Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009840 | XP_013466362.1 | 90.437 | 366 | 23 | 1 | 12 | 365 | 5 | 370 | 0.0 | 646 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009840 | sp|Q94BN2|SPSY_ARATH | 73.563 | 348 | 74 | 2 | 24 | 355 | 11 | 356 | 6.08e-177 | 498 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009840 | Msa0139230 | 0.814958 | 1.181471e-51 | -8.615850e-47 |
| Msa0009840 | Msa0390160 | 0.800154 | 1.646195e-48 | -8.615850e-47 |
| Msa0009840 | Msa0535570 | 0.804351 | 2.252227e-49 | -8.615850e-47 |
| Msa0009840 | Msa0591490 | 0.805634 | 1.214029e-49 | -8.615850e-47 |
| Msa0009840 | Msa0643840 | 0.805783 | 1.129996e-49 | -8.615850e-47 |
| Msa0009840 | Msa0670360 | 0.803044 | 4.206838e-49 | -8.615850e-47 |
| Msa0009840 | Msa0768670 | 0.803932 | 2.752665e-49 | -8.615850e-47 |
| Msa0009840 | Msa0809920 | 0.801709 | 7.921157e-49 | -8.615850e-47 |
| Msa0009840 | Msa1088970 | 0.810834 | 9.463592e-51 | -8.615850e-47 |
| Msa0009840 | Msa1407040 | 0.800627 | 1.319079e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009840 | MtrunA17_Chr1g0158851 | 90.437 | 366 | 23 | 1 | 12 | 365 | 5 | 370 | 0.0 | 646 |
| Msa0009840 | MtrunA17_Chr3g0126551 | 77.650 | 349 | 60 | 3 | 24 | 356 | 11 | 357 | 0.0 | 518 |
| Msa0009840 | MtrunA17_Chr5g0413701 | 67.918 | 293 | 89 | 4 | 64 | 353 | 49 | 339 | 4.54e-152 | 432 |
| Msa0009840 | MtrunA17_Chr8g0365071 | 64.746 | 295 | 101 | 3 | 60 | 352 | 44 | 337 | 2.40e-146 | 417 |
| Msa0009840 | MtrunA17_Chr3g0117881 | 59.310 | 290 | 111 | 4 | 67 | 350 | 41 | 329 | 3.04e-119 | 348 |
| Msa0009840 | MtrunA17_Chr5g0394371 | 32.174 | 230 | 147 | 6 | 86 | 310 | 42 | 267 | 4.16e-31 | 120 |
| Msa0009840 | MtrunA17_Chr1g0150851 | 30.579 | 242 | 161 | 5 | 83 | 319 | 56 | 295 | 4.58e-29 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009840 | AT5G53120.1 | 73.563 | 348 | 74 | 2 | 24 | 355 | 11 | 356 | 6.18e-178 | 498 |
| Msa0009840 | AT5G53120.4 | 73.563 | 348 | 74 | 2 | 24 | 355 | 11 | 356 | 6.18e-178 | 498 |
| Msa0009840 | AT5G53120.2 | 73.563 | 348 | 74 | 2 | 24 | 355 | 11 | 356 | 6.18e-178 | 498 |
| Msa0009840 | AT5G53120.5 | 73.563 | 348 | 74 | 2 | 24 | 355 | 11 | 356 | 6.18e-178 | 498 |
| Msa0009840 | AT5G53120.3 | 73.563 | 348 | 74 | 2 | 24 | 355 | 11 | 356 | 6.18e-178 | 498 |
| Msa0009840 | AT5G53120.7 | 73.563 | 348 | 74 | 2 | 24 | 355 | 28 | 373 | 1.98e-177 | 498 |
| Msa0009840 | AT5G53120.6 | 66.133 | 375 | 82 | 4 | 24 | 355 | 11 | 383 | 2.54e-173 | 488 |
| Msa0009840 | AT1G23820.1 | 65.306 | 294 | 98 | 3 | 59 | 350 | 36 | 327 | 2.09e-147 | 420 |
| Msa0009840 | AT1G70310.1 | 65.306 | 294 | 100 | 2 | 59 | 350 | 40 | 333 | 3.34e-145 | 415 |
| Msa0009840 | AT1G23820.2 | 66.949 | 236 | 76 | 2 | 59 | 292 | 80 | 315 | 8.62e-120 | 350 |
| Msa0009840 | AT5G19530.2 | 29.778 | 225 | 151 | 5 | 83 | 302 | 40 | 262 | 1.36e-30 | 119 |
| Msa0009840 | AT5G19530.1 | 29.778 | 225 | 151 | 5 | 83 | 302 | 47 | 269 | 1.51e-30 | 119 |
Find 64 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCATTCTACTGTTCTTTC+TGG | 0.078496 | 1_1:-14687830 | Msa0009840:CDS |
| ATCAGACTTTCAAGAAGTTT+TGG | 0.257018 | 1_1:-14687127 | Msa0009840:CDS |
| GTGGAGATGGTGGAGTTCTA+AGG | 0.279701 | 1_1:-14686723 | Msa0009840:CDS |
| GGCTATTGTCCACAATATTC+TGG | 0.293164 | 1_1:+14687999 | None:intergenic |
| TATTTGTGAGATAGATAAAA+TGG | 0.298775 | 1_1:-14686665 | Msa0009840:CDS |
| GGAGATGAGTTATCATTTCT+TGG | 0.301977 | 1_1:+14686943 | None:intergenic |
| TGGCACTTTCCCTCAAGTTC+AGG | 0.317822 | 1_1:+14687848 | None:intergenic |
| GCTTCATACTCACCTTATTC+AGG | 0.325838 | 1_1:-14685663 | Msa0009840:CDS |
| AGATATTGTCCACAATATTC+TGG | 0.349802 | 1_1:+14687978 | None:intergenic |
| ATAGCATCATACTTTCCTTC+AGG | 0.354964 | 1_1:+14686311 | None:intergenic |
| TGGAGATCATGTCCTGAATA+AGG | 0.362663 | 1_1:+14685651 | None:intergenic |
| TTAGTTGTTGGTGGTGGAGA+TGG | 0.363986 | 1_1:-14686736 | Msa0009840:CDS |
| AGCAAATGTTTGTTGACAAA+TGG | 0.374139 | 1_1:+14685631 | None:intergenic |
| AATTCCTTCTTGTTGTTTGA+AGG | 0.410076 | 1_1:-14687885 | Msa0009840:CDS |
| CAATAATACCTTGGATATGT+TGG | 0.427530 | 1_1:+14685581 | None:intergenic |
| TGGTGGAGTGCTATGTAATA+TGG | 0.433597 | 1_1:-14685699 | Msa0009840:CDS |
| GGGAAAGTGCTTGTACTTGA+TGG | 0.443480 | 1_1:-14687002 | Msa0009840:CDS |
| ATTCTACTGTTCTTTCTGGA+TGG | 0.443685 | 1_1:-14687826 | Msa0009840:CDS |
| ATCGGGTTTACAAAATCAAC+TGG | 0.444824 | 1_1:+14685439 | None:intergenic |
| TTCTTGTTGTTTGAAGGCTA+AGG | 0.458947 | 1_1:-14687879 | Msa0009840:CDS |
| GGCACTTTCCCTCAAGTTCA+GGG | 0.460943 | 1_1:+14687849 | None:intergenic |
| GTTTCAGTCCCTGAACTTGA+GGG | 0.465362 | 1_1:-14687857 | Msa0009840:CDS |
| TTGGCAAGCAGTGGTGTGAT+AGG | 0.465537 | 1_1:-14685490 | Msa0009840:intron |
| TGGTGGTTTAGGTCCTGCTC+AGG | 0.476181 | 1_1:-14685771 | Msa0009840:intron |
| TCACAGTCTCAATCTTCCTC+TGG | 0.476437 | 1_1:-14687800 | Msa0009840:intron |
| GTTGTTGGTGGTGGAGATGG+TGG | 0.478081 | 1_1:-14686733 | Msa0009840:CDS |
| AGCGGACTTGAGGTTGGAAC+AGG | 0.480755 | 1_1:-14687941 | Msa0009840:CDS |
| TTCTCCACAAGTTCCTGAGC+AGG | 0.507685 | 1_1:+14685758 | None:intergenic |
| CTTTATCTTATGCTCAAAAG+AGG | 0.509069 | 1_1:-14685467 | Msa0009840:CDS |
| TCAAATCCAACAGCTAACTC+TGG | 0.513813 | 1_1:+14686518 | None:intergenic |
| GGTTTCAGTCCCTGAACTTG+AGG | 0.517686 | 1_1:-14687858 | Msa0009840:CDS |
| TTTATCTTATGCTCAAAAGA+GGG | 0.518661 | 1_1:-14685466 | Msa0009840:CDS |
| TTGCTTCTGTACGTTATGCA+TGG | 0.518868 | 1_1:-14685613 | Msa0009840:CDS |
| CTAAGCACATAAGAGAACTT+AGG | 0.523416 | 1_1:-14685387 | Msa0009840:CDS |
| CCAACATGCAGGTGTACTCT+AGG | 0.528257 | 1_1:+14686491 | None:intergenic |
| GGGATTGAATTGAACAAAGT+GGG | 0.530296 | 1_1:+14686922 | None:intergenic |
| GAATATTGTGGACAATATCT+CGG | 0.535195 | 1_1:-14687975 | Msa0009840:CDS |
| TGGAGATGGTGGAGTTCTAA+GGG | 0.538304 | 1_1:-14686722 | Msa0009840:CDS |
| AGGTCCTGCTCAGGAACTTG+TGG | 0.542040 | 1_1:-14685762 | Msa0009840:CDS |
| TTTCTTAGATGCACTCCTGA+AGG | 0.543593 | 1_1:-14686326 | Msa0009840:CDS |
| AAAACGGTGTAGCGGACTTG+AGG | 0.555308 | 1_1:-14687951 | Msa0009840:CDS |
| GTAATATGGCAGAAAGTATG+TGG | 0.561543 | 1_1:-14685685 | Msa0009840:CDS |
| GTTGATTCTTCTGATCCAGT+TGG | 0.564389 | 1_1:-14686284 | Msa0009840:intron |
| GGGGATTGAATTGAACAAAG+TGG | 0.569822 | 1_1:+14686921 | None:intergenic |
| ATCCAGAAAGAACAGTAGAA+TGG | 0.577016 | 1_1:+14687828 | None:intergenic |
| ATGCTCTAGCCAGAATATTG+TGG | 0.582845 | 1_1:-14688008 | Msa0009840:CDS |
| CGGTGTAGCGGACTTGAGGT+TGG | 0.599576 | 1_1:-14687947 | Msa0009840:CDS |
| AGATACCATCACCAACATGC+AGG | 0.601847 | 1_1:+14686480 | None:intergenic |
| GGACAATAGCCAGAATATTG+TGG | 0.603507 | 1_1:-14687987 | Msa0009840:CDS |
| AGAACTTAGGTTCTATAACT+CGG | 0.610249 | 1_1:-14685374 | Msa0009840:CDS |
| TTAGCCTTCAAACAACAAGA+AGG | 0.633703 | 1_1:+14687881 | None:intergenic |
| TTATCTTATGCTCAAAAGAG+GGG | 0.634919 | 1_1:-14685465 | Msa0009840:CDS |
| AATTGTTCAGTTGACTGAGA+AGG | 0.638902 | 1_1:-14686979 | Msa0009840:CDS |
| CCTAGAGTACACCTGCATGT+TGG | 0.640270 | 1_1:-14686491 | Msa0009840:CDS |
| TCAAAGGCATTAAGACCTGG+TGG | 0.642147 | 1_1:-14685716 | Msa0009840:CDS |
| ATATTACATAGCACTCCACC+AGG | 0.645573 | 1_1:+14685701 | None:intergenic |
| GAATTGTGTAGATATAGAGA+AGG | 0.649083 | 1_1:-14687909 | Msa0009840:CDS |
| CTAGTGTTCCAACATATCCA+AGG | 0.650334 | 1_1:-14685589 | Msa0009840:intron |
| GTACACCTGCATGTTGGTGA+TGG | 0.658823 | 1_1:-14686485 | Msa0009840:intron |
| TTATCAAAGGCATTAAGACC+TGG | 0.670906 | 1_1:-14685719 | Msa0009840:CDS |
| GGGTTTACAAAATCAACTGG+TGG | 0.688551 | 1_1:+14685442 | None:intergenic |
| CATGAGTTACAGAACTGTGG+CGG | 0.698296 | 1_1:+14686692 | None:intergenic |
| ACTTAGGTTCTATAACTCGG+AGG | 0.698666 | 1_1:-14685371 | Msa0009840:intron |
| CAACATGAGTTACAGAACTG+TGG | 0.702544 | 1_1:+14686689 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAAAAAAATCAACTATA+TGG | + | chr1_1:14686000-14686019 | None:intergenic | 10.0% |
| !!! | TTTAATTTTTTTTGCATTCT+TGG | - | chr1_1:14684836-14684855 | Msa0009840:intron | 15.0% |
| !!! | TTTTTCTAACTACTAAAATT+TGG | - | chr1_1:14685295-14685314 | Msa0009840:intron | 15.0% |
| !! | TTTAAAAAATAGTTGTGAAA+CGG | + | chr1_1:14685331-14685350 | None:intergenic | 15.0% |
| !!! | AAAAATAACATAACTGTTTT+GGG | + | chr1_1:14685698-14685717 | None:intergenic | 15.0% |
| !!! | CATTTAGGATATTTATAAAA+CGG | + | chr1_1:14685815-14685834 | None:intergenic | 15.0% |
| !! | TTAAAAACTATAATATCATG+AGG | - | chr1_1:14686527-14686546 | Msa0009840:CDS | 15.0% |
| !!! | ACTTTATTTTTTTAAAAACC+AGG | - | chr1_1:14686613-14686632 | Msa0009840:intron | 15.0% |
| !!! | CTTTATTTTTTTAAAAACCA+GGG | - | chr1_1:14686614-14686633 | Msa0009840:intron | 15.0% |
| !!! | TTTATTTTTTTAAAAACCAG+GGG | - | chr1_1:14686615-14686634 | Msa0009840:intron | 15.0% |
| !!! | AAAAATAGAATAATTTGCTT+TGG | + | chr1_1:14686719-14686738 | None:intergenic | 15.0% |
| !!! | AAAGTAAATTTTATCTAGAA+AGG | + | chr1_1:14687861-14687880 | None:intergenic | 15.0% |
| !!! | TTTCCAGTATTTTTTTAAAC+AGG | - | chr1_1:14684928-14684947 | Msa0009840:intron | 20.0% |
| !! | TTACCTGTTTAAAAAAATAC+TGG | + | chr1_1:14684934-14684953 | None:intergenic | 20.0% |
| !! | ACAAGTATTTATTATGCAAT+TGG | + | chr1_1:14684995-14685014 | None:intergenic | 20.0% |
| !! | ACAAACATATAGTATAGATT+TGG | + | chr1_1:14685090-14685109 | None:intergenic | 20.0% |
| !!! | TTGATTAACACCAATTATTT+TGG | - | chr1_1:14685550-14685569 | Msa0009840:intron | 20.0% |
| !!! | TTTTACAGTCATTAACATAT+GGG | - | chr1_1:14685573-14685592 | Msa0009840:intron | 20.0% |
| !!! | AAAATAACATAACTGTTTTG+GGG | + | chr1_1:14685697-14685716 | None:intergenic | 20.0% |
| !!! | CAAAAATAACATAACTGTTT+TGG | + | chr1_1:14685699-14685718 | None:intergenic | 20.0% |
| !!! | CGTTTTATAAATATCCTAAA+TGG | - | chr1_1:14685813-14685832 | Msa0009840:intron | 20.0% |
| !! | TAACAACATTAAAACCATTT+AGG | + | chr1_1:14685830-14685849 | None:intergenic | 20.0% |
| !! | TATTTGTGAGATAGATAAAA+TGG | - | chr1_1:14685930-14685949 | Msa0009840:intron | 20.0% |
| !! | TTATTTACTGTGAAATATGT+TGG | - | chr1_1:14686400-14686419 | Msa0009840:intron | 20.0% |
| !!! | TTTGATAATGTCACAAAAAA+TGG | + | chr1_1:14686864-14686883 | None:intergenic | 20.0% |
| !!! | ATTTTTTGTGACATTATCAA+AGG | - | chr1_1:14686863-14686882 | Msa0009840:intron | 20.0% |
| !! | ATCATTAATAAAGGATATGT+TGG | + | chr1_1:14687059-14687078 | None:intergenic | 20.0% |
| !! | TAAGATGCAATCATTAATAA+AGG | + | chr1_1:14687068-14687087 | None:intergenic | 20.0% |
| !!! | AGATTCTAAAATCCTTATTT+TGG | - | chr1_1:14687545-14687564 | Msa0009840:intron | 20.0% |
| !! | GTATTTGAAAATCCAAAATA+AGG | + | chr1_1:14687560-14687579 | None:intergenic | 20.0% |
| ! | AAACACATTAACATAAGTGA+AGG | + | chr1_1:14684876-14684895 | None:intergenic | 25.0% |
| ! | TTTATTTCAACAATCCAATG+TGG | - | chr1_1:14684959-14684978 | Msa0009840:intron | 25.0% |
| ! | AGTAGAAAAAATATTGTACG+AGG | - | chr1_1:14685441-14685460 | Msa0009840:CDS | 25.0% |
| ! | GACTGTAAAACCAAAATAAT+TGG | + | chr1_1:14685563-14685582 | None:intergenic | 25.0% |
| !! | GTTTTACAGTCATTAACATA+TGG | - | chr1_1:14685572-14685591 | Msa0009840:intron | 25.0% |
| !!! | AAATAACATAACTGTTTTGG+GGG | + | chr1_1:14685696-14685715 | None:intergenic | 25.0% |
| ! | TTGGATCGATTAAAATCAAA+CGG | + | chr1_1:14685791-14685810 | None:intergenic | 25.0% |
| ! | AGGATATTTATAAAACGGTT+TGG | + | chr1_1:14685810-14685829 | None:intergenic | 25.0% |
| ! | TAATAAAATGACATACCAAC+TGG | + | chr1_1:14686329-14686348 | None:intergenic | 25.0% |
| ! | TATTAACACAAAGATACAAG+AGG | + | chr1_1:14686364-14686383 | None:intergenic | 25.0% |
| ! | AACTAAATGTATATCAGCTT+AGG | + | chr1_1:14686447-14686466 | None:intergenic | 25.0% |
| !!! | CATTTAGTTTGTTATGTTTG+AGG | - | chr1_1:14686458-14686477 | Msa0009840:intron | 25.0% |
| !!! | GTTTCTTCATACTCATTTTT+GGG | - | chr1_1:14686549-14686568 | Msa0009840:intron | 25.0% |
| ! | ACAATTTCAATGTAAAGTGT+CGG | + | chr1_1:14686668-14686687 | None:intergenic | 25.0% |
| ! | CTTTACATTGAAATTGTCTT+TGG | - | chr1_1:14686671-14686690 | Msa0009840:CDS | 25.0% |
| ! | TCTCTTATTATCTCTTTCTT+TGG | - | chr1_1:14686804-14686823 | Msa0009840:intron | 25.0% |
| ! | TTTATCTTATGCTCAAAAGA+GGG | - | chr1_1:14687129-14687148 | Msa0009840:CDS | 25.0% |
| !!! | TGTCTTCAACTTTTTCAATA+GGG | + | chr1_1:14687185-14687204 | None:intergenic | 25.0% |
| !!! | TTGTCTTCAACTTTTTCAAT+AGG | + | chr1_1:14687186-14687205 | None:intergenic | 25.0% |
| ! | TAGAAGCAACAAATATCTTT+GGG | + | chr1_1:14687267-14687286 | None:intergenic | 25.0% |
| !! | AAATATGCATGCATTTTGAA+CGG | - | chr1_1:14687585-14687604 | Msa0009840:intron | 25.0% |
| ! | ATGCTATTATTACTCGAAAA+TGG | + | chr1_1:14687680-14687699 | None:intergenic | 25.0% |
| !! | ATTTTGTGTTTTGTCATGAA+TGG | - | chr1_1:14687707-14687726 | Msa0009840:intron | 25.0% |
| ! | ACAATAGAAGAAAGAAAAAC+AGG | + | chr1_1:14687761-14687780 | None:intergenic | 25.0% |
| ! | TCAATAGACAGAATAAAACT+TGG | + | chr1_1:14687805-14687824 | None:intergenic | 25.0% |
| AGATATTGTCCACAATATTC+TGG | + | chr1_1:14684620-14684639 | None:intergenic | 30.0% | |
| GAATATTGTGGACAATATCT+CGG | - | chr1_1:14684620-14684639 | Msa0009840:CDS | 30.0% | |
| GAATTGTGTAGATATAGAGA+AGG | - | chr1_1:14684686-14684705 | Msa0009840:intron | 30.0% | |
| !! | AATTCCTTCTTGTTGTTTGA+AGG | - | chr1_1:14684710-14684729 | Msa0009840:intron | 30.0% |
| TATTTGTATGAGTGCATGTT+TGG | - | chr1_1:14685154-14685173 | Msa0009840:intron | 30.0% | |
| ! | TTGTGTAGTGTTAGTATTGA+TGG | - | chr1_1:14685380-14685399 | Msa0009840:CDS | 30.0% |
| !!! | AGTGTTAGTATTGATGGTTT+TGG | - | chr1_1:14685386-14685405 | Msa0009840:CDS | 30.0% |
| ! | ATCAGACTTTCAAGAAGTTT+TGG | - | chr1_1:14685468-14685487 | Msa0009840:CDS | 30.0% |
| !!! | TCAAGAAGTTTTGGTTTTTG+AGG | - | chr1_1:14685477-14685496 | Msa0009840:CDS | 30.0% |
| ! | GTTTTACCTTATCATTGTGA+CGG | - | chr1_1:14685718-14685737 | Msa0009840:CDS | 30.0% |
| TCGATTAAAATCAAACGGTT+TGG | + | chr1_1:14685786-14685805 | None:intergenic | 30.0% | |
| CAATTGATCATTCATTCACT+AGG | - | chr1_1:14686037-14686056 | Msa0009840:intron | 30.0% | |
| ! | GGTTTCTTCATACTCATTTT+TGG | - | chr1_1:14686548-14686567 | Msa0009840:intron | 30.0% |
| CTTATTATCTCTTTCTTTGG+TGG | - | chr1_1:14686807-14686826 | Msa0009840:intron | 30.0% | |
| ! | AGCAAATGTTTGTTGACAAA+TGG | + | chr1_1:14686967-14686986 | None:intergenic | 30.0% |
| CAATAATACCTTGGATATGT+TGG | + | chr1_1:14687017-14687036 | None:intergenic | 30.0% | |
| TATTTGTCTTCTTCCTTGTT+TGG | - | chr1_1:14687086-14687105 | Msa0009840:intron | 30.0% | |
| CTTTATCTTATGCTCAAAAG+AGG | - | chr1_1:14687128-14687147 | Msa0009840:CDS | 30.0% | |
| TTATCTTATGCTCAAAAGAG+GGG | - | chr1_1:14687130-14687149 | Msa0009840:CDS | 30.0% | |
| !!! | ACTTTTTCAATAGGGTTGAT+CGG | + | chr1_1:14687177-14687196 | None:intergenic | 30.0% |
| AGAACTTAGGTTCTATAACT+CGG | - | chr1_1:14687221-14687240 | Msa0009840:intron | 30.0% | |
| GTAGAAGCAACAAATATCTT+TGG | + | chr1_1:14687268-14687287 | None:intergenic | 30.0% | |
| ! | TGTTGCTTCTACAAAGTTAA+AGG | - | chr1_1:14687276-14687295 | Msa0009840:intron | 30.0% |
| GTTGCGAATAATCATCATAT+TGG | - | chr1_1:14687494-14687513 | Msa0009840:intron | 30.0% | |
| ! | TTTCGAGTAATAATAGCATG+TGG | - | chr1_1:14687681-14687700 | Msa0009840:intron | 30.0% |
| TGGCAAAAGAATAAATGAGT+GGG | + | chr1_1:14687785-14687804 | None:intergenic | 30.0% | |
| TTGGCAAAAGAATAAATGAG+TGG | + | chr1_1:14687786-14687805 | None:intergenic | 30.0% | |
| ! | TGTCTATTGATTGCATTAGA+TGG | - | chr1_1:14687815-14687834 | Msa0009840:CDS | 30.0% |
| !! | TTTACCAGCATTTTTGAAGA+GGG | - | chr1_1:14687960-14687979 | Msa0009840:CDS | 30.0% |
| TGGACAATATCTCGGAAAAA+CGG | - | chr1_1:14684628-14684647 | Msa0009840:CDS | 35.0% | |
| ! | TTAGCCTTCAAACAACAAGA+AGG | + | chr1_1:14684717-14684736 | None:intergenic | 35.0% |
| !! | TTCTTGTTGTTTGAAGGCTA+AGG | - | chr1_1:14684716-14684735 | Msa0009840:intron | 35.0% |
| ATCCAGAAAGAACAGTAGAA+TGG | + | chr1_1:14684770-14684789 | None:intergenic | 35.0% | |
| ATTCTACTGTTCTTTCTGGA+TGG | - | chr1_1:14684769-14684788 | Msa0009840:intron | 35.0% | |
| ATTATGCAATTGGACAAACC+TGG | + | chr1_1:14684985-14685004 | None:intergenic | 35.0% | |
| GATGTCTAACTTTGATCGAA+TGG | - | chr1_1:14685029-14685048 | Msa0009840:intron | 35.0% | |
| !!! | TGGTTTTGGTTTCTATCATC+AGG | - | chr1_1:14685400-14685419 | Msa0009840:CDS | 35.0% |
| AATTGTTCAGTTGACTGAGA+AGG | - | chr1_1:14685616-14685635 | Msa0009840:CDS | 35.0% | |
| GGAGATGAGTTATCATTTCT+TGG | + | chr1_1:14685655-14685674 | None:intergenic | 35.0% | |
| GGGATTGAATTGAACAAAGT+GGG | + | chr1_1:14685676-14685695 | None:intergenic | 35.0% | |
| !! | GGTTTTAATGTTGTTAGTCC+AGG | - | chr1_1:14685834-14685853 | Msa0009840:intron | 35.0% |
| !!! | TTAGTCCAGGTTTTAGTTGT+TGG | - | chr1_1:14685847-14685866 | Msa0009840:intron | 35.0% |
| ! | TATTTTCCAGAGTTAGCTGT+TGG | - | chr1_1:14686071-14686090 | Msa0009840:intron | 35.0% |
| ATAGCATCATACTTTCCTTC+AGG | + | chr1_1:14686287-14686306 | None:intergenic | 35.0% | |
| CACAAAGATACAAGAGGAAT+CGG | + | chr1_1:14686358-14686377 | None:intergenic | 35.0% | |
| TAAAAACCAGGGGATCAAAA+TGG | - | chr1_1:14686625-14686644 | Msa0009840:intron | 35.0% | |
| !!! | TTGGTGACATGTTTTAGTGT+CGG | - | chr1_1:14686690-14686709 | Msa0009840:CDS | 35.0% |
| ! | ATCTCTTTCTTTGGTGGTTT+AGG | - | chr1_1:14686813-14686832 | Msa0009840:intron | 35.0% |
| !! | TTATCAAAGGCATTAAGACC+TGG | - | chr1_1:14686876-14686895 | Msa0009840:intron | 35.0% |
| ! | GTAATATGGCAGAAAGTATG+TGG | - | chr1_1:14686910-14686929 | Msa0009840:intron | 35.0% |
| GAGTCTGAACAATAATACCT+TGG | + | chr1_1:14687026-14687045 | None:intergenic | 35.0% | |
| ATCGGGTTTACAAAATCAAC+TGG | + | chr1_1:14687159-14687178 | None:intergenic | 35.0% | |
| !!! | CTTTTTCAATAGGGTTGATC+GGG | + | chr1_1:14687176-14687195 | None:intergenic | 35.0% |
| CTAAGCACATAAGAGAACTT+AGG | - | chr1_1:14687208-14687227 | Msa0009840:intron | 35.0% | |
| ! | TACAAAGTTAAAGGCGTGTT+CGG | - | chr1_1:14687285-14687304 | Msa0009840:intron | 35.0% |
| TGTAATCACAAGTGTCCTAT+CGG | + | chr1_1:14687330-14687349 | None:intergenic | 35.0% | |
| GCGAATAATCATCATATTGG+TGG | - | chr1_1:14687497-14687516 | Msa0009840:intron | 35.0% | |
| !! | CTTTACCAGCATTTTTGAAG+AGG | - | chr1_1:14687959-14687978 | Msa0009840:CDS | 35.0% |
| ATGCTCTAGCCAGAATATTG+TGG | - | chr1_1:14684587-14684606 | Msa0009840:CDS | 40.0% | |
| GGCTATTGTCCACAATATTC+TGG | + | chr1_1:14684599-14684618 | None:intergenic | 40.0% | |
| GGACAATAGCCAGAATATTG+TGG | - | chr1_1:14684608-14684627 | Msa0009840:CDS | 40.0% | |
| TGCCATTCTACTGTTCTTTC+TGG | - | chr1_1:14684765-14684784 | Msa0009840:intron | 40.0% | |
| GAATGGTTCAGATGAATGTG+TGG | - | chr1_1:14685046-14685065 | Msa0009840:intron | 40.0% | |
| !! | TGTTGATGACACAGTGAGTT+AGG | + | chr1_1:14685258-14685277 | None:intergenic | 40.0% |
| GGGGATTGAATTGAACAAAG+TGG | + | chr1_1:14685677-14685696 | None:intergenic | 40.0% | |
| CGAATTCCGTCACAATGATA+AGG | + | chr1_1:14685727-14685746 | None:intergenic | 40.0% | |
| CAACATGAGTTACAGAACTG+TGG | + | chr1_1:14685909-14685928 | None:intergenic | 40.0% | |
| TCAAATCCAACAGCTAACTC+TGG | + | chr1_1:14686080-14686099 | None:intergenic | 40.0% | |
| TTTCTTAGATGCACTCCTGA+AGG | - | chr1_1:14686269-14686288 | Msa0009840:intron | 40.0% | |
| ! | GTTGATTCTTCTGATCCAGT+TGG | - | chr1_1:14686311-14686330 | Msa0009840:CDS | 40.0% |
| ATATTACATAGCACTCCACC+AGG | + | chr1_1:14686897-14686916 | None:intergenic | 40.0% | |
| ! | TGGTGGAGTGCTATGTAATA+TGG | - | chr1_1:14686896-14686915 | Msa0009840:intron | 40.0% |
| GCTTCATACTCACCTTATTC+AGG | - | chr1_1:14686932-14686951 | Msa0009840:CDS | 40.0% | |
| TGGAGATCATGTCCTGAATA+AGG | + | chr1_1:14686947-14686966 | None:intergenic | 40.0% | |
| TTGCTTCTGTACGTTATGCA+TGG | - | chr1_1:14686982-14687001 | Msa0009840:CDS | 40.0% | |
| CTAGTGTTCCAACATATCCA+AGG | - | chr1_1:14687006-14687025 | Msa0009840:CDS | 40.0% | |
| GGGTTTACAAAATCAACTGG+TGG | + | chr1_1:14687156-14687175 | None:intergenic | 40.0% | |
| ACTTAGGTTCTATAACTCGG+AGG | - | chr1_1:14687224-14687243 | Msa0009840:intron | 40.0% | |
| ! | ATCATCATATTGGTGGCCAT+TGG | - | chr1_1:14687504-14687523 | Msa0009840:intron | 40.0% |
| ATCTCGGAAAAACGGTGTAG+CGG | - | chr1_1:14684636-14684655 | Msa0009840:CDS | 45.0% | |
| GTTTCAGTCCCTGAACTTGA+GGG | - | chr1_1:14684738-14684757 | Msa0009840:intron | 45.0% | |
| TCACAGTCTCAATCTTCCTC+TGG | - | chr1_1:14684795-14684814 | Msa0009840:intron | 45.0% | |
| !! | GCATGATTGATGATGACCAG+AGG | + | chr1_1:14684814-14684833 | None:intergenic | 45.0% |
| TTCAACAATCCAATGTGGCC+AGG | - | chr1_1:14684964-14684983 | Msa0009840:intron | 45.0% | |
| !! | GGGAAAGTGCTTGTACTTGA+TGG | - | chr1_1:14685593-14685612 | Msa0009840:CDS | 45.0% |
| TGACGGAATTCGATTCCATG+CGG | - | chr1_1:14685735-14685754 | Msa0009840:CDS | 45.0% | |
| AATGAATATCCACGACCGCA+TGG | + | chr1_1:14685753-14685772 | None:intergenic | 45.0% | |
| !!! | GTCCAGGTTTTAGTTGTTGG+TGG | - | chr1_1:14685850-14685869 | Msa0009840:intron | 45.0% |
| CACCACCAACAACTAAAACC+TGG | + | chr1_1:14685855-14685874 | None:intergenic | 45.0% | |
| !!! | CAGGTTTTAGTTGTTGGTGG+TGG | - | chr1_1:14685853-14685872 | Msa0009840:intron | 45.0% |
| !! | TTAGTTGTTGGTGGTGGAGA+TGG | - | chr1_1:14685859-14685878 | Msa0009840:intron | 45.0% |
| !! | TGGAGATGGTGGAGTTCTAA+GGG | - | chr1_1:14685873-14685892 | Msa0009840:intron | 45.0% |
| CATGAGTTACAGAACTGTGG+CGG | + | chr1_1:14685906-14685925 | None:intergenic | 45.0% | |
| AGATACCATCACCAACATGC+AGG | + | chr1_1:14686118-14686137 | None:intergenic | 45.0% | |
| !! | TTCTAGCCATTTTGATCCCC+TGG | + | chr1_1:14686634-14686653 | None:intergenic | 45.0% |
| !! | TCAAAGGCATTAAGACCTGG+TGG | - | chr1_1:14686879-14686898 | Msa0009840:intron | 45.0% |
| !! | ACCAGCATTTTTGAAGAGGG+AGG | - | chr1_1:14687963-14687982 | Msa0009840:CDS | 45.0% |
| ACCTCCCTCTTCAAAAATGC+TGG | + | chr1_1:14687967-14687986 | None:intergenic | 45.0% | |
| !! | AAAACGGTGTAGCGGACTTG+AGG | - | chr1_1:14684644-14684663 | Msa0009840:CDS | 50.0% |
| GGTTTCAGTCCCTGAACTTG+AGG | - | chr1_1:14684737-14684756 | Msa0009840:intron | 50.0% | |
| GGCACTTTCCCTCAAGTTCA+GGG | + | chr1_1:14684749-14684768 | None:intergenic | 50.0% | |
| TGGCACTTTCCCTCAAGTTC+AGG | + | chr1_1:14684750-14684769 | None:intergenic | 50.0% | |
| TTGGACAAACCTGGCCACAT+TGG | + | chr1_1:14684976-14684995 | None:intergenic | 50.0% | |
| AATTCGATTCCATGCGGTCG+TGG | - | chr1_1:14685741-14685760 | Msa0009840:CDS | 50.0% | |
| !! | GTGGAGATGGTGGAGTTCTA+AGG | - | chr1_1:14685872-14685891 | Msa0009840:intron | 50.0% |
| CCAACATGCAGGTGTACTCT+AGG | + | chr1_1:14686107-14686126 | None:intergenic | 50.0% | |
| CCTAGAGTACACCTGCATGT+TGG | - | chr1_1:14686104-14686123 | Msa0009840:intron | 50.0% | |
| ! | GTACACCTGCATGTTGGTGA+TGG | - | chr1_1:14686110-14686129 | Msa0009840:intron | 50.0% |
| !! | GTAAAGTGTCGGTGCTACAG+AGG | + | chr1_1:14686657-14686676 | None:intergenic | 50.0% |
| TTCTCCACAAGTTCCTGAGC+AGG | + | chr1_1:14686840-14686859 | None:intergenic | 50.0% | |
| ! | CTTCCTTGTTTGGCAAGCAG+TGG | - | chr1_1:14687096-14687115 | Msa0009840:intron | 50.0% |
| ACACCACTGCTTGCCAAACA+AGG | + | chr1_1:14687102-14687121 | None:intergenic | 50.0% | |
| TTGGCAAGCAGTGGTGTGAT+AGG | - | chr1_1:14687105-14687124 | Msa0009840:intron | 50.0% | |
| TGGTGGCCATTGGATCAAGA+TGG | - | chr1_1:14687514-14687533 | Msa0009840:intron | 50.0% | |
| GGTGGCCATTGGATCAAGAT+GGG | - | chr1_1:14687515-14687534 | Msa0009840:intron | 50.0% | |
| GCCATTGGATCAAGATGGGA+CGG | - | chr1_1:14687519-14687538 | Msa0009840:intron | 50.0% | |
| ACCGTCCCATCTTGATCCAA+TGG | + | chr1_1:14687523-14687542 | None:intergenic | 50.0% | |
| TACCCTAGCTGTGTGAATGC+AGG | - | chr1_1:14687634-14687653 | Msa0009840:intron | 50.0% | |
| ACCCTAGCTGTGTGAATGCA+GGG | - | chr1_1:14687635-14687654 | Msa0009840:intron | 50.0% | |
| ACCCTGCATTCACACAGCTA+GGG | + | chr1_1:14687639-14687658 | None:intergenic | 50.0% | |
| TACCCTGCATTCACACAGCT+AGG | + | chr1_1:14687640-14687659 | None:intergenic | 50.0% | |
| ! | AGCGGACTTGAGGTTGGAAC+AGG | - | chr1_1:14684654-14684673 | Msa0009840:CDS | 55.0% |
| !! | GTTGTTGGTGGTGGAGATGG+TGG | - | chr1_1:14685862-14685881 | Msa0009840:intron | 55.0% |
| TGGTGGTTTAGGTCCTGCTC+AGG | - | chr1_1:14686824-14686843 | Msa0009840:intron | 55.0% | |
| AGGTCCTGCTCAGGAACTTG+TGG | - | chr1_1:14686833-14686852 | Msa0009840:intron | 55.0% | |
| TGACACGTGTCGTGTCCGAT+AGG | - | chr1_1:14687312-14687331 | Msa0009840:intron | 55.0% | |
| CGACGTGTCAGTGTCATGTC+AGG | - | chr1_1:14687386-14687405 | Msa0009840:intron | 55.0% | |
| !! | CGGTGTAGCGGACTTGAGGT+TGG | - | chr1_1:14684648-14684667 | Msa0009840:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 14684582 | 14688035 | 14684582 | ID=Msa0009840;Name=Msa0009840 |
| chr1_1 | mRNA | 14684582 | 14688035 | 14684582 | ID=Msa0009840-mRNA-1;Parent=Msa0009840;Name=Msa0009840-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|1|1|1|9|0|367 |
| chr1_1 | exon | 14687801 | 14688035 | 14687801 | ID=Msa0009840-mRNA-1:exon:5429;Parent=Msa0009840-mRNA-1 |
| chr1_1 | exon | 14687119 | 14687195 | 14687119 | ID=Msa0009840-mRNA-1:exon:5428;Parent=Msa0009840-mRNA-1 |
| chr1_1 | exon | 14686914 | 14687036 | 14686914 | ID=Msa0009840-mRNA-1:exon:5427;Parent=Msa0009840-mRNA-1 |
| chr1_1 | exon | 14686657 | 14686761 | 14686657 | ID=Msa0009840-mRNA-1:exon:5426;Parent=Msa0009840-mRNA-1 |
| chr1_1 | exon | 14686486 | 14686558 | 14686486 | ID=Msa0009840-mRNA-1:exon:5425;Parent=Msa0009840-mRNA-1 |
| chr1_1 | exon | 14686285 | 14686356 | 14686285 | ID=Msa0009840-mRNA-1:exon:5424;Parent=Msa0009840-mRNA-1 |
| chr1_1 | exon | 14685590 | 14685782 | 14685590 | ID=Msa0009840-mRNA-1:exon:5423;Parent=Msa0009840-mRNA-1 |
| chr1_1 | exon | 14685372 | 14685501 | 14685372 | ID=Msa0009840-mRNA-1:exon:5422;Parent=Msa0009840-mRNA-1 |
| chr1_1 | exon | 14684582 | 14684677 | 14684582 | ID=Msa0009840-mRNA-1:exon:5421;Parent=Msa0009840-mRNA-1 |
| chr1_1 | CDS | 14687801 | 14688035 | 14687801 | ID=Msa0009840-mRNA-1:cds;Parent=Msa0009840-mRNA-1 |
| chr1_1 | CDS | 14687119 | 14687195 | 14687119 | ID=Msa0009840-mRNA-1:cds;Parent=Msa0009840-mRNA-1 |
| chr1_1 | CDS | 14686914 | 14687036 | 14686914 | ID=Msa0009840-mRNA-1:cds;Parent=Msa0009840-mRNA-1 |
| chr1_1 | CDS | 14686657 | 14686761 | 14686657 | ID=Msa0009840-mRNA-1:cds;Parent=Msa0009840-mRNA-1 |
| chr1_1 | CDS | 14686486 | 14686558 | 14686486 | ID=Msa0009840-mRNA-1:cds;Parent=Msa0009840-mRNA-1 |
| chr1_1 | CDS | 14686285 | 14686356 | 14686285 | ID=Msa0009840-mRNA-1:cds;Parent=Msa0009840-mRNA-1 |
| chr1_1 | CDS | 14685590 | 14685782 | 14685590 | ID=Msa0009840-mRNA-1:cds;Parent=Msa0009840-mRNA-1 |
| chr1_1 | CDS | 14685372 | 14685501 | 14685372 | ID=Msa0009840-mRNA-1:cds;Parent=Msa0009840-mRNA-1 |
| chr1_1 | CDS | 14684582 | 14684677 | 14684582 | ID=Msa0009840-mRNA-1:cds;Parent=Msa0009840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
