Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012220 | XP_013466590.1 | 99.666 | 599 | 2 | 0 | 1 | 599 | 1 | 599 | 0.0 | 1204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012220 | sp|Q9C9X0|MP701_ARATH | 75.490 | 612 | 123 | 9 | 1 | 592 | 1 | 605 | 0.0 | 892 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012220 | A0A072VGA0 | 99.666 | 599 | 2 | 0 | 1 | 599 | 1 | 599 | 0.0 | 1204 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012220 | Msa0031820 | 0.800990 | 1.111826e-48 | -8.615850e-47 |
| Msa0012220 | Msa0070250 | 0.808675 | 2.756592e-50 | -8.615850e-47 |
| Msa0012220 | Msa0142110 | 0.820641 | 6.161130e-53 | -8.615850e-47 |
| Msa0012220 | Msa0144360 | 0.803262 | 3.791700e-49 | -8.615850e-47 |
| Msa0012220 | Msa0144380 | 0.807395 | 5.161779e-50 | -8.615850e-47 |
| Msa0012220 | Msa0171850 | 0.838821 | 2.290401e-57 | -8.615850e-47 |
| Msa0012220 | Msa0215360 | 0.838338 | 3.052288e-57 | -8.615850e-47 |
| Msa0012220 | Msa0221600 | 0.816081 | 6.645731e-52 | -8.615850e-47 |
| Msa0012220 | Msa0244380 | 0.800787 | 1.223429e-48 | -8.615850e-47 |
| Msa0012220 | Msa0252410 | 0.829044 | 6.414733e-55 | -8.615850e-47 |
| Msa0012220 | Msa0263220 | 0.821761 | 3.399441e-53 | -8.615850e-47 |
| Msa0012220 | Msa0333160 | 0.813490 | 2.493280e-51 | -8.615850e-47 |
| Msa0012220 | Msa0363810 | 0.803796 | 2.938380e-49 | -8.615850e-47 |
| Msa0012220 | Msa0411410 | 0.805657 | 1.200745e-49 | -8.615850e-47 |
| Msa0012220 | Msa0474700 | 0.800882 | 1.169942e-48 | -8.615850e-47 |
| Msa0012220 | Msa0478580 | 0.800523 | 1.385073e-48 | -8.615850e-47 |
| Msa0012220 | Msa0479200 | 0.804719 | 1.887474e-49 | -8.615850e-47 |
| Msa0012220 | Msa0656810 | 0.813863 | 2.063382e-51 | -8.615850e-47 |
| Msa0012220 | Msa0679100 | 0.821995 | 3.000565e-53 | -8.615850e-47 |
| Msa0012220 | Msa0744100 | 0.804396 | 2.204266e-49 | -8.615850e-47 |
| Msa0012220 | Msa0799000 | 0.801882 | 7.300474e-49 | -8.615850e-47 |
| Msa0012220 | Msa0818630 | 0.800456 | 1.428870e-48 | -8.615850e-47 |
| Msa0012220 | Msa0825270 | 0.806199 | 9.235363e-50 | -8.615850e-47 |
| Msa0012220 | Msa0837410 | 0.817045 | 4.042837e-52 | -8.615850e-47 |
| Msa0012220 | Msa0870650 | 0.802462 | 5.547593e-49 | -8.615850e-47 |
| Msa0012220 | Msa0981430 | 0.800452 | 1.431845e-48 | -8.615850e-47 |
| Msa0012220 | Msa1028350 | 0.829113 | 6.173643e-55 | -8.615850e-47 |
| Msa0012220 | Msa1083880 | 0.815885 | 7.350559e-52 | -8.615850e-47 |
| Msa0012220 | Msa1174530 | 0.805707 | 1.172212e-49 | -8.615850e-47 |
| Msa0012220 | Msa1181170 | -0.802728 | 4.889002e-49 | -8.615850e-47 |
| Msa0012220 | Msa1223330 | 0.806551 | 7.784828e-50 | -8.615850e-47 |
| Msa0012220 | Msa1235250 | 0.813427 | 2.573271e-51 | -8.615850e-47 |
| Msa0012220 | Msa1242640 | 0.809297 | 2.028536e-50 | -8.615850e-47 |
| Msa0012220 | Msa1329450 | 0.812321 | 4.497547e-51 | -8.615850e-47 |
| Msa0012220 | Msa1373820 | 0.811287 | 7.549786e-51 | -8.615850e-47 |
| Msa0012220 | Msa1443930 | 0.814438 | 1.540982e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012220 | MtrunA17_Chr1g0161371 | 99.666 | 599 | 2 | 0 | 1 | 599 | 1 | 599 | 0.0 | 1204 |
| Msa0012220 | MtrunA17_Chr8g0344311 | 87.769 | 605 | 65 | 4 | 1 | 599 | 1 | 602 | 0.0 | 996 |
| Msa0012220 | MtrunA17_Chr8g0391771 | 82.947 | 604 | 98 | 2 | 1 | 599 | 1 | 604 | 0.0 | 983 |
| Msa0012220 | MtrunA17_Chr2g0290411 | 48.073 | 545 | 257 | 8 | 52 | 582 | 13 | 545 | 5.43e-147 | 436 |
| Msa0012220 | MtrunA17_Chr4g0076251 | 48.785 | 535 | 249 | 6 | 51 | 568 | 25 | 551 | 2.77e-146 | 434 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012220 | AT1G68060.1 | 75.490 | 612 | 123 | 9 | 1 | 592 | 1 | 605 | 0.0 | 892 |
| Msa0012220 | AT1G24764.1 | 74.038 | 624 | 134 | 8 | 1 | 599 | 1 | 621 | 0.0 | 887 |
| Msa0012220 | AT1G24764.3 | 74.038 | 624 | 134 | 8 | 1 | 599 | 60 | 680 | 0.0 | 884 |
| Msa0012220 | AT1G14840.1 | 73.077 | 598 | 144 | 9 | 9 | 599 | 5 | 592 | 0.0 | 820 |
| Msa0012220 | AT2G01750.1 | 74.660 | 588 | 133 | 9 | 21 | 599 | 37 | 617 | 0.0 | 818 |
| Msa0012220 | AT2G01750.2 | 74.617 | 587 | 133 | 9 | 21 | 598 | 37 | 616 | 0.0 | 817 |
| Msa0012220 | AT1G14840.2 | 70.736 | 598 | 143 | 10 | 9 | 599 | 5 | 577 | 0.0 | 779 |
| Msa0012220 | AT1G24764.2 | 78.981 | 471 | 93 | 4 | 132 | 599 | 1 | 468 | 0.0 | 742 |
| Msa0012220 | AT4G17220.1 | 47.104 | 518 | 234 | 9 | 52 | 566 | 6 | 486 | 1.89e-135 | 405 |
Find 152 sgRNAs with CRISPR-Local
Find 389 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTTCTGAGCACTGTTTAC+AGG | 0.234770 | 1_1:+18367665 | None:intergenic |
| CGAAGCAATTCTTGCTCCTT+TGG | 0.241876 | 1_1:-18369575 | Msa0012220:CDS |
| AGAGGGAGGCGGATGATAAT+TGG | 0.272940 | 1_1:-18368105 | Msa0012220:CDS |
| CTTTGGTTTCTTCGAGAGAT+TGG | 0.277319 | 1_1:+18368128 | None:intergenic |
| TTCAAGTAGTGCAGCTTCTT+TGG | 0.279011 | 1_1:+18369352 | None:intergenic |
| TTCTAGCTCCCTCACAGTTT+GGG | 0.281893 | 1_1:+18369066 | None:intergenic |
| GCTCAGAACCAGCTAATTTC+TGG | 0.284801 | 1_1:-18367653 | Msa0012220:CDS |
| TGCCTCAACTTCCATGGCTT+TGG | 0.286023 | 1_1:+18367793 | None:intergenic |
| CTTCTAGCTCCCTCACAGTT+TGG | 0.287805 | 1_1:+18369065 | None:intergenic |
| ATCTCAAAATTAACCTCTAA+TGG | 0.292039 | 1_1:-18368316 | Msa0012220:CDS |
| ATCATCCGCCTCCCTCTCTT+TGG | 0.309437 | 1_1:+18368111 | None:intergenic |
| TACCCTGTTTGCTGTTACCT+TGG | 0.315274 | 1_1:+18368843 | None:intergenic |
| ATAAGCTGAATTTGAGTAAT+GGG | 0.339933 | 1_1:+18373707 | None:intergenic |
| TCTCTAAACGATCCAGAAAA+TGG | 0.341450 | 1_1:+18373243 | None:intergenic |
| CTGAGTGATTGTGACTTGTT+TGG | 0.344504 | 1_1:+18373631 | None:intergenic |
| CTTAGGCAAGAATCCATTAG+AGG | 0.344932 | 1_1:+18368303 | None:intergenic |
| GATAATTGGAAAGGAAATTC+AGG | 0.351491 | 1_1:-18368091 | Msa0012220:CDS |
| TAGTGCAGCTTCTTTGGATT+TGG | 0.353315 | 1_1:+18369358 | None:intergenic |
| AAAGCGGTTCAGCAATATAA+AGG | 0.353628 | 1_1:-18367690 | Msa0012220:CDS |
| TCAATATTGAGCTAGATGAT+AGG | 0.359640 | 1_1:+18368251 | None:intergenic |
| ATCATCCACCATGGAGGCCT+TGG | 0.362971 | 1_1:+18369301 | None:intergenic |
| CTAGAAGAGTCAGTCCTTGC+AGG | 0.368346 | 1_1:-18369049 | Msa0012220:CDS |
| TTCTGCTAGACAGCAGAGTA+TGG | 0.375230 | 1_1:-18373193 | Msa0012220:CDS |
| CAGTGAAAGTGGAGCTTAAT+CGG | 0.377411 | 1_1:-18373131 | Msa0012220:CDS |
| TCAGGAAGAAAACAAAATCT+TGG | 0.381761 | 1_1:-18369131 | Msa0012220:intron |
| TGAAGAACGACGATTCTTGC+AGG | 0.385019 | 1_1:-18368755 | Msa0012220:intron |
| CATGAATTTGTTGCACGGTT+CGG | 0.387547 | 1_1:-18373157 | Msa0012220:CDS |
| TCTGCCGGTGGGAAGTCATT+TGG | 0.398268 | 1_1:+18368061 | None:intergenic |
| CTTCTTTGCCTCAACTTCCA+TGG | 0.400320 | 1_1:+18367787 | None:intergenic |
| TGATAGGGATGACCTGAGTT+GGG | 0.405764 | 1_1:+18368267 | None:intergenic |
| AGATAAGGATAGAGAATTAT+CGG | 0.413036 | 1_1:-18372994 | Msa0012220:CDS |
| TGAGTGATTGTGACTTGTTT+GGG | 0.421702 | 1_1:+18373632 | None:intergenic |
| GTGCCAAGGTAACAGCAAAC+AGG | 0.425792 | 1_1:-18368846 | Msa0012220:CDS |
| TGCCTTGGCCAAGGCCTCCA+TGG | 0.436711 | 1_1:-18369309 | Msa0012220:CDS |
| ACGGCGATGGAGGAGATTTA+CGG | 0.436994 | 1_1:-18373294 | Msa0012220:exon |
| TCTTCAAGCCATTGTTTGAC+AGG | 0.443112 | 1_1:+18368772 | None:intergenic |
| AGCAATTCTTGCTCCTTTGG+AGG | 0.447816 | 1_1:-18369572 | Msa0012220:CDS |
| TCAATTGCGGCTCAAAGTGC+TGG | 0.456627 | 1_1:-18368446 | Msa0012220:CDS |
| ATATGACCTCTTGCAGAAAG+AGG | 0.457566 | 1_1:-18368011 | Msa0012220:CDS |
| GAAGAGCTGTCAAAGGTTGA+TGG | 0.458450 | 1_1:-18369841 | Msa0012220:CDS |
| TGTTCAGTTTGCCTTGGCCA+AGG | 0.461756 | 1_1:-18369318 | Msa0012220:CDS |
| GAATTTGAGTAATGGGTTTG+AGG | 0.462825 | 1_1:+18373714 | None:intergenic |
| TATCAACTCCACCTAGTGAT+TGG | 0.463068 | 1_1:+18368341 | None:intergenic |
| TTTACCTTCCAGAAATTAGC+TGG | 0.469895 | 1_1:+18367645 | None:intergenic |
| CGATTAAGCTCCACTTTCAC+TGG | 0.472787 | 1_1:+18373132 | None:intergenic |
| TTGAGGCAAAGAAGATGAGA+AGG | 0.474623 | 1_1:-18367778 | Msa0012220:CDS |
| AAGTGCTGGAGGAGAGTTTG+AGG | 0.474656 | 1_1:-18368432 | Msa0012220:CDS |
| CGGAGGAGCGGTGGCGACGC+CGG | 0.479934 | 1_1:-18373268 | Msa0012220:CDS |
| AAAACACTTAATAGAGAGTT+GGG | 0.481831 | 1_1:-18368871 | Msa0012220:CDS |
| TGATGGCAAGCTAAAATTAA+CGG | 0.487466 | 1_1:-18369824 | Msa0012220:CDS |
| AAAGACTGTTCAGTTTGCCT+TGG | 0.487825 | 1_1:-18369324 | Msa0012220:CDS |
| GGTTCTGAGCACTGTTTACA+GGG | 0.494170 | 1_1:+18367666 | None:intergenic |
| ATGATAGGGATGACCTGAGT+TGG | 0.494781 | 1_1:+18368266 | None:intergenic |
| CTGTCAGATGTTAGCAAGGA+AGG | 0.496607 | 1_1:-18367828 | Msa0012220:intron |
| CACCATGGAGGCCTTGGCCA+AGG | 0.496680 | 1_1:+18369307 | None:intergenic |
| TGATGAAAAGAAAGCATCAA+TGG | 0.497269 | 1_1:-18369671 | Msa0012220:CDS |
| TATAAGCTGAATTTGAGTAA+TGG | 0.499672 | 1_1:+18373706 | None:intergenic |
| CTGTTGTGGTTGCAAATGAA+TGG | 0.501031 | 1_1:-18368819 | Msa0012220:CDS |
| GGAAGTAGCTTCCATGGAAA+AGG | 0.509920 | 1_1:-18367756 | Msa0012220:CDS |
| GTTGTTGCCTTGAGGAAAGC+TGG | 0.511715 | 1_1:-18367989 | Msa0012220:CDS |
| CAATATTGAGCTAGATGATA+GGG | 0.513491 | 1_1:+18368252 | None:intergenic |
| AAACTAAACACTAACCTCAA+TGG | 0.514146 | 1_1:+18367928 | None:intergenic |
| TCAATATTGAGGAGTGCTAA+AGG | 0.517695 | 1_1:-18368238 | Msa0012220:CDS |
| TGAGGCAAAGAAGATGAGAA+GGG | 0.522446 | 1_1:-18367777 | Msa0012220:CDS |
| TGATGGTGGCTCAAGGACAC+TGG | 0.523950 | 1_1:-18368200 | Msa0012220:CDS |
| CAGCTTCTTTGGATTTGGTG+AGG | 0.524790 | 1_1:+18369363 | None:intergenic |
| GACACTGGAAAGAAGTAAAA+CGG | 0.525209 | 1_1:-18368185 | Msa0012220:CDS |
| AAGCGGTTCAGCAATATAAA+GGG | 0.526321 | 1_1:-18367689 | Msa0012220:CDS |
| GAGAAGGGAAGTAGCTTCCA+TGG | 0.527885 | 1_1:-18367762 | Msa0012220:CDS |
| TCTTCTCGTCGCCAATCACT+AGG | 0.528739 | 1_1:-18368352 | Msa0012220:CDS |
| GAATTTGAATGCGCGAGTGA+GGG | 0.529120 | 1_1:-18373332 | Msa0012220:five_prime_UTR |
| AGCAAACAGGGTAGCTGTTG+TGG | 0.529953 | 1_1:-18368833 | Msa0012220:CDS |
| CGGTTCGGATCCAGTGAAAG+TGG | 0.533833 | 1_1:-18373142 | Msa0012220:CDS |
| GAGGGTCCATGCTGCTCAGA+AGG | 0.534386 | 1_1:-18369617 | Msa0012220:CDS |
| GGACAGAATGCATAGACAAA+AGG | 0.539722 | 1_1:-18369110 | Msa0012220:CDS |
| TATCATCTAGCTCAATATTG+AGG | 0.541720 | 1_1:-18368249 | Msa0012220:CDS |
| GAAACAGATTGAGATTTGCC+AGG | 0.542161 | 1_1:-18369252 | Msa0012220:intron |
| GATAGGGATGACCTGAGTTG+GGG | 0.546206 | 1_1:+18368268 | None:intergenic |
| TTGCAGCAGAAGCTACTCTT+CGG | 0.548174 | 1_1:-18369639 | Msa0012220:CDS |
| TTGCTGCTGCACCACCTGCA+AGG | 0.548940 | 1_1:+18369035 | None:intergenic |
| TCGTTTCAGATCGACGGCGA+TGG | 0.553339 | 1_1:-18373307 | Msa0012220:exon |
| TGGTTGAATGAGTAACTTTG+AGG | 0.553498 | 1_1:+18368148 | None:intergenic |
| AGATAAAGATGATGCCATTG+AGG | 0.555603 | 1_1:-18367942 | Msa0012220:intron |
| AGTAGTCGCAGCACCGCAGA+GGG | 0.555775 | 1_1:-18368394 | Msa0012220:CDS |
| TGTTTGCTGTTACCTTGGCA+CGG | 0.558804 | 1_1:+18368848 | None:intergenic |
| AGCTTTAGTTCAGCCTCCAA+AGG | 0.559013 | 1_1:+18369559 | None:intergenic |
| AGGCTGAACTAAAGCTTGCT+CGG | 0.559493 | 1_1:-18369552 | Msa0012220:CDS |
| CTTATACAATTAGTCATCAA+AGG | 0.560562 | 1_1:-18373689 | Msa0012220:five_prime_UTR |
| GCATAGACAAAAGGTGGCAG+AGG | 0.560586 | 1_1:-18369101 | Msa0012220:CDS |
| AAGAAGTAAAACGGTGCTGA+GGG | 0.563039 | 1_1:-18368176 | Msa0012220:CDS |
| AGGGTTTCGTTTCAGATCGA+CGG | 0.563160 | 1_1:-18373313 | Msa0012220:five_prime_UTR |
| GCTGTCTGAAGAGCTGTCAA+AGG | 0.567280 | 1_1:-18369848 | Msa0012220:CDS |
| TAGAGAGTTGGGCCGTGCCA+AGG | 0.567676 | 1_1:-18368860 | Msa0012220:CDS |
| ATACTATCCTCTGTATCTGC+CGG | 0.568717 | 1_1:+18368046 | None:intergenic |
| AACGATCCAGAAAATGGTGC+CGG | 0.568721 | 1_1:+18373249 | None:intergenic |
| GGAGCAAGAATTGCTTCGAT+CGG | 0.572832 | 1_1:+18369580 | None:intergenic |
| AGAATTTGAATGCGCGAGTG+AGG | 0.579102 | 1_1:-18373333 | Msa0012220:five_prime_UTR |
| AGTGCTGGAGGAGAGTTTGA+GGG | 0.584451 | 1_1:-18368431 | Msa0012220:CDS |
| CAGCAGAAGCTACTCTTCGG+AGG | 0.586254 | 1_1:-18369636 | Msa0012220:CDS |
| GACCAAAGCCATGGAAGTTG+AGG | 0.587168 | 1_1:-18367795 | Msa0012220:CDS |
| CGGCTTGAGAATGAAGTTCG+AGG | 0.589218 | 1_1:-18373111 | Msa0012220:intron |
| GCAAGAATTGCTTCGATCGG+AGG | 0.593352 | 1_1:+18369583 | None:intergenic |
| TTCATGACCAGCTTTCCTCA+AGG | 0.597013 | 1_1:+18367982 | None:intergenic |
| CAACAACCTCTTTCTGCAAG+AGG | 0.598042 | 1_1:+18368005 | None:intergenic |
| CTATCCTCTGTATCTGCCGG+TGG | 0.602400 | 1_1:+18368049 | None:intergenic |
| CAGTAGTCGCAGCACCGCAG+AGG | 0.603621 | 1_1:-18368395 | Msa0012220:CDS |
| CATCATCCTTCTGAGCAGCA+TGG | 0.604557 | 1_1:+18369611 | None:intergenic |
| AGAAAGAGGTTGTTGCCTTG+AGG | 0.604922 | 1_1:-18367997 | Msa0012220:CDS |
| TTTCAGATCGACGGCGATGG+AGG | 0.606162 | 1_1:-18373304 | Msa0012220:exon |
| GTTCATACTTCTTCCCTCTG+CGG | 0.608964 | 1_1:+18368381 | None:intergenic |
| ATAGGGATGACCTGAGTTGG+GGG | 0.612021 | 1_1:+18368269 | None:intergenic |
| AAGCGTTGAGGCATTCTGAA+CGG | 0.613362 | 1_1:-18372953 | Msa0012220:CDS |
| CAGAATGCATAGACAAAAGG+TGG | 0.613852 | 1_1:-18369107 | Msa0012220:CDS |
| CTTCCCACCGGCAGATACAG+AGG | 0.614204 | 1_1:-18368053 | Msa0012220:CDS |
| CTTGGCCAAGGCCTCCATGG+TGG | 0.617740 | 1_1:-18369306 | Msa0012220:CDS |
| AAGAGGTCATATAAAACACT+TGG | 0.618174 | 1_1:+18368022 | None:intergenic |
| AGCAGAAGCTACTCTTCGGA+GGG | 0.619468 | 1_1:-18369635 | Msa0012220:CDS |
| ACTAAAGCTTGCTCGGCAAG+AGG | 0.620295 | 1_1:-18369545 | Msa0012220:intron |
| AAAGAAGTAAAACGGTGCTG+AGG | 0.622180 | 1_1:-18368177 | Msa0012220:CDS |
| TTACGGCGACGGAGGAGCGG+TGG | 0.622998 | 1_1:-18373277 | Msa0012220:CDS |
| AAGTCATGCCTGTCAAACAA+TGG | 0.623263 | 1_1:-18368780 | Msa0012220:CDS |
| CTCTCGAAGAAACCAAAGAG+AGG | 0.624352 | 1_1:-18368123 | Msa0012220:CDS |
| GAGGCGGATGATAATTGGAA+AGG | 0.624926 | 1_1:-18368100 | Msa0012220:CDS |
| AGATACGTTGACCAAAGCCA+TGG | 0.625101 | 1_1:-18367804 | Msa0012220:CDS |
| AGAAACCAAAGAGAGGGAGG+CGG | 0.626852 | 1_1:-18368116 | Msa0012220:CDS |
| GAGGAGATTTACGGCGACGG+AGG | 0.631996 | 1_1:-18373285 | Msa0012220:CDS |
| GTGCTGGAGGAGAGTTTGAG+GGG | 0.632505 | 1_1:-18368430 | Msa0012220:CDS |
| TTATCTGTCAGATGTTAGCA+AGG | 0.633097 | 1_1:-18367832 | Msa0012220:intron |
| AAAGCTCACCCAAACTGTGA+GGG | 0.633154 | 1_1:-18369074 | Msa0012220:CDS |
| TCTCGAAGAAACCAAAGAGA+GGG | 0.633390 | 1_1:-18368122 | Msa0012220:CDS |
| GAGTTCATGAATTTGTTGCA+CGG | 0.637392 | 1_1:-18373162 | Msa0012220:CDS |
| AGTAGCTTCCATGGAAAAGG+AGG | 0.639443 | 1_1:-18367753 | Msa0012220:CDS |
| AGAACCAGCTAATTTCTGGA+AGG | 0.641246 | 1_1:-18367649 | Msa0012220:CDS |
| TGCCAAGGTAACAGCAAACA+GGG | 0.644482 | 1_1:-18368845 | Msa0012220:CDS |
| GATTTACGGCGACGGAGGAG+CGG | 0.644818 | 1_1:-18373280 | Msa0012220:CDS |
| ATGCAGTTAGAGATTATCAA+CGG | 0.649753 | 1_1:-18369012 | Msa0012220:CDS |
| TATCCTCTGTATCTGCCGGT+GGG | 0.651445 | 1_1:+18368050 | None:intergenic |
| CGAAGAAACCAAAGAGAGGG+AGG | 0.655642 | 1_1:-18368119 | Msa0012220:CDS |
| GAAGAGTCAGTCCTTGCAGG+TGG | 0.658177 | 1_1:-18369046 | Msa0012220:CDS |
| AAAAGCTCACCCAAACTGTG+AGG | 0.659214 | 1_1:-18369075 | Msa0012220:CDS |
| ATGGAGGAGATTTACGGCGA+CGG | 0.663204 | 1_1:-18373288 | Msa0012220:CDS |
| TAGGGATGACCTGAGTTGGG+GGG | 0.667418 | 1_1:+18368270 | None:intergenic |
| AAGCTGAGATTAAAGCGTTG+AGG | 0.667550 | 1_1:-18372965 | Msa0012220:CDS |
| TAAGCCAAATGACTTCCCAC+CGG | 0.676407 | 1_1:-18368065 | Msa0012220:CDS |
| AGTTTGAGGGGAAATTCTAG+CGG | 0.678639 | 1_1:-18368418 | Msa0012220:CDS |
| TCTCGTCGCCAATCACTAGG+TGG | 0.679433 | 1_1:-18368349 | Msa0012220:CDS |
| TTGGAGATCATCCACCATGG+AGG | 0.683506 | 1_1:+18369295 | None:intergenic |
| AGAACTTCGTCGAGAAGACG+CGG | 0.686070 | 1_1:-18373216 | Msa0012220:CDS |
| GAGGGAAGAAGTATGAACAA+TGG | 0.689751 | 1_1:-18368376 | Msa0012220:CDS |
| ATTGCGGCTCAAAGTGCTGG+AGG | 0.694049 | 1_1:-18368443 | Msa0012220:CDS |
| TACAAGAGAACAGAGCAAAG+CGG | 0.698034 | 1_1:-18367706 | Msa0012220:CDS |
| AGAAGTAAAACGGTGCTGAG+GGG | 0.712185 | 1_1:-18368175 | Msa0012220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAACATAATAAACAAA+TGG | + | chr1_1:18368718-18368737 | None:intergenic | 10.0% |
| !!! | TATGTTTTTTTTTTTTTTTG+GGG | - | chr1_1:18368727-18368746 | Msa0012220:intron | 10.0% |
| !!! | ATTATAACATTAATTTTACA+TGG | - | chr1_1:18372440-18372459 | Msa0012220:intron | 10.0% |
| !!! | TTTTTTATTTTTATTTTTGC+AGG | - | chr1_1:18372886-18372905 | Msa0012220:intron | 10.0% |
| !!! | TAAGAAAAGTGTATAAATAA+AGG | - | chr1_1:18369531-18369550 | Msa0012220:intron | 15.0% |
| !!! | AAGAAAAGTGTATAAATAAA+GGG | - | chr1_1:18369532-18369551 | Msa0012220:intron | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr1_1:18369596-18369615 | Msa0012220:CDS | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr1_1:18369597-18369616 | Msa0012220:CDS | 15.0% |
| !!! | TTCTCAATTGTTGTTATTTT+TGG | - | chr1_1:18368468-18368487 | Msa0012220:intron | 20.0% |
| !!! | TCTTTTAGCATATCAAATAT+CGG | + | chr1_1:18369366-18369385 | None:intergenic | 20.0% |
| !!! | ATATTTTTAATTAGTGCTCT+TGG | - | chr1_1:18369449-18369468 | Msa0012220:intron | 20.0% |
| !!! | AGAAAAGTGTATAAATAAAG+GGG | - | chr1_1:18369533-18369552 | Msa0012220:intron | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr1_1:18369556-18369575 | Msa0012220:CDS | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | - | chr1_1:18369629-18369648 | Msa0012220:CDS | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | - | chr1_1:18369630-18369649 | Msa0012220:CDS | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr1_1:18369666-18369685 | Msa0012220:CDS | 20.0% |
| !!! | AATCGTGTTATTCTTATTAA+AGG | - | chr1_1:18369847-18369866 | Msa0012220:CDS | 20.0% |
| !!! | ATCGTGTTATTCTTATTAAA+GGG | - | chr1_1:18369848-18369867 | Msa0012220:CDS | 20.0% |
| !! | AAAAAATATTTCCCCATAAT+AGG | - | chr1_1:18370165-18370184 | Msa0012220:intron | 20.0% |
| !! | CAACACAACATTTAATATTT+GGG | + | chr1_1:18370644-18370663 | None:intergenic | 20.0% |
| !! | TCAACACAACATTTAATATT+TGG | + | chr1_1:18370645-18370664 | None:intergenic | 20.0% |
| !! | TAATTACTGAAGTTGAATTA+GGG | + | chr1_1:18371597-18371616 | None:intergenic | 20.0% |
| !! | ATAATTACTGAAGTTGAATT+AGG | + | chr1_1:18371598-18371617 | None:intergenic | 20.0% |
| !! | AATATAAACTCAAAAGAACA+AGG | + | chr1_1:18371848-18371867 | None:intergenic | 20.0% |
| !! | TTATAATCAATAAAGCAACT+GGG | + | chr1_1:18372427-18372446 | None:intergenic | 20.0% |
| !!! | ACTAGTTCTGAAATTATTTA+AGG | - | chr1_1:18372857-18372876 | Msa0012220:intron | 20.0% |
| ! | ATAAGCTGAATTTGAGTAAT+GGG | + | chr1_1:18367658-18367677 | None:intergenic | 25.0% |
| ! | TATAAGCTGAATTTGAGTAA+TGG | + | chr1_1:18367659-18367678 | None:intergenic | 25.0% |
| ! | CTTATACAATTAGTCATCAA+AGG | - | chr1_1:18367673-18367692 | Msa0012220:CDS | 25.0% |
| !!! | TGTTTGTTTTTGTGTAGATA+AGG | - | chr1_1:18368353-18368372 | Msa0012220:CDS | 25.0% |
| ! | AGATAAGGATAGAGAATTAT+CGG | - | chr1_1:18368368-18368387 | Msa0012220:CDS | 25.0% |
| ! | TAATCGCTAATTTACATGTT+GGG | - | chr1_1:18368947-18368966 | Msa0012220:intron | 25.0% |
| !!! | CATTTGTTTGTTTTAAGTGA+GGG | - | chr1_1:18369099-18369118 | Msa0012220:CDS | 25.0% |
| ! | GAAACTGTCTCATATAAATT+TGG | - | chr1_1:18369234-18369253 | Msa0012220:intron | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | - | chr1_1:18369555-18369574 | Msa0012220:CDS | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr1_1:18369665-18369684 | Msa0012220:CDS | 25.0% |
| ! | AATTAATGCTTCATAGGATT+TGG | + | chr1_1:18369779-18369798 | None:intergenic | 25.0% |
| ! | AAGTCTAATTAATGCTTCAT+AGG | + | chr1_1:18369785-18369804 | None:intergenic | 25.0% |
| ! | TGTTAACTTCTTGATACTAT+CGG | - | chr1_1:18369936-18369955 | Msa0012220:intron | 25.0% |
| ! | AATCTCAAGACTTGATTTAT+AGG | + | chr1_1:18369988-18370007 | None:intergenic | 25.0% |
| !!! | TTCAACTGTTTTATTGTTAG+AGG | - | chr1_1:18370006-18370025 | Msa0012220:intron | 25.0% |
| ! | AAGGAAAAAAATGGAAAGTT+AGG | - | chr1_1:18370317-18370336 | Msa0012220:intron | 25.0% |
| !! | AAATGAAAAGCTTTGATATG+TGG | - | chr1_1:18370563-18370582 | Msa0012220:intron | 25.0% |
| !! | AGTAAATTTTTCTTCTAAGC+TGG | + | chr1_1:18370604-18370623 | None:intergenic | 25.0% |
| !!! | ATTTGGGTTGTATTATAGTT+TGG | + | chr1_1:18370628-18370647 | None:intergenic | 25.0% |
| ! | TGAATCATTGAAGTGAAATT+TGG | - | chr1_1:18370730-18370749 | Msa0012220:intron | 25.0% |
| ! | GAATCATTGAAGTGAAATTT+GGG | - | chr1_1:18370731-18370750 | Msa0012220:intron | 25.0% |
| !!! | AAAAGATGAGAGTTTTGTAT+TGG | - | chr1_1:18370772-18370791 | Msa0012220:intron | 25.0% |
| !!! | AAAGATGAGAGTTTTGTATT+GGG | - | chr1_1:18370773-18370792 | Msa0012220:intron | 25.0% |
| ! | TCTAATCTCTCCTAATTATT+TGG | + | chr1_1:18370903-18370922 | None:intergenic | 25.0% |
| ! | CTATCATTGAATTTGATTCA+TGG | - | chr1_1:18370933-18370952 | Msa0012220:intron | 25.0% |
| !!! | TGTTTTCAAGAAGACTTAAA+TGG | - | chr1_1:18371074-18371093 | Msa0012220:intron | 25.0% |
| !!! | TAGTTTTTGAGAAGATAGTA+AGG | - | chr1_1:18371105-18371124 | Msa0012220:intron | 25.0% |
| ! | ACTCCTAATCCTAAATAAAT+AGG | - | chr1_1:18371160-18371179 | Msa0012220:intron | 25.0% |
| ! | CTCCTAATCCTAAATAAATA+GGG | - | chr1_1:18371161-18371180 | Msa0012220:intron | 25.0% |
| !! | TTCCCTATTTATTTAGGATT+AGG | + | chr1_1:18371166-18371185 | None:intergenic | 25.0% |
| ! | AAAGGTCAATGTCAAATAAA+CGG | + | chr1_1:18371369-18371388 | None:intergenic | 25.0% |
| ! | ACATGAAATGTAACTTATCT+TGG | - | chr1_1:18371471-18371490 | Msa0012220:intron | 25.0% |
| ! | CAGTAATTATTTGTGTTCTT+AGG | - | chr1_1:18371608-18371627 | Msa0012220:intron | 25.0% |
| ! | TAATTATTTGTGTTCTTAGG+TGG | - | chr1_1:18371611-18371630 | Msa0012220:intron | 25.0% |
| !! | TGTAATCATGCAACTTTTAA+CGG | - | chr1_1:18372188-18372207 | Msa0012220:intron | 25.0% |
| ! | GTTATAATCAATAAAGCAAC+TGG | + | chr1_1:18372428-18372447 | None:intergenic | 25.0% |
| ! | TGGTTTATTTCACATTCTTT+AGG | - | chr1_1:18372460-18372479 | Msa0012220:intron | 25.0% |
| ! | AAAAACACTTAATAGAGAGT+TGG | - | chr1_1:18372490-18372509 | Msa0012220:intron | 25.0% |
| ! | AAAACACTTAATAGAGAGTT+GGG | - | chr1_1:18372491-18372510 | Msa0012220:intron | 25.0% |
| ! | TTATTGAACTGCATTCTTAT+AGG | - | chr1_1:18372728-18372747 | Msa0012220:intron | 25.0% |
| ! | TATTGAACTGCATTCTTATA+GGG | - | chr1_1:18372729-18372748 | Msa0012220:intron | 25.0% |
| ! | ATCTCAAAATTAACCTCTAA+TGG | - | chr1_1:18373046-18373065 | Msa0012220:intron | 25.0% |
| ! | CAATTATCAATAAGATGTCA+AGG | + | chr1_1:18373490-18373509 | None:intergenic | 25.0% |
| ! | TGTTTTCTCTCTCTAGATTA+AGG | + | chr1_1:18367877-18367896 | None:intergenic | 30.0% |
| AATTCAGCTGAAAAACTCTT+CGG | + | chr1_1:18368296-18368315 | None:intergenic | 30.0% | |
| ATGAAGCACGAATACATATA+TGG | - | chr1_1:18368535-18368554 | Msa0012220:intron | 30.0% | |
| TAACTTATGTCTGTAAGACT+TGG | - | chr1_1:18368784-18368803 | Msa0012220:CDS | 30.0% | |
| TAAAAACTCACACACACAAA+GGG | + | chr1_1:18368890-18368909 | None:intergenic | 30.0% | |
| GTAATCGCTAATTTACATGT+TGG | - | chr1_1:18368946-18368965 | Msa0012220:intron | 30.0% | |
| AGGAATTGAGCTTGTAAATA+TGG | - | chr1_1:18368981-18369000 | Msa0012220:intron | 30.0% | |
| !! | GGTACTATTATTTTGTTTCC+TGG | - | chr1_1:18369002-18369021 | Msa0012220:CDS | 30.0% |
| !! | ACTATTATTTTGTTTCCTGG+TGG | - | chr1_1:18369005-18369024 | Msa0012220:CDS | 30.0% |
| !! | CTATTATTTTGTTTCCTGGT+GGG | - | chr1_1:18369006-18369025 | Msa0012220:CDS | 30.0% |
| CCTCACTTAAAACAAACAAA+TGG | + | chr1_1:18369101-18369120 | None:intergenic | 30.0% | |
| !!! | CCATTTGTTTGTTTTAAGTG+AGG | - | chr1_1:18369098-18369117 | Msa0012220:CDS | 30.0% |
| TATCGATGCAAATGTCAAAA+GGG | + | chr1_1:18369150-18369169 | None:intergenic | 30.0% | |
| GAAATTGCACAAAAATGTGA+AGG | + | chr1_1:18369186-18369205 | None:intergenic | 30.0% | |
| ACTGAGAAACTTTCCTTATA+TGG | + | chr1_1:18369314-18369333 | None:intergenic | 30.0% | |
| CAAAGTAAGTCAATTATACC+GGG | + | chr1_1:18369496-18369515 | None:intergenic | 30.0% | |
| CCAAAGTAAGTCAATTATAC+CGG | + | chr1_1:18369497-18369516 | None:intergenic | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | - | chr1_1:18369540-18369559 | Msa0012220:intron | 30.0% | |
| ! | TTGAAATGGGTCAGTTATTT+TGG | - | chr1_1:18369643-18369662 | Msa0012220:CDS | 30.0% |
| !! | TGAAATGGGTCAGTTATTTT+GGG | - | chr1_1:18369644-18369663 | Msa0012220:CDS | 30.0% |
| GAACCAATACAAAAAGATGA+TGG | + | chr1_1:18370215-18370234 | None:intergenic | 30.0% | |
| !!! | CATCTTTTTGTATTGGTTCT+CGG | - | chr1_1:18370216-18370235 | Msa0012220:intron | 30.0% |
| AAAAATGGAAAGTTAGGACA+TGG | - | chr1_1:18370323-18370342 | Msa0012220:intron | 30.0% | |
| ! | GAAAATTTAAAGTGAGCGTA+TGG | - | chr1_1:18370381-18370400 | Msa0012220:intron | 30.0% |
| ! | TCAATTTTCACCTCAAAACT+AGG | + | chr1_1:18370435-18370454 | None:intergenic | 30.0% |
| GTCTCTATCATATGTATAGT+GGG | + | chr1_1:18370496-18370515 | None:intergenic | 30.0% | |
| TGTCTCTATCATATGTATAG+TGG | + | chr1_1:18370497-18370516 | None:intergenic | 30.0% | |
| TAAACTAGAAGATACAAGCA+AGG | - | chr1_1:18370527-18370546 | Msa0012220:intron | 30.0% | |
| !! | TTGAGATGAGAGTATTATGA+TGG | - | chr1_1:18370702-18370721 | Msa0012220:intron | 30.0% |
| AGGAAACTAGCAAATTAGTA+GGG | + | chr1_1:18371033-18371052 | None:intergenic | 30.0% | |
| AAGGAAACTAGCAAATTAGT+AGG | + | chr1_1:18371034-18371053 | None:intergenic | 30.0% | |
| TCTCATTTACTCAAAGACTA+AGG | + | chr1_1:18371053-18371072 | None:intergenic | 30.0% | |
| GTCTTATATCCCTATACATA+GGG | + | chr1_1:18371142-18371161 | None:intergenic | 30.0% | |
| ! | AGTCTTATATCCCTATACAT+AGG | + | chr1_1:18371143-18371162 | None:intergenic | 30.0% |
| CCTGATTTCCCTATTTATTT+AGG | + | chr1_1:18371172-18371191 | None:intergenic | 30.0% | |
| CCTAAATAAATAGGGAAATC+AGG | - | chr1_1:18371169-18371188 | Msa0012220:intron | 30.0% | |
| AAAAAGTTTACGCATGATAG+AGG | + | chr1_1:18371394-18371413 | None:intergenic | 30.0% | |
| TGATGGCAAGCTAAAATTAA+CGG | - | chr1_1:18371538-18371557 | Msa0012220:intron | 30.0% | |
| !! | TGATGAAAAGAAAGCATCAA+TGG | - | chr1_1:18371691-18371710 | Msa0012220:intron | 30.0% |
| TGAGTTTATATTGCAATACC+TGG | - | chr1_1:18371856-18371875 | Msa0012220:intron | 30.0% | |
| ! | GGCATATGACTAATGATTTT+TGG | - | chr1_1:18371909-18371928 | Msa0012220:intron | 30.0% |
| TTGTAGTTTAGCAATCTGTA+GGG | + | chr1_1:18371956-18371975 | None:intergenic | 30.0% | |
| !! | TCAGCTCTTGATTTTTGTTT+TGG | + | chr1_1:18372089-18372108 | None:intergenic | 30.0% |
| TCAGGAAGAAAACAAAATCT+TGG | - | chr1_1:18372231-18372250 | Msa0012220:intron | 30.0% | |
| ATGCAGTTAGAGATTATCAA+CGG | - | chr1_1:18372350-18372369 | Msa0012220:intron | 30.0% | |
| ATTTAGGTGAAGACAAAGAA+AGG | + | chr1_1:18372694-18372713 | None:intergenic | 30.0% | |
| ATTGAACTGCATTCTTATAG+GGG | - | chr1_1:18372730-18372749 | Msa0012220:intron | 30.0% | |
| CACAATTGAAAGTAATGATC+TGG | - | chr1_1:18372811-18372830 | Msa0012220:intron | 30.0% | |
| !!! | AATTTCAGAACTAGTTTTCG+AGG | + | chr1_1:18372852-18372871 | None:intergenic | 30.0% |
| TGCAGGAAAAATATCAATTG+CGG | - | chr1_1:18372903-18372922 | Msa0012220:intron | 30.0% | |
| CAATATTGAGCTAGATGATA+GGG | + | chr1_1:18373113-18373132 | None:intergenic | 30.0% | |
| TCAATATTGAGCTAGATGAT+AGG | + | chr1_1:18373114-18373133 | None:intergenic | 30.0% | |
| ! | TATCATCTAGCTCAATATTG+AGG | - | chr1_1:18373113-18373132 | Msa0012220:CDS | 30.0% |
| ! | GGAACATCTAAATCTTTTGA+TGG | - | chr1_1:18373145-18373164 | Msa0012220:CDS | 30.0% |
| ! | ACATCTAAATCTTTTGATGG+TGG | - | chr1_1:18373148-18373167 | Msa0012220:CDS | 30.0% |
| GATAATTGGAAAGGAAATTC+AGG | - | chr1_1:18373271-18373290 | Msa0012220:CDS | 30.0% | |
| AAGAGGTCATATAAAACACT+TGG | + | chr1_1:18373343-18373362 | None:intergenic | 30.0% | |
| ! | TGGCATCATCTTTATCTTTT+AGG | + | chr1_1:18373417-18373436 | None:intergenic | 30.0% |
| AAACTAAACACTAACCTCAA+TGG | + | chr1_1:18373437-18373456 | None:intergenic | 30.0% | |
| !! | GAATTTGAGTAATGGGTTTG+AGG | + | chr1_1:18367651-18367670 | None:intergenic | 35.0% |
| !! | TGAGTGATTGTGACTTGTTT+GGG | + | chr1_1:18367733-18367752 | None:intergenic | 35.0% |
| TCTCTAAACGATCCAGAAAA+TGG | + | chr1_1:18368122-18368141 | None:intergenic | 35.0% | |
| ! | TTTTCTGGATCGTTTAGAGA+AGG | - | chr1_1:18368122-18368141 | Msa0012220:CDS | 35.0% |
| !! | GAGTTCATGAATTTGTTGCA+CGG | - | chr1_1:18368200-18368219 | Msa0012220:CDS | 35.0% |
| ! | TTACATGTAAGTGTCGTGTA+TGG | + | chr1_1:18368564-18368583 | None:intergenic | 35.0% |
| ACGACACTTACATGTAAACA+CGG | - | chr1_1:18368567-18368586 | Msa0012220:CDS | 35.0% | |
| TTCAATGTAATCGCATGAGT+CGG | - | chr1_1:18368615-18368634 | Msa0012220:CDS | 35.0% | |
| !! | AATGCTGAGATTTGTTAGGT+TGG | - | chr1_1:18368826-18368845 | Msa0012220:CDS | 35.0% |
| !!! | GTTAGGTTGGATATTTTTCG+TGG | - | chr1_1:18368839-18368858 | Msa0012220:CDS | 35.0% |
| AAAAACTCACACACACAAAG+GGG | + | chr1_1:18368889-18368908 | None:intergenic | 35.0% | |
| CTAAAAACTCACACACACAA+AGG | + | chr1_1:18368891-18368910 | None:intergenic | 35.0% | |
| ! | CTTTGTGTGTGTGAGTTTTT+AGG | - | chr1_1:18368889-18368908 | Msa0012220:intron | 35.0% |
| GCAACTTCAAAGTTCAAACA+TGG | + | chr1_1:18369053-18369072 | None:intergenic | 35.0% | |
| TTGAAGTTGCAGCTGAAAAA+TGG | - | chr1_1:18369063-18369082 | Msa0012220:CDS | 35.0% | |
| TGAAGTTGCAGCTGAAAAAT+GGG | - | chr1_1:18369064-18369083 | Msa0012220:CDS | 35.0% | |
| !!! | TTGTTTGTTTTAAGTGAGGG+AGG | - | chr1_1:18369102-18369121 | Msa0012220:CDS | 35.0% |
| !!! | TGTTTGTTTTAAGTGAGGGA+GGG | - | chr1_1:18369103-18369122 | Msa0012220:CDS | 35.0% |
| ATCGATGCAAATGTCAAAAG+GGG | + | chr1_1:18369149-18369168 | None:intergenic | 35.0% | |
| ! | GTATCGATGCAAATGTCAAA+AGG | + | chr1_1:18369151-18369170 | None:intergenic | 35.0% |
| !! | TGTGTTGACTTGACCATATA+AGG | - | chr1_1:18369298-18369317 | Msa0012220:CDS | 35.0% |
| GCATATCAAATATCGGACAA+TGG | + | chr1_1:18369359-18369378 | None:intergenic | 35.0% | |
| ! | CCGGTATAATTGACTTACTT+TGG | - | chr1_1:18369494-18369513 | Msa0012220:intron | 35.0% |
| AGAAAATGGGTCAGTTATTC+CGG | - | chr1_1:18369679-18369698 | Msa0012220:CDS | 35.0% | |
| AGGGAGGATAAAGGAATAAA+AGG | + | chr1_1:18369875-18369894 | None:intergenic | 35.0% | |
| TTTATTCCTTTATCCTCCCT+TGG | - | chr1_1:18369875-18369894 | Msa0012220:intron | 35.0% | |
| ! | TTGCATTCACTCTTAGTTCT+AGG | - | chr1_1:18369909-18369928 | Msa0012220:intron | 35.0% |
| GTTGTGCTTGTATAGAGAAA+AGG | - | chr1_1:18370108-18370127 | Msa0012220:intron | 35.0% | |
| ! | GAGCCATCATCTTTTTGTAT+TGG | - | chr1_1:18370209-18370228 | Msa0012220:intron | 35.0% |
| ! | TGACACAATGAATGCTTTTG+TGG | - | chr1_1:18370268-18370287 | Msa0012220:intron | 35.0% |
| ! | TGATATAGTCTTAGAGTGCA+CGG | - | chr1_1:18370292-18370311 | Msa0012220:intron | 35.0% |
| !!! | GACTACAAATCCTAGTTTTG+AGG | - | chr1_1:18370422-18370441 | Msa0012220:intron | 35.0% |
| !! | TCATATGTATAGTGGGCAAA+AGG | + | chr1_1:18370489-18370508 | None:intergenic | 35.0% |
| AAGCCACAGACCAAATAATT+AGG | - | chr1_1:18370890-18370909 | Msa0012220:intron | 35.0% | |
| TCTCCTAATTATTTGGTCTG+TGG | + | chr1_1:18370896-18370915 | None:intergenic | 35.0% | |
| TGATTCATGGCAAGACATTA+TGG | - | chr1_1:18370946-18370965 | Msa0012220:intron | 35.0% | |
| TAAACCCTAACCCTATGTAT+AGG | - | chr1_1:18371129-18371148 | Msa0012220:intron | 35.0% | |
| AAACCCTAACCCTATGTATA+GGG | - | chr1_1:18371130-18371149 | Msa0012220:intron | 35.0% | |
| TATCCCTATACATAGGGTTA+GGG | + | chr1_1:18371136-18371155 | None:intergenic | 35.0% | |
| ATATCCCTATACATAGGGTT+AGG | + | chr1_1:18371137-18371156 | None:intergenic | 35.0% | |
| CATTAGTCATATGCCAGATT+CGG | + | chr1_1:18371904-18371923 | None:intergenic | 35.0% | |
| CTTGTAGTTTAGCAATCTGT+AGG | + | chr1_1:18371957-18371976 | None:intergenic | 35.0% | |
| ! | AATCATGCAACTTTTAACGG+AGG | - | chr1_1:18372191-18372210 | Msa0012220:intron | 35.0% |
| GTTTCATCATCACTTCTTTC+AGG | - | chr1_1:18372213-18372232 | Msa0012220:intron | 35.0% | |
| AATGAGTGCAAGCAGTATTT+AGG | + | chr1_1:18372710-18372729 | None:intergenic | 35.0% | |
| TTGAACTGCATTCTTATAGG+GGG | - | chr1_1:18372731-18372750 | Msa0012220:intron | 35.0% | |
| !! | GTTTTCGAGGTTAACAGATA+GGG | + | chr1_1:18372839-18372858 | None:intergenic | 35.0% |
| !! | AGTTTTCGAGGTTAACAGAT+AGG | + | chr1_1:18372840-18372859 | None:intergenic | 35.0% |
| !! | TCAATATTGAGGAGTGCTAA+AGG | - | chr1_1:18373124-18373143 | Msa0012220:CDS | 35.0% |
| GACACTGGAAAGAAGTAAAA+CGG | - | chr1_1:18373177-18373196 | Msa0012220:CDS | 35.0% | |
| TGGTTGAATGAGTAACTTTG+AGG | + | chr1_1:18373217-18373236 | None:intergenic | 35.0% | |
| AGATAAAGATGATGCCATTG+AGG | - | chr1_1:18373420-18373439 | Msa0012220:five_prime_UTR | 35.0% | |
| TTATCTGTCAGATGTTAGCA+AGG | - | chr1_1:18373530-18373549 | Msa0012220:five_prime_UTR | 35.0% | |
| AAAGCGGTTCAGCAATATAA+AGG | - | chr1_1:18373672-18373691 | Msa0012220:five_prime_UTR | 35.0% | |
| AAGCGGTTCAGCAATATAAA+GGG | - | chr1_1:18373673-18373692 | Msa0012220:five_prime_UTR | 35.0% | |
| TTTACCTTCCAGAAATTAGC+TGG | + | chr1_1:18373720-18373739 | None:intergenic | 35.0% | |
| !! | CTGAGTGATTGTGACTTGTT+TGG | + | chr1_1:18367734-18367753 | None:intergenic | 40.0% |
| !!! | AAGCGCTTTGTGTTTTGAAG+AGG | + | chr1_1:18367819-18367838 | None:intergenic | 40.0% |
| !! | CATGAATTTGTTGCACGGTT+CGG | - | chr1_1:18368205-18368224 | Msa0012220:CDS | 40.0% |
| CAGTGAAAGTGGAGCTTAAT+CGG | - | chr1_1:18368231-18368250 | Msa0012220:CDS | 40.0% | |
| !! | AAGCTGAGATTAAAGCGTTG+AGG | - | chr1_1:18368397-18368416 | Msa0012220:CDS | 40.0% |
| GAGAGAAAAAGCTGTTGAAG+AGG | - | chr1_1:18368434-18368453 | Msa0012220:CDS | 40.0% | |
| ! | CTTGGTTGACTTAGTTCAAC+TGG | - | chr1_1:18368802-18368821 | Msa0012220:CDS | 40.0% |
| ! | TGGCAATGCTGAGATTTGTT+AGG | - | chr1_1:18368822-18368841 | Msa0012220:CDS | 40.0% |
| !! | TGTGTGTGTGAGTTTTTAGG+TGG | - | chr1_1:18368892-18368911 | Msa0012220:intron | 40.0% |
| TCCTGGTGGGATCATATTAT+TGG | - | chr1_1:18369019-18369038 | Msa0012220:CDS | 40.0% | |
| ACCAATAATATGATCCCACC+AGG | + | chr1_1:18369023-18369042 | None:intergenic | 40.0% | |
| GTGGGATCATATTATTGGTG+TGG | - | chr1_1:18369024-18369043 | Msa0012220:CDS | 40.0% | |
| GAAGTTGCAGCTGAAAAATG+GGG | - | chr1_1:18369065-18369084 | Msa0012220:CDS | 40.0% | |
| !!! | GTTTGTTTTAAGTGAGGGAG+GGG | - | chr1_1:18369104-18369123 | Msa0012220:CDS | 40.0% |
| GTAAGTCAATTATACCGGGA+CGG | + | chr1_1:18369492-18369511 | None:intergenic | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | - | chr1_1:18369680-18369699 | Msa0012220:CDS | 40.0% | |
| TGTAAACCAAGGGAGGATAA+AGG | + | chr1_1:18369884-18369903 | None:intergenic | 40.0% | |
| TTATCCTCCCTTGGTTTACA+TGG | - | chr1_1:18369884-18369903 | Msa0012220:intron | 40.0% | |
| TGCAATGCCATGTAAACCAA+GGG | + | chr1_1:18369894-18369913 | None:intergenic | 40.0% | |
| ATGCAATGCCATGTAAACCA+AGG | + | chr1_1:18369895-18369914 | None:intergenic | 40.0% | |
| ACTACTAGCGTAAGAACAGA+AGG | - | chr1_1:18370133-18370152 | Msa0012220:intron | 40.0% | |
| GCTAGTTGTTCCTATCTAAG+AGG | - | chr1_1:18370242-18370261 | Msa0012220:intron | 40.0% | |
| ! | TGTGTCATTGCCTCTTAGAT+AGG | + | chr1_1:18370255-18370274 | None:intergenic | 40.0% |
| TGCACGGAGAAGGAAAAAAA+TGG | - | chr1_1:18370308-18370327 | Msa0012220:intron | 40.0% | |
| AAAGTTAGGACATGGAGATG+AGG | - | chr1_1:18370331-18370350 | Msa0012220:intron | 40.0% | |
| !! | AAAGGTACTTCAGAGACATG+TGG | + | chr1_1:18370471-18370490 | None:intergenic | 40.0% |
| GAAGAGCTAGCAAGAGATTA+AGG | - | chr1_1:18370670-18370689 | Msa0012220:intron | 40.0% | |
| ! | GTTTTGTATTGGGTCTCACT+TGG | - | chr1_1:18370783-18370802 | Msa0012220:intron | 40.0% |
| TATTGGGTCTCACTTGGTTT+GGG | - | chr1_1:18370789-18370808 | Msa0012220:intron | 40.0% | |
| TTACGCATGATAGAGGCAAA+AGG | + | chr1_1:18371387-18371406 | None:intergenic | 40.0% | |
| TAGGGCTCAAAGCAATACTT+TGG | + | chr1_1:18371579-18371598 | None:intergenic | 40.0% | |
| TAGTGCAGCTTCTTTGGATT+TGG | + | chr1_1:18372007-18372026 | None:intergenic | 40.0% | |
| TTCAAGTAGTGCAGCTTCTT+TGG | + | chr1_1:18372013-18372032 | None:intergenic | 40.0% | |
| AAAGACTGTTCAGTTTGCCT+TGG | - | chr1_1:18372038-18372057 | Msa0012220:intron | 40.0% | |
| GAAACAGATTGAGATTTGCC+AGG | - | chr1_1:18372110-18372129 | Msa0012220:intron | 40.0% | |
| GGACAGAATGCATAGACAAA+AGG | - | chr1_1:18372252-18372271 | Msa0012220:intron | 40.0% | |
| CAGAATGCATAGACAAAAGG+TGG | - | chr1_1:18372255-18372274 | Msa0012220:intron | 40.0% | |
| CTGTTGTGGTTGCAAATGAA+TGG | - | chr1_1:18372543-18372562 | Msa0012220:intron | 40.0% | |
| AAGTCATGCCTGTCAAACAA+TGG | - | chr1_1:18372582-18372601 | Msa0012220:intron | 40.0% | |
| TCTTCAAGCCATTGTTTGAC+AGG | + | chr1_1:18372593-18372612 | None:intergenic | 40.0% | |
| AGTTTGAGGGGAAATTCTAG+CGG | - | chr1_1:18372944-18372963 | Msa0012220:CDS | 40.0% | |
| ! | GAGGGAAGAAGTATGAACAA+TGG | - | chr1_1:18372986-18373005 | Msa0012220:CDS | 40.0% |
| TATCAACTCCACCTAGTGAT+TGG | + | chr1_1:18373024-18373043 | None:intergenic | 40.0% | |
| CTTAGGCAAGAATCCATTAG+AGG | + | chr1_1:18373062-18373081 | None:intergenic | 40.0% | |
| !!! | AATCTTTTGATGGTGGCTCA+AGG | - | chr1_1:18373155-18373174 | Msa0012220:CDS | 40.0% |
| ! | AAAGAAGTAAAACGGTGCTG+AGG | - | chr1_1:18373185-18373204 | Msa0012220:CDS | 40.0% |
| ! | AAGAAGTAAAACGGTGCTGA+GGG | - | chr1_1:18373186-18373205 | Msa0012220:CDS | 40.0% |
| ! | CTTTGGTTTCTTCGAGAGAT+TGG | + | chr1_1:18373237-18373256 | None:intergenic | 40.0% |
| TCTCGAAGAAACCAAAGAGA+GGG | - | chr1_1:18373240-18373259 | Msa0012220:CDS | 40.0% | |
| ATACTATCCTCTGTATCTGC+CGG | + | chr1_1:18373319-18373338 | None:intergenic | 40.0% | |
| ATATGACCTCTTGCAGAAAG+AGG | - | chr1_1:18373351-18373370 | Msa0012220:five_prime_UTR | 40.0% | |
| TTGAGGCAAAGAAGATGAGA+AGG | - | chr1_1:18373584-18373603 | Msa0012220:five_prime_UTR | 40.0% | |
| TGAGGCAAAGAAGATGAGAA+GGG | - | chr1_1:18373585-18373604 | Msa0012220:five_prime_UTR | 40.0% | |
| TACAAGAGAACAGAGCAAAG+CGG | - | chr1_1:18373656-18373675 | Msa0012220:five_prime_UTR | 40.0% | |
| ! | AGAACCAGCTAATTTCTGGA+AGG | - | chr1_1:18373713-18373732 | Msa0012220:five_prime_UTR | 40.0% |
| AGAATTTGAATGCGCGAGTG+AGG | - | chr1_1:18368029-18368048 | Msa0012220:CDS | 45.0% | |
| GAATTTGAATGCGCGAGTGA+GGG | - | chr1_1:18368030-18368049 | Msa0012220:CDS | 45.0% | |
| AGGGTTTCGTTTCAGATCGA+CGG | - | chr1_1:18368049-18368068 | Msa0012220:CDS | 45.0% | |
| AACGATCCAGAAAATGGTGC+CGG | + | chr1_1:18368116-18368135 | None:intergenic | 45.0% | |
| TTCTGCTAGACAGCAGAGTA+TGG | - | chr1_1:18368169-18368188 | Msa0012220:CDS | 45.0% | |
| CGATTAAGCTCCACTTTCAC+TGG | + | chr1_1:18368233-18368252 | None:intergenic | 45.0% | |
| !! | AAGCGTTGAGGCATTCTGAA+CGG | - | chr1_1:18368409-18368428 | Msa0012220:CDS | 45.0% |
| !! | GTGTTGGTGTCAAACACTGT+TGG | - | chr1_1:18368642-18368661 | Msa0012220:intron | 45.0% |
| ! | TGGTGTCAAACACTGTTGGA+CGG | - | chr1_1:18368646-18368665 | Msa0012220:intron | 45.0% |
| !!! | CATGTTGGGCTTGTTTTGTG+AGG | - | chr1_1:18368961-18368980 | Msa0012220:intron | 45.0% |
| AACATTTACTACCTCCGTCC+CGG | - | chr1_1:18369475-18369494 | Msa0012220:intron | 45.0% | |
| AATGCCATGTAAACCAAGGG+AGG | + | chr1_1:18369891-18369910 | None:intergenic | 45.0% | |
| ACTAGCGTAAGAACAGAAGG+TGG | - | chr1_1:18370136-18370155 | Msa0012220:intron | 45.0% | |
| TGTGCTGCAAGCCTATTATG+GGG | + | chr1_1:18370179-18370198 | None:intergenic | 45.0% | |
| CTGTGCTGCAAGCCTATTAT+GGG | + | chr1_1:18370180-18370199 | None:intergenic | 45.0% | |
| TAGGACATGGAGATGAGGTT+TGG | - | chr1_1:18370336-18370355 | Msa0012220:intron | 45.0% | |
| AGGACATGGAGATGAGGTTT+GGG | - | chr1_1:18370337-18370356 | Msa0012220:intron | 45.0% | |
| GTATTGGGTCTCACTTGGTT+TGG | - | chr1_1:18370788-18370807 | Msa0012220:intron | 45.0% | |
| !! | GACTCGTAAAAGCACTAGCA+AGG | - | chr1_1:18370825-18370844 | Msa0012220:intron | 45.0% |
| !! | TCGTAAAAGCACTAGCAAGG+AGG | - | chr1_1:18370828-18370847 | Msa0012220:intron | 45.0% |
| !! | CGTAAAAGCACTAGCAAGGA+GGG | - | chr1_1:18370829-18370848 | Msa0012220:intron | 45.0% |
| AGCAAGGAGGGTAGATCATA+TGG | - | chr1_1:18370841-18370860 | Msa0012220:intron | 45.0% | |
| AAGGAGGGTAGATCATATGG+AGG | - | chr1_1:18370844-18370863 | Msa0012220:intron | 45.0% | |
| GAAGAGCTGTCAAAGGTTGA+TGG | - | chr1_1:18371521-18371540 | Msa0012220:intron | 45.0% | |
| TTGCAGCAGAAGCTACTCTT+CGG | - | chr1_1:18371723-18371742 | Msa0012220:intron | 45.0% | |
| GGAGCAAGAATTGCTTCGAT+CGG | + | chr1_1:18371785-18371804 | None:intergenic | 45.0% | |
| CGAAGCAATTCTTGCTCCTT+TGG | - | chr1_1:18371787-18371806 | Msa0012220:intron | 45.0% | |
| AGCAATTCTTGCTCCTTTGG+AGG | - | chr1_1:18371790-18371809 | Msa0012220:intron | 45.0% | |
| ! | AGCTTTAGTTCAGCCTCCAA+AGG | + | chr1_1:18371806-18371825 | None:intergenic | 45.0% |
| ! | AGGCTGAACTAAAGCTTGCT+CGG | - | chr1_1:18371810-18371829 | Msa0012220:intron | 45.0% |
| ACCTGGCGAGAAAGAATTGA+TGG | - | chr1_1:18371873-18371892 | Msa0012220:intron | 45.0% | |
| TCCATCAATTCTTTCTCGCC+AGG | + | chr1_1:18371877-18371896 | None:intergenic | 45.0% | |
| TGGCGAGAAAGAATTGATGG+AGG | - | chr1_1:18371876-18371895 | Msa0012220:intron | 45.0% | |
| GGCGAGAAAGAATTGATGGA+GGG | - | chr1_1:18371877-18371896 | Msa0012220:intron | 45.0% | |
| !! | CAGCTTCTTTGGATTTGGTG+AGG | + | chr1_1:18372002-18372021 | None:intergenic | 45.0% |
| !!! | GTTTTGGAGATCATCCACCA+TGG | + | chr1_1:18372073-18372092 | None:intergenic | 45.0% |
| ! | TTTGCCAGGTATCGCAATCT+TGG | - | chr1_1:18372124-18372143 | Msa0012220:intron | 45.0% |
| AAAAGCTCACCCAAACTGTG+AGG | - | chr1_1:18372287-18372306 | Msa0012220:intron | 45.0% | |
| AAAGCTCACCCAAACTGTGA+GGG | - | chr1_1:18372288-18372307 | Msa0012220:intron | 45.0% | |
| !! | TTCTAGCTCCCTCACAGTTT+GGG | + | chr1_1:18372299-18372318 | None:intergenic | 45.0% |
| !! | TGTTTGCTGTTACCTTGGCA+CGG | + | chr1_1:18372517-18372536 | None:intergenic | 45.0% |
| TGCCAAGGTAACAGCAAACA+GGG | - | chr1_1:18372517-18372536 | Msa0012220:intron | 45.0% | |
| !! | TACCCTGTTTGCTGTTACCT+TGG | + | chr1_1:18372522-18372541 | None:intergenic | 45.0% |
| TGAAGAACGACGATTCTTGC+AGG | - | chr1_1:18372607-18372626 | Msa0012220:intron | 45.0% | |
| GTTCATACTTCTTCCCTCTG+CGG | + | chr1_1:18372984-18373003 | None:intergenic | 45.0% | |
| TGATAGGGATGACCTGAGTT+GGG | + | chr1_1:18373098-18373117 | None:intergenic | 45.0% | |
| ATGATAGGGATGACCTGAGT+TGG | + | chr1_1:18373099-18373118 | None:intergenic | 45.0% | |
| ! | AGAAGTAAAACGGTGCTGAG+GGG | - | chr1_1:18373187-18373206 | Msa0012220:CDS | 45.0% |
| CTCTCGAAGAAACCAAAGAG+AGG | - | chr1_1:18373239-18373258 | Msa0012220:CDS | 45.0% | |
| GAGGCGGATGATAATTGGAA+AGG | - | chr1_1:18373262-18373281 | Msa0012220:CDS | 45.0% | |
| TAAGCCAAATGACTTCCCAC+CGG | - | chr1_1:18373297-18373316 | Msa0012220:exon | 45.0% | |
| CAACAACCTCTTTCTGCAAG+AGG | + | chr1_1:18373360-18373379 | None:intergenic | 45.0% | |
| AGAAAGAGGTTGTTGCCTTG+AGG | - | chr1_1:18373365-18373384 | Msa0012220:five_prime_UTR | 45.0% | |
| TTCATGACCAGCTTTCCTCA+AGG | + | chr1_1:18373383-18373402 | None:intergenic | 45.0% | |
| CTGTCAGATGTTAGCAAGGA+AGG | - | chr1_1:18373534-18373553 | Msa0012220:five_prime_UTR | 45.0% | |
| AGATACGTTGACCAAAGCCA+TGG | - | chr1_1:18373558-18373577 | Msa0012220:five_prime_UTR | 45.0% | |
| CTTCTTTGCCTCAACTTCCA+TGG | + | chr1_1:18373578-18373597 | None:intergenic | 45.0% | |
| GGAAGTAGCTTCCATGGAAA+AGG | - | chr1_1:18373606-18373625 | Msa0012220:five_prime_UTR | 45.0% | |
| AGTAGCTTCCATGGAAAAGG+AGG | - | chr1_1:18373609-18373628 | Msa0012220:five_prime_UTR | 45.0% | |
| !! | GGTTCTGAGCACTGTTTACA+GGG | + | chr1_1:18373699-18373718 | None:intergenic | 45.0% |
| !! | TGGTTCTGAGCACTGTTTAC+AGG | + | chr1_1:18373700-18373719 | None:intergenic | 45.0% |
| GCTCAGAACCAGCTAATTTC+TGG | - | chr1_1:18373709-18373728 | Msa0012220:five_prime_UTR | 45.0% | |
| !!! | AATTTTACTTAATTTTTTTT+TGG | - | chr1_1:18368312-18368331 | Msa0012220:CDS | 5.0% |
| !!! | ATTATGTTTTTTTTTTTTTT+TGG | - | chr1_1:18368725-18368744 | Msa0012220:intron | 5.0% |
| !!! | TTATGTTTTTTTTTTTTTTT+GGG | - | chr1_1:18368726-18368745 | Msa0012220:intron | 5.0% |
| !! | AAAATATTAAAAGAAAATAA+GGG | + | chr1_1:18369728-18369747 | None:intergenic | 5.0% |
| !! | TAAAATATTAAAAGAAAATA+AGG | + | chr1_1:18369729-18369748 | None:intergenic | 5.0% |
| !! | TTTATATCAAAAAATAAATA+AGG | + | chr1_1:18372666-18372685 | None:intergenic | 5.0% |
| !!! | TATTAATTGTTTTTTTTTTT+TGG | - | chr1_1:18373456-18373475 | Msa0012220:five_prime_UTR | 5.0% |
| ACGGCGATGGAGGAGATTTA+CGG | - | chr1_1:18368068-18368087 | Msa0012220:CDS | 50.0% | |
| ATGGAGGAGATTTACGGCGA+CGG | - | chr1_1:18368074-18368093 | Msa0012220:CDS | 50.0% | |
| AGAACTTCGTCGAGAAGACG+CGG | - | chr1_1:18368146-18368165 | Msa0012220:CDS | 50.0% | |
| CGGCTTGAGAATGAAGTTCG+AGG | - | chr1_1:18368251-18368270 | Msa0012220:CDS | 50.0% | |
| CGCATGAGTCGGTATTGTGT+TGG | - | chr1_1:18368626-18368645 | Msa0012220:intron | 50.0% | |
| GTGGTTACCCAAGTTCGAAC+CGG | - | chr1_1:18368858-18368877 | Msa0012220:CDS | 50.0% | |
| TGGTTACCCAAGTTCGAACC+GGG | - | chr1_1:18368859-18368878 | Msa0012220:CDS | 50.0% | |
| AGTCAATTATACCGGGACGG+AGG | + | chr1_1:18369489-18369508 | None:intergenic | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | - | chr1_1:18369684-18369703 | Msa0012220:CDS | 50.0% | |
| ! | ATAAAGTACTCCCTCCGTCC+CGG | + | chr1_1:18369701-18369720 | None:intergenic | 50.0% |
| AGCGTAAGAACAGAAGGTGG+TGG | - | chr1_1:18370139-18370158 | Msa0012220:intron | 50.0% | |
| CCTGTGCTGCAAGCCTATTA+TGG | + | chr1_1:18370181-18370200 | None:intergenic | 50.0% | |
| CCATAATAGGCTTGCAGCAC+AGG | - | chr1_1:18370178-18370197 | Msa0012220:intron | 50.0% | |
| AGTCTTAGAGTGCACGGAGA+AGG | - | chr1_1:18370298-18370317 | Msa0012220:intron | 50.0% | |
| !! | CTTGGTTTGGGCATGTGTAG+TGG | - | chr1_1:18370801-18370820 | Msa0012220:intron | 50.0% |
| GCTGTCTGAAGAGCTGTCAA+AGG | - | chr1_1:18371514-18371533 | Msa0012220:intron | 50.0% | |
| AGCAGAAGCTACTCTTCGGA+GGG | - | chr1_1:18371727-18371746 | Msa0012220:intron | 50.0% | |
| CATCATCCTTCTGAGCAGCA+TGG | + | chr1_1:18371754-18371773 | None:intergenic | 50.0% | |
| GCAAGAATTGCTTCGATCGG+AGG | + | chr1_1:18371782-18371801 | None:intergenic | 50.0% | |
| ! | ACTAAAGCTTGCTCGGCAAG+AGG | - | chr1_1:18371817-18371836 | Msa0012220:intron | 50.0% |
| ATTGATGGAGGGACCGAATC+TGG | - | chr1_1:18371888-18371907 | Msa0012220:intron | 50.0% | |
| TGTTCAGTTTGCCTTGGCCA+AGG | - | chr1_1:18372044-18372063 | Msa0012220:intron | 50.0% | |
| TTGGAGATCATCCACCATGG+AGG | + | chr1_1:18372070-18372089 | None:intergenic | 50.0% | |
| TCGTCCAAGATTGCGATACC+TGG | + | chr1_1:18372131-18372150 | None:intergenic | 50.0% | |
| GCATAGACAAAAGGTGGCAG+AGG | - | chr1_1:18372261-18372280 | Msa0012220:intron | 50.0% | |
| !! | CTTCTAGCTCCCTCACAGTT+TGG | + | chr1_1:18372300-18372319 | None:intergenic | 50.0% |
| CTAGAAGAGTCAGTCCTTGC+AGG | - | chr1_1:18372313-18372332 | Msa0012220:intron | 50.0% | |
| GTGCCAAGGTAACAGCAAAC+AGG | - | chr1_1:18372516-18372535 | Msa0012220:intron | 50.0% | |
| AGCAAACAGGGTAGCTGTTG+TGG | - | chr1_1:18372529-18372548 | Msa0012220:intron | 50.0% | |
| TCAATTGCGGCTCAAAGTGC+TGG | - | chr1_1:18372916-18372935 | Msa0012220:intron | 50.0% | |
| !! | AAGTGCTGGAGGAGAGTTTG+AGG | - | chr1_1:18372930-18372949 | Msa0012220:CDS | 50.0% |
| ! | AGTGCTGGAGGAGAGTTTGA+GGG | - | chr1_1:18372931-18372950 | Msa0012220:CDS | 50.0% |
| TCTTCTCGTCGCCAATCACT+AGG | - | chr1_1:18373010-18373029 | Msa0012220:intron | 50.0% | |
| ! | ATAGGGATGACCTGAGTTGG+GGG | + | chr1_1:18373096-18373115 | None:intergenic | 50.0% |
| GATAGGGATGACCTGAGTTG+GGG | + | chr1_1:18373097-18373116 | None:intergenic | 50.0% | |
| CGAAGAAACCAAAGAGAGGG+AGG | - | chr1_1:18373243-18373262 | Msa0012220:CDS | 50.0% | |
| AGAAACCAAAGAGAGGGAGG+CGG | - | chr1_1:18373246-18373265 | Msa0012220:CDS | 50.0% | |
| AGAGGGAGGCGGATGATAAT+TGG | - | chr1_1:18373257-18373276 | Msa0012220:CDS | 50.0% | |
| TATCCTCTGTATCTGCCGGT+GGG | + | chr1_1:18373315-18373334 | None:intergenic | 50.0% | |
| GTTGTTGCCTTGAGGAAAGC+TGG | - | chr1_1:18373373-18373392 | Msa0012220:five_prime_UTR | 50.0% | |
| GACCAAAGCCATGGAAGTTG+AGG | - | chr1_1:18373567-18373586 | Msa0012220:five_prime_UTR | 50.0% | |
| TGCCTCAACTTCCATGGCTT+TGG | + | chr1_1:18373572-18373591 | None:intergenic | 50.0% | |
| GAGAAGGGAAGTAGCTTCCA+TGG | - | chr1_1:18373600-18373619 | Msa0012220:five_prime_UTR | 50.0% | |
| ! | AGCAGCTACCTCCTTTTCCA+TGG | + | chr1_1:18373620-18373639 | None:intergenic | 50.0% |
| TCGTTTCAGATCGACGGCGA+TGG | - | chr1_1:18368055-18368074 | Msa0012220:CDS | 55.0% | |
| TTTCAGATCGACGGCGATGG+AGG | - | chr1_1:18368058-18368077 | Msa0012220:CDS | 55.0% | |
| ! | CGGTTCGGATCCAGTGAAAG+TGG | - | chr1_1:18368220-18368239 | Msa0012220:CDS | 55.0% |
| ! | GGAGATCCCGGTTCGAACTT+GGG | + | chr1_1:18368868-18368887 | None:intergenic | 55.0% |
| CACACACAAAGGGGAGATCC+CGG | + | chr1_1:18368880-18368899 | None:intergenic | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | - | chr1_1:18369688-18369707 | Msa0012220:CDS | 55.0% | |
| CAGCAGAAGCTACTCTTCGG+AGG | - | chr1_1:18371726-18371745 | Msa0012220:intron | 55.0% | |
| ATCATCCACCATGGAGGCCT+TGG | + | chr1_1:18372064-18372083 | None:intergenic | 55.0% | |
| GAAGAGTCAGTCCTTGCAGG+TGG | - | chr1_1:18372316-18372335 | Msa0012220:intron | 55.0% | |
| !! | ATTGCGGCTCAAAGTGCTGG+AGG | - | chr1_1:18372919-18372938 | Msa0012220:intron | 55.0% |
| GTGCTGGAGGAGAGTTTGAG+GGG | - | chr1_1:18372932-18372951 | Msa0012220:CDS | 55.0% | |
| TCTCGTCGCCAATCACTAGG+TGG | - | chr1_1:18373013-18373032 | Msa0012220:intron | 55.0% | |
| TGGGGGGATGGTGTTCTCTT+AGG | + | chr1_1:18373079-18373098 | None:intergenic | 55.0% | |
| ! | TAGGGATGACCTGAGTTGGG+GGG | + | chr1_1:18373095-18373114 | None:intergenic | 55.0% |
| !! | TGATGGTGGCTCAAGGACAC+TGG | - | chr1_1:18373162-18373181 | Msa0012220:CDS | 55.0% |
| ATCATCCGCCTCCCTCTCTT+TGG | + | chr1_1:18373254-18373273 | None:intergenic | 55.0% | |
| TCTGCCGGTGGGAAGTCATT+TGG | + | chr1_1:18373304-18373323 | None:intergenic | 55.0% | |
| CTATCCTCTGTATCTGCCGG+TGG | + | chr1_1:18373316-18373335 | None:intergenic | 55.0% | |
| GAGGAGATTTACGGCGACGG+AGG | - | chr1_1:18368077-18368096 | Msa0012220:CDS | 60.0% | |
| GATTTACGGCGACGGAGGAG+CGG | - | chr1_1:18368082-18368101 | Msa0012220:CDS | 60.0% | |
| ! | GGGAGATCCCGGTTCGAACT+TGG | + | chr1_1:18368869-18368888 | None:intergenic | 60.0% |
| GTGAGGGAGGGGTGATGCAT+AGG | - | chr1_1:18369115-18369134 | Msa0012220:CDS | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | - | chr1_1:18369687-18369706 | Msa0012220:CDS | 60.0% | |
| GAGGGTCCATGCTGCTCAGA+AGG | - | chr1_1:18371745-18371764 | Msa0012220:intron | 60.0% | |
| TTGCTGCTGCACCACCTGCA+AGG | + | chr1_1:18372330-18372349 | None:intergenic | 60.0% | |
| TAGAGAGTTGGGCCGTGCCA+AGG | - | chr1_1:18372502-18372521 | Msa0012220:intron | 60.0% | |
| AGTAGTCGCAGCACCGCAGA+GGG | - | chr1_1:18372968-18372987 | Msa0012220:CDS | 60.0% | |
| GAACACCATCCCCCCAACTC+AGG | - | chr1_1:18373083-18373102 | Msa0012220:intron | 60.0% | |
| ! | GATGACCTGAGTTGGGGGGA+TGG | + | chr1_1:18373091-18373110 | None:intergenic | 60.0% |
| CTTCCCACCGGCAGATACAG+AGG | - | chr1_1:18373309-18373328 | Msa0012220:exon | 60.0% | |
| ! | GCGACGCCGGCACCATTTTC+TGG | - | chr1_1:18368107-18368126 | Msa0012220:CDS | 65.0% |
| TGCCTTGGCCAAGGCCTCCA+TGG | - | chr1_1:18372053-18372072 | Msa0012220:intron | 65.0% | |
| CACCATGGAGGCCTTGGCCA+AGG | + | chr1_1:18372058-18372077 | None:intergenic | 65.0% | |
| CTTGGCCAAGGCCTCCATGG+TGG | - | chr1_1:18372056-18372075 | Msa0012220:intron | 65.0% | |
| CAGTAGTCGCAGCACCGCAG+AGG | - | chr1_1:18372967-18372986 | Msa0012220:CDS | 65.0% | |
| TTACGGCGACGGAGGAGCGG+TGG | - | chr1_1:18368085-18368104 | Msa0012220:CDS | 70.0% | |
| ! | CGGAGGAGCGGTGGCGACGC+CGG | - | chr1_1:18368094-18368113 | Msa0012220:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 18367640 | 18373744 | 18367640 | ID=Msa0012220;Name=Msa0012220 |
| chr1_1 | mRNA | 18367640 | 18373744 | 18367640 | ID=Msa0012220-mRNA-1;Parent=Msa0012220;Name=Msa0012220-mRNA-1;_AED=0.13;_eAED=0.13;_QI=434|1|1|1|1|1|10|6|599 |
| chr1_1 | exon | 18367640 | 18367843 | 18367640 | ID=Msa0012220-mRNA-1:exon:6743;Parent=Msa0012220-mRNA-1 |
| chr1_1 | exon | 18367943 | 18368476 | 18367943 | ID=Msa0012220-mRNA-1:exon:6742;Parent=Msa0012220-mRNA-1 |
| chr1_1 | exon | 18368563 | 18368634 | 18368563 | ID=Msa0012220-mRNA-1:exon:6741;Parent=Msa0012220-mRNA-1 |
| chr1_1 | exon | 18368756 | 18368902 | 18368756 | ID=Msa0012220-mRNA-1:exon:6740;Parent=Msa0012220-mRNA-1 |
| chr1_1 | exon | 18368994 | 18369149 | 18368994 | ID=Msa0012220-mRNA-1:exon:6739;Parent=Msa0012220-mRNA-1 |
| chr1_1 | exon | 18369253 | 18369423 | 18369253 | ID=Msa0012220-mRNA-1:exon:6738;Parent=Msa0012220-mRNA-1 |
| chr1_1 | exon | 18369546 | 18369716 | 18369546 | ID=Msa0012220-mRNA-1:exon:6737;Parent=Msa0012220-mRNA-1 |
| chr1_1 | exon | 18369804 | 18369869 | 18369804 | ID=Msa0012220-mRNA-1:exon:6736;Parent=Msa0012220-mRNA-1 |
| chr1_1 | exon | 18372929 | 18373014 | 18372929 | ID=Msa0012220-mRNA-1:exon:6735;Parent=Msa0012220-mRNA-1 |
| chr1_1 | exon | 18373112 | 18373744 | 18373112 | ID=Msa0012220-mRNA-1:exon:6734;Parent=Msa0012220-mRNA-1 |
| chr1_1 | five_prime_UTR | 18373311 | 18373744 | 18373311 | ID=Msa0012220-mRNA-1:five_prime_utr;Parent=Msa0012220-mRNA-1 |
| chr1_1 | CDS | 18373112 | 18373310 | 18373112 | ID=Msa0012220-mRNA-1:cds;Parent=Msa0012220-mRNA-1 |
| chr1_1 | CDS | 18372929 | 18373014 | 18372929 | ID=Msa0012220-mRNA-1:cds;Parent=Msa0012220-mRNA-1 |
| chr1_1 | CDS | 18369804 | 18369869 | 18369804 | ID=Msa0012220-mRNA-1:cds;Parent=Msa0012220-mRNA-1 |
| chr1_1 | CDS | 18369546 | 18369716 | 18369546 | ID=Msa0012220-mRNA-1:cds;Parent=Msa0012220-mRNA-1 |
| chr1_1 | CDS | 18369253 | 18369423 | 18369253 | ID=Msa0012220-mRNA-1:cds;Parent=Msa0012220-mRNA-1 |
| chr1_1 | CDS | 18368994 | 18369149 | 18368994 | ID=Msa0012220-mRNA-1:cds;Parent=Msa0012220-mRNA-1 |
| chr1_1 | CDS | 18368756 | 18368902 | 18368756 | ID=Msa0012220-mRNA-1:cds;Parent=Msa0012220-mRNA-1 |
| chr1_1 | CDS | 18368563 | 18368634 | 18368563 | ID=Msa0012220-mRNA-1:cds;Parent=Msa0012220-mRNA-1 |
| chr1_1 | CDS | 18367943 | 18368476 | 18367943 | ID=Msa0012220-mRNA-1:cds;Parent=Msa0012220-mRNA-1 |
| chr1_1 | CDS | 18367646 | 18367843 | 18367646 | ID=Msa0012220-mRNA-1:cds;Parent=Msa0012220-mRNA-1 |
| chr1_1 | three_prime_UTR | 18367640 | 18367645 | 18367640 | ID=Msa0012220-mRNA-1:three_prime_utr;Parent=Msa0012220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
