AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0139810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0139810 MtrunA17_CPg0493001 98.060 670 13 0 429 1098 19 688 0.0 1361
Msa0139810 MtrunA17_CPg0493001 64.706 102 30 3 1056 1152 761 861 1.01e-26 118
Msa0139810 MtrunA17_Chr4g0016671 98.060 670 13 0 429 1098 19 688 0.0 1361
Msa0139810 MtrunA17_Chr4g0016671 64.706 102 30 3 1056 1152 761 861 1.01e-26 118
Msa0139810 MtrunA17_Chr3g0108441 98.387 434 5 1 1 432 1 434 0.0 873
Msa0139810 MtrunA17_Chr3g0108491 98.387 434 5 1 1 432 1 434 0.0 872
Msa0139810 MtrunA17_CPg0493021 98.387 434 5 1 1 432 1 434 0.0 872
Msa0139810 MtrunA17_Chr4g0016661 98.387 434 5 1 1 432 1 434 0.0 872
Msa0139810 MtrunA17_Chr4g0015581 88.208 424 7 1 529 952 1 381 0.0 756
Msa0139810 MtrunA17_Chr3g0095741 96.259 294 11 0 805 1098 8 301 0.0 579
Msa0139810 MtrunA17_Chr3g0095741 98.276 58 1 0 1095 1152 416 473 1.00e-27 118
Msa0139810 MtrunA17_Chr8g0342181 60.641 343 60 4 90 432 1 268 3.28e-118 367
Msa0139810 MtrunA17_Chr4g0015551 75.000 212 8 1 116 327 5 171 7.66e-95 300
Msa0139810 MtrunA17_Chr4g0015591 66.403 253 25 4 960 1152 1 253 2.79e-92 311
Msa0139810 MtrunA17_Chr3g0096371 95.652 115 5 0 168 282 1 115 8.80e-69 226
Msa0139810 MtrunA17_Chr4g0002751 82.796 93 16 0 128 220 1 93 9.20e-44 154
Msa0139810 MtrunA17_Chr2g0318321 91.667 60 5 0 426 485 35 94 3.47e-30 115
Msa0139810 MtrunA17_Chr4g0030401 28.247 308 191 6 140 423 248 549 4.60e-29 126
Msa0139810 MtrunA17_Chr4g0030391 28.803 309 188 7 140 423 247 548 7.21e-29 125
Msa0139810 MtrunA17_Chr5g0406121 28.526 312 190 6 141 423 241 548 1.12e-22 105
Msa0139810 MtrunA17_Chr4g0044991 26.582 316 181 7 151 423 317 624 2.19e-19 95.1
Msa0139810 MtrunA17_Chr4g0002761 66.667 54 18 0 375 428 1 54 7.82e-15 70.9
Msa0139810 MtrunA17_Chr4g0015571 94.286 35 2 0 426 460 16 50 1.51e-14 69.3
Msa0139810 MtrunA17_Chr8g0353071 26.733 303 190 11 145 422 211 506 6.46e-12 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0139810 ATCG00170.1 79.083 698 128 4 430 1125 16 697 0.0 1114
Msa0139810 ATCG00170.1 68.966 58 15 1 1095 1152 802 856 6.59e-16 84.0
Msa0139810 ATCG00180.1 91.768 413 32 1 20 432 142 552 0.0 784
Msa0139810 AT5G60040.1 28.710 310 188 5 141 423 250 553 4.40e-28 123
Msa0139810 AT5G60040.2 28.710 310 188 5 141 423 260 563 5.62e-28 123
Msa0139810 AT4G35800.2 28.710 310 192 5 141 423 242 549 9.56e-24 109
Msa0139810 AT4G35800.1 28.710 310 192 5 141 423 242 549 9.56e-24 109
Msa0139810 AT3G57660.2 25.600 375 215 12 151 479 335 691 6.30e-19 94.0
Msa0139810 AT3G57660.2 28.458 253 139 10 540 756 923 1169 8.11e-15 80.5
Msa0139810 AT3G57660.1 25.600 375 215 12 151 479 348 704 7.17e-19 93.6
Msa0139810 AT3G57660.1 28.458 253 139 10 540 756 936 1182 8.77e-15 80.5
Msa0139810 AT1G63020.4 23.577 369 237 11 79 422 152 500 4.08e-14 78.2
Msa0139810 AT1G63020.3 23.577 369 237 11 79 422 152 500 4.42e-14 78.2
Msa0139810 AT1G63020.1 23.577 369 237 11 79 422 152 500 4.44e-14 78.2
Msa0139810 AT1G63020.2 23.577 369 237 11 79 422 152 500 4.44e-14 78.2
Msa0139810 AT1G63020.5 27.604 192 123 3 247 422 1 192 6.78e-13 73.9
Msa0139810 AT2G40030.1 29.016 193 121 3 246 422 310 502 7.12e-11 67.4
Msa0139810 AT2G40030.2 29.016 193 121 3 246 422 310 502 8.21e-11 67.4

Find 232 sgRNAs with CRISPR-Local

Find 400 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTACTTTGATTTGGTATTT+TGG 0.149348 1_3:+73705266 None:intergenic
GTTTGTATCAAAATTCTTTC+TGG 0.155430 1_3:+73706520 None:intergenic
TTCTGGTATCATTCCATTTC+GGG 0.158141 1_3:+73706537 None:intergenic
TGAACAACAAAGTTCTATTT+TGG 0.177929 1_3:-73707001 Msa0139810:CDS
GTTGTCAATTATATTCTTTA+TGG 0.179224 1_3:-73704805 Msa0139810:CDS
TACGGATCATTCTCATTTAA+TGG 0.188994 1_3:-73705582 Msa0139810:CDS
TCTGGATTTAAGAATTATTA+TGG 0.190370 1_3:-73708852 Msa0139810:CDS
TCTGCTAATAAGTCGTTTAA+TGG 0.223864 1_3:+73707173 None:intergenic
ACCTCTTGTCTCCGGCTATT+GGG 0.225839 1_3:-73707908 Msa0139810:CDS
AAATCTATTTCTTCGTCTTT+TGG 0.240397 1_3:+73705523 None:intergenic
ATCCTCTCATTCCGACTAAT+TGG 0.248879 1_3:+73706794 None:intergenic
ACTATTATTCCGTACCATTA+TGG 0.259697 1_3:+73705193 None:intergenic
TGTTCATGTGCCTTTATCTT+TGG 0.264426 1_3:-73707973 Msa0139810:CDS
CCAACTCAAGATATGCTTAT+AGG 0.271742 1_3:-73707870 Msa0139810:CDS
CATTATATGGACTGGATTAA+AGG 0.289410 1_3:+73706855 None:intergenic
AATTATATTCTTTATGGAAA+TGG 0.289554 1_3:-73704799 Msa0139810:CDS
AACCTCTTGTCTCCGGCTAT+TGG 0.290298 1_3:-73707909 Msa0139810:CDS
GCACGTCCTTCTACTAAAAT+AGG 0.292699 1_3:+73708059 None:intergenic
GGATCTGCCGATTGTGTTAT+GGG 0.297223 1_3:-73706339 Msa0139810:CDS
TTTCTGGTATCATTCCATTT+CGG 0.299397 1_3:+73706536 None:intergenic
TAGATCTACTTGTTGTTAAT+AGG 0.299908 1_3:+73708537 None:intergenic
AGTCATTTATGGATCTTATC+AGG 0.301174 1_3:-73705812 Msa0139810:CDS
TGGATCTGCCGATTGTGTTA+TGG 0.301508 1_3:-73706340 Msa0139810:CDS
GGGTCAGTCATCCTAAAATT+AGG 0.301712 1_3:+73706877 None:intergenic
GGACTTGTTTAGTCTTGAAT+TGG 0.302268 1_3:-73704732 Msa0139810:CDS
AGCGCCTACTTTGCATAGAT+TGG 0.308716 1_3:-73708099 Msa0139810:CDS
CCTCCATCTATTTGAATAAT+CGG 0.310599 1_3:+73708629 None:intergenic
TTGGTAGAATGGAAAGAATT+AGG 0.313946 1_3:-73708821 Msa0139810:CDS
TCATGGGGACCTGGTAGAAT+TGG 0.318933 1_3:-73706305 Msa0139810:CDS
AAAATCGATCTACTTTGATT+TGG 0.319610 1_3:+73705258 None:intergenic
ACCCGAATCTTCTTCCATAA+TGG 0.320662 1_3:-73705207 Msa0139810:intron
TTCTCGTAAATTGCTTTGAA+TGG 0.322270 1_3:+73706735 None:intergenic
TTATTAAGTTTGAAGACTTT+TGG 0.326721 1_3:-73705656 Msa0139810:CDS
TTTACATCCATTAGTGTGTA+AGG 0.327520 1_3:-73708030 Msa0139810:CDS
CAGTATCCACAACCCCTTTA+CGG 0.329838 1_3:+73706671 None:intergenic
AACTTTGTTGTTCAGCATCT+TGG 0.334259 1_3:+73707010 None:intergenic
AGAAATCAAGATATTGGAAT+TGG 0.334567 1_3:-73706439 Msa0139810:CDS
TACGCCAATCCATTGAAATA+TGG 0.339395 1_3:-73706936 Msa0139810:CDS
ATTATTGCTGGTCAATCTAT+TGG 0.340445 1_3:-73706268 Msa0139810:CDS
TTGAATAATCGGTCTCAATT+CGG 0.341142 1_3:+73708640 None:intergenic
GTCGTTAGAAATCAAGATAT+TGG 0.341954 1_3:-73706445 Msa0139810:CDS
GGAAAACGAGTTGATTATTC+GGG 0.350240 1_3:-73708344 Msa0139810:CDS
AGACCGATTATTCAAATAGA+TGG 0.352617 1_3:-73708632 Msa0139810:CDS
ACTGCTACATCTATTTCATT+AGG 0.354727 1_3:-73707075 Msa0139810:CDS
TGGAAAACGAGTTGATTATT+CGG 0.358566 1_3:-73708345 Msa0139810:CDS
ATCTTGAGTTGGTACGGAAA+TGG 0.362284 1_3:+73707881 None:intergenic
GGATACTGTATTTCCAAGAT+TGG 0.364284 1_3:+73708963 None:intergenic
TGAATAATCGGTCTCAATTC+GGG 0.364643 1_3:+73708641 None:intergenic
CTTAATGTTAGTTGAGTTCC+CGG 0.369671 1_3:+73706241 None:intergenic
ATTCCAGGAAAGAGATAATC+TGG 0.369993 1_3:-73704836 Msa0139810:intron
ATTATATGGACTGGATTAAA+GGG 0.370361 1_3:+73706856 None:intergenic
AACATTGATTCTCTTTCTAC+TGG 0.378165 1_3:-73705731 Msa0139810:CDS
TCAAGTTATAACTGTTCAAA+TGG 0.378796 1_3:+73704214 None:intergenic
GGTAAAATATGCACTTCTTC+GGG 0.379845 1_3:+73705227 None:intergenic
TGGACTAGCCATCCTTTAGA+AGG 0.382153 1_3:+73707030 None:intergenic
TTCCGCTAGTTAATACATAA+AGG 0.382446 1_3:+73707847 None:intergenic
TTGAATCCCTTACACACTAA+TGG 0.385461 1_3:+73708023 None:intergenic
GTGGATACACTCCTTGATAA+TGG 0.387696 1_3:-73708467 Msa0139810:CDS
TACCATTATGGAAGAAGATT+CGG 0.389569 1_3:+73705205 None:intergenic
ATTTCTGTAAATACCCGAAA+TGG 0.389944 1_3:-73706550 Msa0139810:CDS
GGGTAAAATATGCACTTCTT+CGG 0.392587 1_3:+73705226 None:intergenic
TTTCAGACATTTCTAATTCG+TGG 0.395006 1_3:-73708245 Msa0139810:CDS
GACTTGTTTAGTCTTGAATT+GGG 0.395976 1_3:-73704731 Msa0139810:CDS
TGGAAATGGAAAATCCATTC+GGG 0.398927 1_3:-73704785 Msa0139810:CDS
ACGAGAACAATTAGTTGATC+TGG 0.400881 1_3:-73708870 Msa0139810:CDS
GGCGCTCTATTCAGCAATAC+TGG 0.401200 1_3:+73708116 None:intergenic
AGTATCCACAACCCCTTTAC+GGG 0.401249 1_3:+73706672 None:intergenic
AGACATAAAACCATCCATTC+TGG 0.402557 1_3:+73708680 None:intergenic
TGGTCAATCTATTGGCGAAC+CGG 0.405693 1_3:-73706260 Msa0139810:CDS
ATTACTAAATATAGAACTAT+AGG 0.405919 1_3:-73705350 Msa0139810:CDS
TGGATTCTTCGTTGGTAGAA+TGG 0.407733 1_3:-73708832 Msa0139810:CDS
GGATTCAATGCAGACTTTGA+TGG 0.407959 1_3:-73708008 Msa0139810:CDS
TCATGTGCCTTTATCTTTGG+AGG 0.409231 1_3:-73707970 Msa0139810:CDS
CTTGCTACGGAGCCCGTAAA+GGG 0.410011 1_3:-73706684 Msa0139810:CDS
AGCAGATTAATAGACCATTT+CGG 0.411046 1_3:-73707156 Msa0139810:CDS
GCTTGAGCCTCCAAAGATAA+AGG 0.413525 1_3:+73707963 None:intergenic
AACGAACTAATGCGACCTTC+TGG 0.414791 1_3:-73705467 Msa0139810:CDS
TCTTTCCTTCTTGAATCGAT+TGG 0.414961 1_3:+73705489 None:intergenic
TCGAATATGAAATCCAATCT+TGG 0.418713 1_3:-73708976 Msa0139810:CDS
GACGTATTCCTACAGGTAAA+GGG 0.421613 1_3:+73706364 None:intergenic
ACCATTGATAGGTATTTCAA+TGG 0.423769 1_3:+73705439 None:intergenic
GATTCAATGCAGACTTTGAT+GGG 0.425961 1_3:-73708007 Msa0139810:CDS
TCTTGAGTTGGTACGGAAAT+GGG 0.426083 1_3:+73707882 None:intergenic
CTCAATTCGGGAGGAAGAAC+TGG 0.430438 1_3:+73708653 None:intergenic
TCTCGTAAATTGCTTTGAAT+GGG 0.433790 1_3:+73706736 None:intergenic
ATTCTGGTTCTATATTTGTT+CGG 0.435196 1_3:+73708696 None:intergenic
TTATTATGACCGTCCCTCAT+TGG 0.440271 1_3:+73708431 None:intergenic
TCTACCAGGTCCCCATGAAT+AGG 0.440638 1_3:+73706310 None:intergenic
ATGGAAATGGAAAATCCATT+CGG 0.440917 1_3:-73704786 Msa0139810:CDS
CATGGGGACCTGGTAGAATT+GGG 0.442448 1_3:-73706304 Msa0139810:CDS
CATACCATATTTCAATGGAT+TGG 0.443039 1_3:+73706932 None:intergenic
CAATACAGAAGACAGAATTC+AGG 0.444868 1_3:-73705374 Msa0139810:CDS
CAGATTGCGGTACGATTCGC+GGG 0.446348 1_3:-73706573 Msa0139810:CDS
TTTGCATAGATTGGGCATAC+AGG 0.446557 1_3:-73708090 Msa0139810:CDS
TGTAGCATACCATATTTCAA+TGG 0.450731 1_3:+73706927 None:intergenic
CATACTGGTGGAGTATTCAC+AGG 0.451249 1_3:-73706211 Msa0139810:CDS
ACCATTATGGAAGAAGATTC+GGG 0.451336 1_3:+73705206 None:intergenic
TCCATTGAAATACCTATCAA+TGG 0.461052 1_3:-73705440 Msa0139810:CDS
CTGGATCAAGTAAAGACTCT+AGG 0.462436 1_3:-73707111 Msa0139810:CDS
CACTGACAATGAAAATGAAT+GGG 0.463118 1_3:-73708786 Msa0139810:CDS
CTAGAGTCTTTACTTGATCC+AGG 0.463607 1_3:+73707112 None:intergenic
CCACTGACAATGAAAATGAA+TGG 0.464389 1_3:-73708787 Msa0139810:CDS
AGACGTATTCCTACAGGTAA+AGG 0.465006 1_3:+73706363 None:intergenic
TGGAAAGAATTAGGAGAAGA+GGG 0.467304 1_3:-73708812 Msa0139810:CDS
CCTTCTTGAATCGATTGGAA+TGG 0.469170 1_3:+73705494 None:intergenic
ACACAAGGATTCAATTAGTT+CGG 0.470880 1_3:-73704753 Msa0139810:CDS
GTAGCAGACGATATATATAT+CGG 0.471989 1_3:-73706481 Msa0139810:CDS
GAATTCTGTCTTCTGTATTG+AGG 0.475926 1_3:+73705377 None:intergenic
GCGCCTACTTTGCATAGATT+GGG 0.476543 1_3:-73708098 Msa0139810:CDS
TGAAGTATTTCCCATACAAT+CGG 0.477354 1_3:+73708158 None:intergenic
CCTCTTGTCTCCGGCTATTG+GGG 0.480180 1_3:-73707907 Msa0139810:CDS
GGGCGTTCTGTTATTGTCGT+AGG 0.483193 1_3:-73708323 Msa0139810:CDS
AGAGAAATTTCTAGTGGAGC+AGG 0.488408 1_3:-73708899 Msa0139810:CDS
TTAGTCTTGAATTGGGATCA+AGG 0.488756 1_3:-73704724 Msa0139810:CDS
TCTTGCTACGGAGCCCGTAA+AGG 0.490200 1_3:-73706685 Msa0139810:CDS
TGGAGGGAAACTAATGAGTT+CGG 0.494350 1_3:-73708612 Msa0139810:CDS
GGCATATACATCACACATCC+TGG 0.495134 1_3:-73707130 Msa0139810:CDS
TAACAATACCTTCTAAAGGA+TGG 0.495965 1_3:-73707038 Msa0139810:CDS
ACTCAGAAGGCGAAATGCAT+TGG 0.496258 1_3:-73705898 Msa0139810:CDS
CGAAATAGAGAAATTTCTAG+TGG 0.496839 1_3:-73708905 Msa0139810:CDS
TAGCTCTATTGCTATTTCGC+GGG 0.496998 1_3:+73708268 None:intergenic
AATTATTATGGATTCTTCGT+TGG 0.499116 1_3:-73708840 Msa0139810:CDS
GAAGCTGTAGGTATTATTGC+TGG 0.500714 1_3:-73706280 Msa0139810:CDS
TCATACAAACCTCTTGTCTC+CGG 0.506883 1_3:-73707916 Msa0139810:CDS
ATGGGCGGAGTCCTATTCAT+GGG 0.508984 1_3:-73706321 Msa0139810:CDS
GAATGGGAAGATCGAAAAGT+AGG 0.511851 1_3:-73708770 Msa0139810:CDS
GACTCCGCCCATAACACAAT+CGG 0.512450 1_3:+73706332 None:intergenic
CCTCGTAATCGTAAGAAAGT+AGG 0.512515 1_3:+73709004 None:intergenic
CGGAGCCCGTAAAGGGGTTG+TGG 0.513039 1_3:-73706677 Msa0139810:CDS
AAATCAATCATTTGTCCTTG+TGG 0.513235 1_3:+73706760 None:intergenic
ATGGAAAGAATTAGGAGAAG+AGG 0.513927 1_3:-73708813 Msa0139810:CDS
ATAGCTCTATTGCTATTTCG+CGG 0.516257 1_3:+73708267 None:intergenic
TAGATGTAGCAGTAGCTTGA+CGG 0.516966 1_3:+73707085 None:intergenic
TATGGGCGGAGTCCTATTCA+TGG 0.517790 1_3:-73706322 Msa0139810:CDS
GAGTTGCTAAGAGTAAAATA+CGG 0.520079 1_3:-73708190 Msa0139810:CDS
AGATTTCGAGAGACTCTGCT+TGG 0.523467 1_3:-73708365 Msa0139810:CDS
ATGTATATGCCATTCCGAAA+TGG 0.525535 1_3:+73707142 None:intergenic
GGTCAATCTATTGGCGAACC+GGG 0.527123 1_3:-73706259 Msa0139810:CDS
AGACTTTGATGGGGATCAAA+TGG 0.531054 1_3:-73707997 Msa0139810:CDS
ACAGATTGCGGTACGATTCG+CGG 0.531220 1_3:-73706574 Msa0139810:CDS
GTCCGCGGATTCCATTATCA+AGG 0.532137 1_3:+73708456 None:intergenic
CCTATAAGCATATCTTGAGT+TGG 0.532621 1_3:+73707870 None:intergenic
ATTTAATCAAATAATATGTA+CGG 0.533241 1_3:-73705600 Msa0139810:CDS
TTGGATAGGATCCAATAAGA+TGG 0.534215 1_3:+73709059 None:intergenic
GAATATATAATTTCTTGCTA+CGG 0.534554 1_3:-73706697 Msa0139810:CDS
ATCCATGACGTGTACGTGTA+GGG 0.535056 1_3:+73706122 None:intergenic
CAGCTTCTCCCAATTCTACC+AGG 0.535523 1_3:+73706296 None:intergenic
GATATAATTGAGGGCAAAGA+GGG 0.535939 1_3:-73708389 Msa0139810:CDS
TCTATATTACATATAAAAGC+AGG 0.536951 1_3:+73706097 None:intergenic
TGGATCAAGTAAAGACTCTA+GGG 0.538268 1_3:-73707110 Msa0139810:CDS
AATACTTCAAGAAGTTATGC+GGG 0.538847 1_3:-73708144 Msa0139810:CDS
ACTTACTTCAACAAAGGAAG+AGG 0.540450 1_3:+73704672 None:intergenic
AAGCATATCTTGAGTTGGTA+CGG 0.543078 1_3:+73707875 None:intergenic
CCATTCCAATCGATTCAAGA+AGG 0.543286 1_3:-73705494 Msa0139810:CDS
TTCGGGGAATTTCCGACACA+AGG 0.543374 1_3:-73704768 Msa0139810:CDS
GATCCAAGACGTATTCCTAC+AGG 0.544747 1_3:+73706357 None:intergenic
TTACCTGTAGGAATACGTCT+TGG 0.547868 1_3:-73706360 Msa0139810:CDS
CCTTTGAAAATCGGACGTGA+GGG 0.548394 1_3:+73709089 None:intergenic
CATATTTATTCTGACTCAGA+AGG 0.548655 1_3:-73705911 Msa0139810:CDS
TGACACATTACTAATTCCCC+TGG 0.549045 1_3:+73708512 None:intergenic
GAACAAATATAGAACCAGAA+TGG 0.550621 1_3:-73708694 Msa0139810:CDS
CCCTTTGAAAATCGGACGTG+AGG 0.550708 1_3:+73709088 None:intergenic
GTTTGTACTTACTTCAACAA+AGG 0.560389 1_3:+73704666 None:intergenic
AGTTGCTAAGAGTAAAATAC+GGG 0.563519 1_3:-73708189 Msa0139810:CDS
TTACATCCATTAGTGTGTAA+GGG 0.565613 1_3:-73708029 Msa0139810:CDS
CACCCTACACGTACACGTCA+TGG 0.566616 1_3:-73706124 Msa0139810:CDS
AAATATAGAACCAGAATGGA+TGG 0.566690 1_3:-73708690 Msa0139810:CDS
TCTATAGAAGAGTTATCTAT+CGG 0.571448 1_3:-73708577 Msa0139810:CDS
GCTGTACGAACATCAGATGC+TGG 0.573261 1_3:-73706649 Msa0139810:CDS
TACACGTCGACTTGTTGAAG+TGG 0.573503 1_3:-73706620 Msa0139810:CDS
CCGATTATTCAAATAGATGG+AGG 0.576436 1_3:-73708629 Msa0139810:CDS
GAAGATTTCATTGAGTATCG+AGG 0.578377 1_3:-73705305 Msa0139810:CDS
ATGCCCAATCTATGCAAAGT+AGG 0.578492 1_3:+73708095 None:intergenic
CACCAATTAGTCGGAATGAG+AGG 0.580106 1_3:-73706796 Msa0139810:CDS
GAGTCCTATTCATGGGGACC+TGG 0.582108 1_3:-73706314 Msa0139810:CDS
AACTAATTGAATCCTTGTGT+CGG 0.584495 1_3:+73704756 None:intergenic
TCACTTTCATTACATCGATG+TGG 0.585158 1_3:-73708296 Msa0139810:CDS
TCTTATCAGGAAAGTCGTGC+AGG 0.586356 1_3:-73705799 Msa0139810:CDS
ATTAATAGACCATTTCGGAA+TGG 0.587547 1_3:-73707151 Msa0139810:CDS
CCTACTTTCTTACGATTACG+AGG 0.587628 1_3:-73709004 Msa0139810:CDS
GAAATGGGATCCCCAATAGC+CGG 0.587924 1_3:+73707897 None:intergenic
TGTGTCGGAAATTCCCCGAA+TGG 0.589742 1_3:+73704771 None:intergenic
ACGATATATATATCGGTTCA+CGG 0.590851 1_3:-73706474 Msa0139810:CDS
GGCCTTTATGTATTAACTAG+CGG 0.596927 1_3:-73707849 Msa0139810:CDS
AAAATTGGTACAAGAAGCCG+TGG 0.599616 1_3:-73708486 Msa0139810:CDS
TATCCATGACGTGTACGTGT+AGG 0.600683 1_3:+73706121 None:intergenic
AGCTCTATTGCTATTTCGCG+GGG 0.600779 1_3:+73708269 None:intergenic
ATTCAAAGCAATTTACGAGA+AGG 0.601229 1_3:-73706733 Msa0139810:CDS
CTCCTTGATAATGGAATCCG+CGG 0.604913 1_3:-73708458 Msa0139810:CDS
AGATATAATTGAGGGCAAAG+AGG 0.606620 1_3:-73708390 Msa0139810:CDS
CATCGATGTAATGAAAGTGA+TGG 0.607503 1_3:+73708299 None:intergenic
CTTACTTCAACAAAGGAAGA+GGG 0.610881 1_3:+73704673 None:intergenic
TACTTCAACAAAGGAAGAGG+GGG 0.611335 1_3:+73704675 None:intergenic
TCTCAAGTGCACCAATTAGT+CGG 0.615181 1_3:-73706805 Msa0139810:CDS
CCCCAATAGCCGGAGACAAG+AGG 0.615798 1_3:+73707907 None:intergenic
ATTATCAAGGAGTGTATCCA+CGG 0.619206 1_3:+73708469 None:intergenic
AATCCGCGGACAACCAATGA+GGG 0.620928 1_3:-73708444 Msa0139810:CDS
AAATACTTTAGCCGGATGAG+AGG 0.622971 1_3:-73709115 None:intergenic
CGTCCCTCATTGGTTGTCCG+CGG 0.625858 1_3:+73708441 None:intergenic
GTGATTGCTGAGATCCGCGC+GGG 0.626051 1_3:-73705971 Msa0139810:CDS
ACGTATTCCTACAGGTAAAG+GGG 0.629974 1_3:+73706365 None:intergenic
TTGCTACGGAGCCCGTAAAG+GGG 0.638134 1_3:-73706683 Msa0139810:CDS
AAATACTTCAAGAAGTTATG+CGG 0.639489 1_3:-73708145 Msa0139810:CDS
CGATTATTCAAATAGATGGA+GGG 0.639639 1_3:-73708628 Msa0139810:CDS
GTAGAATTGGGAGAAGCTGT+AGG 0.641313 1_3:-73706292 Msa0139810:CDS
ATACTGGTGGAGTATTCACA+GGG 0.646983 1_3:-73706210 Msa0139810:CDS
CGCGGACAACCAATGAGGGA+CGG 0.650205 1_3:-73708440 Msa0139810:CDS
GTTGTACGTCGAACAGATTG+CGG 0.659130 1_3:-73706586 Msa0139810:CDS
ACAACAAGTAGATCTACACC+AGG 0.661649 1_3:-73708530 Msa0139810:CDS
ATTCAATGCAGACTTTGATG+GGG 0.662689 1_3:-73708006 Msa0139810:CDS
GAAAACGAGTTGATTATTCG+GGG 0.664266 1_3:-73708343 Msa0139810:CDS
TGGGCGGAGTCCTATTCATG+GGG 0.665077 1_3:-73706320 Msa0139810:CDS
GAATCCGCGGACAACCAATG+AGG 0.667535 1_3:-73708445 Msa0139810:CDS
TACTTCAAGAAGTTATGCGG+GGG 0.669171 1_3:-73708142 Msa0139810:CDS
ATTTCAATGGAAACACCAGA+AGG 0.673294 1_3:+73705452 None:intergenic
CGTATTCCTACAGGTAAAGG+GGG 0.679391 1_3:+73706366 None:intergenic
TTACTTCAACAAAGGAAGAG+GGG 0.682642 1_3:+73704674 None:intergenic
TTATATGGACTGGATTAAAG+GGG 0.684921 1_3:+73706857 None:intergenic
ATACTTCAAGAAGTTATGCG+GGG 0.687954 1_3:-73708143 Msa0139810:CDS
TCAGTATGGGAATGTACATG+CGG 0.691247 1_3:-73706968 Msa0139810:CDS
GGAAATGGAAAATCCATTCG+GGG 0.695544 1_3:-73704784 Msa0139810:CDS
TTCGGATGCATGGTACACAT+CGG 0.696241 1_3:+73705871 None:intergenic
CAACAAGTAGATCTACACCA+GGG 0.701288 1_3:-73708529 Msa0139810:CDS
AACAAGTAGATCTACACCAG+GGG 0.706918 1_3:-73708528 Msa0139810:CDS
GGATTAATGTCAGATCCACA+AGG 0.711466 1_3:-73706775 Msa0139810:CDS
ATAATCGGTCTCAATTCGGG+AGG 0.712530 1_3:+73708644 None:intergenic
TTAACTAGCGGAAATCGTCG+AGG 0.734048 1_3:-73707837 Msa0139810:intron
TCTGCCGATTGTGTTATGGG+CGG 0.746299 1_3:-73706336 Msa0139810:CDS
TAAAAGTATATGTTCCCGCG+CGG 0.748407 1_3:+73705957 None:intergenic
ACTGGTGGAGTATTCACAGG+GGG 0.750203 1_3:-73706208 Msa0139810:CDS
AGTGATTGCTGAGATCCGCG+CGG 0.769084 1_3:-73705972 Msa0139810:CDS
TACTGGTGGAGTATTCACAG+GGG 0.793942 1_3:-73706209 Msa0139810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAATCAAATAATATGTA+CGG - chr1_3:73707719-73707738 Msa0139810:intron 10.0%
!!! TTTTTTTTTTCTTTTCTAAT+CGG + chr1_3:73708211-73708230 None:intergenic 10.0%
!!! ATTTTGATACAAACATTAAT+TGG - chr1_3:73706808-73706827 Msa0139810:CDS 15.0%
!!! ATACTTTTAATTTGAAAGAA+AGG - chr1_3:73707376-73707395 Msa0139810:intron 15.0%
!!! TACTTTTAATTTGAAAGAAA+GGG - chr1_3:73707377-73707396 Msa0139810:intron 15.0%
!! TACATTACTATACAAAAATT+CGG + chr1_3:73707469-73707488 None:intergenic 15.0%
!! ATTACTAAATATAGAACTAT+AGG - chr1_3:73707969-73707988 Msa0139810:CDS 15.0%
!!! ATCGAATTAAAAATATTTTC+TGG - chr1_3:73708233-73708252 Msa0139810:CDS 15.0%
!! GAATCAAAAAAATTCATAAT+TGG - chr1_3:73708344-73708363 Msa0139810:CDS 15.0%
!!! TGTAATTTTATATGAAATAC+CGG - chr1_3:73708423-73708442 Msa0139810:CDS 15.0%
!! AATTATATTCTTTATGGAAA+TGG - chr1_3:73708520-73708539 Msa0139810:CDS 15.0%
!! TCTGGATTTAAGAATTATTA+TGG - chr1_3:73704467-73704486 Msa0139810:intron 20.0%
!! TTAGAATTTCTGCAATTAAA+CGG + chr1_3:73705530-73705549 None:intergenic 20.0%
!! GTACCTATTATGAAATTTAT+GGG - chr1_3:73705747-73705766 Msa0139810:CDS 20.0%
!! GTAAATTTATGTTATGATAC+TGG - chr1_3:73705941-73705960 Msa0139810:CDS 20.0%
!!! AAGAAATGAATCCTAATTTT+AGG - chr1_3:73706431-73706450 Msa0139810:CDS 20.0%
!! GAATATATAATTTCTTGCTA+CGG - chr1_3:73706622-73706641 Msa0139810:CDS 20.0%
!!! AATTTTATTTTTCCATTCGA+GGG + chr1_3:73707159-73707178 None:intergenic 20.0%
!!! AAATTTTATTTTTCCATTCG+AGG + chr1_3:73707160-73707179 None:intergenic 20.0%
!! TCTATATTACATATAAAAGC+AGG + chr1_3:73707225-73707244 None:intergenic 20.0%
!!! TGAACTAATAGAAAACTTTT+TGG + chr1_3:73707300-73707319 None:intergenic 20.0%
!!! TTATTAAGTTTGAAGACTTT+TGG - chr1_3:73707663-73707682 Msa0139810:intron 20.0%
!!! TCACGATACTTTTTATTTAT+TGG - chr1_3:73707773-73707792 Msa0139810:intron 20.0%
!!! GAAATCTTCTTTTTGAAAAA+CGG + chr1_3:73708003-73708022 None:intergenic 20.0%
!!! CAAAACAAAATACTTTTTCT+TGG + chr1_3:73708395-73708414 None:intergenic 20.0%
!!! CAAGAAAAAGTATTTTGTTT+TGG - chr1_3:73708393-73708412 Msa0139810:CDS 20.0%
!!! AAAAGTATTTTGTTTTGGTT+CGG - chr1_3:73708398-73708417 Msa0139810:CDS 20.0%
!! GGTATTTCATATAAAATTAC+AGG + chr1_3:73708424-73708443 None:intergenic 20.0%
!! GTTGTCAATTATATTCTTTA+TGG - chr1_3:73708514-73708533 Msa0139810:CDS 20.0%
!!! TGATTTTTTAATTTTTGCCT+TGG + chr1_3:73708823-73708842 None:intergenic 20.0%
!! TATGTTGTTGAATAGAAATA+AGG - chr1_3:73708869-73708888 Msa0139810:CDS 20.0%
!! TGATATTTAACATTGTTGAA+TGG + chr1_3:73708945-73708964 None:intergenic 20.0%
!! AACAATGTTAAATATCACAA+TGG - chr1_3:73708948-73708967 Msa0139810:CDS 20.0%
!! ACAATGTTAAATATCACAAT+GGG - chr1_3:73708949-73708968 Msa0139810:CDS 20.0%
!! CAAAAATCACTTAATTCATA+CGG - chr1_3:73709009-73709028 Msa0139810:CDS 20.0%
!!! AAAGTAGGTTTTTTAACTAC+GGG + chr1_3:73704303-73704322 None:intergenic 25.0%
!!! GAAAGTAGGTTTTTTAACTA+CGG + chr1_3:73704304-73704323 None:intergenic 25.0%
! AATTATTATGGATTCTTCGT+TGG - chr1_3:73704479-73704498 Msa0139810:intron 25.0%
!!! AGGAAGAAGAAAGAATTTTT+TGG - chr1_3:73704569-73704588 Msa0139810:intron 25.0%
!!! ATTCTGGTTCTATATTTGTT+CGG + chr1_3:73704626-73704645 None:intergenic 25.0%
! TCTATAGAAGAGTTATCTAT+CGG - chr1_3:73704742-73704761 Msa0139810:CDS 25.0%
!!! TAGATCTACTTGTTGTTAAT+AGG + chr1_3:73704785-73704804 None:intergenic 25.0%
! AGTAATGTGTCAAGAAAAAT+TGG - chr1_3:73704818-73704837 Msa0139810:CDS 25.0%
!! ATCGTTTTCAGATATAATTG+AGG - chr1_3:73704920-73704939 Msa0139810:intron 25.0%
!! TCGTTTTCAGATATAATTGA+GGG - chr1_3:73704921-73704940 Msa0139810:intron 25.0%
! AAATACTTCAAGAAGTTATG+CGG - chr1_3:73705174-73705193 Msa0139810:intron 25.0%
!!! TTTCAACCTATTTTAGTAGA+AGG - chr1_3:73705254-73705273 Msa0139810:CDS 25.0%
! TCATAGGAATTGCAAAAAAA+GGG + chr1_3:73705602-73705621 None:intergenic 25.0%
! ATCATAGGAATTGCAAAAAA+AGG + chr1_3:73705603-73705622 None:intergenic 25.0%
!! TAAATTTCGATAGTCCTTTT+TGG - chr1_3:73705651-73705670 Msa0139810:CDS 25.0%
! GGTACCTATTATGAAATTTA+TGG - chr1_3:73705746-73705765 Msa0139810:CDS 25.0%
! ATGCCCATAAATTTCATAAT+AGG + chr1_3:73705753-73705772 None:intergenic 25.0%
! TGATTAGATACCATATGAAT+AGG + chr1_3:73705891-73705910 None:intergenic 25.0%
! ATGGTATCTAATCATATAGA+TGG - chr1_3:73705897-73705916 Msa0139810:CDS 25.0%
! ATAACATAAATTTACCTAGC+TGG + chr1_3:73705936-73705955 None:intergenic 25.0%
! CGTGAATAAACATAAAGAAA+AGG - chr1_3:73706002-73706021 Msa0139810:CDS 25.0%
! AATGAATTTGAGTCAATGAT+TGG + chr1_3:73706035-73706054 None:intergenic 25.0%
!! CTTTTAACAATACCTTCTAA+AGG - chr1_3:73706277-73706296 Msa0139810:CDS 25.0%
!! TGAACAACAAAGTTCTATTT+TGG - chr1_3:73706318-73706337 Msa0139810:CDS 25.0%
! TTGGAAAAACATAATCAGTA+TGG - chr1_3:73706337-73706356 Msa0139810:CDS 25.0%
! TGGAAAAACATAATCAGTAT+GGG - chr1_3:73706338-73706357 Msa0139810:CDS 25.0%
!!! ATTATATGGACTGGATTAAA+GGG + chr1_3:73706466-73706485 None:intergenic 25.0%
! GTTTGTATCAAAATTCTTTC+TGG + chr1_3:73706802-73706821 None:intergenic 25.0%
! AGAAATCAAGATATTGGAAT+TGG - chr1_3:73706880-73706899 Msa0139810:CDS 25.0%
!! ACATTAAGAACTTTTCATAC+TGG - chr1_3:73707093-73707112 Msa0139810:CDS 25.0%
!!! ATTTTATTTTTCCATTCGAG+GGG + chr1_3:73707158-73707177 None:intergenic 25.0%
!! ACTAATAGAAAACTTTTTGG+TGG + chr1_3:73707297-73707316 None:intergenic 25.0%
! TACCAAAAACAAGTCATTTA+TGG - chr1_3:73707496-73707515 Msa0139810:intron 25.0%
!!! ATCCATAAATGACTTGTTTT+TGG + chr1_3:73707501-73707520 None:intergenic 25.0%
!! ACTTTTGGTACAAAAGAAAA+GGG - chr1_3:73707678-73707697 Msa0139810:intron 25.0%
!!! AAATCTATTTCTTCGTCTTT+TGG + chr1_3:73707799-73707818 None:intergenic 25.0%
! CTATGAAAAATACCATTGAT+AGG + chr1_3:73707894-73707913 None:intergenic 25.0%
!!! TCTACTTTGATTTGGTATTT+TGG + chr1_3:73708056-73708075 None:intergenic 25.0%
! AAAATCGATCTACTTTGATT+TGG + chr1_3:73708064-73708083 None:intergenic 25.0%
! CTTCTTATATTGAAAGTGAT+TGG + chr1_3:73708170-73708189 None:intergenic 25.0%
! AACGGTAAAAAAAAAATGGA+AGG - chr1_3:73708322-73708341 Msa0139810:CDS 25.0%
!!! CAAAAAAAGTACTTCTATTG+AGG - chr1_3:73708618-73708637 Msa0139810:CDS 25.0%
! TTTGTTGAAGTAAGTACAAA+CGG - chr1_3:73708655-73708674 Msa0139810:CDS 25.0%
! CTTGGAATGAATAGAAAAAA+TGG + chr1_3:73708805-73708824 None:intergenic 25.0%
!!! CATTTTTTCTATTCATTCCA+AGG - chr1_3:73708803-73708822 Msa0139810:CDS 25.0%
! ATGACAAAATTATCCAAGAT+CGG + chr1_3:73708899-73708918 None:intergenic 25.0%
!! AATTCATACGGTTTTTAATG+TGG - chr1_3:73709021-73709040 Msa0139810:CDS 25.0%
! ATAATAAGATCGGATATTTG+AGG + chr1_3:73709077-73709096 None:intergenic 25.0%
! GGATTCTGTAATAATAAGAT+CGG + chr1_3:73709087-73709106 None:intergenic 25.0%
AGCAAACGAAAAATTTGGAT+AGG + chr1_3:73704277-73704296 None:intergenic 30.0%
! ATCCAAATTTTTCGTTTGCT+AGG - chr1_3:73704277-73704296 Msa0139810:intron 30.0%
TCGAATATGAAATCCAATCT+TGG - chr1_3:73704343-73704362 Msa0139810:intron 30.0%
! CGAAATAGAGAAATTTCTAG+TGG - chr1_3:73704414-73704433 Msa0139810:intron 30.0%
TTGGTAGAATGGAAAGAATT+AGG - chr1_3:73704498-73704517 Msa0139810:intron 30.0%
CACTGACAATGAAAATGAAT+GGG - chr1_3:73704533-73704552 Msa0139810:intron 30.0%
GAACAAATATAGAACCAGAA+TGG - chr1_3:73704625-73704644 Msa0139810:intron 30.0%
AAATATAGAACCAGAATGGA+TGG - chr1_3:73704629-73704648 Msa0139810:intron 30.0%
TTGAATAATCGGTCTCAATT+CGG + chr1_3:73704682-73704701 None:intergenic 30.0%
AGACCGATTATTCAAATAGA+TGG - chr1_3:73704687-73704706 Msa0139810:CDS 30.0%
CCTCCATCTATTTGAATAAT+CGG + chr1_3:73704693-73704712 None:intergenic 30.0%
CGATTATTCAAATAGATGGA+GGG - chr1_3:73704691-73704710 Msa0139810:CDS 30.0%
!! TGGAAAACGAGTTGATTATT+CGG - chr1_3:73704974-73704993 Msa0139810:intron 30.0%
TTTCAGACATTTCTAATTCG+TGG - chr1_3:73705074-73705093 Msa0139810:intron 30.0%
! AAACATTTTGCTTCGAACAT+AGG - chr1_3:73705107-73705126 Msa0139810:intron 30.0%
GAGTTGCTAAGAGTAAAATA+CGG - chr1_3:73705129-73705148 Msa0139810:intron 30.0%
AGTTGCTAAGAGTAAAATAC+GGG - chr1_3:73705130-73705149 Msa0139810:intron 30.0%
! TGAAGTATTTCCCATACAAT+CGG + chr1_3:73705164-73705183 None:intergenic 30.0%
AATACTTCAAGAAGTTATGC+GGG - chr1_3:73705175-73705194 Msa0139810:intron 30.0%
TTTACATCCATTAGTGTGTA+AGG - chr1_3:73705289-73705308 Msa0139810:CDS 30.0%
TTACATCCATTAGTGTGTAA+GGG - chr1_3:73705290-73705309 Msa0139810:CDS 30.0%
TTCCGCTAGTTAATACATAA+AGG + chr1_3:73705475-73705494 None:intergenic 30.0%
! GAAGTTCACTATGAATCTTT+TGG - chr1_3:73705725-73705744 Msa0139810:CDS 30.0%
ATATACATTAGAACCACTGT+TGG - chr1_3:73705812-73705831 Msa0139810:CDS 30.0%
AAAAGAAATATGACCAACAG+TGG + chr1_3:73705828-73705847 None:intergenic 30.0%
GAAATTGAAGAAGCTATACA+AGG - chr1_3:73705854-73705873 Msa0139810:CDS 30.0%
GTTATTGTGAAAGACTAGAT+TGG + chr1_3:73706110-73706129 None:intergenic 30.0%
TCTGCTAATAAGTCGTTTAA+TGG + chr1_3:73706149-73706168 None:intergenic 30.0%
AGCAGATTAATAGACCATTT+CGG - chr1_3:73706163-73706182 Msa0139810:CDS 30.0%
ATTAATAGACCATTTCGGAA+TGG - chr1_3:73706168-73706187 Msa0139810:CDS 30.0%
ACTGCTACATCTATTTCATT+AGG - chr1_3:73706244-73706263 Msa0139810:CDS 30.0%
! TAACAATACCTTCTAAAGGA+TGG - chr1_3:73706281-73706300 Msa0139810:CDS 30.0%
CATACCATATTTCAATGGAT+TGG + chr1_3:73706390-73706409 None:intergenic 30.0%
TGTAGCATACCATATTTCAA+TGG + chr1_3:73706395-73706414 None:intergenic 30.0%
!! TTATATGGACTGGATTAAAG+GGG + chr1_3:73706465-73706484 None:intergenic 30.0%
!! CATTATATGGACTGGATTAA+AGG + chr1_3:73706467-73706486 None:intergenic 30.0%
GAAAAAGACATTATATGGAC+TGG + chr1_3:73706475-73706494 None:intergenic 30.0%
! GTCCATATAATGTCTTTTTC+AGG - chr1_3:73706475-73706494 Msa0139810:CDS 30.0%
CTCCTGAAAAAGACATTATA+TGG + chr1_3:73706480-73706499 None:intergenic 30.0%
AAATCAATCATTTGTCCTTG+TGG + chr1_3:73706562-73706581 None:intergenic 30.0%
! TCTCGTAAATTGCTTTGAAT+GGG + chr1_3:73706586-73706605 None:intergenic 30.0%
! TTCTCGTAAATTGCTTTGAA+TGG + chr1_3:73706587-73706606 None:intergenic 30.0%
ATTCAAAGCAATTTACGAGA+AGG - chr1_3:73706586-73706605 Msa0139810:CDS 30.0%
ATTTCTGTAAATACCCGAAA+TGG - chr1_3:73706769-73706788 Msa0139810:CDS 30.0%
! TTTCTGGTATCATTCCATTT+CGG + chr1_3:73706786-73706805 None:intergenic 30.0%
GTAGCAGACGATATATATAT+CGG - chr1_3:73706838-73706857 Msa0139810:CDS 30.0%
!! ACGATATATATATCGGTTCA+CGG - chr1_3:73706845-73706864 Msa0139810:CDS 30.0%
GTCGTTAGAAATCAAGATAT+TGG - chr1_3:73706874-73706893 Msa0139810:CDS 30.0%
ATTATTGCTGGTCAATCTAT+TGG - chr1_3:73707051-73707070 Msa0139810:CDS 30.0%
! TTAAGAACTTTTCATACTGG+TGG - chr1_3:73707096-73707115 Msa0139810:CDS 30.0%
!!! TTTTATTTTTCCATTCGAGG+GGG + chr1_3:73707157-73707176 None:intergenic 30.0%
CATATTTATTCTGACTCAGA+AGG - chr1_3:73707408-73707427 Msa0139810:intron 30.0%
TATACAAAAATTCGGATGCA+TGG + chr1_3:73707461-73707480 None:intergenic 30.0%
AGTCATTTATGGATCTTATC+AGG - chr1_3:73707507-73707526 Msa0139810:intron 30.0%
!!! AATCCATTTTTTACTTCGCA+AGG - chr1_3:73707551-73707570 Msa0139810:intron 30.0%
!! AACATTGATTCTCTTTCTAC+TGG - chr1_3:73707588-73707607 Msa0139810:intron 30.0%
! GACTTTTGGTACAAAAGAAA+AGG - chr1_3:73707677-73707696 Msa0139810:intron 30.0%
! CTTTTGGTACAAAAGAAAAG+GGG - chr1_3:73707679-73707698 Msa0139810:intron 30.0%
TACGGATCATTCTCATTTAA+TGG - chr1_3:73707737-73707756 Msa0139810:intron 30.0%
!! AAAGTATCGTGAAAAATAGC+AGG + chr1_3:73707765-73707784 None:intergenic 30.0%
TCCATTGAAATACCTATCAA+TGG - chr1_3:73707879-73707898 Msa0139810:CDS 30.0%
ACCATTGATAGGTATTTCAA+TGG + chr1_3:73707883-73707902 None:intergenic 30.0%
TACCATTATGGAAGAAGATT+CGG + chr1_3:73708117-73708136 None:intergenic 30.0%
AATCTTCTTCCATAATGGTA+CGG - chr1_3:73708117-73708136 Msa0139810:CDS 30.0%
ACTATTATTCCGTACCATTA+TGG + chr1_3:73708129-73708148 None:intergenic 30.0%
AATAATAGTCTCGTTGGAAT+AGG - chr1_3:73708140-73708159 Msa0139810:CDS 30.0%
TTCAATATAAGAAGTCGAGT+AGG - chr1_3:73708176-73708195 Msa0139810:CDS 30.0%
!!! CATTTTTTTTTTACCGTTCC+GGG + chr1_3:73708320-73708339 None:intergenic 30.0%
!!! CCATTTTTTTTTTACCGTTC+CGG + chr1_3:73708321-73708340 None:intergenic 30.0%
ATAATTGGATCTATGTCCAA+TGG - chr1_3:73708359-73708378 Msa0139810:CDS 30.0%
TTTACAAAATCGATACTGTC+CGG + chr1_3:73708445-73708464 None:intergenic 30.0%
ATGGAAATGGAAAATCCATT+CGG - chr1_3:73708533-73708552 Msa0139810:CDS 30.0%
AACTAATTGAATCCTTGTGT+CGG + chr1_3:73708566-73708585 None:intergenic 30.0%
ACACAAGGATTCAATTAGTT+CGG - chr1_3:73708566-73708585 Msa0139810:CDS 30.0%
!! GACTTGTTTAGTCTTGAATT+GGG - chr1_3:73708588-73708607 Msa0139810:CDS 30.0%
!! AAAAAGTACTTCTATTGAGG+AGG - chr1_3:73708621-73708640 Msa0139810:CDS 30.0%
GTTTGTACTTACTTCAACAA+AGG + chr1_3:73708656-73708675 None:intergenic 30.0%
AAATCACTTAGCCAAAATCA+CGG - chr1_3:73708837-73708856 Msa0139810:CDS 30.0%
AGGATGGAAAATTAGTTATC+GGG + chr1_3:73709051-73709070 None:intergenic 30.0%
GAGGATGGAAAATTAGTTAT+CGG + chr1_3:73709052-73709071 None:intergenic 30.0%
TTGGATAGGATCCAATAAGA+TGG + chr1_3:73704263-73704282 None:intergenic 35.0%
GGATACTGTATTTCCAAGAT+TGG + chr1_3:73704359-73704378 None:intergenic 35.0%
CTTGAGTAGCAAAAAAGAGT+GGG + chr1_3:73704380-73704399 None:intergenic 35.0%
ACGAGAACAATTAGTTGATC+TGG - chr1_3:73704449-73704468 Msa0139810:intron 35.0%
ATGGAAAGAATTAGGAGAAG+AGG - chr1_3:73704506-73704525 Msa0139810:intron 35.0%
TGGAAAGAATTAGGAGAAGA+GGG - chr1_3:73704507-73704526 Msa0139810:intron 35.0%
! CCATTCATTTTCATTGTCAG+TGG + chr1_3:73704535-73704554 None:intergenic 35.0%
CCACTGACAATGAAAATGAA+TGG - chr1_3:73704532-73704551 Msa0139810:intron 35.0%
AGACATAAAACCATCCATTC+TGG + chr1_3:73704642-73704661 None:intergenic 35.0%
TGAATAATCGGTCTCAATTC+GGG + chr1_3:73704681-73704700 None:intergenic 35.0%
CCGATTATTCAAATAGATGG+AGG - chr1_3:73704690-73704709 Msa0139810:CDS 35.0%
! ATTATCAAGGAGTGTATCCA+CGG + chr1_3:73704853-73704872 None:intergenic 35.0%
AGATATAATTGAGGGCAAAG+AGG - chr1_3:73704929-73704948 Msa0139810:intron 35.0%
GATATAATTGAGGGCAAAGA+GGG - chr1_3:73704930-73704949 Msa0139810:intron 35.0%
!! GGAAAACGAGTTGATTATTC+GGG - chr1_3:73704975-73704994 Msa0139810:intron 35.0%
!! GAAAACGAGTTGATTATTCG+GGG - chr1_3:73704976-73704995 Msa0139810:intron 35.0%
CATCGATGTAATGAAAGTGA+TGG + chr1_3:73705023-73705042 None:intergenic 35.0%
TCACTTTCATTACATCGATG+TGG - chr1_3:73705023-73705042 Msa0139810:intron 35.0%
!! ATAGCTCTATTGCTATTTCG+CGG + chr1_3:73705055-73705074 None:intergenic 35.0%
GGAAAAAGAACCGATTGTAT+GGG - chr1_3:73705151-73705170 Msa0139810:intron 35.0%
ATACTTCAAGAAGTTATGCG+GGG - chr1_3:73705176-73705195 Msa0139810:intron 35.0%
TTGAATCCCTTACACACTAA+TGG + chr1_3:73705299-73705318 None:intergenic 35.0%
GATTCAATGCAGACTTTGAT+GGG - chr1_3:73705312-73705331 Msa0139810:CDS 35.0%
ATTCAATGCAGACTTTGATG+GGG - chr1_3:73705313-73705332 Msa0139810:CDS 35.0%
TGTTCATGTGCCTTTATCTT+TGG - chr1_3:73705346-73705365 Msa0139810:CDS 35.0%
!! AAGCATATCTTGAGTTGGTA+CGG + chr1_3:73705447-73705466 None:intergenic 35.0%
CCTATAAGCATATCTTGAGT+TGG + chr1_3:73705452-73705471 None:intergenic 35.0%
CCAACTCAAGATATGCTTAT+AGG - chr1_3:73705449-73705468 Msa0139810:CDS 35.0%
GGCCTTTATGTATTAACTAG+CGG - chr1_3:73705470-73705489 Msa0139810:CDS 35.0%
TGCAATTCCTATGATGCAAT+TGG - chr1_3:73705608-73705627 Msa0139810:CDS 35.0%
ATAAGCTCCAATTGCATCAT+AGG + chr1_3:73705618-73705637 None:intergenic 35.0%
GATTCATAGTGAACTTCGAT+AGG + chr1_3:73705722-73705741 None:intergenic 35.0%
! TTTTCTCGAGCCTATTCATA+TGG - chr1_3:73705878-73705897 Msa0139810:CDS 35.0%
TATGATACTGGCGTAAATTC+AGG - chr1_3:73705953-73705972 Msa0139810:CDS 35.0%
GTCTTTCACAATAACGTGAT+AGG - chr1_3:73706115-73706134 Msa0139810:CDS 35.0%
TTTCACAATAACGTGATAGG+TGG - chr1_3:73706118-73706137 Msa0139810:CDS 35.0%
ATGTATATGCCATTCCGAAA+TGG + chr1_3:73706180-73706199 None:intergenic 35.0%
TGGATCAAGTAAAGACTCTA+GGG - chr1_3:73706209-73706228 Msa0139810:CDS 35.0%
!! AACTTTGTTGTTCAGCATCT+TGG + chr1_3:73706312-73706331 None:intergenic 35.0%
TACGCCAATCCATTGAAATA+TGG - chr1_3:73706383-73706402 Msa0139810:CDS 35.0%
TTCTGGTATCATTCCATTTC+GGG + chr1_3:73706785-73706804 None:intergenic 35.0%
AAGGGGGTTCGAATAAATAT+TGG + chr1_3:73706940-73706959 None:intergenic 35.0%
CTTAATGTTAGTTGAGTTCC+CGG + chr1_3:73707081-73707100 None:intergenic 35.0%
GATCCTTGCGAAGTAAAAAA+TGG + chr1_3:73707557-73707576 None:intergenic 35.0%
TCTTTCCTTCTTGAATCGAT+TGG + chr1_3:73707833-73707852 None:intergenic 35.0%
ATTTCAATGGAAACACCAGA+AGG + chr1_3:73707870-73707889 None:intergenic 35.0%
GAATTCTGTCTTCTGTATTG+AGG + chr1_3:73707945-73707964 None:intergenic 35.0%
CAATACAGAAGACAGAATTC+AGG - chr1_3:73707945-73707964 Msa0139810:CDS 35.0%
! GAAGATTTCATTGAGTATCG+AGG - chr1_3:73708014-73708033 Msa0139810:CDS 35.0%
GGTAAAATATGCACTTCTTC+GGG + chr1_3:73708095-73708114 None:intergenic 35.0%
GGGTAAAATATGCACTTCTT+CGG + chr1_3:73708096-73708115 None:intergenic 35.0%
ACCATTATGGAAGAAGATTC+GGG + chr1_3:73708116-73708135 None:intergenic 35.0%
AATATAAGAAGTCGAGTAGG+CGG - chr1_3:73708179-73708198 Msa0139810:CDS 35.0%
! TCTGGAAATATCCATTTTCC+CGG - chr1_3:73708251-73708270 Msa0139810:CDS 35.0%
TATCAAGATAGAACTGTGTC+GGG + chr1_3:73708294-73708313 None:intergenic 35.0%
GTATCAAGATAGAACTGTGT+CGG + chr1_3:73708295-73708314 None:intergenic 35.0%
CCGGAACGGTAAAAAAAAAA+TGG - chr1_3:73708318-73708337 Msa0139810:CDS 35.0%
TCTTTCCTGGAATAGATCTT+GGG + chr1_3:73708476-73708495 None:intergenic 35.0%
ATTCCAGGAAAGAGATAATC+TGG - chr1_3:73708483-73708502 Msa0139810:CDS 35.0%
TGGAAATGGAAAATCCATTC+GGG - chr1_3:73708534-73708553 Msa0139810:CDS 35.0%
!! GGACTTGTTTAGTCTTGAAT+TGG - chr1_3:73708587-73708606 Msa0139810:CDS 35.0%
!! TTAGTCTTGAATTGGGATCA+AGG - chr1_3:73708595-73708614 Msa0139810:CDS 35.0%
TTACTTCAACAAAGGAAGAG+GGG + chr1_3:73708648-73708667 None:intergenic 35.0%
CTTACTTCAACAAAGGAAGA+GGG + chr1_3:73708649-73708668 None:intergenic 35.0%
ACTTACTTCAACAAAGGAAG+AGG + chr1_3:73708650-73708669 None:intergenic 35.0%
AGAAAAAGAAATGACCCATC+TGG - chr1_3:73708733-73708752 Msa0139810:CDS 35.0%
ATTGATCGCGGATAATGAAT+CGG - chr1_3:73708762-73708781 Msa0139810:CDS 35.0%
! TACGAATAGTTCCGTGATTT+TGG + chr1_3:73708851-73708870 None:intergenic 35.0%
GATGGAAAATTAGTTATCGG+GGG + chr1_3:73709049-73709068 None:intergenic 35.0%
GGATGGAAAATTAGTTATCG+GGG + chr1_3:73709050-73709069 None:intergenic 35.0%
ATAAGATCGGATATTTGAGG+AGG + chr1_3:73709074-73709093 None:intergenic 35.0%
GGCCTAGCAAACGAAAAATT+TGG + chr1_3:73704282-73704301 None:intergenic 40.0%
CCTCGTAATCGTAAGAAAGT+AGG + chr1_3:73704318-73704337 None:intergenic 40.0%
CCTACTTTCTTACGATTACG+AGG - chr1_3:73704315-73704334 Msa0139810:intron 40.0%
CCTTGAGTAGCAAAAAAGAG+TGG + chr1_3:73704381-73704400 None:intergenic 40.0%
!!! CCACTCTTTTTTGCTACTCA+AGG - chr1_3:73704378-73704397 Msa0139810:intron 40.0%
!! AGAGAAATTTCTAGTGGAGC+AGG - chr1_3:73704420-73704439 Msa0139810:intron 40.0%
! TGGATTCTTCGTTGGTAGAA+TGG - chr1_3:73704487-73704506 Msa0139810:intron 40.0%
GAATGGGAAGATCGAAAAGT+AGG - chr1_3:73704549-73704568 Msa0139810:intron 40.0%
!!! GAATTTTTTGGTTCGACGCA+TGG - chr1_3:73704581-73704600 Msa0139810:intron 40.0%
TGGAGGGAAACTAATGAGTT+CGG - chr1_3:73704707-73704726 Msa0139810:CDS 40.0%
ACAACAAGTAGATCTACACC+AGG - chr1_3:73704789-73704808 Msa0139810:CDS 40.0%
CAACAAGTAGATCTACACCA+GGG - chr1_3:73704790-73704809 Msa0139810:CDS 40.0%
AACAAGTAGATCTACACCAG+GGG - chr1_3:73704791-73704810 Msa0139810:CDS 40.0%
TGACACATTACTAATTCCCC+TGG + chr1_3:73704810-73704829 None:intergenic 40.0%
AAAATTGGTACAAGAAGCCG+TGG - chr1_3:73704833-73704852 Msa0139810:intron 40.0%
GTGGATACACTCCTTGATAA+TGG - chr1_3:73704852-73704871 Msa0139810:intron 40.0%
TTATTATGACCGTCCCTCAT+TGG + chr1_3:73704891-73704910 None:intergenic 40.0%
!! TAGCTCTATTGCTATTTCGC+GGG + chr1_3:73705054-73705073 None:intergenic 40.0%
GGGAAAAAGAACCGATTGTA+TGG - chr1_3:73705150-73705169 Msa0139810:intron 40.0%
TACTTCAAGAAGTTATGCGG+GGG - chr1_3:73705177-73705196 Msa0139810:intron 40.0%
ATGCCCAATCTATGCAAAGT+AGG + chr1_3:73705227-73705246 None:intergenic 40.0%
TTTGCATAGATTGGGCATAC+AGG - chr1_3:73705229-73705248 Msa0139810:CDS 40.0%
GCACGTCCTTCTACTAAAAT+AGG + chr1_3:73705263-73705282 None:intergenic 40.0%
GGATTCAATGCAGACTTTGA+TGG - chr1_3:73705311-73705330 Msa0139810:CDS 40.0%
AGACTTTGATGGGGATCAAA+TGG - chr1_3:73705322-73705341 Msa0139810:CDS 40.0%
TCATGTGCCTTTATCTTTGG+AGG - chr1_3:73705349-73705368 Msa0139810:CDS 40.0%
TCATACAAACCTCTTGTCTC+CGG - chr1_3:73705403-73705422 Msa0139810:CDS 40.0%
!! TCTTGAGTTGGTACGGAAAT+GGG + chr1_3:73705440-73705459 None:intergenic 40.0%
!! ATCTTGAGTTGGTACGGAAA+TGG + chr1_3:73705441-73705460 None:intergenic 40.0%
!! GTTAGTGTTGATATCCAGCT+AGG - chr1_3:73705919-73705938 Msa0139810:CDS 40.0%
ATATTCCACTCAGTGGGATT+CGG + chr1_3:73706064-73706083 None:intergenic 40.0%
!! GTGGAATATGGAGGTACTTA+TGG - chr1_3:73706075-73706094 Msa0139810:CDS 40.0%
CTAGAGTCTTTACTTGATCC+AGG + chr1_3:73706210-73706229 None:intergenic 40.0%
CTGGATCAAGTAAAGACTCT+AGG - chr1_3:73706208-73706227 Msa0139810:CDS 40.0%
TAGATGTAGCAGTAGCTTGA+CGG + chr1_3:73706237-73706256 None:intergenic 40.0%
TCAGTATGGGAATGTACATG+CGG - chr1_3:73706351-73706370 Msa0139810:CDS 40.0%
GGGTCAGTCATCCTAAAATT+AGG + chr1_3:73706445-73706464 None:intergenic 40.0%
!!! ATGTCTTTTTCAGGAGCTAG+AGG - chr1_3:73706484-73706503 Msa0139810:CDS 40.0%
TCTCAAGTGCACCAATTAGT+CGG - chr1_3:73706514-73706533 Msa0139810:CDS 40.0%
ATCCTCTCATTCCGACTAAT+TGG + chr1_3:73706528-73706547 None:intergenic 40.0%
GGATTAATGTCAGATCCACA+AGG - chr1_3:73706544-73706563 Msa0139810:CDS 40.0%
ACGTATTCCTACAGGTAAAG+GGG + chr1_3:73706957-73706976 None:intergenic 40.0%
GACGTATTCCTACAGGTAAA+GGG + chr1_3:73706958-73706977 None:intergenic 40.0%
AGACGTATTCCTACAGGTAA+AGG + chr1_3:73706959-73706978 None:intergenic 40.0%
TTACCTGTAGGAATACGTCT+TGG - chr1_3:73706959-73706978 Msa0139810:CDS 40.0%
GAAGCTGTAGGTATTATTGC+TGG - chr1_3:73707039-73707058 Msa0139810:CDS 40.0%
! ATACTGGTGGAGTATTCACA+GGG - chr1_3:73707109-73707128 Msa0139810:CDS 40.0%
! TAAAAGTATATGTTCCCGCG+CGG + chr1_3:73707365-73707384 None:intergenic 40.0%
CCTTCTTGAATCGATTGGAA+TGG + chr1_3:73707828-73707847 None:intergenic 40.0%
! CCATTCCAATCGATTCAAGA+AGG - chr1_3:73707825-73707844 Msa0139810:intron 40.0%
ACCCGAATCTTCTTCCATAA+TGG - chr1_3:73708112-73708131 Msa0139810:CDS 40.0%
GTACGGAATAATAGTCTCGT+TGG - chr1_3:73708134-73708153 Msa0139810:CDS 40.0%
AGTTCTATCTTGATACCACC+CGG - chr1_3:73708299-73708318 Msa0139810:CDS 40.0%
!!! TTTTTTTTTACCGTTCCGGG+TGG + chr1_3:73708317-73708336 None:intergenic 40.0%
! TCTTGGTAGTTGTGATCCAT+TGG + chr1_3:73708378-73708397 None:intergenic 40.0%
! TTTTCCCCAAGATCTATTCC+AGG - chr1_3:73708468-73708487 Msa0139810:CDS 40.0%
CTTTCCTGGAATAGATCTTG+GGG + chr1_3:73708475-73708494 None:intergenic 40.0%
CTCTTTCCTGGAATAGATCT+TGG + chr1_3:73708477-73708496 None:intergenic 40.0%
GTTCCAGATTATCTCTTTCC+TGG + chr1_3:73708489-73708508 None:intergenic 40.0%
GGAAATGGAAAATCCATTCG+GGG - chr1_3:73708535-73708554 Msa0139810:CDS 40.0%
TACTTCAACAAAGGAAGAGG+GGG + chr1_3:73708647-73708666 None:intergenic 40.0%
! AGAAATGACCCATCTGGTTT+AGG - chr1_3:73708739-73708758 Msa0139810:CDS 40.0%
CGATCAATCCTAAACCAGAT+GGG + chr1_3:73708750-73708769 None:intergenic 40.0%
! ATCTGGTTTAGGATTGATCG+CGG - chr1_3:73708750-73708769 Msa0139810:CDS 40.0%
GAAATAAGGAATGCCGATCT+TGG - chr1_3:73708883-73708902 Msa0139810:CDS 40.0%
! CCTTTGAAAATCGGACGTGA+GGG + chr1_3:73704233-73704252 None:intergenic 45.0%
! CCTCACGTCCGATTTTCAAA+GGG - chr1_3:73704231-73704250 Msa0139810:intron 45.0%
! CTCACGTCCGATTTTCAAAG+GGG - chr1_3:73704232-73704251 Msa0139810:intron 45.0%
! TCACGTCCGATTTTCAAAGG+GGG - chr1_3:73704233-73704252 Msa0139810:intron 45.0%
! GGATCTCCCCCTTTGAAAAT+CGG + chr1_3:73704242-73704261 None:intergenic 45.0%
AAGGGGGAGATCCATCTTAT+TGG - chr1_3:73704249-73704268 Msa0139810:intron 45.0%
ATAATCGGTCTCAATTCGGG+AGG + chr1_3:73704678-73704697 None:intergenic 45.0%
!! CTCCTTGATAATGGAATCCG+CGG - chr1_3:73704861-73704880 Msa0139810:intron 45.0%
AGATTTCGAGAGACTCTGCT+TGG - chr1_3:73704954-73704973 Msa0139810:intron 45.0%
!! AGCTCTATTGCTATTTCGCG+GGG + chr1_3:73705053-73705072 None:intergenic 45.0%
AGCGCCTACTTTGCATAGAT+TGG - chr1_3:73705220-73705239 Msa0139810:CDS 45.0%
GCGCCTACTTTGCATAGATT+GGG - chr1_3:73705221-73705240 Msa0139810:CDS 45.0%
GCTTGAGCCTCCAAAGATAA+AGG + chr1_3:73705359-73705378 None:intergenic 45.0%
TTAACTAGCGGAAATCGTCG+AGG - chr1_3:73705482-73705501 Msa0139810:CDS 45.0%
! GTCGAGGTATTTGTGCAAAC+AGG - chr1_3:73705498-73705517 Msa0139810:CDS 45.0%
!!! TCGATAGTCCTTTTTGGCTC+CGG - chr1_3:73705657-73705676 Msa0139810:CDS 45.0%
! TGCATTGATCTATTCGCCAC+CGG + chr1_3:73705679-73705698 None:intergenic 45.0%
GAATCCCACTGAGTGGAATA+TGG - chr1_3:73706063-73706082 Msa0139810:CDS 45.0%
ACCTCCATATTCCACTCAGT+GGG + chr1_3:73706070-73706089 None:intergenic 45.0%
TACCTCCATATTCCACTCAG+TGG + chr1_3:73706071-73706090 None:intergenic 45.0%
!! TGGAGGTACTTATGGCAGAA+CGG - chr1_3:73706083-73706102 Msa0139810:CDS 45.0%
GGCATATACATCACACATCC+TGG - chr1_3:73706189-73706208 Msa0139810:CDS 45.0%
!! TGGACTAGCCATCCTTTAGA+AGG + chr1_3:73706292-73706311 None:intergenic 45.0%
CACCAATTAGTCGGAATGAG+AGG - chr1_3:73706523-73706542 Msa0139810:CDS 45.0%
AGTATCCACAACCCCTTTAC+GGG + chr1_3:73706650-73706669 None:intergenic 45.0%
CAGTATCCACAACCCCTTTA+CGG + chr1_3:73706651-73706670 None:intergenic 45.0%
!! TACACGTCGACTTGTTGAAG+TGG - chr1_3:73706699-73706718 Msa0139810:CDS 45.0%
GTTGTACGTCGAACAGATTG+CGG - chr1_3:73706733-73706752 Msa0139810:CDS 45.0%
CGTATTCCTACAGGTAAAGG+GGG + chr1_3:73706956-73706975 None:intergenic 45.0%
GATCCAAGACGTATTCCTAC+AGG + chr1_3:73706965-73706984 None:intergenic 45.0%
! TGGATCTGCCGATTGTGTTA+TGG - chr1_3:73706979-73706998 Msa0139810:CDS 45.0%
! GGATCTGCCGATTGTGTTAT+GGG - chr1_3:73706980-73706999 Msa0139810:CDS 45.0%
GTAGAATTGGGAGAAGCTGT+AGG - chr1_3:73707027-73707046 Msa0139810:CDS 45.0%
TGGTCAATCTATTGGCGAAC+CGG - chr1_3:73707059-73707078 Msa0139810:CDS 45.0%
! CATACTGGTGGAGTATTCAC+AGG - chr1_3:73707108-73707127 Msa0139810:CDS 45.0%
! TACTGGTGGAGTATTCACAG+GGG - chr1_3:73707110-73707129 Msa0139810:CDS 45.0%
ATCCATGACGTGTACGTGTA+GGG + chr1_3:73707200-73707219 None:intergenic 45.0%
TATCCATGACGTGTACGTGT+AGG + chr1_3:73707201-73707220 None:intergenic 45.0%
ACTCAGAAGGCGAAATGCAT+TGG - chr1_3:73707421-73707440 Msa0139810:intron 45.0%
TTCGGATGCATGGTACACAT+CGG + chr1_3:73707451-73707470 None:intergenic 45.0%
TCTTATCAGGAAAGTCGTGC+AGG - chr1_3:73707520-73707539 Msa0139810:intron 45.0%
AACGAACTAATGCGACCTTC+TGG - chr1_3:73707852-73707871 Msa0139810:CDS 45.0%
! ATATCCATTTTCCCGGAGAG+AGG - chr1_3:73708258-73708277 Msa0139810:CDS 45.0%
! TATCCATTTTCCCGGAGAGA+GGG - chr1_3:73708259-73708278 Msa0139810:CDS 45.0%
GATATCTTATCCCTCTCTCC+GGG + chr1_3:73708272-73708291 None:intergenic 45.0%
GGATATCTTATCCCTCTCTC+CGG + chr1_3:73708273-73708292 None:intergenic 45.0%
TATCTTGATACCACCCGGAA+CGG - chr1_3:73708304-73708323 Msa0139810:CDS 45.0%
GCGATCAATCCTAAACCAGA+TGG + chr1_3:73708751-73708770 None:intergenic 45.0%
TCGCGGATAATGAATCGGAT+CGG - chr1_3:73708767-73708786 Msa0139810:CDS 45.0%
AGATCGGATATTTGAGGAGG+AGG + chr1_3:73709071-73709090 None:intergenic 45.0%
! CCCTCACGTCCGATTTTCAA+AGG - chr1_3:73704230-73704249 Msa0139810:intron 50.0%
! CCCTTTGAAAATCGGACGTG+AGG + chr1_3:73704234-73704253 None:intergenic 50.0%
CTCAATTCGGGAGGAAGAAC+TGG + chr1_3:73704669-73704688 None:intergenic 50.0%
GTCCGCGGATTCCATTATCA+AGG + chr1_3:73704866-73704885 None:intergenic 50.0%
AATCCGCGGACAACCAATGA+GGG - chr1_3:73704875-73704894 Msa0139810:intron 50.0%
GGGCGTTCTGTTATTGTCGT+AGG - chr1_3:73704996-73705015 Msa0139810:intron 50.0%
GGCGCTCTATTCAGCAATAC+TGG + chr1_3:73705206-73705225 None:intergenic 50.0%
AACCTCTTGTCTCCGGCTAT+TGG - chr1_3:73705410-73705429 Msa0139810:CDS 50.0%
ACCTCTTGTCTCCGGCTATT+GGG - chr1_3:73705411-73705430 Msa0139810:CDS 50.0%
GAAATGGGATCCCCAATAGC+CGG + chr1_3:73705425-73705444 None:intergenic 50.0%
!!! ATAGTCCTTTTTGGCTCCGG+TGG - chr1_3:73705660-73705679 Msa0139810:CDS 50.0%
TCCCACTGAGTGGAATATGG+AGG - chr1_3:73706066-73706085 Msa0139810:CDS 50.0%
!! GGAGGTACTTATGGCAGAAC+GGG - chr1_3:73706084-73706103 Msa0139810:CDS 50.0%
GCTGTACGAACATCAGATGC+TGG - chr1_3:73706670-73706689 Msa0139810:CDS 50.0%
ACAGATTGCGGTACGATTCG+CGG - chr1_3:73706745-73706764 Msa0139810:CDS 50.0%
TTCGAACCCCCTTTACCTGT+AGG - chr1_3:73706947-73706966 Msa0139810:CDS 50.0%
! TCTGCCGATTGTGTTATGGG+CGG - chr1_3:73706983-73707002 Msa0139810:CDS 50.0%
GACTCCGCCCATAACACAAT+CGG + chr1_3:73706990-73707009 None:intergenic 50.0%
TATGGGCGGAGTCCTATTCA+TGG - chr1_3:73706997-73707016 Msa0139810:CDS 50.0%
ATGGGCGGAGTCCTATTCAT+GGG - chr1_3:73706998-73707017 Msa0139810:CDS 50.0%
TCTACCAGGTCCCCATGAAT+AGG + chr1_3:73707012-73707031 None:intergenic 50.0%
TCATGGGGACCTGGTAGAAT+TGG - chr1_3:73707014-73707033 Msa0139810:CDS 50.0%
CATGGGGACCTGGTAGAATT+GGG - chr1_3:73707015-73707034 Msa0139810:CDS 50.0%
CAGCTTCTCCCAATTCTACC+AGG + chr1_3:73707026-73707045 None:intergenic 50.0%
GGTCAATCTATTGGCGAACC+GGG - chr1_3:73707060-73707079 Msa0139810:CDS 50.0%
! ACTGGTGGAGTATTCACAGG+GGG - chr1_3:73707111-73707130 Msa0139810:CDS 50.0%
!! AGTATTCACAGGGGGTACTG+CGG - chr1_3:73707119-73707138 Msa0139810:CDS 50.0%
AAGAAGTCGAGTAGGCGGAT+TGG - chr1_3:73708184-73708203 Msa0139810:CDS 50.0%
TATCCCTCTCTCCGGGAAAA+TGG + chr1_3:73708265-73708284 None:intergenic 50.0%
TGTGTCGGAAATTCCCCGAA+TGG + chr1_3:73708551-73708570 None:intergenic 50.0%
TTCGGGGAATTTCCGACACA+AGG - chr1_3:73708551-73708570 Msa0139810:CDS 50.0%
CGGATATTTGAGGAGGAGGA+TGG + chr1_3:73709067-73709086 None:intergenic 50.0%
GAATCCGCGGACAACCAATG+AGG - chr1_3:73704874-73704893 Msa0139810:intron 55.0%
CCTCTTGTCTCCGGCTATTG+GGG - chr1_3:73705412-73705431 Msa0139810:CDS 55.0%
ATTCGCCACCGGAGCCAAAA+AGG + chr1_3:73705668-73705687 None:intergenic 55.0%
TCGAACCGAATCCCACTGAG+TGG - chr1_3:73706056-73706075 Msa0139810:CDS 55.0%
TCTTGCTACGGAGCCCGTAA+AGG - chr1_3:73706634-73706653 Msa0139810:CDS 55.0%
CTTGCTACGGAGCCCGTAAA+GGG - chr1_3:73706635-73706654 Msa0139810:CDS 55.0%
TTGCTACGGAGCCCGTAAAG+GGG - chr1_3:73706636-73706655 Msa0139810:CDS 55.0%
CAGATTGCGGTACGATTCGC+GGG - chr1_3:73706746-73706765 Msa0139810:CDS 55.0%
TGGGCGGAGTCCTATTCATG+GGG - chr1_3:73706999-73707018 Msa0139810:CDS 55.0%
GAGTCCTATTCATGGGGACC+TGG - chr1_3:73707005-73707024 Msa0139810:CDS 55.0%
CACCCTACACGTACACGTCA+TGG - chr1_3:73707195-73707214 Msa0139810:intron 55.0%
AGTGATTGCTGAGATCCGCG+CGG - chr1_3:73707347-73707366 Msa0139810:intron 55.0%
! CGTCCCTCATTGGTTGTCCG+CGG + chr1_3:73704881-73704900 None:intergenic 60.0%
CGCGGACAACCAATGAGGGA+CGG - chr1_3:73704879-73704898 Msa0139810:intron 60.0%
CCCCAATAGCCGGAGACAAG+AGG + chr1_3:73705415-73705434 None:intergenic 60.0%
TATGTGCGAGCCCCCTCGAA+TGG - chr1_3:73707144-73707163 Msa0139810:CDS 60.0%
GTGATTGCTGAGATCCGCGC+GGG - chr1_3:73707348-73707367 Msa0139810:intron 60.0%
CGGAGCCCGTAAAGGGGTTG+TGG - chr1_3:73706642-73706661 Msa0139810:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 73704219 73709122 73704219 ID=Msa0139810;Name=Msa0139810
chr1_3 mRNA 73704219 73709122 73704219 ID=Msa0139810-mRNA-1;Parent=Msa0139810;Name=Msa0139810-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0|0.75|1|1|4|0|1158
chr1_3 exon 73707838 73709122 73707838 ID=Msa0139810-mRNA-1:exon:25667;Parent=Msa0139810-mRNA-1
chr1_3 exon 73705208 73707204 73705208 ID=Msa0139810-mRNA-1:exon:25666;Parent=Msa0139810-mRNA-1
chr1_3 exon 73704678 73704851 73704678 ID=Msa0139810-mRNA-1:exon:25665;Parent=Msa0139810-mRNA-1
chr1_3 exon 73704219 73704239 73704219 ID=Msa0139810-mRNA-1:exon:25664;Parent=Msa0139810-mRNA-1
chr1_3 CDS 73707838 73709122 73707838 ID=Msa0139810-mRNA-1:cds;Parent=Msa0139810-mRNA-1
chr1_3 CDS 73705208 73707204 73705208 ID=Msa0139810-mRNA-1:cds;Parent=Msa0139810-mRNA-1
chr1_3 CDS 73704678 73704851 73704678 ID=Msa0139810-mRNA-1:cds;Parent=Msa0139810-mRNA-1
chr1_3 CDS 73704219 73704239 73704219 ID=Msa0139810-mRNA-1:cds;Parent=Msa0139810-mRNA-1
Gene Sequence

>Msa0139810

ATGAGAGGAAACCCTCACGTCCGATTTTCAAAGGGGGAGATCCATCTTATTGGATCCTATCCAAATTTTTCGTTTGCTAGGCCCGTAGTTAAAAAACCTACTTTCTTACGATTACGAGGTTCATTCGAATATGAAATCCAATCTTGGAAATACAGTATCCCACTCTTTTTTGCTACTCAAGGTTTCGATACATTTCGAAATAGAGAAATTTCTAGTGGAGCAGGTGCTATACGAGAACAATTAGTTGATCTGGATTTAAGAATTATTATGGATTCTTCGTTGGTAGAATGGAAAGAATTAGGAGAAGAGGGATCCACTGACAATGAAAATGAATGGGAAGATCGAAAAGTAGGAAGAAGAAAGAATTTTTTGGTTCGACGCATGGAATTAGCTAAGCACTTTATCCGAACAAATATAGAACCAGAATGGATGGTTTTATGTCTCTTACCAGTTCTTCCTCCCGAATTGAGACCGATTATTCAAATAGATGGAGGGAAACTAATGAGTTCGGATATTAATGAACTCTATAGAAGAGTTATCTATCGGAACAATACTCTTATTGACCTATTAACAACAAGTAGATCTACACCAGGGGAATTAGTAATGTGTCAAGAAAAATTGGTACAAGAAGCCGTGGATACACTCCTTGATAATGGAATCCGCGGACAACCAATGAGGGACGGTCATAATAAAGTTTACAAATCGTTTTCAGATATAATTGAGGGCAAAGAGGGAAGATTTCGAGAGACTCTGCTTGGAAAACGAGTTGATTATTCGGGGCGTTCTGTTATTGTCGTAGGTCCATCACTTTCATTACATCGATGTGGATTGCCCCGCGAAATAGCAATAGAGCTATTTCAGACATTTCTAATTCGTGGTTTAATTCGAAAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATACGGGAAAAAGAACCGATTGTATGGGAAATACTTCAAGAAGTTATGCGGGGGCATCCAGTATTGCTGAATAGAGCGCCTACTTTGCATAGATTGGGCATACAGGCATTTCAACCTATTTTAGTAGAAGGACGTGCTATTTGTTTACATCCATTAGTGTGTAAGGGATTCAATGCAGACTTTGATGGGGATCAAATGGCTGTTCATGTGCCTTTATCTTTGGAGGCTCAAGCAGAAGCTCGTTTACTTATGTTTTCTCATACAAACCTCTTGTCTCCGGCTATTGGGGATCCCATTTCCGTACCAACTCAAGATATGCTTATAGGCCTTTATGTATTAACTAGCGGAAATCGTCGAGGTGGAACTGCCATTAAACGACTTATTAGCAGATTAATAGACCATTTCGGAATGGCATATACATCACACATCCTGGATCAAGTAAAGACTCTAGGGTTCCGTCAAGCTACTGCTACATCTATTTCATTAGGAATTGATGATCTTTTAACAATACCTTCTAAAGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTCTATTTTGGAAAAACATAATCAGTATGGGAATGTACATGCGGTAGAAAAATTACGCCAATCCATTGAAATATGGTATGCTACAAGCGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACTGACCCCTTTAATCCAGTCCATATAATGTCTTTTTCAGGAGCTAGAGGAAATGCATCTCAAGTGCACCAATTAGTCGGAATGAGAGGATTAATGTCAGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGAGAAGGACTGTCTTTAACAGAATATATAATTTCTTGCTACGGAGCCCGTAAAGGGGTTGTGGATACTGCTGTACGAACATCAGATGCTGGATATCTTACACGTCGACTTGTTGAAGTGGTTCAACACATTGTTGTACGTCGAACAGATTGCGGTACGATTCGCGGGATTTCTGTAAATACCCGAAATGGAATGATACCAGAAAGAATTTTGATACAAACATTAATTGGTCGTGTAGTAGCAGACGATATATATATCGGTTCACGGTGCATTGTCGTTAGAAATCAAGATATTGGAATTGGACTTATCAATCGATTCATAACTTTTCAAACACAACCAATATTTATTCGAACCCCCTTTACCTGTAGGAATACGTCTTGGATCTGCCGATTGTGTTATGGGCGGAGTCCTATTCATGGGGACCTGGTAGAATTGGGAGAAGCTGTAGGTATTATTGCTGGTCAATCTATTGGCGAACCGGGAACTCAACTAACATTAAGAACTTTTCATACTGGTGGAGTATTCACAGGGGGTACTGCGGAATATGTGCGAGCCCCCTCGAATGGAAAAATAAAATTTAATGAAGATTTAGTTCACCCTACACGTACACGTCATGGATATCCTGCTTTTATATGTAATATAGACTTGTATGTAACTATTGAAAGTGACGATATTATACATAACGTGATTATTCCACCAAAAAGTTTTCTATTAGTTCAAAATGATCAATATGTAAAATCAGAACAAGTGATTGCTGAGATCCGCGCGGGAACATATACTTTTAATTTGAAAGAAAGGGTTCGAAAACATATTTATTCTGACTCAGAAGGCGAAATGCATTGGAGTACCGATGTGTACCATGCATCCGAATTTTTGTATAGTAATGTACATATCTTACCAAAAACAAGTCATTTATGGATCTTATCAGGAAAGTCGTGCAGGTCTGATACAATCCATTTTTTACTTCGCAAGGATCAAGATCAAATTAACATTGATTCTCTTTCTACTGGAAAAAGAAATATTTCTAATCTTTTAGTAAGTAATGATGAAGTAAAACGAAAATTATTAAGTTTGAAGACTTTTGGTACAAAAGAAAAGGGGATTAGCAATTATTCAATATTTAATCAAATAATATGTACGGATCATTCTCATTTAATGGATCCTGCTATTTTTCACGATACTTTTTATTTATTGGCCAAAAGACGAAGAAATAGATTTCTTATTCCATTCCAATCGATTCAAGAAGGAAAGAACGAACTAATGCGACCTTCTGGTGTTTCCATTGAAATACCTATCAATGGTATTTTTCATAGAAATAGTATTTTTGCTTATTTCGATGATCCTCAATACAGAAGACAGAATTCAGGAATTACTAAATATAGAACTATAGGAATTCATTCCGTTTTTCAAAAAGAAGATTTCATTGAGTATCGAGGAATCAAAGAATTAAAGCCAAAATACCAAATCAAAGTAGATCGATTTTTTTTTATTCCCGAAGAAGTGCATATTTTACCCGAATCTTCTTCCATAATGGAAAGAGATAATCTGGAACTCAAAGTTGTCAATTATATTCTTTATGGAAATGGAAAATCCATTCGGGGAATTTCCGACACAAGGATTCAATTAGTTCGGACTTGTTTAGTCTTGAATTGGGATCAAGGCAAAAAAAGTACTTCTATTGAGGAGGCCCCCTCTTCCTTTGTTGAAAATCCATTTGAACAGTTATAA
Protein sequence

>Msa0139810

MRGNPHVRFSKGEIHLIGSYPNFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFATQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSTDNENEWEDRKVGRRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRKHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGIDDLLTIPSKGWLVQDAEQQSSILEKHNQYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTRNGMIPERILIQTLIGRVVADDIYIGSRCIVVRNQDIGIGLINRFITFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRAPSNGKIKFNEDLVHPTRTRHGYPAFICNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVIAEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFLYSNVHILPKTSHLWILSGKSCRSDTIHFLLRKDQDQINIDSLSTGKRNISNLLVSNDEVKRKLLSLKTFGTKEKGISNYSIFNQIICTDHSHLMDPAIFHDTFYLLAKRRRNRFLIPFQSIQEGKNELMRPSGVSIEIPINGIFHRNSIFAYFDDPQYRRQNSGITKYRTIGIHSVFQKEDFIEYRGIKELKPKYQIKVDRFFFIPEEVHILPESSSIMERDNLELKVVNYILYGNGKSIRGISDTRIQLVRTCLVLNWDQGKKSTSIEEAPSSFVENPFEQL*