Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139760 | KAH0637761.1 | 69.919 | 123 | 13 | 1 | 140 | 262 | 1 | 99 | 3.17e-40 | 171 |
| Msa0139760 | KAH0637761.1 | 84.836 | 488 | 23 | 2 | 262 | 698 | 225 | 712 | 0.0 | 837 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139760 | sp|Q9BBS7|RPOC2_LOTJA | 88.856 | 341 | 10 | 1 | 386 | 698 | 15 | 355 | 0.0 | 624 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139760 | A0A7J7MA35 | 64.844 | 128 | 12 | 1 | 135 | 262 | 52 | 146 | 6.83e-37 | 160 |
| Msa0139760 | A0A7J7MA35 | 85.744 | 477 | 28 | 2 | 262 | 698 | 272 | 748 | 0.0 | 832 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0139760 | Msa0139800 | 0.824057 | 9.918900e-54 | -8.615850e-47 |
| Msa0139760 | Msa0139810 | 0.886067 | 4.719054e-72 | -8.615850e-47 |
| Msa0139760 | Msa0268990 | 0.809328 | 1.998045e-50 | -8.615850e-47 |
| Msa0139760 | Msa1086250 | 0.830548 | 2.759588e-55 | -8.615850e-47 |
| Msa0139760 | Msa1143130 | 0.804884 | 1.743282e-49 | -8.615850e-47 |
| Msa0139760 | Msa1380620 | 0.826392 | 2.782607e-54 | -8.615850e-47 |
| Msa0139760 | Msa1380680 | 0.809328 | 1.998309e-50 | -8.615850e-47 |
| Msa0139760 | Msa1380690 | 0.831590 | 1.531356e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139760 | MtrunA17_CPg0493001 | 90.435 | 345 | 5 | 1 | 382 | 698 | 15 | 359 | 0.0 | 637 |
| Msa0139760 | MtrunA17_Chr4g0016671 | 90.435 | 345 | 5 | 1 | 382 | 698 | 15 | 359 | 0.0 | 637 |
| Msa0139760 | MtrunA17_Chr8g0342181 | 77.985 | 268 | 8 | 1 | 173 | 389 | 1 | 268 | 1.56e-138 | 408 |
| Msa0139760 | MtrunA17_Chr4g0015581 | 85.641 | 195 | 0 | 1 | 486 | 652 | 1 | 195 | 2.53e-111 | 341 |
| Msa0139760 | MtrunA17_Chr3g0108441 | 97.076 | 171 | 3 | 1 | 94 | 262 | 11 | 181 | 7.10e-110 | 341 |
| Msa0139760 | MtrunA17_Chr3g0108441 | 98.438 | 128 | 2 | 0 | 262 | 389 | 307 | 434 | 2.44e-79 | 261 |
| Msa0139760 | MtrunA17_Chr3g0108491 | 97.076 | 171 | 3 | 1 | 94 | 262 | 11 | 181 | 2.17e-108 | 340 |
| Msa0139760 | MtrunA17_Chr3g0108491 | 98.438 | 128 | 2 | 0 | 262 | 389 | 307 | 434 | 2.35e-78 | 261 |
| Msa0139760 | MtrunA17_CPg0493021 | 97.076 | 171 | 3 | 1 | 94 | 262 | 11 | 181 | 2.17e-108 | 340 |
| Msa0139760 | MtrunA17_CPg0493021 | 98.438 | 128 | 2 | 0 | 262 | 389 | 307 | 434 | 2.35e-78 | 261 |
| Msa0139760 | MtrunA17_Chr4g0016661 | 97.076 | 171 | 3 | 1 | 94 | 262 | 11 | 181 | 2.17e-108 | 340 |
| Msa0139760 | MtrunA17_Chr4g0016661 | 98.438 | 128 | 2 | 0 | 262 | 389 | 307 | 434 | 2.35e-78 | 261 |
| Msa0139760 | MtrunA17_Chr4g0016641 | 100.000 | 82 | 0 | 0 | 1 | 82 | 993 | 1074 | 2.94e-43 | 168 |
| Msa0139760 | MtrunA17_CPg0493041 | 100.000 | 82 | 0 | 0 | 1 | 82 | 993 | 1074 | 2.94e-43 | 168 |
| Msa0139760 | MtrunA17_Chr4g0015551 | 89.062 | 64 | 7 | 0 | 199 | 262 | 5 | 68 | 6.56e-31 | 119 |
| Msa0139760 | MtrunA17_Chr2g0318321 | 90.164 | 61 | 6 | 0 | 382 | 442 | 34 | 94 | 2.02e-30 | 115 |
| Msa0139760 | MtrunA17_Chr4g0015541 | 100.000 | 52 | 0 | 0 | 31 | 82 | 134 | 185 | 9.91e-25 | 105 |
| Msa0139760 | MtrunA17_Chr4g0002751 | 86.538 | 52 | 7 | 0 | 211 | 262 | 1 | 52 | 9.18e-23 | 93.2 |
| Msa0139760 | MtrunA17_Chr4g0030401 | 40.206 | 97 | 58 | 0 | 284 | 380 | 453 | 549 | 5.79e-16 | 82.4 |
| Msa0139760 | MtrunA17_Chr4g0030391 | 35.537 | 121 | 77 | 1 | 261 | 380 | 428 | 548 | 1.62e-15 | 80.9 |
| Msa0139760 | MtrunA17_Chr4g0002761 | 66.667 | 54 | 18 | 0 | 332 | 385 | 1 | 54 | 2.60e-15 | 71.6 |
| Msa0139760 | MtrunA17_Chr4g0015571 | 94.286 | 35 | 2 | 0 | 383 | 417 | 16 | 50 | 4.69e-15 | 70.1 |
| Msa0139760 | MtrunA17_Chr4g0044991 | 34.483 | 116 | 75 | 1 | 266 | 380 | 509 | 624 | 9.38e-13 | 72.0 |
| Msa0139760 | MtrunA17_Chr5g0406121 | 33.962 | 106 | 70 | 0 | 275 | 380 | 443 | 548 | 3.85e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139760 | ATCG00170.1 | 85.965 | 342 | 18 | 1 | 387 | 698 | 16 | 357 | 0.0 | 602 |
| Msa0139760 | ATCG00180.1 | 87.500 | 160 | 18 | 1 | 103 | 262 | 142 | 299 | 2.75e-89 | 293 |
| Msa0139760 | ATCG00180.1 | 92.969 | 128 | 9 | 0 | 262 | 389 | 425 | 552 | 1.73e-72 | 248 |
| Msa0139760 | ATCG00190.1 | 95.122 | 82 | 4 | 0 | 1 | 82 | 990 | 1071 | 1.22e-40 | 160 |
| Msa0139760 | AT5G60040.1 | 40.741 | 108 | 61 | 1 | 273 | 380 | 449 | 553 | 3.13e-15 | 80.5 |
| Msa0139760 | AT5G60040.2 | 40.741 | 108 | 61 | 1 | 273 | 380 | 459 | 563 | 3.69e-15 | 80.5 |
| Msa0139760 | AT3G57660.2 | 31.410 | 156 | 94 | 4 | 284 | 436 | 546 | 691 | 3.97e-13 | 73.9 |
| Msa0139760 | AT3G57660.1 | 31.410 | 156 | 94 | 4 | 284 | 436 | 559 | 704 | 4.44e-13 | 73.6 |
| Msa0139760 | AT4G35800.2 | 33.094 | 139 | 85 | 3 | 242 | 380 | 419 | 549 | 3.44e-11 | 67.4 |
| Msa0139760 | AT4G35800.1 | 33.094 | 139 | 85 | 3 | 242 | 380 | 419 | 549 | 3.44e-11 | 67.4 |
| Msa0139760 | AT2G40030.1 | 35.922 | 103 | 66 | 0 | 277 | 379 | 400 | 502 | 5.38e-11 | 67.0 |
| Msa0139760 | AT2G40030.2 | 35.922 | 103 | 66 | 0 | 277 | 379 | 400 | 502 | 5.61e-11 | 67.0 |
Find 165 sgRNAs with CRISPR-Local
Find 344 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAACAACAAAGTTCTATTT+TGG | 0.177929 | 1_3:-73592144 | Msa0139760:CDS |
| TCTGGATTTAAGAATTATTA+TGG | 0.190370 | 1_3:-73593990 | Msa0139760:CDS |
| TCTGCTAATAAGTCGTTTAA+TGG | 0.223864 | 1_3:+73592316 | None:intergenic |
| ACCTCTTGTCTCCGGCTATT+GGG | 0.225839 | 1_3:-73593050 | Msa0139760:CDS |
| AAAGGGGAGATCCATCTTAT+TGG | 0.248456 | 1_3:-73594208 | Msa0139760:CDS |
| ATCCTCTCATTCCGACTAAT+TGG | 0.248879 | 1_3:+73591937 | None:intergenic |
| TGTTCATGTGCCTTTATCTT+TGG | 0.264426 | 1_3:-73593115 | Msa0139760:CDS |
| CCAACTCAAGATATGCTTAT+AGG | 0.271742 | 1_3:-73593012 | Msa0139760:CDS |
| CATTATATGGACTGGATTAA+AGG | 0.289410 | 1_3:+73591998 | None:intergenic |
| AACCTCTTGTCTCCGGCTAT+TGG | 0.290298 | 1_3:-73593051 | Msa0139760:CDS |
| GCACGTCCTTCTACTAAAAT+AGG | 0.292699 | 1_3:+73593201 | None:intergenic |
| GGATCTGCCGATTGTGTTAT+GGG | 0.297223 | 1_3:-73591483 | Msa0139760:CDS |
| TGGATCTGCCGATTGTGTTA+TGG | 0.301508 | 1_3:-73591484 | Msa0139760:CDS |
| GGGTCAGTCATCCTAAAATT+AGG | 0.301712 | 1_3:+73592020 | None:intergenic |
| AGCGCCTACTTTGCATAGAT+TGG | 0.308716 | 1_3:-73593241 | Msa0139760:CDS |
| CCTCCATCTATTTGAATAAT+CGG | 0.310599 | 1_3:+73593767 | None:intergenic |
| TTGGTAGAATGGAAAGAATT+AGG | 0.313946 | 1_3:-73593959 | Msa0139760:CDS |
| TCATGGGGACCTGGTAGAAT+TGG | 0.318933 | 1_3:-73591449 | Msa0139760:CDS |
| TTCTCGTAAATTGCTTTGAA+TGG | 0.322270 | 1_3:+73591878 | None:intergenic |
| TTTACATCCATTAGTGTGTA+AGG | 0.327520 | 1_3:-73593172 | Msa0139760:CDS |
| CAGTATCCACAACCCCTTTA+CGG | 0.329838 | 1_3:+73591814 | None:intergenic |
| AACTTTGTTGTTCAGCATCT+TGG | 0.334259 | 1_3:+73592153 | None:intergenic |
| AGAAATCAAGATATTGGAAT+TGG | 0.334567 | 1_3:-73591583 | Msa0139760:CDS |
| TACGCCAATCCATTGAAATA+TGG | 0.339395 | 1_3:-73592079 | Msa0139760:CDS |
| ATTATTGCTGGTCAATCTAT+TGG | 0.340445 | 1_3:-73591412 | Msa0139760:CDS |
| AAACTTCCTTCCTTTGAATC+TGG | 0.340714 | 1_3:+73595441 | None:intergenic |
| TCTGGAGCATCCACAGGTTT+AGG | 0.340865 | 1_3:+73595542 | None:intergenic |
| TTGAATAATCGGTCTCAATT+CGG | 0.341142 | 1_3:+73593778 | None:intergenic |
| GTCGTTAGAAATCAAGATAT+TGG | 0.341954 | 1_3:-73591589 | Msa0139760:CDS |
| ACGAGCAATCGAAAAGATTC+TGG | 0.342745 | 1_3:+73595524 | None:intergenic |
| AGACCGATTATTCAAATAGA+TGG | 0.352617 | 1_3:-73593770 | Msa0139760:CDS |
| ACTGCTACATCTATTTCATT+AGG | 0.354727 | 1_3:-73592218 | Msa0139760:CDS |
| GTACTCGGAACTACGATTAT+TGG | 0.356639 | 1_3:-73595575 | Msa0139760:CDS |
| ATCTTGAGTTGGTACGGAAA+TGG | 0.362284 | 1_3:+73593023 | None:intergenic |
| GGATACTGTATTTCCAAGAT+TGG | 0.364284 | 1_3:+73594101 | None:intergenic |
| TGAATAATCGGTCTCAATTC+GGG | 0.364643 | 1_3:+73593779 | None:intergenic |
| CGTTCGAGAACTACGATCTT+TGG | 0.364953 | 1_3:-73595504 | Msa0139760:CDS |
| CTTAATGTTAGTTGAGTTCC+CGG | 0.369671 | 1_3:+73591385 | None:intergenic |
| ATTATATGGACTGGATTAAA+GGG | 0.370361 | 1_3:+73591999 | None:intergenic |
| TGGACTAGCCATCCTTTAGA+AGG | 0.382153 | 1_3:+73592173 | None:intergenic |
| TTCCGCTAGTTAATACATAA+AGG | 0.382446 | 1_3:+73592989 | None:intergenic |
| TTGAATCCCTTACACACTAA+TGG | 0.385461 | 1_3:+73593165 | None:intergenic |
| GTTTGGGCGCTCGAGGGGTT+CGG | 0.396040 | 1_3:-73595662 | Msa0139760:CDS |
| ACGAGAACAATTAGTTGATC+TGG | 0.400881 | 1_3:-73594008 | Msa0139760:CDS |
| GGCGCTCTATTCAGCAATAC+TGG | 0.401200 | 1_3:+73593258 | None:intergenic |
| AGTATCCACAACCCCTTTAC+GGG | 0.401249 | 1_3:+73591815 | None:intergenic |
| AGACATAAAACCATCCATTC+TGG | 0.402557 | 1_3:+73593818 | None:intergenic |
| TGGATCTCCCCTTTGAAAAT+CGG | 0.405198 | 1_3:+73594217 | None:intergenic |
| TGGTCAATCTATTGGCGAAC+CGG | 0.405693 | 1_3:-73591404 | Msa0139760:CDS |
| TGGATTCTTCGTTGGTAGAA+TGG | 0.407733 | 1_3:-73593970 | Msa0139760:CDS |
| GGATTCAATGCAGACTTTGA+TGG | 0.407959 | 1_3:-73593150 | Msa0139760:CDS |
| TCATGTGCCTTTATCTTTGG+AGG | 0.409231 | 1_3:-73593112 | Msa0139760:CDS |
| CTTGCTACGGAGCCCGTAAA+GGG | 0.410011 | 1_3:-73591827 | Msa0139760:CDS |
| AGCAGATTAATAGACCATTT+CGG | 0.411046 | 1_3:-73592299 | Msa0139760:CDS |
| GCTTGAGCCTCCAAAGATAA+AGG | 0.413525 | 1_3:+73593105 | None:intergenic |
| TCGAATATGAAATCCAATCT+TGG | 0.418713 | 1_3:-73594114 | Msa0139760:CDS |
| GACGTATTCCTACAGGTAAA+GGG | 0.421613 | 1_3:+73591508 | None:intergenic |
| GATTCAATGCAGACTTTGAT+GGG | 0.425961 | 1_3:-73593149 | Msa0139760:CDS |
| TCTTGAGTTGGTACGGAAAT+GGG | 0.426083 | 1_3:+73593024 | None:intergenic |
| ATGGAGGTTTGGGCGCTCGA+GGG | 0.426714 | 1_3:-73595668 | Msa0139760:CDS |
| CTCAATTCGGGAGGAAGAAC+TGG | 0.430438 | 1_3:+73593791 | None:intergenic |
| TCTCGTAAATTGCTTTGAAT+GGG | 0.433790 | 1_3:+73591879 | None:intergenic |
| ATTCTGGTTCTATATTTGTT+CGG | 0.435196 | 1_3:+73593834 | None:intergenic |
| TCTACCAGGTCCCCATGAAT+AGG | 0.440638 | 1_3:+73591454 | None:intergenic |
| CATGGGGACCTGGTAGAATT+GGG | 0.442448 | 1_3:-73591448 | Msa0139760:CDS |
| CATACCATATTTCAATGGAT+TGG | 0.443039 | 1_3:+73592075 | None:intergenic |
| TTTGCATAGATTGGGCATAC+AGG | 0.446557 | 1_3:-73593232 | Msa0139760:CDS |
| TGTAGCATACCATATTTCAA+TGG | 0.450731 | 1_3:+73592070 | None:intergenic |
| CATACTGGTGGAGTATTCAC+AGG | 0.451249 | 1_3:-73591355 | Msa0139760:CDS |
| AATGGAGGTTTGGGCGCTCG+AGG | 0.461267 | 1_3:-73595669 | Msa0139760:CDS |
| CTGGATCAAGTAAAGACTCT+AGG | 0.462436 | 1_3:-73592254 | Msa0139760:CDS |
| CACTGACAATGAAAATGAAT+GGG | 0.463118 | 1_3:-73593924 | Msa0139760:CDS |
| CTAGAGTCTTTACTTGATCC+AGG | 0.463607 | 1_3:+73592255 | None:intergenic |
| CCACTGACAATGAAAATGAA+TGG | 0.464389 | 1_3:-73593925 | Msa0139760:CDS |
| AGACGTATTCCTACAGGTAA+AGG | 0.465006 | 1_3:+73591507 | None:intergenic |
| GGTAGGCGAAATGGAGGTTT+GGG | 0.465784 | 1_3:-73595678 | None:intergenic |
| GGGTAGGCGAAATGGAGGTT+TGG | 0.465926 | 1_3:-73595679 | None:intergenic |
| TGGAAAGAATTAGGAGAAGA+GGG | 0.467304 | 1_3:-73593950 | Msa0139760:CDS |
| GTAGCAGACGATATATATAT+CGG | 0.471989 | 1_3:-73591625 | Msa0139760:CDS |
| GCGCCTACTTTGCATAGATT+GGG | 0.476543 | 1_3:-73593240 | Msa0139760:CDS |
| TGAAGTATTTCCCATACAAT+CGG | 0.477354 | 1_3:+73593300 | None:intergenic |
| CCTCTTGTCTCCGGCTATTG+GGG | 0.480180 | 1_3:-73593049 | Msa0139760:CDS |
| AGAGAAATTTCTAGTGGAGC+AGG | 0.488408 | 1_3:-73594037 | Msa0139760:CDS |
| TCTTGCTACGGAGCCCGTAA+AGG | 0.490200 | 1_3:-73591828 | Msa0139760:CDS |
| TGGAGGGAAACTAATGAGTT+CGG | 0.494350 | 1_3:-73593750 | Msa0139760:CDS |
| GGCATATACATCACACATCC+TGG | 0.495134 | 1_3:-73592273 | Msa0139760:CDS |
| TAACAATACCTTCTAAAGGA+TGG | 0.495965 | 1_3:-73592181 | Msa0139760:CDS |
| CGAAATAGAGAAATTTCTAG+TGG | 0.496839 | 1_3:-73594043 | Msa0139760:CDS |
| AATTATTATGGATTCTTCGT+TGG | 0.499116 | 1_3:-73593978 | Msa0139760:CDS |
| GAAGCTGTAGGTATTATTGC+TGG | 0.500714 | 1_3:-73591424 | Msa0139760:CDS |
| TGGAGGTTTGGGCGCTCGAG+GGG | 0.505858 | 1_3:-73595667 | Msa0139760:CDS |
| TCATACAAACCTCTTGTCTC+CGG | 0.506883 | 1_3:-73593058 | Msa0139760:CDS |
| ATGGGCGGAGTCCTATTCAT+GGG | 0.508984 | 1_3:-73591465 | Msa0139760:CDS |
| AGGTTGCTAAGAGTAAAATA+CGG | 0.510955 | 1_3:-73593332 | Msa0139760:CDS |
| GAATGGGAAGATCGAAAAGT+AGG | 0.511851 | 1_3:-73593908 | Msa0139760:CDS |
| GACTCCGCCCATAACACAAT+CGG | 0.512450 | 1_3:+73591476 | None:intergenic |
| CCTCGTAATCGTAAGAAAGT+AGG | 0.512515 | 1_3:+73594142 | None:intergenic |
| CGGAGCCCGTAAAGGGGTTG+TGG | 0.513039 | 1_3:-73591820 | Msa0139760:CDS |
| AAATCAATCATTTGTCCTTG+TGG | 0.513235 | 1_3:+73591903 | None:intergenic |
| AGAACTACGATCTTTGGCTC+TGG | 0.513829 | 1_3:-73595498 | Msa0139760:CDS |
| ATGGAAAGAATTAGGAGAAG+AGG | 0.513927 | 1_3:-73593951 | Msa0139760:CDS |
| TAGATGTAGCAGTAGCTTGA+CGG | 0.516966 | 1_3:+73592228 | None:intergenic |
| TATGGGCGGAGTCCTATTCA+TGG | 0.517790 | 1_3:-73591466 | Msa0139760:CDS |
| ATGTATATGCCATTCCGAAA+TGG | 0.525535 | 1_3:+73592285 | None:intergenic |
| GGTCAATCTATTGGCGAACC+GGG | 0.527123 | 1_3:-73591403 | Msa0139760:CDS |
| AGACTTTGATGGGGATCAAA+TGG | 0.531054 | 1_3:-73593139 | Msa0139760:CDS |
| AAAGATTCTGGAGCATCCAC+AGG | 0.531781 | 1_3:+73595536 | None:intergenic |
| CCTATAAGCATATCTTGAGT+TGG | 0.532621 | 1_3:+73593012 | None:intergenic |
| AGAAAGACTTCCAGATTCAA+AGG | 0.533242 | 1_3:-73595451 | Msa0139760:CDS |
| TTGGATAGGATCCAATAAGA+TGG | 0.534215 | 1_3:+73594197 | None:intergenic |
| GAATATATAATTTCTTGCTA+CGG | 0.534554 | 1_3:-73591840 | Msa0139760:CDS |
| CAGCTTCTCCCAATTCTACC+AGG | 0.535523 | 1_3:+73591440 | None:intergenic |
| TGGATCAAGTAAAGACTCTA+GGG | 0.538268 | 1_3:-73592253 | Msa0139760:CDS |
| AATACTTCAAGAAGTTATGC+GGG | 0.538847 | 1_3:-73593286 | Msa0139760:CDS |
| ATATGTGCGAGCCCCTCGAA+TGG | 0.543007 | 1_3:-73591320 | Msa0139760:CDS |
| AAGCATATCTTGAGTTGGTA+CGG | 0.543078 | 1_3:+73593017 | None:intergenic |
| GATCCAAGACGTATTCCTAC+AGG | 0.544747 | 1_3:+73591501 | None:intergenic |
| CCTTTGAAAATCGGACGTGA+GGG | 0.545911 | 1_3:+73594226 | None:intergenic |
| TTACCTGTAGGAATACGTCT+TGG | 0.547868 | 1_3:-73591504 | Msa0139760:CDS |
| GAACAAATATAGAACCAGAA+TGG | 0.550621 | 1_3:-73593832 | Msa0139760:CDS |
| CCCTTTGAAAATCGGACGTG+AGG | 0.550708 | 1_3:+73594225 | None:intergenic |
| GGTTGCTAAGAGTAAAATAC+GGG | 0.557472 | 1_3:-73593331 | Msa0139760:CDS |
| CTCGGAACTACGATTATTGG+AGG | 0.559077 | 1_3:-73595572 | Msa0139760:CDS |
| AGACTTCCAGATTCAAAGGA+AGG | 0.563377 | 1_3:-73595447 | Msa0139760:CDS |
| TTACATCCATTAGTGTGTAA+GGG | 0.565613 | 1_3:-73593171 | Msa0139760:CDS |
| GGAAGTCTTTCTCAGATACA+AGG | 0.565963 | 1_3:+73595462 | None:intergenic |
| AAATATAGAACCAGAATGGA+TGG | 0.566690 | 1_3:-73593828 | Msa0139760:CDS |
| CGTGAGGGTTTCCTCTCATC+CGG | 0.572506 | 1_3:+73594241 | None:intergenic |
| GCTGTACGAACATCAGATGC+TGG | 0.573261 | 1_3:-73591792 | Msa0139760:CDS |
| TACACGTCGACTTGTTGAAG+TGG | 0.573503 | 1_3:-73591763 | Msa0139760:CDS |
| CCGATTATTCAAATAGATGG+AGG | 0.576436 | 1_3:-73593767 | Msa0139760:CDS |
| ATGCCCAATCTATGCAAAGT+AGG | 0.578492 | 1_3:+73593237 | None:intergenic |
| CACCAATTAGTCGGAATGAG+AGG | 0.580106 | 1_3:-73591939 | Msa0139760:CDS |
| GAGTCCTATTCATGGGGACC+TGG | 0.582108 | 1_3:-73591458 | Msa0139760:CDS |
| ATTAATAGACCATTTCGGAA+TGG | 0.587547 | 1_3:-73592294 | Msa0139760:CDS |
| CCTACTTTCTTACGATTACG+AGG | 0.587628 | 1_3:-73594142 | Msa0139760:CDS |
| GAAATGGGATCCCCAATAGC+CGG | 0.587924 | 1_3:+73593039 | None:intergenic |
| ACGATATATATATCGGTTCA+CGG | 0.590851 | 1_3:-73591618 | Msa0139760:CDS |
| GGCCTTTATGTATTAACTAG+CGG | 0.596927 | 1_3:-73592991 | Msa0139760:CDS |
| ATTCAAAGCAATTTACGAGA+AGG | 0.601229 | 1_3:-73591876 | Msa0139760:CDS |
| TCTCAAGTGCACCAATTAGT+CGG | 0.615181 | 1_3:-73591948 | Msa0139760:CDS |
| CCCCAATAGCCGGAGACAAG+AGG | 0.615798 | 1_3:+73593049 | None:intergenic |
| AAATACTTTAGCCGGATGAG+AGG | 0.622971 | 1_3:-73594252 | Msa0139760:intron |
| ACGTATTCCTACAGGTAAAG+GGG | 0.629974 | 1_3:+73591509 | None:intergenic |
| TTGCTACGGAGCCCGTAAAG+GGG | 0.638134 | 1_3:-73591826 | Msa0139760:CDS |
| AAATACTTCAAGAAGTTATG+CGG | 0.639489 | 1_3:-73593287 | Msa0139760:CDS |
| CGATTATTCAAATAGATGGA+GGG | 0.639639 | 1_3:-73593766 | Msa0139760:CDS |
| GTAGAATTGGGAGAAGCTGT+AGG | 0.641313 | 1_3:-73591436 | Msa0139760:CDS |
| ATACTGGTGGAGTATTCACA+GGG | 0.646983 | 1_3:-73591354 | Msa0139760:CDS |
| AGGAACAATACCTAAACCTG+TGG | 0.656849 | 1_3:-73595552 | Msa0139760:CDS |
| GTTGTACGTCGAACAGATTG+CGG | 0.659130 | 1_3:-73591729 | Msa0139760:intron |
| AAAGCTCGTCAAGAAGTACT+CGG | 0.659322 | 1_3:-73595590 | Msa0139760:CDS |
| ATTCAATGCAGACTTTGATG+GGG | 0.662689 | 1_3:-73593148 | Msa0139760:CDS |
| TGGGCGGAGTCCTATTCATG+GGG | 0.665077 | 1_3:-73591464 | Msa0139760:CDS |
| TACTTCAAGAAGTTATGCGG+GGG | 0.669171 | 1_3:-73593284 | Msa0139760:CDS |
| CGTATTCCTACAGGTAAAGG+GGG | 0.679391 | 1_3:+73591510 | None:intergenic |
| TTATATGGACTGGATTAAAG+GGG | 0.684921 | 1_3:+73592000 | None:intergenic |
| ATACTTCAAGAAGTTATGCG+GGG | 0.687954 | 1_3:-73593285 | Msa0139760:CDS |
| TCAGTATGGGAATGTACATG+CGG | 0.691247 | 1_3:-73592111 | Msa0139760:CDS |
| GGATTAATGTCAGATCCACA+AGG | 0.711466 | 1_3:-73591918 | Msa0139760:CDS |
| ATAATCGGTCTCAATTCGGG+AGG | 0.712530 | 1_3:+73593782 | None:intergenic |
| TTAACTAGCGGAAATCGTCG+AGG | 0.734048 | 1_3:-73592979 | Msa0139760:intron |
| TCTGCCGATTGTGTTATGGG+CGG | 0.746299 | 1_3:-73591480 | Msa0139760:CDS |
| ACTGGTGGAGTATTCACAGG+GGG | 0.750203 | 1_3:-73591352 | Msa0139760:CDS |
| TACTGGTGGAGTATTCACAG+GGG | 0.793942 | 1_3:-73591353 | Msa0139760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAATTTTTAATAAAAAA+AGG | + | chr1_3:73592478-73592497 | None:intergenic | 0.0% |
| !!! | TAATTTTTTTTTTTTTCACA+AGG | + | chr1_3:73592237-73592256 | None:intergenic | 10.0% |
| !!! | CTCTAAATCTAAAATAAAAA+AGG | + | chr1_3:73592658-73592677 | None:intergenic | 15.0% |
| !!! | CTTTTTTATTTTAGATTTAG+AGG | - | chr1_3:73592656-73592675 | Msa0139760:intron | 15.0% |
| !!! | TTATTTTGTGAACGAATTTT+TGG | - | chr1_3:73591751-73591770 | Msa0139760:CDS | 20.0% |
| !!! | TATTTTGTGAACGAATTTTT+GGG | - | chr1_3:73591752-73591771 | Msa0139760:CDS | 20.0% |
| !!! | TGATACATTATTCTTTGTTT+CGG | + | chr1_3:73592589-73592608 | None:intergenic | 20.0% |
| !!! | AGGTTTTCAAAAATTTGAAA+CGG | - | chr1_3:73592676-73592695 | Msa0139760:intron | 20.0% |
| !! | ACACAATAAAGATAAAGAAA+GGG | + | chr1_3:73592706-73592725 | None:intergenic | 20.0% |
| !! | TCTGGATTTAAGAATTATTA+TGG | - | chr1_3:73592990-73593009 | Msa0139760:CDS | 20.0% |
| !! | TTAGAATTTCTGCAATTAAA+CGG | + | chr1_3:73594048-73594067 | None:intergenic | 20.0% |
| !! | GTACCTATTATGAAATTTAT+GGG | - | chr1_3:73594265-73594284 | Msa0139760:intron | 20.0% |
| !! | GTAAATTTATGTTATGATAC+TGG | - | chr1_3:73594459-73594478 | Msa0139760:intron | 20.0% |
| !!! | AAGAAATGAATCCTAATTTT+AGG | - | chr1_3:73594949-73594968 | Msa0139760:intron | 20.0% |
| !! | GAATATATAATTTCTTGCTA+CGG | - | chr1_3:73595140-73595159 | Msa0139760:intron | 20.0% |
| !!! | GTTTTGTAATGAAGAGTATA+GGG | + | chr1_3:73591709-73591728 | None:intergenic | 25.0% |
| !! | CAAAATAATCCATCTTTTTC+AGG | + | chr1_3:73591739-73591758 | None:intergenic | 25.0% |
| !!! | GAGTAGAATTTATTGATTCT+CGG | - | chr1_3:73591860-73591879 | Msa0139760:CDS | 25.0% |
| !!! | AGTAGAATTTATTGATTCTC+GGG | - | chr1_3:73591861-73591880 | Msa0139760:CDS | 25.0% |
| ! | AAACCTCTTAAAGAATTAGA+AGG | - | chr1_3:73591982-73592001 | Msa0139760:CDS | 25.0% |
| ! | GTCATTCCATTCAATTAAAT+TGG | - | chr1_3:73592069-73592088 | Msa0139760:CDS | 25.0% |
| ! | GACATTCCAATTTAATTGAA+TGG | + | chr1_3:73592078-73592097 | None:intergenic | 25.0% |
| !! | TCATACCATATTGATCTTTT+AGG | + | chr1_3:73592416-73592435 | None:intergenic | 25.0% |
| ! | CACAATAAAGATAAAGAAAG+GGG | + | chr1_3:73592705-73592724 | None:intergenic | 25.0% |
| ! | CACACAATAAAGATAAAGAA+AGG | + | chr1_3:73592707-73592726 | None:intergenic | 25.0% |
| !!! | AAAGTAGGTTTTTTAACTAC+GGG | + | chr1_3:73592826-73592845 | None:intergenic | 25.0% |
| !!! | GAAAGTAGGTTTTTTAACTA+CGG | + | chr1_3:73592827-73592846 | None:intergenic | 25.0% |
| ! | AATTATTATGGATTCTTCGT+TGG | - | chr1_3:73593002-73593021 | Msa0139760:CDS | 25.0% |
| !!! | AGGAAGAAGAAAGAATTTTT+TGG | - | chr1_3:73593092-73593111 | Msa0139760:CDS | 25.0% |
| !!! | ATTCTGGTTCTATATTTGTT+CGG | + | chr1_3:73593149-73593168 | None:intergenic | 25.0% |
| ! | TCTATAGAAGAGTTATCTAT+CGG | - | chr1_3:73593265-73593284 | Msa0139760:CDS | 25.0% |
| !!! | TAGATCTACTTGTTGTTAAT+AGG | + | chr1_3:73593308-73593327 | None:intergenic | 25.0% |
| ! | AGTAATGTGTCAAGAAAAAT+TGG | - | chr1_3:73593340-73593359 | Msa0139760:intron | 25.0% |
| !! | ATCGTTTTCAGATATAATTG+AGG | - | chr1_3:73593442-73593461 | Msa0139760:intron | 25.0% |
| !! | TCGTTTTCAGATATAATTGA+GGG | - | chr1_3:73593443-73593462 | Msa0139760:intron | 25.0% |
| ! | AAATACTTCAAGAAGTTATG+CGG | - | chr1_3:73593693-73593712 | Msa0139760:intron | 25.0% |
| !!! | TTTCAACCTATTTTAGTAGA+AGG | - | chr1_3:73593773-73593792 | Msa0139760:CDS | 25.0% |
| ! | TCATAGGAATTGCAAAAAAA+GGG | + | chr1_3:73594120-73594139 | None:intergenic | 25.0% |
| ! | ATCATAGGAATTGCAAAAAA+AGG | + | chr1_3:73594121-73594140 | None:intergenic | 25.0% |
| !! | TAAATTTCGATAGTCCTTTT+TGG | - | chr1_3:73594169-73594188 | Msa0139760:CDS | 25.0% |
| ! | GGTACCTATTATGAAATTTA+TGG | - | chr1_3:73594264-73594283 | Msa0139760:intron | 25.0% |
| ! | ATGCCCATAAATTTCATAAT+AGG | + | chr1_3:73594271-73594290 | None:intergenic | 25.0% |
| ! | TGATTAGATACCATATGAAT+AGG | + | chr1_3:73594409-73594428 | None:intergenic | 25.0% |
| ! | ATGGTATCTAATCATATAGA+TGG | - | chr1_3:73594415-73594434 | Msa0139760:intron | 25.0% |
| ! | ATAACATAAATTTACCTAGC+TGG | + | chr1_3:73594454-73594473 | None:intergenic | 25.0% |
| ! | CGTGAATAAACATAAAGAAA+AGG | - | chr1_3:73594520-73594539 | Msa0139760:intron | 25.0% |
| ! | AATGAATTTGAGTCAATGAT+TGG | + | chr1_3:73594553-73594572 | None:intergenic | 25.0% |
| !! | CTTTTAACAATACCTTCTAA+AGG | - | chr1_3:73594795-73594814 | Msa0139760:intron | 25.0% |
| !! | TGAACAACAAAGTTCTATTT+TGG | - | chr1_3:73594836-73594855 | Msa0139760:intron | 25.0% |
| ! | TTGGAAAAACATAATCAGTA+TGG | - | chr1_3:73594855-73594874 | Msa0139760:intron | 25.0% |
| ! | TGGAAAAACATAATCAGTAT+GGG | - | chr1_3:73594856-73594875 | Msa0139760:intron | 25.0% |
| !!! | ATTATATGGACTGGATTAAA+GGG | + | chr1_3:73594984-73595003 | None:intergenic | 25.0% |
| ! | GTTTGTATCAAAATTCTTTC+TGG | + | chr1_3:73595320-73595339 | None:intergenic | 25.0% |
| ! | AGAAATCAAGATATTGGAAT+TGG | - | chr1_3:73595397-73595416 | Msa0139760:intron | 25.0% |
| !! | ACATTAAGAACTTTTCATAC+TGG | - | chr1_3:73595610-73595629 | Msa0139760:CDS | 25.0% |
| TCAAAGGAAGGAAGTTTAAT+TGG | - | chr1_3:73591545-73591564 | Msa0139760:CDS | 30.0% | |
| !! | GGTTTTGTAATGAAGAGTAT+AGG | + | chr1_3:73591710-73591729 | None:intergenic | 30.0% |
| !! | ATTTTTGGGCCTATAAAAAG+TGG | - | chr1_3:73591766-73591785 | Msa0139760:CDS | 30.0% |
| !! | TTTTTGGGCCTATAAAAAGT+GGG | - | chr1_3:73591767-73591786 | Msa0139760:CDS | 30.0% |
| TGTGGAAATTATCGAGTAAT+CGG | - | chr1_3:73591799-73591818 | Msa0139760:CDS | 30.0% | |
| ATTGTTCACAAAATTTGGGT+TGG | + | chr1_3:73591837-73591856 | None:intergenic | 30.0% | |
| AAAAGACTCGCAATATAACT+AGG | + | chr1_3:73591958-73591977 | None:intergenic | 30.0% | |
| AGACCTTCTAATTCTTTAAG+AGG | + | chr1_3:73591988-73592007 | None:intergenic | 30.0% | |
| TTGAATACTCCCAATCAATA+AGG | - | chr1_3:73592155-73592174 | Msa0139760:CDS | 30.0% | |
| TGAATACTCCCAATCAATAA+GGG | - | chr1_3:73592156-73592175 | Msa0139760:CDS | 30.0% | |
| TATATGCGATAGATAGACTT+CGG | + | chr1_3:73592350-73592369 | None:intergenic | 30.0% | |
| CTTGACCTAAAAGATCAATA+TGG | - | chr1_3:73592408-73592427 | Msa0139760:intron | 30.0% | |
| AGAAATCTCTTATGAATTCG+AGG | - | chr1_3:73592447-73592466 | Msa0139760:intron | 30.0% | |
| TTGTGTGTAAATACTTTAGC+CGG | - | chr1_3:73592720-73592739 | Msa0139760:intron | 30.0% | |
| AGCAAACGAAAAATTTGGAT+AGG | + | chr1_3:73592800-73592819 | None:intergenic | 30.0% | |
| ! | ATCCAAATTTTTCGTTTGCT+AGG | - | chr1_3:73592800-73592819 | Msa0139760:intron | 30.0% |
| TCGAATATGAAATCCAATCT+TGG | - | chr1_3:73592866-73592885 | Msa0139760:intron | 30.0% | |
| ! | CGAAATAGAGAAATTTCTAG+TGG | - | chr1_3:73592937-73592956 | Msa0139760:intron | 30.0% |
| TTGGTAGAATGGAAAGAATT+AGG | - | chr1_3:73593021-73593040 | Msa0139760:CDS | 30.0% | |
| CACTGACAATGAAAATGAAT+GGG | - | chr1_3:73593056-73593075 | Msa0139760:CDS | 30.0% | |
| GAACAAATATAGAACCAGAA+TGG | - | chr1_3:73593148-73593167 | Msa0139760:CDS | 30.0% | |
| AAATATAGAACCAGAATGGA+TGG | - | chr1_3:73593152-73593171 | Msa0139760:CDS | 30.0% | |
| TTGAATAATCGGTCTCAATT+CGG | + | chr1_3:73593205-73593224 | None:intergenic | 30.0% | |
| AGACCGATTATTCAAATAGA+TGG | - | chr1_3:73593210-73593229 | Msa0139760:CDS | 30.0% | |
| CCTCCATCTATTTGAATAAT+CGG | + | chr1_3:73593216-73593235 | None:intergenic | 30.0% | |
| CGATTATTCAAATAGATGGA+GGG | - | chr1_3:73593214-73593233 | Msa0139760:CDS | 30.0% | |
| !! | TGGAAAACGAGTTGATTATT+CGG | - | chr1_3:73593496-73593515 | Msa0139760:intron | 30.0% |
| TTTCAGACATTTCTAATTCG+TGG | - | chr1_3:73593595-73593614 | Msa0139760:intron | 30.0% | |
| ! | AAACATTTTGCTTCGAACAT+AGG | - | chr1_3:73593628-73593647 | Msa0139760:intron | 30.0% |
| AGGTTGCTAAGAGTAAAATA+CGG | - | chr1_3:73593648-73593667 | Msa0139760:intron | 30.0% | |
| ! | TGAAGTATTTCCCATACAAT+CGG | + | chr1_3:73593683-73593702 | None:intergenic | 30.0% |
| AATACTTCAAGAAGTTATGC+GGG | - | chr1_3:73593694-73593713 | Msa0139760:intron | 30.0% | |
| TTTACATCCATTAGTGTGTA+AGG | - | chr1_3:73593808-73593827 | Msa0139760:CDS | 30.0% | |
| TTACATCCATTAGTGTGTAA+GGG | - | chr1_3:73593809-73593828 | Msa0139760:CDS | 30.0% | |
| TTCCGCTAGTTAATACATAA+AGG | + | chr1_3:73593994-73594013 | None:intergenic | 30.0% | |
| ! | GAAGTTCACTATGAATCTTT+TGG | - | chr1_3:73594243-73594262 | Msa0139760:CDS | 30.0% |
| ATATACATTAGAACCACTGT+TGG | - | chr1_3:73594330-73594349 | Msa0139760:intron | 30.0% | |
| AAAAGAAATATGACCAACAG+TGG | + | chr1_3:73594346-73594365 | None:intergenic | 30.0% | |
| GAAATTGAAGAAGCTATACA+AGG | - | chr1_3:73594372-73594391 | Msa0139760:intron | 30.0% | |
| GTTATTGTGAAAGACTAGAT+TGG | + | chr1_3:73594628-73594647 | None:intergenic | 30.0% | |
| TCTGCTAATAAGTCGTTTAA+TGG | + | chr1_3:73594667-73594686 | None:intergenic | 30.0% | |
| AGCAGATTAATAGACCATTT+CGG | - | chr1_3:73594681-73594700 | Msa0139760:intron | 30.0% | |
| ATTAATAGACCATTTCGGAA+TGG | - | chr1_3:73594686-73594705 | Msa0139760:intron | 30.0% | |
| ACTGCTACATCTATTTCATT+AGG | - | chr1_3:73594762-73594781 | Msa0139760:intron | 30.0% | |
| ! | TAACAATACCTTCTAAAGGA+TGG | - | chr1_3:73594799-73594818 | Msa0139760:intron | 30.0% |
| CATACCATATTTCAATGGAT+TGG | + | chr1_3:73594908-73594927 | None:intergenic | 30.0% | |
| TGTAGCATACCATATTTCAA+TGG | + | chr1_3:73594913-73594932 | None:intergenic | 30.0% | |
| !! | TTATATGGACTGGATTAAAG+GGG | + | chr1_3:73594983-73595002 | None:intergenic | 30.0% |
| !! | CATTATATGGACTGGATTAA+AGG | + | chr1_3:73594985-73595004 | None:intergenic | 30.0% |
| GAAAAAGACATTATATGGAC+TGG | + | chr1_3:73594993-73595012 | None:intergenic | 30.0% | |
| ! | GTCCATATAATGTCTTTTTC+AGG | - | chr1_3:73594993-73595012 | Msa0139760:intron | 30.0% |
| CTCCTGAAAAAGACATTATA+TGG | + | chr1_3:73594998-73595017 | None:intergenic | 30.0% | |
| AAATCAATCATTTGTCCTTG+TGG | + | chr1_3:73595080-73595099 | None:intergenic | 30.0% | |
| ! | TCTCGTAAATTGCTTTGAAT+GGG | + | chr1_3:73595104-73595123 | None:intergenic | 30.0% |
| ! | TTCTCGTAAATTGCTTTGAA+TGG | + | chr1_3:73595105-73595124 | None:intergenic | 30.0% |
| ATTCAAAGCAATTTACGAGA+AGG | - | chr1_3:73595104-73595123 | Msa0139760:intron | 30.0% | |
| ATTTCTGTAAATACCCGAAA+TGG | - | chr1_3:73595287-73595306 | Msa0139760:intron | 30.0% | |
| ! | TTTCTGGTATCATTCCATTT+CGG | + | chr1_3:73595304-73595323 | None:intergenic | 30.0% |
| GTAGCAGACGATATATATAT+CGG | - | chr1_3:73595355-73595374 | Msa0139760:intron | 30.0% | |
| !! | ACGATATATATATCGGTTCA+CGG | - | chr1_3:73595362-73595381 | Msa0139760:intron | 30.0% |
| GTCGTTAGAAATCAAGATAT+TGG | - | chr1_3:73595391-73595410 | Msa0139760:intron | 30.0% | |
| ATTATTGCTGGTCAATCTAT+TGG | - | chr1_3:73595568-73595587 | Msa0139760:CDS | 30.0% | |
| ! | TTAAGAACTTTTCATACTGG+TGG | - | chr1_3:73595613-73595632 | Msa0139760:CDS | 30.0% |
| AGAAAGACTTCCAGATTCAA+AGG | - | chr1_3:73591529-73591548 | Msa0139760:CDS | 35.0% | |
| AAACTTCCTTCCTTTGAATC+TGG | + | chr1_3:73591542-73591561 | None:intergenic | 35.0% | |
| AAACATCAACACCTTCGAAT+TGG | - | chr1_3:73591605-73591624 | Msa0139760:CDS | 35.0% | |
| AGAAAACTGATCCAATTCGA+AGG | + | chr1_3:73591619-73591638 | None:intergenic | 35.0% | |
| TCCTGAACAAATAAGTGCTT+GGG | - | chr1_3:73591638-73591657 | Msa0139760:intron | 35.0% | |
| GGCAAAAAAATCCTACCTAA+TGG | - | chr1_3:73591659-73591678 | Msa0139760:intron | 35.0% | |
| CAACAATTTCTCCATTAGGT+AGG | + | chr1_3:73591673-73591692 | None:intergenic | 35.0% | |
| CTACCTAATGGAGAAATTGT+TGG | - | chr1_3:73591671-73591690 | Msa0139760:intron | 35.0% | |
| TCTCCAACAATTTCTCCATT+AGG | + | chr1_3:73591677-73591696 | None:intergenic | 35.0% | |
| TAATGGAGAAATTGTTGGAG+AGG | - | chr1_3:73591676-73591695 | Msa0139760:intron | 35.0% | |
| ACCAATAAGCCTGAAAAAGA+TGG | - | chr1_3:73591727-73591746 | Msa0139760:intron | 35.0% | |
| !!! | TCCATCTTTTTCAGGCTTAT+TGG | + | chr1_3:73591731-73591750 | None:intergenic | 35.0% |
| !!! | GCACAAATCCCACTTTTTAT+AGG | + | chr1_3:73591778-73591797 | None:intergenic | 35.0% |
| CCGCATTGTTCACAAAATTT+GGG | + | chr1_3:73591841-73591860 | None:intergenic | 35.0% | |
| ! | CCCAAATTTTGTGAACAATG+CGG | - | chr1_3:73591838-73591857 | Msa0139760:CDS | 35.0% |
| TCCGCATTGTTCACAAAATT+TGG | + | chr1_3:73591842-73591861 | None:intergenic | 35.0% | |
| ACGTTTCAAATACCACACAT+GGG | + | chr1_3:73591932-73591951 | None:intergenic | 35.0% | |
| AACATGAAGCTCAGAATTCA+TGG | - | chr1_3:73592127-73592146 | Msa0139760:CDS | 35.0% | |
| ACATGAAGCTCAGAATTCAT+GGG | - | chr1_3:73592128-73592147 | Msa0139760:CDS | 35.0% | |
| ! | GACCAATTCCCTTATTGATT+GGG | + | chr1_3:73592167-73592186 | None:intergenic | 35.0% |
| AGACCAATTCCCTTATTGAT+TGG | + | chr1_3:73592168-73592187 | None:intergenic | 35.0% | |
| ! | TCAATAAGGGAATTGGTCTA+TGG | - | chr1_3:73592169-73592188 | Msa0139760:CDS | 35.0% |
| GAAGTCTATCTATCGCATAT+AGG | - | chr1_3:73592349-73592368 | Msa0139760:intron | 35.0% | |
| ATATAGGCTTAAAGACATCG+TGG | - | chr1_3:73592365-73592384 | Msa0139760:intron | 35.0% | |
| TTGGATAGGATCCAATAAGA+TGG | + | chr1_3:73592786-73592805 | None:intergenic | 35.0% | |
| GGATACTGTATTTCCAAGAT+TGG | + | chr1_3:73592882-73592901 | None:intergenic | 35.0% | |
| CTTGAGTAGCAAAAAAGAGT+GGG | + | chr1_3:73592903-73592922 | None:intergenic | 35.0% | |
| ACGAGAACAATTAGTTGATC+TGG | - | chr1_3:73592972-73592991 | Msa0139760:intron | 35.0% | |
| ATGGAAAGAATTAGGAGAAG+AGG | - | chr1_3:73593029-73593048 | Msa0139760:CDS | 35.0% | |
| TGGAAAGAATTAGGAGAAGA+GGG | - | chr1_3:73593030-73593049 | Msa0139760:CDS | 35.0% | |
| ! | CCATTCATTTTCATTGTCAG+TGG | + | chr1_3:73593058-73593077 | None:intergenic | 35.0% |
| CCACTGACAATGAAAATGAA+TGG | - | chr1_3:73593055-73593074 | Msa0139760:CDS | 35.0% | |
| AGACATAAAACCATCCATTC+TGG | + | chr1_3:73593165-73593184 | None:intergenic | 35.0% | |
| TGAATAATCGGTCTCAATTC+GGG | + | chr1_3:73593204-73593223 | None:intergenic | 35.0% | |
| CCGATTATTCAAATAGATGG+AGG | - | chr1_3:73593213-73593232 | Msa0139760:CDS | 35.0% | |
| TTGACACATTACTAATTCCC+TGG | + | chr1_3:73593333-73593352 | None:intergenic | 35.0% | |
| ! | ATTATCAAGGAGTGTATCCA+CGG | + | chr1_3:73593375-73593394 | None:intergenic | 35.0% |
| AGATATAATTGAGGGCAAAG+AGG | - | chr1_3:73593451-73593470 | Msa0139760:intron | 35.0% | |
| GATATAATTGAGGGCAAAGA+GGG | - | chr1_3:73593452-73593471 | Msa0139760:intron | 35.0% | |
| !! | GGAAAACGAGTTGATTATTC+GGG | - | chr1_3:73593497-73593516 | Msa0139760:intron | 35.0% |
| CATCGATGTAATGAAAGTGA+TGG | + | chr1_3:73593544-73593563 | None:intergenic | 35.0% | |
| TCACTTTCATTACATCGATG+TGG | - | chr1_3:73593544-73593563 | Msa0139760:intron | 35.0% | |
| !! | ATAGCTCTATTGCTATTTCG+CGG | + | chr1_3:73593576-73593595 | None:intergenic | 35.0% |
| GGTTGCTAAGAGTAAAATAC+GGG | - | chr1_3:73593649-73593668 | Msa0139760:intron | 35.0% | |
| GGAAAAAGAACCGATTGTAT+GGG | - | chr1_3:73593670-73593689 | Msa0139760:intron | 35.0% | |
| ATACTTCAAGAAGTTATGCG+GGG | - | chr1_3:73593695-73593714 | Msa0139760:intron | 35.0% | |
| TTGAATCCCTTACACACTAA+TGG | + | chr1_3:73593818-73593837 | None:intergenic | 35.0% | |
| GATTCAATGCAGACTTTGAT+GGG | - | chr1_3:73593831-73593850 | Msa0139760:CDS | 35.0% | |
| ATTCAATGCAGACTTTGATG+GGG | - | chr1_3:73593832-73593851 | Msa0139760:CDS | 35.0% | |
| TGTTCATGTGCCTTTATCTT+TGG | - | chr1_3:73593865-73593884 | Msa0139760:CDS | 35.0% | |
| !! | AAGCATATCTTGAGTTGGTA+CGG | + | chr1_3:73593966-73593985 | None:intergenic | 35.0% |
| CCTATAAGCATATCTTGAGT+TGG | + | chr1_3:73593971-73593990 | None:intergenic | 35.0% | |
| CCAACTCAAGATATGCTTAT+AGG | - | chr1_3:73593968-73593987 | Msa0139760:CDS | 35.0% | |
| GGCCTTTATGTATTAACTAG+CGG | - | chr1_3:73593989-73594008 | Msa0139760:CDS | 35.0% | |
| TGCAATTCCTATGATGCAAT+TGG | - | chr1_3:73594126-73594145 | Msa0139760:CDS | 35.0% | |
| ATAAGCTCCAATTGCATCAT+AGG | + | chr1_3:73594136-73594155 | None:intergenic | 35.0% | |
| GATTCATAGTGAACTTCGAT+AGG | + | chr1_3:73594240-73594259 | None:intergenic | 35.0% | |
| ! | TTTTCTCGAGCCTATTCATA+TGG | - | chr1_3:73594396-73594415 | Msa0139760:intron | 35.0% |
| TATGATACTGGCGTAAATTC+AGG | - | chr1_3:73594471-73594490 | Msa0139760:intron | 35.0% | |
| GTCTTTCACAATAACGTGAT+AGG | - | chr1_3:73594633-73594652 | Msa0139760:intron | 35.0% | |
| TTTCACAATAACGTGATAGG+TGG | - | chr1_3:73594636-73594655 | Msa0139760:intron | 35.0% | |
| ATGTATATGCCATTCCGAAA+TGG | + | chr1_3:73594698-73594717 | None:intergenic | 35.0% | |
| TGGATCAAGTAAAGACTCTA+GGG | - | chr1_3:73594727-73594746 | Msa0139760:intron | 35.0% | |
| !! | AACTTTGTTGTTCAGCATCT+TGG | + | chr1_3:73594830-73594849 | None:intergenic | 35.0% |
| TACGCCAATCCATTGAAATA+TGG | - | chr1_3:73594901-73594920 | Msa0139760:intron | 35.0% | |
| TTCTGGTATCATTCCATTTC+GGG | + | chr1_3:73595303-73595322 | None:intergenic | 35.0% | |
| AAGGGGGTTCGAATAAATAT+TGG | + | chr1_3:73595457-73595476 | None:intergenic | 35.0% | |
| CTTAATGTTAGTTGAGTTCC+CGG | + | chr1_3:73595598-73595617 | None:intergenic | 35.0% | |
| !! | AAAGCTCGTCAAGAAGTACT+CGG | - | chr1_3:73591390-73591409 | Msa0139760:CDS | 40.0% |
| GTACTCGGAACTACGATTAT+TGG | - | chr1_3:73591405-73591424 | Msa0139760:CDS | 40.0% | |
| AGGAACAATACCTAAACCTG+TGG | - | chr1_3:73591428-73591447 | Msa0139760:CDS | 40.0% | |
| ACGAGCAATCGAAAAGATTC+TGG | + | chr1_3:73591459-73591478 | None:intergenic | 40.0% | |
| GGAAGTCTTTCTCAGATACA+AGG | + | chr1_3:73591521-73591540 | None:intergenic | 40.0% | |
| AGACTTCCAGATTCAAAGGA+AGG | - | chr1_3:73591533-73591552 | Msa0139760:CDS | 40.0% | |
| CTCCTGAACAAATAAGTGCT+TGG | - | chr1_3:73591637-73591656 | Msa0139760:intron | 40.0% | |
| AAAAGTGGGATTTGTGCTTG+TGG | - | chr1_3:73591781-73591800 | Msa0139760:CDS | 40.0% | |
| TCGGGTACGTAGATATCAAA+TGG | - | chr1_3:73591879-73591898 | Msa0139760:CDS | 40.0% | |
| CGGGTACGTAGATATCAAAT+GGG | - | chr1_3:73591880-73591899 | Msa0139760:CDS | 40.0% | |
| GGGTACGTAGATATCAAATG+GGG | - | chr1_3:73591881-73591900 | Msa0139760:CDS | 40.0% | |
| ! | AAATACCACACATGGGTTAC+TGG | + | chr1_3:73591925-73591944 | None:intergenic | 40.0% |
| GACGTTTCAAATACCACACA+TGG | + | chr1_3:73591933-73591952 | None:intergenic | 40.0% | |
| CTCTATCTGACATGTCTCTT+GGG | - | chr1_3:73592098-73592117 | Msa0139760:CDS | 40.0% | |
| CTCCCAATCAATAAGGGAAT+TGG | - | chr1_3:73592162-73592181 | Msa0139760:CDS | 40.0% | |
| TTAGAGGATTCTTCGTTCGA+AGG | - | chr1_3:73592499-73592518 | Msa0139760:intron | 40.0% | |
| TAGAGGATTCTTCGTTCGAA+GGG | - | chr1_3:73592500-73592519 | Msa0139760:intron | 40.0% | |
| AAATACTTTAGCCGGATGAG+AGG | - | chr1_3:73592728-73592747 | Msa0139760:intron | 40.0% | |
| ! | TGGATCTCCCCTTTGAAAAT+CGG | + | chr1_3:73592766-73592785 | None:intergenic | 40.0% |
| AAAGGGGAGATCCATCTTAT+TGG | - | chr1_3:73592772-73592791 | Msa0139760:intron | 40.0% | |
| GGCCTAGCAAACGAAAAATT+TGG | + | chr1_3:73592805-73592824 | None:intergenic | 40.0% | |
| CCTCGTAATCGTAAGAAAGT+AGG | + | chr1_3:73592841-73592860 | None:intergenic | 40.0% | |
| CCTACTTTCTTACGATTACG+AGG | - | chr1_3:73592838-73592857 | Msa0139760:intron | 40.0% | |
| CCTTGAGTAGCAAAAAAGAG+TGG | + | chr1_3:73592904-73592923 | None:intergenic | 40.0% | |
| !!! | CCACTCTTTTTTGCTACTCA+AGG | - | chr1_3:73592901-73592920 | Msa0139760:intron | 40.0% |
| !! | AGAGAAATTTCTAGTGGAGC+AGG | - | chr1_3:73592943-73592962 | Msa0139760:intron | 40.0% |
| ! | TGGATTCTTCGTTGGTAGAA+TGG | - | chr1_3:73593010-73593029 | Msa0139760:CDS | 40.0% |
| GAATGGGAAGATCGAAAAGT+AGG | - | chr1_3:73593072-73593091 | Msa0139760:CDS | 40.0% | |
| !!! | GAATTTTTTGGTTCGACGCA+TGG | - | chr1_3:73593104-73593123 | Msa0139760:CDS | 40.0% |
| TGGAGGGAAACTAATGAGTT+CGG | - | chr1_3:73593230-73593249 | Msa0139760:CDS | 40.0% | |
| ACAACAAGTAGATCTACACC+AGG | - | chr1_3:73593312-73593331 | Msa0139760:CDS | 40.0% | |
| CAACAAGTAGATCTACACCA+GGG | - | chr1_3:73593313-73593332 | Msa0139760:CDS | 40.0% | |
| AAAATTGGTACAAGAAGCCG+TGG | - | chr1_3:73593355-73593374 | Msa0139760:intron | 40.0% | |
| GTGGATACACTCCTTGATAA+TGG | - | chr1_3:73593374-73593393 | Msa0139760:intron | 40.0% | |
| TTATTATGACCGTCCCTCAT+TGG | + | chr1_3:73593413-73593432 | None:intergenic | 40.0% | |
| !! | TAGCTCTATTGCTATTTCGC+GGG | + | chr1_3:73593575-73593594 | None:intergenic | 40.0% |
| GGGAAAAAGAACCGATTGTA+TGG | - | chr1_3:73593669-73593688 | Msa0139760:intron | 40.0% | |
| TACTTCAAGAAGTTATGCGG+GGG | - | chr1_3:73593696-73593715 | Msa0139760:intron | 40.0% | |
| ATGCCCAATCTATGCAAAGT+AGG | + | chr1_3:73593746-73593765 | None:intergenic | 40.0% | |
| TTTGCATAGATTGGGCATAC+AGG | - | chr1_3:73593748-73593767 | Msa0139760:CDS | 40.0% | |
| GCACGTCCTTCTACTAAAAT+AGG | + | chr1_3:73593782-73593801 | None:intergenic | 40.0% | |
| GGATTCAATGCAGACTTTGA+TGG | - | chr1_3:73593830-73593849 | Msa0139760:CDS | 40.0% | |
| AGACTTTGATGGGGATCAAA+TGG | - | chr1_3:73593841-73593860 | Msa0139760:CDS | 40.0% | |
| TCATGTGCCTTTATCTTTGG+AGG | - | chr1_3:73593868-73593887 | Msa0139760:CDS | 40.0% | |
| TCATACAAACCTCTTGTCTC+CGG | - | chr1_3:73593922-73593941 | Msa0139760:CDS | 40.0% | |
| !! | TCTTGAGTTGGTACGGAAAT+GGG | + | chr1_3:73593959-73593978 | None:intergenic | 40.0% |
| !! | ATCTTGAGTTGGTACGGAAA+TGG | + | chr1_3:73593960-73593979 | None:intergenic | 40.0% |
| !! | GTTAGTGTTGATATCCAGCT+AGG | - | chr1_3:73594437-73594456 | Msa0139760:intron | 40.0% |
| ATATTCCACTCAGTGGGATT+CGG | + | chr1_3:73594582-73594601 | None:intergenic | 40.0% | |
| !! | GTGGAATATGGAGGTACTTA+TGG | - | chr1_3:73594593-73594612 | Msa0139760:intron | 40.0% |
| CTAGAGTCTTTACTTGATCC+AGG | + | chr1_3:73594728-73594747 | None:intergenic | 40.0% | |
| CTGGATCAAGTAAAGACTCT+AGG | - | chr1_3:73594726-73594745 | Msa0139760:intron | 40.0% | |
| TAGATGTAGCAGTAGCTTGA+CGG | + | chr1_3:73594755-73594774 | None:intergenic | 40.0% | |
| TCAGTATGGGAATGTACATG+CGG | - | chr1_3:73594869-73594888 | Msa0139760:intron | 40.0% | |
| GGGTCAGTCATCCTAAAATT+AGG | + | chr1_3:73594963-73594982 | None:intergenic | 40.0% | |
| !!! | ATGTCTTTTTCAGGAGCTAG+AGG | - | chr1_3:73595002-73595021 | Msa0139760:intron | 40.0% |
| TCTCAAGTGCACCAATTAGT+CGG | - | chr1_3:73595032-73595051 | Msa0139760:intron | 40.0% | |
| ATCCTCTCATTCCGACTAAT+TGG | + | chr1_3:73595046-73595065 | None:intergenic | 40.0% | |
| GGATTAATGTCAGATCCACA+AGG | - | chr1_3:73595062-73595081 | Msa0139760:intron | 40.0% | |
| ACGTATTCCTACAGGTAAAG+GGG | + | chr1_3:73595474-73595493 | None:intergenic | 40.0% | |
| GACGTATTCCTACAGGTAAA+GGG | + | chr1_3:73595475-73595494 | None:intergenic | 40.0% | |
| AGACGTATTCCTACAGGTAA+AGG | + | chr1_3:73595476-73595495 | None:intergenic | 40.0% | |
| TTACCTGTAGGAATACGTCT+TGG | - | chr1_3:73595476-73595495 | Msa0139760:CDS | 40.0% | |
| GAAGCTGTAGGTATTATTGC+TGG | - | chr1_3:73595556-73595575 | Msa0139760:CDS | 40.0% | |
| ! | ATACTGGTGGAGTATTCACA+GGG | - | chr1_3:73595626-73595645 | Msa0139760:CDS | 40.0% |
| CTCGGAACTACGATTATTGG+AGG | - | chr1_3:73591408-73591427 | Msa0139760:CDS | 45.0% | |
| !! | AAAGATTCTGGAGCATCCAC+AGG | + | chr1_3:73591447-73591466 | None:intergenic | 45.0% |
| CGTTCGAGAACTACGATCTT+TGG | - | chr1_3:73591476-73591495 | Msa0139760:CDS | 45.0% | |
| ! | AGAACTACGATCTTTGGCTC+TGG | - | chr1_3:73591482-73591501 | Msa0139760:CDS | 45.0% |
| GCCCAAGCACTTATTTGTTC+AGG | + | chr1_3:73591642-73591661 | None:intergenic | 45.0% | |
| CCAAGAGACATGTCAGATAG+AGG | + | chr1_3:73592100-73592119 | None:intergenic | 45.0% | |
| CCTCTATCTGACATGTCTCT+TGG | - | chr1_3:73592097-73592116 | Msa0139760:CDS | 45.0% | |
| ! | CCTTTGAAAATCGGACGTGA+GGG | + | chr1_3:73592757-73592776 | None:intergenic | 45.0% |
| ! | CCTCACGTCCGATTTTCAAA+GGG | - | chr1_3:73592755-73592774 | Msa0139760:intron | 45.0% |
| ! | CTCACGTCCGATTTTCAAAG+GGG | - | chr1_3:73592756-73592775 | Msa0139760:intron | 45.0% |
| ATAATCGGTCTCAATTCGGG+AGG | + | chr1_3:73593201-73593220 | None:intergenic | 45.0% | |
| !! | CTCCTTGATAATGGAATCCG+CGG | - | chr1_3:73593383-73593402 | Msa0139760:intron | 45.0% |
| AGATTTCGAGAGACTCTGCT+TGG | - | chr1_3:73593476-73593495 | Msa0139760:intron | 45.0% | |
| !! | AGCTCTATTGCTATTTCGCG+GGG | + | chr1_3:73593574-73593593 | None:intergenic | 45.0% |
| AGCGCCTACTTTGCATAGAT+TGG | - | chr1_3:73593739-73593758 | Msa0139760:CDS | 45.0% | |
| GCGCCTACTTTGCATAGATT+GGG | - | chr1_3:73593740-73593759 | Msa0139760:CDS | 45.0% | |
| GCTTGAGCCTCCAAAGATAA+AGG | + | chr1_3:73593878-73593897 | None:intergenic | 45.0% | |
| TTAACTAGCGGAAATCGTCG+AGG | - | chr1_3:73594001-73594020 | Msa0139760:CDS | 45.0% | |
| ! | GTCGAGGTATTTGTGCAAAC+AGG | - | chr1_3:73594017-73594036 | Msa0139760:CDS | 45.0% |
| !!! | TCGATAGTCCTTTTTGGCTC+CGG | - | chr1_3:73594175-73594194 | Msa0139760:CDS | 45.0% |
| ! | TGCATTGATCTATTCGCCAC+CGG | + | chr1_3:73594197-73594216 | None:intergenic | 45.0% |
| GAATCCCACTGAGTGGAATA+TGG | - | chr1_3:73594581-73594600 | Msa0139760:intron | 45.0% | |
| ACCTCCATATTCCACTCAGT+GGG | + | chr1_3:73594588-73594607 | None:intergenic | 45.0% | |
| TACCTCCATATTCCACTCAG+TGG | + | chr1_3:73594589-73594608 | None:intergenic | 45.0% | |
| !! | TGGAGGTACTTATGGCAGAA+CGG | - | chr1_3:73594601-73594620 | Msa0139760:intron | 45.0% |
| GGCATATACATCACACATCC+TGG | - | chr1_3:73594707-73594726 | Msa0139760:intron | 45.0% | |
| !! | TGGACTAGCCATCCTTTAGA+AGG | + | chr1_3:73594810-73594829 | None:intergenic | 45.0% |
| CACCAATTAGTCGGAATGAG+AGG | - | chr1_3:73595041-73595060 | Msa0139760:intron | 45.0% | |
| AGTATCCACAACCCCTTTAC+GGG | + | chr1_3:73595168-73595187 | None:intergenic | 45.0% | |
| CAGTATCCACAACCCCTTTA+CGG | + | chr1_3:73595169-73595188 | None:intergenic | 45.0% | |
| !! | TACACGTCGACTTGTTGAAG+TGG | - | chr1_3:73595217-73595236 | Msa0139760:intron | 45.0% |
| GTTGTACGTCGAACAGATTG+CGG | - | chr1_3:73595251-73595270 | Msa0139760:intron | 45.0% | |
| CGTATTCCTACAGGTAAAGG+GGG | + | chr1_3:73595473-73595492 | None:intergenic | 45.0% | |
| GATCCAAGACGTATTCCTAC+AGG | + | chr1_3:73595482-73595501 | None:intergenic | 45.0% | |
| ! | TGGATCTGCCGATTGTGTTA+TGG | - | chr1_3:73595496-73595515 | Msa0139760:CDS | 45.0% |
| ! | GGATCTGCCGATTGTGTTAT+GGG | - | chr1_3:73595497-73595516 | Msa0139760:CDS | 45.0% |
| GTAGAATTGGGAGAAGCTGT+AGG | - | chr1_3:73595544-73595563 | Msa0139760:CDS | 45.0% | |
| TGGTCAATCTATTGGCGAAC+CGG | - | chr1_3:73595576-73595595 | Msa0139760:CDS | 45.0% | |
| ! | CATACTGGTGGAGTATTCAC+AGG | - | chr1_3:73595625-73595644 | Msa0139760:CDS | 45.0% |
| ! | TACTGGTGGAGTATTCACAG+GGG | - | chr1_3:73595627-73595646 | Msa0139760:CDS | 45.0% |
| !!! | AAAAAAAATTATTTTTTTTG+TGG | - | chr1_3:73592246-73592265 | Msa0139760:CDS | 5.0% |
| !!! | TATTAAAAATTTTATTTTAG+AGG | - | chr1_3:73592483-73592502 | Msa0139760:intron | 5.0% |
| ! | TCTGGAGCATCCACAGGTTT+AGG | + | chr1_3:73591441-73591460 | None:intergenic | 50.0% |
| CATGTCCAGTAACCCATGTG+TGG | - | chr1_3:73591917-73591936 | Msa0139760:CDS | 50.0% | |
| AGGATTCTTCGTTCGAAGGG+AGG | - | chr1_3:73592503-73592522 | Msa0139760:intron | 50.0% | |
| ! | CCCTCACGTCCGATTTTCAA+AGG | - | chr1_3:73592754-73592773 | Msa0139760:intron | 50.0% |
| ! | CCCTTTGAAAATCGGACGTG+AGG | + | chr1_3:73592758-73592777 | None:intergenic | 50.0% |
| CTCAATTCGGGAGGAAGAAC+TGG | + | chr1_3:73593192-73593211 | None:intergenic | 50.0% | |
| GTCCGCGGATTCCATTATCA+AGG | + | chr1_3:73593388-73593407 | None:intergenic | 50.0% | |
| AATCCGCGGACAACCAATGA+GGG | - | chr1_3:73593397-73593416 | Msa0139760:intron | 50.0% | |
| GGGCGTTCTGTTATTGTCGT+AGG | - | chr1_3:73593517-73593536 | Msa0139760:intron | 50.0% | |
| GGCGCTCTATTCAGCAATAC+TGG | + | chr1_3:73593725-73593744 | None:intergenic | 50.0% | |
| AACCTCTTGTCTCCGGCTAT+TGG | - | chr1_3:73593929-73593948 | Msa0139760:CDS | 50.0% | |
| ACCTCTTGTCTCCGGCTATT+GGG | - | chr1_3:73593930-73593949 | Msa0139760:CDS | 50.0% | |
| GAAATGGGATCCCCAATAGC+CGG | + | chr1_3:73593944-73593963 | None:intergenic | 50.0% | |
| !!! | ATAGTCCTTTTTGGCTCCGG+TGG | - | chr1_3:73594178-73594197 | Msa0139760:CDS | 50.0% |
| TCCCACTGAGTGGAATATGG+AGG | - | chr1_3:73594584-73594603 | Msa0139760:intron | 50.0% | |
| !! | GGAGGTACTTATGGCAGAAC+GGG | - | chr1_3:73594602-73594621 | Msa0139760:intron | 50.0% |
| GCTGTACGAACATCAGATGC+TGG | - | chr1_3:73595188-73595207 | Msa0139760:intron | 50.0% | |
| ACAGATTGCGGTACGATTCG+CGG | - | chr1_3:73595263-73595282 | Msa0139760:intron | 50.0% | |
| TTCGAACCCCCTTTACCTGT+AGG | - | chr1_3:73595464-73595483 | Msa0139760:CDS | 50.0% | |
| ! | TCTGCCGATTGTGTTATGGG+CGG | - | chr1_3:73595500-73595519 | Msa0139760:CDS | 50.0% |
| GACTCCGCCCATAACACAAT+CGG | + | chr1_3:73595507-73595526 | None:intergenic | 50.0% | |
| TATGGGCGGAGTCCTATTCA+TGG | - | chr1_3:73595514-73595533 | Msa0139760:CDS | 50.0% | |
| ATGGGCGGAGTCCTATTCAT+GGG | - | chr1_3:73595515-73595534 | Msa0139760:CDS | 50.0% | |
| TCTACCAGGTCCCCATGAAT+AGG | + | chr1_3:73595529-73595548 | None:intergenic | 50.0% | |
| TCATGGGGACCTGGTAGAAT+TGG | - | chr1_3:73595531-73595550 | Msa0139760:CDS | 50.0% | |
| CATGGGGACCTGGTAGAATT+GGG | - | chr1_3:73595532-73595551 | Msa0139760:CDS | 50.0% | |
| CAGCTTCTCCCAATTCTACC+AGG | + | chr1_3:73595543-73595562 | None:intergenic | 50.0% | |
| GGTCAATCTATTGGCGAACC+GGG | - | chr1_3:73595577-73595596 | Msa0139760:CDS | 50.0% | |
| ! | ACTGGTGGAGTATTCACAGG+GGG | - | chr1_3:73595628-73595647 | Msa0139760:CDS | 50.0% |
| !! | AGTATTCACAGGGGGTACTG+CGG | - | chr1_3:73595636-73595655 | Msa0139760:CDS | 50.0% |
| ACATCGTGGCATAACCGTCG+AGG | - | chr1_3:73592379-73592398 | Msa0139760:intron | 55.0% | |
| AGGTCAAGACGTCACCTCGA+CGG | + | chr1_3:73592396-73592415 | None:intergenic | 55.0% | |
| CGTGAGGGTTTCCTCTCATC+CGG | + | chr1_3:73592742-73592761 | None:intergenic | 55.0% | |
| GAATCCGCGGACAACCAATG+AGG | - | chr1_3:73593396-73593415 | Msa0139760:intron | 55.0% | |
| CCTCTTGTCTCCGGCTATTG+GGG | - | chr1_3:73593931-73593950 | Msa0139760:CDS | 55.0% | |
| ATTCGCCACCGGAGCCAAAA+AGG | + | chr1_3:73594186-73594205 | None:intergenic | 55.0% | |
| TCGAACCGAATCCCACTGAG+TGG | - | chr1_3:73594574-73594593 | Msa0139760:intron | 55.0% | |
| TCTTGCTACGGAGCCCGTAA+AGG | - | chr1_3:73595152-73595171 | Msa0139760:intron | 55.0% | |
| CTTGCTACGGAGCCCGTAAA+GGG | - | chr1_3:73595153-73595172 | Msa0139760:intron | 55.0% | |
| TTGCTACGGAGCCCGTAAAG+GGG | - | chr1_3:73595154-73595173 | Msa0139760:intron | 55.0% | |
| CAGATTGCGGTACGATTCGC+GGG | - | chr1_3:73595264-73595283 | Msa0139760:intron | 55.0% | |
| TGGGCGGAGTCCTATTCATG+GGG | - | chr1_3:73595516-73595535 | Msa0139760:CDS | 55.0% | |
| GAGTCCTATTCATGGGGACC+TGG | - | chr1_3:73595522-73595541 | Msa0139760:CDS | 55.0% | |
| ATATGTGCGAGCCCCTCGAA+TGG | - | chr1_3:73595660-73595679 | Msa0139760:CDS | 55.0% | |
| ATGGAGGTTTGGGCGCTCGA+GGG | - | chr1_3:73591312-73591331 | Msa0139760:CDS | 60.0% | |
| ! | CGTCCCTCATTGGTTGTCCG+CGG | + | chr1_3:73593403-73593422 | None:intergenic | 60.0% |
| CGCGGACAACCAATGAGGGA+CGG | - | chr1_3:73593401-73593420 | Msa0139760:intron | 60.0% | |
| CCCCAATAGCCGGAGACAAG+AGG | + | chr1_3:73593934-73593953 | None:intergenic | 60.0% | |
| TGGAGGTTTGGGCGCTCGAG+GGG | - | chr1_3:73591313-73591332 | Msa0139760:CDS | 65.0% | |
| GTTTGGGCGCTCGAGGGGTT+CGG | - | chr1_3:73591318-73591337 | Msa0139760:CDS | 65.0% | |
| CGGAGCCCGTAAAGGGGTTG+TGG | - | chr1_3:73595160-73595179 | Msa0139760:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 73591312 | 73595690 | 73591312 | ID=Msa0139760;Name=Msa0139760 |
| chr1_3 | mRNA | 73591312 | 73595690 | 73591312 | ID=Msa0139760-mRNA-1;Parent=Msa0139760;Name=Msa0139760-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0|0|1|1|1|5|0|702 |
| chr1_3 | exon | 73595445 | 73595690 | 73595445 | ID=Msa0139760-mRNA-1:exon:25647;Parent=Msa0139760-mRNA-1 |
| chr1_3 | exon | 73593727 | 73594263 | 73593727 | ID=Msa0139760-mRNA-1:exon:25646;Parent=Msa0139760-mRNA-1 |
| chr1_3 | exon | 73592980 | 73593352 | 73592980 | ID=Msa0139760-mRNA-1:exon:25645;Parent=Msa0139760-mRNA-1 |
| chr1_3 | exon | 73591730 | 73592347 | 73591730 | ID=Msa0139760-mRNA-1:exon:25644;Parent=Msa0139760-mRNA-1 |
| chr1_3 | exon | 73591312 | 73591646 | 73591312 | ID=Msa0139760-mRNA-1:exon:25643;Parent=Msa0139760-mRNA-1 |
| chr1_3 | CDS | 73595445 | 73595690 | 73595445 | ID=Msa0139760-mRNA-1:cds;Parent=Msa0139760-mRNA-1 |
| chr1_3 | CDS | 73593727 | 73594263 | 73593727 | ID=Msa0139760-mRNA-1:cds;Parent=Msa0139760-mRNA-1 |
| chr1_3 | CDS | 73592980 | 73593352 | 73592980 | ID=Msa0139760-mRNA-1:cds;Parent=Msa0139760-mRNA-1 |
| chr1_3 | CDS | 73591730 | 73592347 | 73591730 | ID=Msa0139760-mRNA-1:cds;Parent=Msa0139760-mRNA-1 |
| chr1_3 | CDS | 73591312 | 73591646 | 73591312 | ID=Msa0139760-mRNA-1:cds;Parent=Msa0139760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
