AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0139800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0139800 MtrunA17_CPg0493001 98.060 670 13 0 429 1098 19 688 0.0 1360
Msa0139800 MtrunA17_CPg0493001 64.706 102 30 3 1056 1152 761 861 9.57e-27 119
Msa0139800 MtrunA17_Chr4g0016671 98.060 670 13 0 429 1098 19 688 0.0 1360
Msa0139800 MtrunA17_Chr4g0016671 64.706 102 30 3 1056 1152 761 861 9.57e-27 119
Msa0139800 MtrunA17_Chr3g0108441 98.387 434 5 1 1 432 1 434 0.0 873
Msa0139800 MtrunA17_Chr3g0108491 98.387 434 5 1 1 432 1 434 0.0 872
Msa0139800 MtrunA17_CPg0493021 98.387 434 5 1 1 432 1 434 0.0 872
Msa0139800 MtrunA17_Chr4g0016661 98.387 434 5 1 1 432 1 434 0.0 872
Msa0139800 MtrunA17_Chr4g0015581 88.208 424 7 1 529 952 1 381 0.0 756
Msa0139800 MtrunA17_Chr3g0095741 96.259 294 11 0 805 1098 8 301 0.0 579
Msa0139800 MtrunA17_Chr3g0095741 98.276 58 1 0 1095 1152 416 473 1.02e-27 118
Msa0139800 MtrunA17_Chr8g0342181 60.641 343 60 4 90 432 1 268 3.41e-118 367
Msa0139800 MtrunA17_Chr4g0015551 75.000 212 8 1 116 327 5 171 7.70e-95 300
Msa0139800 MtrunA17_Chr4g0015591 66.403 253 25 4 960 1152 1 253 2.30e-92 311
Msa0139800 MtrunA17_Chr3g0096371 95.652 115 5 0 168 282 1 115 7.46e-69 226
Msa0139800 MtrunA17_Chr4g0002751 82.796 93 16 0 128 220 1 93 8.81e-44 154
Msa0139800 MtrunA17_Chr2g0318321 91.667 60 5 0 426 485 35 94 3.26e-30 115
Msa0139800 MtrunA17_Chr4g0030401 28.247 308 191 6 140 423 248 549 3.63e-29 126
Msa0139800 MtrunA17_Chr4g0030391 28.803 309 188 7 140 423 247 548 5.73e-29 125
Msa0139800 MtrunA17_Chr5g0406121 28.526 312 190 6 141 423 241 548 1.11e-22 105
Msa0139800 MtrunA17_Chr4g0044991 25.949 316 183 7 151 423 317 624 1.90e-19 95.1
Msa0139800 MtrunA17_Chr4g0002761 66.667 54 18 0 375 428 1 54 7.20e-15 70.9
Msa0139800 MtrunA17_Chr4g0015571 94.286 35 2 0 426 460 16 50 1.53e-14 69.3
Msa0139800 MtrunA17_Chr8g0353071 28.053 303 186 10 145 422 211 506 7.87e-12 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0139800 ATCG00170.1 79.083 698 128 4 430 1125 16 697 0.0 1115
Msa0139800 ATCG00170.1 68.966 58 15 1 1095 1152 802 856 6.12e-16 84.0
Msa0139800 ATCG00180.1 91.768 413 32 1 20 432 142 552 0.0 784
Msa0139800 AT5G60040.1 28.710 310 188 5 141 423 250 553 4.63e-28 123
Msa0139800 AT5G60040.2 28.710 310 188 5 141 423 260 563 6.33e-28 123
Msa0139800 AT4G35800.2 28.710 310 192 5 141 423 242 549 1.01e-23 109
Msa0139800 AT4G35800.1 28.710 310 192 5 141 423 242 549 1.01e-23 109
Msa0139800 AT3G57660.2 25.600 375 215 12 151 479 335 691 6.53e-19 94.0
Msa0139800 AT3G57660.2 28.458 253 139 10 540 756 923 1169 7.93e-15 80.5
Msa0139800 AT3G57660.1 25.600 375 215 12 151 479 348 704 6.77e-19 94.0
Msa0139800 AT3G57660.1 28.458 253 139 10 540 756 936 1182 8.22e-15 80.5
Msa0139800 AT1G63020.4 23.577 369 237 11 79 422 152 500 4.37e-14 77.8
Msa0139800 AT1G63020.1 23.577 369 237 11 79 422 152 500 4.52e-14 77.8
Msa0139800 AT1G63020.2 23.577 369 237 11 79 422 152 500 4.52e-14 77.8
Msa0139800 AT1G63020.3 23.577 369 237 11 79 422 152 500 4.59e-14 77.8
Msa0139800 AT1G63020.5 27.604 192 123 3 247 422 1 192 8.41e-13 73.6
Msa0139800 AT2G40030.1 29.016 193 121 3 246 422 310 502 7.71e-11 67.4
Msa0139800 AT2G40030.2 29.016 193 121 3 246 422 310 502 8.30e-11 67.4

Find 231 sgRNAs with CRISPR-Local

Find 373 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTACTTTGATTTGGTATTT+TGG 0.149348 1_3:-73702988 None:intergenic
GTTTGTATCAAAATTCTTTC+TGG 0.155430 1_3:-73701734 None:intergenic
TTCTGGTATCATTCCATTTC+GGG 0.158141 1_3:-73701717 None:intergenic
TGAACAACAAAGTTCTATTT+TGG 0.177929 1_3:+73701253 Msa0139800:CDS
GTTGTCAATTATATTCTTTA+TGG 0.179224 1_3:+73703449 Msa0139800:CDS
TACGGATCATTCTCATTTAA+TGG 0.188994 1_3:+73702672 Msa0139800:CDS
TCTGGATTTAAGAATTATTA+TGG 0.190370 1_3:+73699402 Msa0139800:CDS
TCTGCTAATAAGTCGTTTAA+TGG 0.223864 1_3:-73701081 None:intergenic
ACCTCTTGTCTCCGGCTATT+GGG 0.225839 1_3:+73700346 Msa0139800:CDS
AAATCTATTTCTTCGTCTTT+TGG 0.240397 1_3:-73702731 None:intergenic
ATCCTCTCATTCCGACTAAT+TGG 0.248879 1_3:-73701460 None:intergenic
ACTATTATTCCGTACCATTA+TGG 0.259697 1_3:-73703061 None:intergenic
TGTTCATGTGCCTTTATCTT+TGG 0.264426 1_3:+73700281 Msa0139800:CDS
CCAACTCAAGATATGCTTAT+AGG 0.271742 1_3:+73700384 Msa0139800:CDS
CATTATATGGACTGGATTAA+AGG 0.289410 1_3:-73701399 None:intergenic
AATTATATTCTTTATGGAAA+TGG 0.289554 1_3:+73703455 Msa0139800:CDS
AACCTCTTGTCTCCGGCTAT+TGG 0.290298 1_3:+73700345 Msa0139800:CDS
GCACGTCCTTCTACTAAAAT+AGG 0.292699 1_3:-73700195 None:intergenic
GGATCTGCCGATTGTGTTAT+GGG 0.297223 1_3:+73701915 Msa0139800:CDS
TTTCTGGTATCATTCCATTT+CGG 0.299397 1_3:-73701718 None:intergenic
TAGATCTACTTGTTGTTAAT+AGG 0.299908 1_3:-73699717 None:intergenic
AGTCATTTATGGATCTTATC+AGG 0.301174 1_3:+73702442 Msa0139800:CDS
TGGATCTGCCGATTGTGTTA+TGG 0.301508 1_3:+73701914 Msa0139800:CDS
GGGTCAGTCATCCTAAAATT+AGG 0.301712 1_3:-73701377 None:intergenic
GGACTTGTTTAGTCTTGAAT+TGG 0.302268 1_3:+73703522 Msa0139800:CDS
AGCGCCTACTTTGCATAGAT+TGG 0.308716 1_3:+73700155 Msa0139800:CDS
CCTCCATCTATTTGAATAAT+CGG 0.310599 1_3:-73699625 None:intergenic
TTGGTAGAATGGAAAGAATT+AGG 0.313946 1_3:+73699433 Msa0139800:CDS
TCATGGGGACCTGGTAGAAT+TGG 0.318933 1_3:+73701949 Msa0139800:CDS
AAAATCGATCTACTTTGATT+TGG 0.319610 1_3:-73702996 None:intergenic
ACCCGAATCTTCTTCCATAA+TGG 0.320662 1_3:+73703047 Msa0139800:CDS
TTCTCGTAAATTGCTTTGAA+TGG 0.322270 1_3:-73701519 None:intergenic
TTATTAAGTTTGAAGACTTT+TGG 0.326721 1_3:+73702598 Msa0139800:CDS
TTTACATCCATTAGTGTGTA+AGG 0.327520 1_3:+73700224 Msa0139800:CDS
CAGTATCCACAACCCCTTTA+CGG 0.329838 1_3:-73701583 None:intergenic
AACTTTGTTGTTCAGCATCT+TGG 0.334259 1_3:-73701244 None:intergenic
AGAAATCAAGATATTGGAAT+TGG 0.334567 1_3:+73701815 Msa0139800:CDS
TACGCCAATCCATTGAAATA+TGG 0.339395 1_3:+73701318 Msa0139800:CDS
ATTATTGCTGGTCAATCTAT+TGG 0.340445 1_3:+73701986 Msa0139800:CDS
TTGAATAATCGGTCTCAATT+CGG 0.341142 1_3:-73699614 None:intergenic
GTCGTTAGAAATCAAGATAT+TGG 0.341954 1_3:+73701809 Msa0139800:CDS
GGAAAACGAGTTGATTATTC+GGG 0.350240 1_3:+73699910 Msa0139800:CDS
AGACCGATTATTCAAATAGA+TGG 0.352617 1_3:+73699622 Msa0139800:CDS
ACTGCTACATCTATTTCATT+AGG 0.354727 1_3:+73701179 Msa0139800:CDS
TGGAAAACGAGTTGATTATT+CGG 0.358566 1_3:+73699909 Msa0139800:CDS
ATCTTGAGTTGGTACGGAAA+TGG 0.362284 1_3:-73700373 None:intergenic
GGATACTGTATTTCCAAGAT+TGG 0.364284 1_3:-73699291 None:intergenic
TGAATAATCGGTCTCAATTC+GGG 0.364643 1_3:-73699613 None:intergenic
CTTAATGTTAGTTGAGTTCC+CGG 0.369671 1_3:-73702013 None:intergenic
ATTCCAGGAAAGAGATAATC+TGG 0.369993 1_3:+73703418 Msa0139800:intron
ATTATATGGACTGGATTAAA+GGG 0.370361 1_3:-73701398 None:intergenic
AACATTGATTCTCTTTCTAC+TGG 0.378165 1_3:+73702523 Msa0139800:CDS
GGTAAAATATGCACTTCTTC+GGG 0.379845 1_3:-73703027 None:intergenic
TGGACTAGCCATCCTTTAGA+AGG 0.382153 1_3:-73701224 None:intergenic
TTCCGCTAGTTAATACATAA+AGG 0.382446 1_3:-73700407 None:intergenic
TTGAATCCCTTACACACTAA+TGG 0.385461 1_3:-73700231 None:intergenic
GTGGATACACTCCTTGATAA+TGG 0.387696 1_3:+73699787 Msa0139800:CDS
TACCATTATGGAAGAAGATT+CGG 0.389569 1_3:-73703049 None:intergenic
ATTTCTGTAAATACCCGAAA+TGG 0.389944 1_3:+73701704 Msa0139800:CDS
GGGTAAAATATGCACTTCTT+CGG 0.392587 1_3:-73703028 None:intergenic
TTTCAGACATTTCTAATTCG+TGG 0.395006 1_3:+73700009 Msa0139800:CDS
GACTTGTTTAGTCTTGAATT+GGG 0.395976 1_3:+73703523 Msa0139800:CDS
TGGAAATGGAAAATCCATTC+GGG 0.398927 1_3:+73703469 Msa0139800:CDS
ACGAGAACAATTAGTTGATC+TGG 0.400881 1_3:+73699384 Msa0139800:CDS
GGCGCTCTATTCAGCAATAC+TGG 0.401200 1_3:-73700138 None:intergenic
AGTATCCACAACCCCTTTAC+GGG 0.401249 1_3:-73701582 None:intergenic
AGACATAAAACCATCCATTC+TGG 0.402557 1_3:-73699574 None:intergenic
TGGTCAATCTATTGGCGAAC+CGG 0.405693 1_3:+73701994 Msa0139800:CDS
ATTACTAAATATAGAACTAT+AGG 0.405919 1_3:+73702904 Msa0139800:CDS
TGGATTCTTCGTTGGTAGAA+TGG 0.407733 1_3:+73699422 Msa0139800:CDS
GGATTCAATGCAGACTTTGA+TGG 0.407959 1_3:+73700246 Msa0139800:CDS
TCATGTGCCTTTATCTTTGG+AGG 0.409231 1_3:+73700284 Msa0139800:CDS
CTTGCTACGGAGCCCGTAAA+GGG 0.410011 1_3:+73701570 Msa0139800:CDS
AGCAGATTAATAGACCATTT+CGG 0.411046 1_3:+73701098 Msa0139800:CDS
GCTTGAGCCTCCAAAGATAA+AGG 0.413525 1_3:-73700291 None:intergenic
AACGAACTAATGCGACCTTC+TGG 0.414791 1_3:+73702787 Msa0139800:CDS
TCTTTCCTTCTTGAATCGAT+TGG 0.414961 1_3:-73702765 None:intergenic
TCGAATATGAAATCCAATCT+TGG 0.418713 1_3:+73699278 Msa0139800:CDS
GACGTATTCCTACAGGTAAA+GGG 0.421613 1_3:-73701890 None:intergenic
ACCATTGATAGGTATTTCAA+TGG 0.423769 1_3:-73702815 None:intergenic
GATTCAATGCAGACTTTGAT+GGG 0.425961 1_3:+73700247 Msa0139800:CDS
TCTTGAGTTGGTACGGAAAT+GGG 0.426083 1_3:-73700372 None:intergenic
CTCAATTCGGGAGGAAGAAC+TGG 0.430438 1_3:-73699601 None:intergenic
TCTCGTAAATTGCTTTGAAT+GGG 0.433790 1_3:-73701518 None:intergenic
ATTCTGGTTCTATATTTGTT+CGG 0.435196 1_3:-73699558 None:intergenic
TTATTATGACCGTCCCTCAT+TGG 0.440271 1_3:-73699823 None:intergenic
TCTACCAGGTCCCCATGAAT+AGG 0.440638 1_3:-73701944 None:intergenic
ATGGAAATGGAAAATCCATT+CGG 0.440917 1_3:+73703468 Msa0139800:CDS
CATGGGGACCTGGTAGAATT+GGG 0.442448 1_3:+73701950 Msa0139800:CDS
CATACCATATTTCAATGGAT+TGG 0.443039 1_3:-73701322 None:intergenic
CAATACAGAAGACAGAATTC+AGG 0.444868 1_3:+73702880 Msa0139800:CDS
CAGATTGCGGTACGATTCGC+GGG 0.446348 1_3:+73701681 Msa0139800:CDS
TTTGCATAGATTGGGCATAC+AGG 0.446557 1_3:+73700164 Msa0139800:CDS
TGTAGCATACCATATTTCAA+TGG 0.450731 1_3:-73701327 None:intergenic
CATACTGGTGGAGTATTCAC+AGG 0.451249 1_3:+73702043 Msa0139800:CDS
ACCATTATGGAAGAAGATTC+GGG 0.451336 1_3:-73703048 None:intergenic
TCCATTGAAATACCTATCAA+TGG 0.461052 1_3:+73702814 Msa0139800:CDS
CTGGATCAAGTAAAGACTCT+AGG 0.462436 1_3:+73701143 Msa0139800:CDS
CACTGACAATGAAAATGAAT+GGG 0.463118 1_3:+73699468 Msa0139800:CDS
CTAGAGTCTTTACTTGATCC+AGG 0.463607 1_3:-73701142 None:intergenic
CCACTGACAATGAAAATGAA+TGG 0.464389 1_3:+73699467 Msa0139800:CDS
AGACGTATTCCTACAGGTAA+AGG 0.465006 1_3:-73701891 None:intergenic
TGGAAAGAATTAGGAGAAGA+GGG 0.467304 1_3:+73699442 Msa0139800:CDS
CCTTCTTGAATCGATTGGAA+TGG 0.469170 1_3:-73702760 None:intergenic
ACACAAGGATTCAATTAGTT+CGG 0.470880 1_3:+73703501 Msa0139800:CDS
GTAGCAGACGATATATATAT+CGG 0.471989 1_3:+73701773 Msa0139800:CDS
GAATTCTGTCTTCTGTATTG+AGG 0.475926 1_3:-73702877 None:intergenic
GCGCCTACTTTGCATAGATT+GGG 0.476543 1_3:+73700156 Msa0139800:CDS
TGAAGTATTTCCCATACAAT+CGG 0.477354 1_3:-73700096 None:intergenic
CCTCTTGTCTCCGGCTATTG+GGG 0.480180 1_3:+73700347 Msa0139800:CDS
GGGCGTTCTGTTATTGTCGT+AGG 0.483193 1_3:+73699931 Msa0139800:CDS
AGAGAAATTTCTAGTGGAGC+AGG 0.488408 1_3:+73699355 Msa0139800:CDS
TTAGTCTTGAATTGGGATCA+AGG 0.488756 1_3:+73703530 Msa0139800:CDS
TCTTGCTACGGAGCCCGTAA+AGG 0.490200 1_3:+73701569 Msa0139800:CDS
TGGAGGGAAACTAATGAGTT+CGG 0.494350 1_3:+73699642 Msa0139800:CDS
GGCATATACATCACACATCC+TGG 0.495134 1_3:+73701124 Msa0139800:CDS
TAACAATACCTTCTAAAGGA+TGG 0.495965 1_3:+73701216 Msa0139800:CDS
ACTCAGAAGGCGAAATGCAT+TGG 0.496258 1_3:+73702356 Msa0139800:CDS
CGAAATAGAGAAATTTCTAG+TGG 0.496839 1_3:+73699349 Msa0139800:CDS
TAGCTCTATTGCTATTTCGC+GGG 0.496998 1_3:-73699986 None:intergenic
AATTATTATGGATTCTTCGT+TGG 0.499116 1_3:+73699414 Msa0139800:CDS
GAAGCTGTAGGTATTATTGC+TGG 0.500714 1_3:+73701974 Msa0139800:CDS
TCATACAAACCTCTTGTCTC+CGG 0.506883 1_3:+73700338 Msa0139800:CDS
ATGGGCGGAGTCCTATTCAT+GGG 0.508984 1_3:+73701933 Msa0139800:CDS
GAATGGGAAGATCGAAAAGT+AGG 0.511851 1_3:+73699484 Msa0139800:CDS
GACTCCGCCCATAACACAAT+CGG 0.512450 1_3:-73701922 None:intergenic
CCTCGTAATCGTAAGAAAGT+AGG 0.512515 1_3:-73699250 None:intergenic
CGGAGCCCGTAAAGGGGTTG+TGG 0.513039 1_3:+73701577 Msa0139800:CDS
AAATCAATCATTTGTCCTTG+TGG 0.513235 1_3:-73701494 None:intergenic
ATGGAAAGAATTAGGAGAAG+AGG 0.513927 1_3:+73699441 Msa0139800:CDS
ATAGCTCTATTGCTATTTCG+CGG 0.516257 1_3:-73699987 None:intergenic
TAGATGTAGCAGTAGCTTGA+CGG 0.516966 1_3:-73701169 None:intergenic
TATGGGCGGAGTCCTATTCA+TGG 0.517790 1_3:+73701932 Msa0139800:CDS
GAGTTGCTAAGAGTAAAATA+CGG 0.520079 1_3:+73700064 Msa0139800:CDS
AGATTTCGAGAGACTCTGCT+TGG 0.523467 1_3:+73699889 Msa0139800:CDS
ATGTATATGCCATTCCGAAA+TGG 0.525535 1_3:-73701112 None:intergenic
GGTCAATCTATTGGCGAACC+GGG 0.527123 1_3:+73701995 Msa0139800:CDS
AGACTTTGATGGGGATCAAA+TGG 0.531054 1_3:+73700257 Msa0139800:CDS
ACAGATTGCGGTACGATTCG+CGG 0.531220 1_3:+73701680 Msa0139800:CDS
GTCCGCGGATTCCATTATCA+AGG 0.532137 1_3:-73699798 None:intergenic
CCTATAAGCATATCTTGAGT+TGG 0.532621 1_3:-73700384 None:intergenic
ATTTAATCAAATAATATGTA+CGG 0.533241 1_3:+73702654 Msa0139800:CDS
TTGGATAGGATCCAATAAGA+TGG 0.534215 1_3:-73699195 None:intergenic
GAATATATAATTTCTTGCTA+CGG 0.534554 1_3:+73701557 Msa0139800:CDS
ATCCATGACGTGTACGTGTA+GGG 0.535056 1_3:-73702132 None:intergenic
CAGCTTCTCCCAATTCTACC+AGG 0.535523 1_3:-73701958 None:intergenic
GATATAATTGAGGGCAAAGA+GGG 0.535939 1_3:+73699865 Msa0139800:CDS
TCTATATTACATATAAAAGC+AGG 0.536951 1_3:-73702157 None:intergenic
TGGATCAAGTAAAGACTCTA+GGG 0.538268 1_3:+73701144 Msa0139800:CDS
AATACTTCAAGAAGTTATGC+GGG 0.538847 1_3:+73700110 Msa0139800:CDS
ACTTACTTCAACAAAGGAAG+AGG 0.540450 1_3:-73703582 None:intergenic
AAGCATATCTTGAGTTGGTA+CGG 0.543078 1_3:-73700379 None:intergenic
CCATTCCAATCGATTCAAGA+AGG 0.543286 1_3:+73702760 Msa0139800:CDS
TTCGGGGAATTTCCGACACA+AGG 0.543374 1_3:+73703486 Msa0139800:CDS
GATCCAAGACGTATTCCTAC+AGG 0.544747 1_3:-73701897 None:intergenic
TTACCTGTAGGAATACGTCT+TGG 0.547868 1_3:+73701894 Msa0139800:CDS
CCTTTGAAAATCGGACGTGA+GGG 0.548394 1_3:-73699165 None:intergenic
CATATTTATTCTGACTCAGA+AGG 0.548655 1_3:+73702343 Msa0139800:CDS
TGACACATTACTAATTCCCC+TGG 0.549045 1_3:-73699742 None:intergenic
GAACAAATATAGAACCAGAA+TGG 0.550621 1_3:+73699560 Msa0139800:CDS
CCCTTTGAAAATCGGACGTG+AGG 0.550708 1_3:-73699166 None:intergenic
GTTTGTACTTACTTCAACAA+AGG 0.560389 1_3:-73703588 None:intergenic
AGTTGCTAAGAGTAAAATAC+GGG 0.563519 1_3:+73700065 Msa0139800:CDS
TTACATCCATTAGTGTGTAA+GGG 0.565613 1_3:+73700225 Msa0139800:CDS
CACCCTACACGTACACGTCA+TGG 0.566616 1_3:+73702130 Msa0139800:CDS
AAATATAGAACCAGAATGGA+TGG 0.566690 1_3:+73699564 Msa0139800:CDS
TCTATAGAAGAGTTATCTAT+CGG 0.571448 1_3:+73699677 Msa0139800:CDS
GCTGTACGAACATCAGATGC+TGG 0.573261 1_3:+73701605 Msa0139800:CDS
TACACGTCGACTTGTTGAAG+TGG 0.573503 1_3:+73701634 Msa0139800:CDS
CCGATTATTCAAATAGATGG+AGG 0.576436 1_3:+73699625 Msa0139800:CDS
GAAGATTTCATTGAGTATCG+AGG 0.578377 1_3:+73702949 Msa0139800:CDS
ATGCCCAATCTATGCAAAGT+AGG 0.578492 1_3:-73700159 None:intergenic
CACCAATTAGTCGGAATGAG+AGG 0.580106 1_3:+73701458 Msa0139800:CDS
GAGTCCTATTCATGGGGACC+TGG 0.582108 1_3:+73701940 Msa0139800:CDS
AACTAATTGAATCCTTGTGT+CGG 0.584495 1_3:-73703498 None:intergenic
TCACTTTCATTACATCGATG+TGG 0.585158 1_3:+73699958 Msa0139800:CDS
TCTTATCAGGAAAGTCGTGC+AGG 0.586356 1_3:+73702455 Msa0139800:CDS
ATTAATAGACCATTTCGGAA+TGG 0.587547 1_3:+73701103 Msa0139800:CDS
CCTACTTTCTTACGATTACG+AGG 0.587628 1_3:+73699250 Msa0139800:CDS
GAAATGGGATCCCCAATAGC+CGG 0.587924 1_3:-73700357 None:intergenic
TGTGTCGGAAATTCCCCGAA+TGG 0.589742 1_3:-73703483 None:intergenic
ACGATATATATATCGGTTCA+CGG 0.590851 1_3:+73701780 Msa0139800:CDS
GGCCTTTATGTATTAACTAG+CGG 0.596927 1_3:+73700405 Msa0139800:CDS
AAAATTGGTACAAGAAGCCG+TGG 0.599616 1_3:+73699768 Msa0139800:CDS
TATCCATGACGTGTACGTGT+AGG 0.600683 1_3:-73702133 None:intergenic
AGCTCTATTGCTATTTCGCG+GGG 0.600779 1_3:-73699985 None:intergenic
ATTCAAAGCAATTTACGAGA+AGG 0.601229 1_3:+73701521 Msa0139800:CDS
CTCCTTGATAATGGAATCCG+CGG 0.604913 1_3:+73699796 Msa0139800:CDS
AGATATAATTGAGGGCAAAG+AGG 0.606620 1_3:+73699864 Msa0139800:CDS
CATCGATGTAATGAAAGTGA+TGG 0.607503 1_3:-73699955 None:intergenic
CTTACTTCAACAAAGGAAGA+GGG 0.610881 1_3:-73703581 None:intergenic
TACTTCAACAAAGGAAGAGG+GGG 0.611335 1_3:-73703579 None:intergenic
TCTCAAGTGCACCAATTAGT+CGG 0.615181 1_3:+73701449 Msa0139800:CDS
CCCCAATAGCCGGAGACAAG+AGG 0.615798 1_3:-73700347 None:intergenic
ATTATCAAGGAGTGTATCCA+CGG 0.619206 1_3:-73699785 None:intergenic
AATCCGCGGACAACCAATGA+GGG 0.620928 1_3:+73699810 Msa0139800:CDS
AAATACTTTAGCCGGATGAG+AGG 0.622971 1_3:+73699139 None:intergenic
CGTCCCTCATTGGTTGTCCG+CGG 0.625858 1_3:-73699813 None:intergenic
GTGATTGCTGAGATCCGCGC+GGG 0.626051 1_3:+73702283 Msa0139800:CDS
ACGTATTCCTACAGGTAAAG+GGG 0.629974 1_3:-73701889 None:intergenic
TTGCTACGGAGCCCGTAAAG+GGG 0.638134 1_3:+73701571 Msa0139800:CDS
AAATACTTCAAGAAGTTATG+CGG 0.639489 1_3:+73700109 Msa0139800:CDS
CGATTATTCAAATAGATGGA+GGG 0.639639 1_3:+73699626 Msa0139800:CDS
GTAGAATTGGGAGAAGCTGT+AGG 0.641313 1_3:+73701962 Msa0139800:CDS
ATACTGGTGGAGTATTCACA+GGG 0.646983 1_3:+73702044 Msa0139800:CDS
CGCGGACAACCAATGAGGGA+CGG 0.650205 1_3:+73699814 Msa0139800:CDS
GTTGTACGTCGAACAGATTG+CGG 0.659130 1_3:+73701668 Msa0139800:CDS
ACAACAAGTAGATCTACACC+AGG 0.661649 1_3:+73699724 Msa0139800:CDS
ATTCAATGCAGACTTTGATG+GGG 0.662689 1_3:+73700248 Msa0139800:CDS
GAAAACGAGTTGATTATTCG+GGG 0.664266 1_3:+73699911 Msa0139800:CDS
TGGGCGGAGTCCTATTCATG+GGG 0.665077 1_3:+73701934 Msa0139800:CDS
GAATCCGCGGACAACCAATG+AGG 0.667535 1_3:+73699809 Msa0139800:CDS
TACTTCAAGAAGTTATGCGG+GGG 0.669171 1_3:+73700112 Msa0139800:CDS
ATTTCAATGGAAACACCAGA+AGG 0.673294 1_3:-73702802 None:intergenic
CGTATTCCTACAGGTAAAGG+GGG 0.679391 1_3:-73701888 None:intergenic
TTACTTCAACAAAGGAAGAG+GGG 0.682642 1_3:-73703580 None:intergenic
TTATATGGACTGGATTAAAG+GGG 0.684921 1_3:-73701397 None:intergenic
ATACTTCAAGAAGTTATGCG+GGG 0.687954 1_3:+73700111 Msa0139800:CDS
TCAGTATGGGAATGTACATG+CGG 0.691247 1_3:+73701286 Msa0139800:CDS
GGAAATGGAAAATCCATTCG+GGG 0.695544 1_3:+73703470 Msa0139800:CDS
TTCGGATGCATGGTACACAT+CGG 0.696241 1_3:-73702383 None:intergenic
CAACAAGTAGATCTACACCA+GGG 0.701288 1_3:+73699725 Msa0139800:CDS
AACAAGTAGATCTACACCAG+GGG 0.706918 1_3:+73699726 Msa0139800:CDS
GGATTAATGTCAGATCCACA+AGG 0.711466 1_3:+73701479 Msa0139800:CDS
ATAATCGGTCTCAATTCGGG+AGG 0.712530 1_3:-73699610 None:intergenic
TTAACTAGCGGAAATCGTCG+AGG 0.734048 1_3:+73700417 Msa0139800:CDS
TCTGCCGATTGTGTTATGGG+CGG 0.746299 1_3:+73701918 Msa0139800:CDS
TAAAAGTATATGTTCCCGCG+CGG 0.748407 1_3:-73702297 None:intergenic
ACTGGTGGAGTATTCACAGG+GGG 0.750203 1_3:+73702046 Msa0139800:CDS
AGTGATTGCTGAGATCCGCG+CGG 0.769084 1_3:+73702282 Msa0139800:CDS
TACTGGTGGAGTATTCACAG+GGG 0.793942 1_3:+73702045 Msa0139800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAATCAAATAATATGTA+CGG + chr1_3:73702654-73702673 Msa0139800:CDS 10.0%
!!! TTTTTTTTTTCTTTTCTAAT+CGG - chr1_3:73703146-73703165 None:intergenic 10.0%
!! AATCAAAAAAAATTCATAAT+TGG + chr1_3:73703279-73703298 Msa0139800:intron 10.0%
!!! ATTTTGATACAAACATTAAT+TGG + chr1_3:73701743-73701762 Msa0139800:CDS 15.0%
!!! ATACTTTTAATTTGAAAGAA+AGG + chr1_3:73702311-73702330 Msa0139800:CDS 15.0%
!!! TACTTTTAATTTGAAAGAAA+GGG + chr1_3:73702312-73702331 Msa0139800:CDS 15.0%
!! TACATTACTATACAAAAATT+CGG - chr1_3:73702404-73702423 None:intergenic 15.0%
!! ATTACTAAATATAGAACTAT+AGG + chr1_3:73702904-73702923 Msa0139800:CDS 15.0%
!!! ATCGAATTAAAAATATTTTC+TGG + chr1_3:73703167-73703186 Msa0139800:intron 15.0%
!!! TGTAATTTTATATGAAATAC+CGG + chr1_3:73703358-73703377 Msa0139800:intron 15.0%
!! AATTATATTCTTTATGGAAA+TGG + chr1_3:73703455-73703474 Msa0139800:CDS 15.0%
!! TCTGGATTTAAGAATTATTA+TGG + chr1_3:73699402-73699421 Msa0139800:CDS 20.0%
!! TTAGAATTTCTGCAATTAAA+CGG - chr1_3:73700465-73700484 None:intergenic 20.0%
!! GTACCTATTATGAAATTTAT+GGG + chr1_3:73700682-73700701 Msa0139800:intron 20.0%
!! GTAAATTTATGTTATGATAC+TGG + chr1_3:73700876-73700895 Msa0139800:intron 20.0%
!!! AAGAAATGAATCCTAATTTT+AGG + chr1_3:73701366-73701385 Msa0139800:CDS 20.0%
!! GAATATATAATTTCTTGCTA+CGG + chr1_3:73701557-73701576 Msa0139800:CDS 20.0%
!!! AATTTTATTTTTCCATTCGA+GGG - chr1_3:73702094-73702113 None:intergenic 20.0%
!!! AAATTTTATTTTTCCATTCG+AGG - chr1_3:73702095-73702114 None:intergenic 20.0%
!! TCTATATTACATATAAAAGC+AGG - chr1_3:73702160-73702179 None:intergenic 20.0%
!!! TGAACTAATAGAAAACTTTT+TGG - chr1_3:73702235-73702254 None:intergenic 20.0%
!!! TTATTAAGTTTGAAGACTTT+TGG + chr1_3:73702598-73702617 Msa0139800:CDS 20.0%
!!! TCACGATACTTTTTATTTAT+TGG + chr1_3:73702708-73702727 Msa0139800:CDS 20.0%
!!! GAAATCTTCTTTTTGAAAAA+CGG - chr1_3:73702938-73702957 None:intergenic 20.0%
!!! CAAAACAAAATACTTTTTCT+TGG - chr1_3:73703330-73703349 None:intergenic 20.0%
!!! CAAGAAAAAGTATTTTGTTT+TGG + chr1_3:73703328-73703347 Msa0139800:intron 20.0%
!!! AAAAGTATTTTGTTTTGGTT+CGG + chr1_3:73703333-73703352 Msa0139800:intron 20.0%
!! GGTATTTCATATAAAATTAC+AGG - chr1_3:73703359-73703378 None:intergenic 20.0%
!! GTTGTCAATTATATTCTTTA+TGG + chr1_3:73703449-73703468 Msa0139800:CDS 20.0%
!!! AAAGTAGGTTTTTTAACTAC+GGG - chr1_3:73699238-73699257 None:intergenic 25.0%
!!! GAAAGTAGGTTTTTTAACTA+CGG - chr1_3:73699239-73699258 None:intergenic 25.0%
! AATTATTATGGATTCTTCGT+TGG + chr1_3:73699414-73699433 Msa0139800:CDS 25.0%
!!! AGGAAGAAGAAAGAATTTTT+TGG + chr1_3:73699504-73699523 Msa0139800:CDS 25.0%
!!! ATTCTGGTTCTATATTTGTT+CGG - chr1_3:73699561-73699580 None:intergenic 25.0%
! TCTATAGAAGAGTTATCTAT+CGG + chr1_3:73699677-73699696 Msa0139800:CDS 25.0%
!!! TAGATCTACTTGTTGTTAAT+AGG - chr1_3:73699720-73699739 None:intergenic 25.0%
! AGTAATGTGTCAAGAAAAAT+TGG + chr1_3:73699753-73699772 Msa0139800:CDS 25.0%
!! ATCGTTTTCAGATATAATTG+AGG + chr1_3:73699855-73699874 Msa0139800:CDS 25.0%
!! TCGTTTTCAGATATAATTGA+GGG + chr1_3:73699856-73699875 Msa0139800:CDS 25.0%
! AAATACTTCAAGAAGTTATG+CGG + chr1_3:73700109-73700128 Msa0139800:CDS 25.0%
!!! TTTCAACCTATTTTAGTAGA+AGG + chr1_3:73700189-73700208 Msa0139800:CDS 25.0%
! TCATAGGAATTGCAAAAAAA+GGG - chr1_3:73700537-73700556 None:intergenic 25.0%
! ATCATAGGAATTGCAAAAAA+AGG - chr1_3:73700538-73700557 None:intergenic 25.0%
!! TAAATTTCGATAGTCCTTTT+TGG + chr1_3:73700586-73700605 Msa0139800:intron 25.0%
! GGTACCTATTATGAAATTTA+TGG + chr1_3:73700681-73700700 Msa0139800:intron 25.0%
! ATGCCCATAAATTTCATAAT+AGG - chr1_3:73700688-73700707 None:intergenic 25.0%
! TGATTAGATACCATATGAAT+AGG - chr1_3:73700826-73700845 None:intergenic 25.0%
! ATGGTATCTAATCATATAGA+TGG + chr1_3:73700832-73700851 Msa0139800:intron 25.0%
! ATAACATAAATTTACCTAGC+TGG - chr1_3:73700871-73700890 None:intergenic 25.0%
! CGTGAATAAACATAAAGAAA+AGG + chr1_3:73700937-73700956 Msa0139800:intron 25.0%
! AATGAATTTGAGTCAATGAT+TGG - chr1_3:73700970-73700989 None:intergenic 25.0%
!! CTTTTAACAATACCTTCTAA+AGG + chr1_3:73701212-73701231 Msa0139800:CDS 25.0%
!! TGAACAACAAAGTTCTATTT+TGG + chr1_3:73701253-73701272 Msa0139800:CDS 25.0%
! TTGGAAAAACATAATCAGTA+TGG + chr1_3:73701272-73701291 Msa0139800:CDS 25.0%
! TGGAAAAACATAATCAGTAT+GGG + chr1_3:73701273-73701292 Msa0139800:CDS 25.0%
!!! ATTATATGGACTGGATTAAA+GGG - chr1_3:73701401-73701420 None:intergenic 25.0%
! GTTTGTATCAAAATTCTTTC+TGG - chr1_3:73701737-73701756 None:intergenic 25.0%
! AGAAATCAAGATATTGGAAT+TGG + chr1_3:73701815-73701834 Msa0139800:CDS 25.0%
!! ACATTAAGAACTTTTCATAC+TGG + chr1_3:73702028-73702047 Msa0139800:CDS 25.0%
!!! ATTTTATTTTTCCATTCGAG+GGG - chr1_3:73702093-73702112 None:intergenic 25.0%
!! ACTAATAGAAAACTTTTTGG+TGG - chr1_3:73702232-73702251 None:intergenic 25.0%
! TACCAAAAACAAGTCATTTA+TGG + chr1_3:73702431-73702450 Msa0139800:CDS 25.0%
!!! ATCCATAAATGACTTGTTTT+TGG - chr1_3:73702436-73702455 None:intergenic 25.0%
!! ACTTTTGGTACAAAAGAAAA+GGG + chr1_3:73702613-73702632 Msa0139800:CDS 25.0%
!!! AAATCTATTTCTTCGTCTTT+TGG - chr1_3:73702734-73702753 None:intergenic 25.0%
! CTATGAAAAATACCATTGAT+AGG - chr1_3:73702829-73702848 None:intergenic 25.0%
!!! TCTACTTTGATTTGGTATTT+TGG - chr1_3:73702991-73703010 None:intergenic 25.0%
! AAAATCGATCTACTTTGATT+TGG - chr1_3:73702999-73703018 None:intergenic 25.0%
! CTTCTTATATTGAAAGTGAT+TGG - chr1_3:73703105-73703124 None:intergenic 25.0%
! AACGGTAAAAAAAAAATGGA+AGG + chr1_3:73703256-73703275 Msa0139800:intron 25.0%
!!! CAAAAAAAGTACTTCTATTG+AGG + chr1_3:73703553-73703572 Msa0139800:CDS 25.0%
! TTTGTTGAAGTAAGTACAAA+CGG + chr1_3:73703590-73703609 Msa0139800:intron 25.0%
AGCAAACGAAAAATTTGGAT+AGG - chr1_3:73699212-73699231 None:intergenic 30.0%
! ATCCAAATTTTTCGTTTGCT+AGG + chr1_3:73699212-73699231 Msa0139800:CDS 30.0%
TCGAATATGAAATCCAATCT+TGG + chr1_3:73699278-73699297 Msa0139800:CDS 30.0%
! CGAAATAGAGAAATTTCTAG+TGG + chr1_3:73699349-73699368 Msa0139800:CDS 30.0%
TTGGTAGAATGGAAAGAATT+AGG + chr1_3:73699433-73699452 Msa0139800:CDS 30.0%
CACTGACAATGAAAATGAAT+GGG + chr1_3:73699468-73699487 Msa0139800:CDS 30.0%
GAACAAATATAGAACCAGAA+TGG + chr1_3:73699560-73699579 Msa0139800:CDS 30.0%
AAATATAGAACCAGAATGGA+TGG + chr1_3:73699564-73699583 Msa0139800:CDS 30.0%
TTGAATAATCGGTCTCAATT+CGG - chr1_3:73699617-73699636 None:intergenic 30.0%
AGACCGATTATTCAAATAGA+TGG + chr1_3:73699622-73699641 Msa0139800:CDS 30.0%
CCTCCATCTATTTGAATAAT+CGG - chr1_3:73699628-73699647 None:intergenic 30.0%
CGATTATTCAAATAGATGGA+GGG + chr1_3:73699626-73699645 Msa0139800:CDS 30.0%
!! TGGAAAACGAGTTGATTATT+CGG + chr1_3:73699909-73699928 Msa0139800:CDS 30.0%
TTTCAGACATTTCTAATTCG+TGG + chr1_3:73700009-73700028 Msa0139800:CDS 30.0%
! AAACATTTTGCTTCGAACAT+AGG + chr1_3:73700042-73700061 Msa0139800:CDS 30.0%
GAGTTGCTAAGAGTAAAATA+CGG + chr1_3:73700064-73700083 Msa0139800:CDS 30.0%
AGTTGCTAAGAGTAAAATAC+GGG + chr1_3:73700065-73700084 Msa0139800:CDS 30.0%
! TGAAGTATTTCCCATACAAT+CGG - chr1_3:73700099-73700118 None:intergenic 30.0%
AATACTTCAAGAAGTTATGC+GGG + chr1_3:73700110-73700129 Msa0139800:CDS 30.0%
TTTACATCCATTAGTGTGTA+AGG + chr1_3:73700224-73700243 Msa0139800:CDS 30.0%
TTACATCCATTAGTGTGTAA+GGG + chr1_3:73700225-73700244 Msa0139800:CDS 30.0%
TTCCGCTAGTTAATACATAA+AGG - chr1_3:73700410-73700429 None:intergenic 30.0%
! GAAGTTCACTATGAATCTTT+TGG + chr1_3:73700660-73700679 Msa0139800:intron 30.0%
ATATACATTAGAACCACTGT+TGG + chr1_3:73700747-73700766 Msa0139800:intron 30.0%
AAAAGAAATATGACCAACAG+TGG - chr1_3:73700763-73700782 None:intergenic 30.0%
GAAATTGAAGAAGCTATACA+AGG + chr1_3:73700789-73700808 Msa0139800:intron 30.0%
GTTATTGTGAAAGACTAGAT+TGG - chr1_3:73701045-73701064 None:intergenic 30.0%
TCTGCTAATAAGTCGTTTAA+TGG - chr1_3:73701084-73701103 None:intergenic 30.0%
AGCAGATTAATAGACCATTT+CGG + chr1_3:73701098-73701117 Msa0139800:CDS 30.0%
ATTAATAGACCATTTCGGAA+TGG + chr1_3:73701103-73701122 Msa0139800:CDS 30.0%
ACTGCTACATCTATTTCATT+AGG + chr1_3:73701179-73701198 Msa0139800:CDS 30.0%
! TAACAATACCTTCTAAAGGA+TGG + chr1_3:73701216-73701235 Msa0139800:CDS 30.0%
CATACCATATTTCAATGGAT+TGG - chr1_3:73701325-73701344 None:intergenic 30.0%
TGTAGCATACCATATTTCAA+TGG - chr1_3:73701330-73701349 None:intergenic 30.0%
!! TTATATGGACTGGATTAAAG+GGG - chr1_3:73701400-73701419 None:intergenic 30.0%
!! CATTATATGGACTGGATTAA+AGG - chr1_3:73701402-73701421 None:intergenic 30.0%
GAAAAAGACATTATATGGAC+TGG - chr1_3:73701410-73701429 None:intergenic 30.0%
! GTCCATATAATGTCTTTTTC+AGG + chr1_3:73701410-73701429 Msa0139800:CDS 30.0%
CTCCTGAAAAAGACATTATA+TGG - chr1_3:73701415-73701434 None:intergenic 30.0%
AAATCAATCATTTGTCCTTG+TGG - chr1_3:73701497-73701516 None:intergenic 30.0%
! TCTCGTAAATTGCTTTGAAT+GGG - chr1_3:73701521-73701540 None:intergenic 30.0%
! TTCTCGTAAATTGCTTTGAA+TGG - chr1_3:73701522-73701541 None:intergenic 30.0%
ATTCAAAGCAATTTACGAGA+AGG + chr1_3:73701521-73701540 Msa0139800:CDS 30.0%
ATTTCTGTAAATACCCGAAA+TGG + chr1_3:73701704-73701723 Msa0139800:CDS 30.0%
! TTTCTGGTATCATTCCATTT+CGG - chr1_3:73701721-73701740 None:intergenic 30.0%
GTAGCAGACGATATATATAT+CGG + chr1_3:73701773-73701792 Msa0139800:CDS 30.0%
!! ACGATATATATATCGGTTCA+CGG + chr1_3:73701780-73701799 Msa0139800:CDS 30.0%
GTCGTTAGAAATCAAGATAT+TGG + chr1_3:73701809-73701828 Msa0139800:CDS 30.0%
ATTATTGCTGGTCAATCTAT+TGG + chr1_3:73701986-73702005 Msa0139800:CDS 30.0%
! TTAAGAACTTTTCATACTGG+TGG + chr1_3:73702031-73702050 Msa0139800:CDS 30.0%
!!! TTTTATTTTTCCATTCGAGG+GGG - chr1_3:73702092-73702111 None:intergenic 30.0%
CATATTTATTCTGACTCAGA+AGG + chr1_3:73702343-73702362 Msa0139800:CDS 30.0%
TATACAAAAATTCGGATGCA+TGG - chr1_3:73702396-73702415 None:intergenic 30.0%
AGTCATTTATGGATCTTATC+AGG + chr1_3:73702442-73702461 Msa0139800:CDS 30.0%
!!! AATCCATTTTTTACTTCGCA+AGG + chr1_3:73702486-73702505 Msa0139800:CDS 30.0%
!! AACATTGATTCTCTTTCTAC+TGG + chr1_3:73702523-73702542 Msa0139800:CDS 30.0%
! GACTTTTGGTACAAAAGAAA+AGG + chr1_3:73702612-73702631 Msa0139800:CDS 30.0%
! CTTTTGGTACAAAAGAAAAG+GGG + chr1_3:73702614-73702633 Msa0139800:CDS 30.0%
TACGGATCATTCTCATTTAA+TGG + chr1_3:73702672-73702691 Msa0139800:CDS 30.0%
!! AAAGTATCGTGAAAAATAGC+AGG - chr1_3:73702700-73702719 None:intergenic 30.0%
TCCATTGAAATACCTATCAA+TGG + chr1_3:73702814-73702833 Msa0139800:CDS 30.0%
ACCATTGATAGGTATTTCAA+TGG - chr1_3:73702818-73702837 None:intergenic 30.0%
TACCATTATGGAAGAAGATT+CGG - chr1_3:73703052-73703071 None:intergenic 30.0%
AATCTTCTTCCATAATGGTA+CGG + chr1_3:73703052-73703071 Msa0139800:intron 30.0%
ACTATTATTCCGTACCATTA+TGG - chr1_3:73703064-73703083 None:intergenic 30.0%
AATAATAGTCTCGTTGGAAT+AGG + chr1_3:73703075-73703094 Msa0139800:intron 30.0%
TTCAATATAAGAAGTCGAGT+AGG + chr1_3:73703111-73703130 Msa0139800:intron 30.0%
!!! CATTTTTTTTTTACCGTTCC+GGG - chr1_3:73703254-73703273 None:intergenic 30.0%
!!! CCATTTTTTTTTTACCGTTC+CGG - chr1_3:73703255-73703274 None:intergenic 30.0%
ATAATTGGATCTATGTCCAA+TGG + chr1_3:73703294-73703313 Msa0139800:intron 30.0%
TTTACAAAATCGATACTGTC+CGG - chr1_3:73703380-73703399 None:intergenic 30.0%
ATGGAAATGGAAAATCCATT+CGG + chr1_3:73703468-73703487 Msa0139800:CDS 30.0%
AACTAATTGAATCCTTGTGT+CGG - chr1_3:73703501-73703520 None:intergenic 30.0%
ACACAAGGATTCAATTAGTT+CGG + chr1_3:73703501-73703520 Msa0139800:CDS 30.0%
!! GACTTGTTTAGTCTTGAATT+GGG + chr1_3:73703523-73703542 Msa0139800:CDS 30.0%
!! AAAAAGTACTTCTATTGAGG+AGG + chr1_3:73703556-73703575 Msa0139800:CDS 30.0%
GTTTGTACTTACTTCAACAA+AGG - chr1_3:73703591-73703610 None:intergenic 30.0%
TTGGATAGGATCCAATAAGA+TGG - chr1_3:73699198-73699217 None:intergenic 35.0%
GGATACTGTATTTCCAAGAT+TGG - chr1_3:73699294-73699313 None:intergenic 35.0%
CTTGAGTAGCAAAAAAGAGT+GGG - chr1_3:73699315-73699334 None:intergenic 35.0%
ACGAGAACAATTAGTTGATC+TGG + chr1_3:73699384-73699403 Msa0139800:CDS 35.0%
ATGGAAAGAATTAGGAGAAG+AGG + chr1_3:73699441-73699460 Msa0139800:CDS 35.0%
TGGAAAGAATTAGGAGAAGA+GGG + chr1_3:73699442-73699461 Msa0139800:CDS 35.0%
! CCATTCATTTTCATTGTCAG+TGG - chr1_3:73699470-73699489 None:intergenic 35.0%
CCACTGACAATGAAAATGAA+TGG + chr1_3:73699467-73699486 Msa0139800:CDS 35.0%
AGACATAAAACCATCCATTC+TGG - chr1_3:73699577-73699596 None:intergenic 35.0%
TGAATAATCGGTCTCAATTC+GGG - chr1_3:73699616-73699635 None:intergenic 35.0%
CCGATTATTCAAATAGATGG+AGG + chr1_3:73699625-73699644 Msa0139800:CDS 35.0%
! ATTATCAAGGAGTGTATCCA+CGG - chr1_3:73699788-73699807 None:intergenic 35.0%
AGATATAATTGAGGGCAAAG+AGG + chr1_3:73699864-73699883 Msa0139800:CDS 35.0%
GATATAATTGAGGGCAAAGA+GGG + chr1_3:73699865-73699884 Msa0139800:CDS 35.0%
!! GGAAAACGAGTTGATTATTC+GGG + chr1_3:73699910-73699929 Msa0139800:CDS 35.0%
!! GAAAACGAGTTGATTATTCG+GGG + chr1_3:73699911-73699930 Msa0139800:CDS 35.0%
CATCGATGTAATGAAAGTGA+TGG - chr1_3:73699958-73699977 None:intergenic 35.0%
TCACTTTCATTACATCGATG+TGG + chr1_3:73699958-73699977 Msa0139800:CDS 35.0%
!! ATAGCTCTATTGCTATTTCG+CGG - chr1_3:73699990-73700009 None:intergenic 35.0%
GGAAAAAGAACCGATTGTAT+GGG + chr1_3:73700086-73700105 Msa0139800:CDS 35.0%
ATACTTCAAGAAGTTATGCG+GGG + chr1_3:73700111-73700130 Msa0139800:CDS 35.0%
TTGAATCCCTTACACACTAA+TGG - chr1_3:73700234-73700253 None:intergenic 35.0%
GATTCAATGCAGACTTTGAT+GGG + chr1_3:73700247-73700266 Msa0139800:CDS 35.0%
ATTCAATGCAGACTTTGATG+GGG + chr1_3:73700248-73700267 Msa0139800:CDS 35.0%
TGTTCATGTGCCTTTATCTT+TGG + chr1_3:73700281-73700300 Msa0139800:CDS 35.0%
!! AAGCATATCTTGAGTTGGTA+CGG - chr1_3:73700382-73700401 None:intergenic 35.0%
CCTATAAGCATATCTTGAGT+TGG - chr1_3:73700387-73700406 None:intergenic 35.0%
CCAACTCAAGATATGCTTAT+AGG + chr1_3:73700384-73700403 Msa0139800:CDS 35.0%
GGCCTTTATGTATTAACTAG+CGG + chr1_3:73700405-73700424 Msa0139800:CDS 35.0%
TGCAATTCCTATGATGCAAT+TGG + chr1_3:73700543-73700562 Msa0139800:intron 35.0%
ATAAGCTCCAATTGCATCAT+AGG - chr1_3:73700553-73700572 None:intergenic 35.0%
GATTCATAGTGAACTTCGAT+AGG - chr1_3:73700657-73700676 None:intergenic 35.0%
! TTTTCTCGAGCCTATTCATA+TGG + chr1_3:73700813-73700832 Msa0139800:intron 35.0%
TATGATACTGGCGTAAATTC+AGG + chr1_3:73700888-73700907 Msa0139800:intron 35.0%
GTCTTTCACAATAACGTGAT+AGG + chr1_3:73701050-73701069 Msa0139800:intron 35.0%
TTTCACAATAACGTGATAGG+TGG + chr1_3:73701053-73701072 Msa0139800:intron 35.0%
ATGTATATGCCATTCCGAAA+TGG - chr1_3:73701115-73701134 None:intergenic 35.0%
TGGATCAAGTAAAGACTCTA+GGG + chr1_3:73701144-73701163 Msa0139800:CDS 35.0%
!! AACTTTGTTGTTCAGCATCT+TGG - chr1_3:73701247-73701266 None:intergenic 35.0%
TACGCCAATCCATTGAAATA+TGG + chr1_3:73701318-73701337 Msa0139800:CDS 35.0%
TTCTGGTATCATTCCATTTC+GGG - chr1_3:73701720-73701739 None:intergenic 35.0%
AAGGGGGTTCGAATAAATAT+TGG - chr1_3:73701875-73701894 None:intergenic 35.0%
CTTAATGTTAGTTGAGTTCC+CGG - chr1_3:73702016-73702035 None:intergenic 35.0%
GATCCTTGCGAAGTAAAAAA+TGG - chr1_3:73702492-73702511 None:intergenic 35.0%
TCTTTCCTTCTTGAATCGAT+TGG - chr1_3:73702768-73702787 None:intergenic 35.0%
ATTTCAATGGAAACACCAGA+AGG - chr1_3:73702805-73702824 None:intergenic 35.0%
GAATTCTGTCTTCTGTATTG+AGG - chr1_3:73702880-73702899 None:intergenic 35.0%
CAATACAGAAGACAGAATTC+AGG + chr1_3:73702880-73702899 Msa0139800:CDS 35.0%
! GAAGATTTCATTGAGTATCG+AGG + chr1_3:73702949-73702968 Msa0139800:CDS 35.0%
GGTAAAATATGCACTTCTTC+GGG - chr1_3:73703030-73703049 None:intergenic 35.0%
GGGTAAAATATGCACTTCTT+CGG - chr1_3:73703031-73703050 None:intergenic 35.0%
ACCATTATGGAAGAAGATTC+GGG - chr1_3:73703051-73703070 None:intergenic 35.0%
AATATAAGAAGTCGAGTAGG+CGG + chr1_3:73703114-73703133 Msa0139800:intron 35.0%
! TCTGGAAATATCCATTTTCC+CGG + chr1_3:73703185-73703204 Msa0139800:intron 35.0%
TATCAAGATAGAACTGTGTC+GGG - chr1_3:73703228-73703247 None:intergenic 35.0%
GTATCAAGATAGAACTGTGT+CGG - chr1_3:73703229-73703248 None:intergenic 35.0%
CCGGAACGGTAAAAAAAAAA+TGG + chr1_3:73703252-73703271 Msa0139800:intron 35.0%
TCTTTCCTGGAATAGATCTT+GGG - chr1_3:73703411-73703430 None:intergenic 35.0%
ATTCCAGGAAAGAGATAATC+TGG + chr1_3:73703418-73703437 Msa0139800:intron 35.0%
TGGAAATGGAAAATCCATTC+GGG + chr1_3:73703469-73703488 Msa0139800:CDS 35.0%
!! GGACTTGTTTAGTCTTGAAT+TGG + chr1_3:73703522-73703541 Msa0139800:CDS 35.0%
!! TTAGTCTTGAATTGGGATCA+AGG + chr1_3:73703530-73703549 Msa0139800:CDS 35.0%
TTACTTCAACAAAGGAAGAG+GGG - chr1_3:73703583-73703602 None:intergenic 35.0%
CTTACTTCAACAAAGGAAGA+GGG - chr1_3:73703584-73703603 None:intergenic 35.0%
ACTTACTTCAACAAAGGAAG+AGG - chr1_3:73703585-73703604 None:intergenic 35.0%
AGAAAAAGAAATGACCCATC+TGG + chr1_3:73703668-73703687 Msa0139800:intron 35.0%
GGCCTAGCAAACGAAAAATT+TGG - chr1_3:73699217-73699236 None:intergenic 40.0%
CCTCGTAATCGTAAGAAAGT+AGG - chr1_3:73699253-73699272 None:intergenic 40.0%
CCTACTTTCTTACGATTACG+AGG + chr1_3:73699250-73699269 Msa0139800:CDS 40.0%
CCTTGAGTAGCAAAAAAGAG+TGG - chr1_3:73699316-73699335 None:intergenic 40.0%
!!! CCACTCTTTTTTGCTACTCA+AGG + chr1_3:73699313-73699332 Msa0139800:CDS 40.0%
!! AGAGAAATTTCTAGTGGAGC+AGG + chr1_3:73699355-73699374 Msa0139800:CDS 40.0%
! TGGATTCTTCGTTGGTAGAA+TGG + chr1_3:73699422-73699441 Msa0139800:CDS 40.0%
GAATGGGAAGATCGAAAAGT+AGG + chr1_3:73699484-73699503 Msa0139800:CDS 40.0%
!!! GAATTTTTTGGTTCGACGCA+TGG + chr1_3:73699516-73699535 Msa0139800:CDS 40.0%
TGGAGGGAAACTAATGAGTT+CGG + chr1_3:73699642-73699661 Msa0139800:CDS 40.0%
ACAACAAGTAGATCTACACC+AGG + chr1_3:73699724-73699743 Msa0139800:CDS 40.0%
CAACAAGTAGATCTACACCA+GGG + chr1_3:73699725-73699744 Msa0139800:CDS 40.0%
AACAAGTAGATCTACACCAG+GGG + chr1_3:73699726-73699745 Msa0139800:CDS 40.0%
TGACACATTACTAATTCCCC+TGG - chr1_3:73699745-73699764 None:intergenic 40.0%
AAAATTGGTACAAGAAGCCG+TGG + chr1_3:73699768-73699787 Msa0139800:CDS 40.0%
GTGGATACACTCCTTGATAA+TGG + chr1_3:73699787-73699806 Msa0139800:CDS 40.0%
TTATTATGACCGTCCCTCAT+TGG - chr1_3:73699826-73699845 None:intergenic 40.0%
!! TAGCTCTATTGCTATTTCGC+GGG - chr1_3:73699989-73700008 None:intergenic 40.0%
GGGAAAAAGAACCGATTGTA+TGG + chr1_3:73700085-73700104 Msa0139800:CDS 40.0%
TACTTCAAGAAGTTATGCGG+GGG + chr1_3:73700112-73700131 Msa0139800:CDS 40.0%
ATGCCCAATCTATGCAAAGT+AGG - chr1_3:73700162-73700181 None:intergenic 40.0%
TTTGCATAGATTGGGCATAC+AGG + chr1_3:73700164-73700183 Msa0139800:CDS 40.0%
GCACGTCCTTCTACTAAAAT+AGG - chr1_3:73700198-73700217 None:intergenic 40.0%
GGATTCAATGCAGACTTTGA+TGG + chr1_3:73700246-73700265 Msa0139800:CDS 40.0%
AGACTTTGATGGGGATCAAA+TGG + chr1_3:73700257-73700276 Msa0139800:CDS 40.0%
TCATGTGCCTTTATCTTTGG+AGG + chr1_3:73700284-73700303 Msa0139800:CDS 40.0%
TCATACAAACCTCTTGTCTC+CGG + chr1_3:73700338-73700357 Msa0139800:CDS 40.0%
!! TCTTGAGTTGGTACGGAAAT+GGG - chr1_3:73700375-73700394 None:intergenic 40.0%
!! ATCTTGAGTTGGTACGGAAA+TGG - chr1_3:73700376-73700395 None:intergenic 40.0%
!! GTTAGTGTTGATATCCAGCT+AGG + chr1_3:73700854-73700873 Msa0139800:intron 40.0%
ATATTCCACTCAGTGGGATT+CGG - chr1_3:73700999-73701018 None:intergenic 40.0%
!! GTGGAATATGGAGGTACTTA+TGG + chr1_3:73701010-73701029 Msa0139800:intron 40.0%
CTAGAGTCTTTACTTGATCC+AGG - chr1_3:73701145-73701164 None:intergenic 40.0%
CTGGATCAAGTAAAGACTCT+AGG + chr1_3:73701143-73701162 Msa0139800:CDS 40.0%
TAGATGTAGCAGTAGCTTGA+CGG - chr1_3:73701172-73701191 None:intergenic 40.0%
TCAGTATGGGAATGTACATG+CGG + chr1_3:73701286-73701305 Msa0139800:CDS 40.0%
GGGTCAGTCATCCTAAAATT+AGG - chr1_3:73701380-73701399 None:intergenic 40.0%
!!! ATGTCTTTTTCAGGAGCTAG+AGG + chr1_3:73701419-73701438 Msa0139800:CDS 40.0%
TCTCAAGTGCACCAATTAGT+CGG + chr1_3:73701449-73701468 Msa0139800:CDS 40.0%
ATCCTCTCATTCCGACTAAT+TGG - chr1_3:73701463-73701482 None:intergenic 40.0%
GGATTAATGTCAGATCCACA+AGG + chr1_3:73701479-73701498 Msa0139800:CDS 40.0%
ACGTATTCCTACAGGTAAAG+GGG - chr1_3:73701892-73701911 None:intergenic 40.0%
GACGTATTCCTACAGGTAAA+GGG - chr1_3:73701893-73701912 None:intergenic 40.0%
AGACGTATTCCTACAGGTAA+AGG - chr1_3:73701894-73701913 None:intergenic 40.0%
TTACCTGTAGGAATACGTCT+TGG + chr1_3:73701894-73701913 Msa0139800:CDS 40.0%
GAAGCTGTAGGTATTATTGC+TGG + chr1_3:73701974-73701993 Msa0139800:CDS 40.0%
! ATACTGGTGGAGTATTCACA+GGG + chr1_3:73702044-73702063 Msa0139800:CDS 40.0%
! TAAAAGTATATGTTCCCGCG+CGG - chr1_3:73702300-73702319 None:intergenic 40.0%
CCTTCTTGAATCGATTGGAA+TGG - chr1_3:73702763-73702782 None:intergenic 40.0%
! CCATTCCAATCGATTCAAGA+AGG + chr1_3:73702760-73702779 Msa0139800:CDS 40.0%
ACCCGAATCTTCTTCCATAA+TGG + chr1_3:73703047-73703066 Msa0139800:CDS 40.0%
GTACGGAATAATAGTCTCGT+TGG + chr1_3:73703069-73703088 Msa0139800:intron 40.0%
AGTTCTATCTTGATACCACC+CGG + chr1_3:73703233-73703252 Msa0139800:intron 40.0%
!!! TTTTTTTTTACCGTTCCGGG+TGG - chr1_3:73703251-73703270 None:intergenic 40.0%
! TCTTGGTAGTTGTGATCCAT+TGG - chr1_3:73703313-73703332 None:intergenic 40.0%
! TTTTCCCCAAGATCTATTCC+AGG + chr1_3:73703403-73703422 Msa0139800:intron 40.0%
CTTTCCTGGAATAGATCTTG+GGG - chr1_3:73703410-73703429 None:intergenic 40.0%
CTCTTTCCTGGAATAGATCT+TGG - chr1_3:73703412-73703431 None:intergenic 40.0%
GTTCCAGATTATCTCTTTCC+TGG - chr1_3:73703424-73703443 None:intergenic 40.0%
GGAAATGGAAAATCCATTCG+GGG + chr1_3:73703470-73703489 Msa0139800:CDS 40.0%
TACTTCAACAAAGGAAGAGG+GGG - chr1_3:73703582-73703601 None:intergenic 40.0%
! AGAAATGACCCATCTGGTTT+AGG + chr1_3:73703674-73703693 Msa0139800:intron 40.0%
! CCTTTGAAAATCGGACGTGA+GGG - chr1_3:73699168-73699187 None:intergenic 45.0%
! CCTCACGTCCGATTTTCAAA+GGG + chr1_3:73699166-73699185 Msa0139800:CDS 45.0%
! CTCACGTCCGATTTTCAAAG+GGG + chr1_3:73699167-73699186 Msa0139800:CDS 45.0%
! TCACGTCCGATTTTCAAAGG+GGG + chr1_3:73699168-73699187 Msa0139800:CDS 45.0%
! GGATCTCCCCCTTTGAAAAT+CGG - chr1_3:73699177-73699196 None:intergenic 45.0%
AAGGGGGAGATCCATCTTAT+TGG + chr1_3:73699184-73699203 Msa0139800:CDS 45.0%
ATAATCGGTCTCAATTCGGG+AGG - chr1_3:73699613-73699632 None:intergenic 45.0%
!! CTCCTTGATAATGGAATCCG+CGG + chr1_3:73699796-73699815 Msa0139800:CDS 45.0%
AGATTTCGAGAGACTCTGCT+TGG + chr1_3:73699889-73699908 Msa0139800:CDS 45.0%
!! AGCTCTATTGCTATTTCGCG+GGG - chr1_3:73699988-73700007 None:intergenic 45.0%
AGCGCCTACTTTGCATAGAT+TGG + chr1_3:73700155-73700174 Msa0139800:CDS 45.0%
GCGCCTACTTTGCATAGATT+GGG + chr1_3:73700156-73700175 Msa0139800:CDS 45.0%
GCTTGAGCCTCCAAAGATAA+AGG - chr1_3:73700294-73700313 None:intergenic 45.0%
TTAACTAGCGGAAATCGTCG+AGG + chr1_3:73700417-73700436 Msa0139800:CDS 45.0%
! GTCGAGGTATTTGTGCAAAC+AGG + chr1_3:73700433-73700452 Msa0139800:intron 45.0%
!!! TCGATAGTCCTTTTTGGCTC+CGG + chr1_3:73700592-73700611 Msa0139800:intron 45.0%
! TGCATTGATCTATTCGCCAC+CGG - chr1_3:73700614-73700633 None:intergenic 45.0%
GAATCCCACTGAGTGGAATA+TGG + chr1_3:73700998-73701017 Msa0139800:intron 45.0%
ACCTCCATATTCCACTCAGT+GGG - chr1_3:73701005-73701024 None:intergenic 45.0%
TACCTCCATATTCCACTCAG+TGG - chr1_3:73701006-73701025 None:intergenic 45.0%
!! TGGAGGTACTTATGGCAGAA+CGG + chr1_3:73701018-73701037 Msa0139800:intron 45.0%
GGCATATACATCACACATCC+TGG + chr1_3:73701124-73701143 Msa0139800:CDS 45.0%
!! TGGACTAGCCATCCTTTAGA+AGG - chr1_3:73701227-73701246 None:intergenic 45.0%
CACCAATTAGTCGGAATGAG+AGG + chr1_3:73701458-73701477 Msa0139800:CDS 45.0%
AGTATCCACAACCCCTTTAC+GGG - chr1_3:73701585-73701604 None:intergenic 45.0%
CAGTATCCACAACCCCTTTA+CGG - chr1_3:73701586-73701605 None:intergenic 45.0%
!! TACACGTCGACTTGTTGAAG+TGG + chr1_3:73701634-73701653 Msa0139800:CDS 45.0%
GTTGTACGTCGAACAGATTG+CGG + chr1_3:73701668-73701687 Msa0139800:CDS 45.0%
CGTATTCCTACAGGTAAAGG+GGG - chr1_3:73701891-73701910 None:intergenic 45.0%
GATCCAAGACGTATTCCTAC+AGG - chr1_3:73701900-73701919 None:intergenic 45.0%
! TGGATCTGCCGATTGTGTTA+TGG + chr1_3:73701914-73701933 Msa0139800:CDS 45.0%
! GGATCTGCCGATTGTGTTAT+GGG + chr1_3:73701915-73701934 Msa0139800:CDS 45.0%
GTAGAATTGGGAGAAGCTGT+AGG + chr1_3:73701962-73701981 Msa0139800:CDS 45.0%
TGGTCAATCTATTGGCGAAC+CGG + chr1_3:73701994-73702013 Msa0139800:CDS 45.0%
! CATACTGGTGGAGTATTCAC+AGG + chr1_3:73702043-73702062 Msa0139800:CDS 45.0%
! TACTGGTGGAGTATTCACAG+GGG + chr1_3:73702045-73702064 Msa0139800:CDS 45.0%
ATCCATGACGTGTACGTGTA+GGG - chr1_3:73702135-73702154 None:intergenic 45.0%
TATCCATGACGTGTACGTGT+AGG - chr1_3:73702136-73702155 None:intergenic 45.0%
ACTCAGAAGGCGAAATGCAT+TGG + chr1_3:73702356-73702375 Msa0139800:CDS 45.0%
TTCGGATGCATGGTACACAT+CGG - chr1_3:73702386-73702405 None:intergenic 45.0%
TCTTATCAGGAAAGTCGTGC+AGG + chr1_3:73702455-73702474 Msa0139800:CDS 45.0%
AACGAACTAATGCGACCTTC+TGG + chr1_3:73702787-73702806 Msa0139800:CDS 45.0%
! ATATCCATTTTCCCGGAGAG+AGG + chr1_3:73703192-73703211 Msa0139800:intron 45.0%
! TATCCATTTTCCCGGAGAGA+GGG + chr1_3:73703193-73703212 Msa0139800:intron 45.0%
GATATCTTATCCCTCTCTCC+GGG - chr1_3:73703206-73703225 None:intergenic 45.0%
GGATATCTTATCCCTCTCTC+CGG - chr1_3:73703207-73703226 None:intergenic 45.0%
TATCTTGATACCACCCGGAA+CGG + chr1_3:73703238-73703257 Msa0139800:intron 45.0%
! CCCTCACGTCCGATTTTCAA+AGG + chr1_3:73699165-73699184 Msa0139800:CDS 50.0%
! CCCTTTGAAAATCGGACGTG+AGG - chr1_3:73699169-73699188 None:intergenic 50.0%
CTCAATTCGGGAGGAAGAAC+TGG - chr1_3:73699604-73699623 None:intergenic 50.0%
GTCCGCGGATTCCATTATCA+AGG - chr1_3:73699801-73699820 None:intergenic 50.0%
AATCCGCGGACAACCAATGA+GGG + chr1_3:73699810-73699829 Msa0139800:CDS 50.0%
GGGCGTTCTGTTATTGTCGT+AGG + chr1_3:73699931-73699950 Msa0139800:CDS 50.0%
GGCGCTCTATTCAGCAATAC+TGG - chr1_3:73700141-73700160 None:intergenic 50.0%
AACCTCTTGTCTCCGGCTAT+TGG + chr1_3:73700345-73700364 Msa0139800:CDS 50.0%
ACCTCTTGTCTCCGGCTATT+GGG + chr1_3:73700346-73700365 Msa0139800:CDS 50.0%
GAAATGGGATCCCCAATAGC+CGG - chr1_3:73700360-73700379 None:intergenic 50.0%
!!! ATAGTCCTTTTTGGCTCCGG+TGG + chr1_3:73700595-73700614 Msa0139800:intron 50.0%
TCCCACTGAGTGGAATATGG+AGG + chr1_3:73701001-73701020 Msa0139800:intron 50.0%
!! GGAGGTACTTATGGCAGAAC+GGG + chr1_3:73701019-73701038 Msa0139800:intron 50.0%
GCTGTACGAACATCAGATGC+TGG + chr1_3:73701605-73701624 Msa0139800:CDS 50.0%
ACAGATTGCGGTACGATTCG+CGG + chr1_3:73701680-73701699 Msa0139800:CDS 50.0%
TTCGAACCCCCTTTACCTGT+AGG + chr1_3:73701882-73701901 Msa0139800:CDS 50.0%
! TCTGCCGATTGTGTTATGGG+CGG + chr1_3:73701918-73701937 Msa0139800:CDS 50.0%
GACTCCGCCCATAACACAAT+CGG - chr1_3:73701925-73701944 None:intergenic 50.0%
TATGGGCGGAGTCCTATTCA+TGG + chr1_3:73701932-73701951 Msa0139800:CDS 50.0%
ATGGGCGGAGTCCTATTCAT+GGG + chr1_3:73701933-73701952 Msa0139800:CDS 50.0%
TCTACCAGGTCCCCATGAAT+AGG - chr1_3:73701947-73701966 None:intergenic 50.0%
TCATGGGGACCTGGTAGAAT+TGG + chr1_3:73701949-73701968 Msa0139800:CDS 50.0%
CATGGGGACCTGGTAGAATT+GGG + chr1_3:73701950-73701969 Msa0139800:CDS 50.0%
CAGCTTCTCCCAATTCTACC+AGG - chr1_3:73701961-73701980 None:intergenic 50.0%
GGTCAATCTATTGGCGAACC+GGG + chr1_3:73701995-73702014 Msa0139800:CDS 50.0%
! ACTGGTGGAGTATTCACAGG+GGG + chr1_3:73702046-73702065 Msa0139800:CDS 50.0%
!! AGTATTCACAGGGGGTACTG+CGG + chr1_3:73702054-73702073 Msa0139800:CDS 50.0%
AAGAAGTCGAGTAGGCGGAT+TGG + chr1_3:73703119-73703138 Msa0139800:intron 50.0%
TATCCCTCTCTCCGGGAAAA+TGG - chr1_3:73703199-73703218 None:intergenic 50.0%
TGTGTCGGAAATTCCCCGAA+TGG - chr1_3:73703486-73703505 None:intergenic 50.0%
TTCGGGGAATTTCCGACACA+AGG + chr1_3:73703486-73703505 Msa0139800:CDS 50.0%
GAATCCGCGGACAACCAATG+AGG + chr1_3:73699809-73699828 Msa0139800:CDS 55.0%
CCTCTTGTCTCCGGCTATTG+GGG + chr1_3:73700347-73700366 Msa0139800:CDS 55.0%
ATTCGCCACCGGAGCCAAAA+AGG - chr1_3:73700603-73700622 None:intergenic 55.0%
TCGAACCGAATCCCACTGAG+TGG + chr1_3:73700991-73701010 Msa0139800:intron 55.0%
TCTTGCTACGGAGCCCGTAA+AGG + chr1_3:73701569-73701588 Msa0139800:CDS 55.0%
CTTGCTACGGAGCCCGTAAA+GGG + chr1_3:73701570-73701589 Msa0139800:CDS 55.0%
TTGCTACGGAGCCCGTAAAG+GGG + chr1_3:73701571-73701590 Msa0139800:CDS 55.0%
CAGATTGCGGTACGATTCGC+GGG + chr1_3:73701681-73701700 Msa0139800:CDS 55.0%
TGGGCGGAGTCCTATTCATG+GGG + chr1_3:73701934-73701953 Msa0139800:CDS 55.0%
GAGTCCTATTCATGGGGACC+TGG + chr1_3:73701940-73701959 Msa0139800:CDS 55.0%
CACCCTACACGTACACGTCA+TGG + chr1_3:73702130-73702149 Msa0139800:CDS 55.0%
AGTGATTGCTGAGATCCGCG+CGG + chr1_3:73702282-73702301 Msa0139800:CDS 55.0%
! CGTCCCTCATTGGTTGTCCG+CGG - chr1_3:73699816-73699835 None:intergenic 60.0%
CGCGGACAACCAATGAGGGA+CGG + chr1_3:73699814-73699833 Msa0139800:CDS 60.0%
CCCCAATAGCCGGAGACAAG+AGG - chr1_3:73700350-73700369 None:intergenic 60.0%
TATGTGCGAGCCCCCTCGAA+TGG + chr1_3:73702079-73702098 Msa0139800:CDS 60.0%
GTGATTGCTGAGATCCGCGC+GGG + chr1_3:73702283-73702302 Msa0139800:CDS 60.0%
CGGAGCCCGTAAAGGGGTTG+TGG + chr1_3:73701577-73701596 Msa0139800:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 73699154 73703701 73699154 ID=Msa0139800;Name=Msa0139800
chr1_3 mRNA 73699154 73703701 73699154 ID=Msa0139800-mRNA-1;Parent=Msa0139800;Name=Msa0139800-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0|1|1|1|4|0|1153
chr1_3 exon 73699154 73700438 73699154 ID=Msa0139800-mRNA-1:exon:25654;Parent=Msa0139800-mRNA-1
chr1_3 exon 73701072 73703068 73701072 ID=Msa0139800-mRNA-1:exon:25655;Parent=Msa0139800-mRNA-1
chr1_3 exon 73703425 73703598 73703425 ID=Msa0139800-mRNA-1:exon:25656;Parent=Msa0139800-mRNA-1
chr1_3 exon 73703696 73703701 73703696 ID=Msa0139800-mRNA-1:exon:25657;Parent=Msa0139800-mRNA-1
chr1_3 CDS 73699154 73700438 73699154 ID=Msa0139800-mRNA-1:cds;Parent=Msa0139800-mRNA-1
chr1_3 CDS 73701072 73703068 73701072 ID=Msa0139800-mRNA-1:cds;Parent=Msa0139800-mRNA-1
chr1_3 CDS 73703425 73703598 73703425 ID=Msa0139800-mRNA-1:cds;Parent=Msa0139800-mRNA-1
chr1_3 CDS 73703696 73703701 73703696 ID=Msa0139800-mRNA-1:cds;Parent=Msa0139800-mRNA-1
Gene Sequence

>Msa0139800

ATGAGAGGAAACCCTCACGTCCGATTTTCAAAGGGGGAGATCCATCTTATTGGATCCTATCCAAATTTTTCGTTTGCTAGGCCCGTAGTTAAAAAACCTACTTTCTTACGATTACGAGGTTCATTCGAATATGAAATCCAATCTTGGAAATACAGTATCCCACTCTTTTTTGCTACTCAAGGTTTCGATACATTTCGAAATAGAGAAATTTCTAGTGGAGCAGGTGCTATACGAGAACAATTAGTTGATCTGGATTTAAGAATTATTATGGATTCTTCGTTGGTAGAATGGAAAGAATTAGGAGAAGAGGGATCCACTGACAATGAAAATGAATGGGAAGATCGAAAAGTAGGAAGAAGAAAGAATTTTTTGGTTCGACGCATGGAATTAGCTAAGCACTTTATCCGAACAAATATAGAACCAGAATGGATGGTTTTATGTCTCTTACCAGTTCTTCCTCCCGAATTGAGACCGATTATTCAAATAGATGGAGGGAAACTAATGAGTTCGGATATTAATGAACTCTATAGAAGAGTTATCTATCGGAACAATACTCTTATTGACCTATTAACAACAAGTAGATCTACACCAGGGGAATTAGTAATGTGTCAAGAAAAATTGGTACAAGAAGCCGTGGATACACTCCTTGATAATGGAATCCGCGGACAACCAATGAGGGACGGTCATAATAAAGTTTACAAATCGTTTTCAGATATAATTGAGGGCAAAGAGGGAAGATTTCGAGAGACTCTGCTTGGAAAACGAGTTGATTATTCGGGGCGTTCTGTTATTGTCGTAGGTCCATCACTTTCATTACATCGATGTGGATTGCCCCGCGAAATAGCAATAGAGCTATTTCAGACATTTCTAATTCGTGGTTTAATTCGAAAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATACGGGAAAAAGAACCGATTGTATGGGAAATACTTCAAGAAGTTATGCGGGGGCATCCAGTATTGCTGAATAGAGCGCCTACTTTGCATAGATTGGGCATACAGGCATTTCAACCTATTTTAGTAGAAGGACGTGCTATTTGTTTACATCCATTAGTGTGTAAGGGATTCAATGCAGACTTTGATGGGGATCAAATGGCTGTTCATGTGCCTTTATCTTTGGAGGCTCAAGCAGAAGCTCGTTTACTTATGTTTTCTCATACAAACCTCTTGTCTCCGGCTATTGGGGATCCCATTTCCGTACCAACTCAAGATATGCTTATAGGCCTTTATGTATTAACTAGCGGAAATCGTCGAGGTGGAACTGCCATTAAACGACTTATTAGCAGATTAATAGACCATTTCGGAATGGCATATACATCACACATCCTGGATCAAGTAAAGACTCTAGGGTTCCGTCAAGCTACTGCTACATCTATTTCATTAGGAATTGATGATCTTTTAACAATACCTTCTAAAGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTCTATTTTGGAAAAACATAATCAGTATGGGAATGTACATGCGGTAGAAAAATTACGCCAATCCATTGAAATATGGTATGCTACAAGCGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACTGACCCCTTTAATCCAGTCCATATAATGTCTTTTTCAGGAGCTAGAGGAAATGCATCTCAAGTGCACCAATTAGTCGGAATGAGAGGATTAATGTCAGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGAGAAGGACTGTCTTTAACAGAATATATAATTTCTTGCTACGGAGCCCGTAAAGGGGTTGTGGATACTGCTGTACGAACATCAGATGCTGGATATCTTACACGTCGACTTGTTGAAGTGGTTCAACACATTGTTGTACGTCGAACAGATTGCGGTACGATTCGCGGGATTTCTGTAAATACCCGAAATGGAATGATACCAGAAAGAATTTTGATACAAACATTAATTGGTCGTGTAGTAGCAGACGATATATATATCGGTTCACGGTGCATTGTCGTTAGAAATCAAGATATTGGAATTGGACTTATCAATCGATTCATAACTTTTCAAACACAACCAATATTTATTCGAACCCCCTTTACCTGTAGGAATACGTCTTGGATCTGCCGATTGTGTTATGGGCGGAGTCCTATTCATGGGGACCTGGTAGAATTGGGAGAAGCTGTAGGTATTATTGCTGGTCAATCTATTGGCGAACCGGGAACTCAACTAACATTAAGAACTTTTCATACTGGTGGAGTATTCACAGGGGGTACTGCGGAATATGTGCGAGCCCCCTCGAATGGAAAAATAAAATTTAATGAAGATTTAGTTCACCCTACACGTACACGTCATGGATATCCTGCTTTTATATGTAATATAGACTTGTATGTAACTATTGAAAGTGACGATATTATACATAACGTGATTATTCCACCAAAAAGTTTTCTATTAGTTCAAAATGATCAATATGTAAAATCAGAACAAGTGATTGCTGAGATCCGCGCGGGAACATATACTTTTAATTTGAAAGAAAGGGTTCGAAAACATATTTATTCTGACTCAGAAGGCGAAATGCATTGGAGTACCGATGTGTACCATGCATCCGAATTTTTGTATAGTAATGTACATATCTTACCAAAAACAAGTCATTTATGGATCTTATCAGGAAAGTCGTGCAGGTCTGATACAATCCATTTTTTACTTCGCAAGGATCAAGATCAAATTAACATTGATTCTCTTTCTACTGGAAAAAGAAATATTTCTAATCTTTTAGTAAGTAATGATGAAGTAAAACGAAAATTATTAAGTTTGAAGACTTTTGGTACAAAAGAAAAGGGGATTAGCAATTATTCAATATTTAATCAAATAATATGTACGGATCATTCTCATTTAATGGATCCTGCTATTTTTCACGATACTTTTTATTTATTGGCCAAAAGACGAAGAAATAGATTTCTTATTCCATTCCAATCGATTCAAGAAGGAAAGAACGAACTAATGCGACCTTCTGGTGTTTCCATTGAAATACCTATCAATGGTATTTTTCATAGAAATAGTATTTTTGCTTATTTCGATGATCCTCAATACAGAAGACAGAATTCAGGAATTACTAAATATAGAACTATAGGAATTCATTCCGTTTTTCAAAAAGAAGATTTCATTGAGTATCGAGGAATCAAAGAATTAAAGCCAAAATACCAAATCAAAGTAGATCGATTTTTTTTTATTCCCGAAGAAGTGCATATTTTACCCGAATCTTCTTCCATAATGGAAAGAGATAATCTGGAACTCAAAGTTGTCAATTATATTCTTTATGGAAATGGAAAATCCATTCGGGGAATTTCCGACACAAGGATTCAATTAGTTCGGACTTGTTTAGTCTTGAATTGGGATCAAGGCAAAAAAAGTACTTCTATTGAGGAGGCCCCCTCTTCCTTTGTTGAAGATTGA
Protein sequence

>Msa0139800

MRGNPHVRFSKGEIHLIGSYPNFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFATQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSTDNENEWEDRKVGRRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRKHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGIDDLLTIPSKGWLVQDAEQQSSILEKHNQYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTRNGMIPERILIQTLIGRVVADDIYIGSRCIVVRNQDIGIGLINRFITFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRAPSNGKIKFNEDLVHPTRTRHGYPAFICNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVIAEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFLYSNVHILPKTSHLWILSGKSCRSDTIHFLLRKDQDQINIDSLSTGKRNISNLLVSNDEVKRKLLSLKTFGTKEKGISNYSIFNQIICTDHSHLMDPAIFHDTFYLLAKRRRNRFLIPFQSIQEGKNELMRPSGVSIEIPINGIFHRNSIFAYFDDPQYRRQNSGITKYRTIGIHSVFQKEDFIEYRGIKELKPKYQIKVDRFFFIPEEVHILPESSSIMERDNLELKVVNYILYGNGKSIRGISDTRIQLVRTCLVLNWDQGKKSTSIEEAPSSFVED*