAYMGESTNAKDLVFTLKRSSIMQLKTKLDVFLANNTKEDVCDFKVKGSWFERSCTVYAGESNNIVAQMHKKHTVQSLLIGKDHFMVTVYPNVDYAFIVALIVILNEINSEEKGSESGLLDEVLFGGV*