AlfalfaGEDB | Msa1097920

M. sativa cultivar zhongmu-4 / Msa1097920

KEGG: K10908
GO: GO:0000428 GO:0000959 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006351 GO:0006390 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034062 GO:0034245 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0061695 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0098798 GO:0140053 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234
PFAM: PF14700.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1097920	XP_039683301.1	94.228	641	37	0	1	641	1	641	0.0	1197
Msa1097920	XP_039683301.1	98.000	300	6	0	642	941	781	1080	0.0	619

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1097920	sp\|Q8VWF8\|RPOT2_NICSY	52.508	638	185	14	34	641	32	581	0.0	602
Msa1097920	sp\|Q8VWF8\|RPOT2_NICSY	85.667	300	43	0	642	941	721	1020	0.0	554

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1097920	A0A396H096	94.228	641	37	0	1	641	1	641	0.0	1197
Msa1097920	A0A396H096	98.000	300	6	0	642	941	781	1080	0.0	619

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0011960	Msa1097920	0.846910	1.613493e-59	-8.615850e-47
Msa0027260	Msa1097920	0.808408	3.143666e-50	-8.615850e-47
Msa0027770	Msa1097920	0.821986	3.015368e-53	-8.615850e-47
Msa0032580	Msa1097920	0.812204	4.769718e-51	-8.615850e-47
Msa0033950	Msa1097920	0.806680	7.312781e-50	-8.615850e-47
Msa0034030	Msa1097920	0.800828	1.200113e-48	-8.615850e-47
Msa0037700	Msa1097920	0.826676	2.381007e-54	-8.615850e-47
Msa0043660	Msa1097920	0.813648	2.301122e-51	-8.615850e-47
Msa0054440	Msa1097920	0.809892	1.511499e-50	-8.615850e-47
Msa0054480	Msa1097920	0.810458	1.141219e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1097920	MtrunA17_Chr7g0220451	94.228	641	37	0	1	641	1	641	0.0	1197
Msa1097920	MtrunA17_Chr7g0220451	98.000	300	6	0	642	941	781	1080	0.0	619
Msa1097920	MtrunA17_Chr8g0366031	83.333	300	50	0	642	941	692	991	5.25e-176	537
Msa1097920	MtrunA17_Chr8g0366031	56.616	461	177	5	198	641	97	551	4.90e-162	501

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1097920	AT5G15700.1	61.594	414	150	3	228	641	168	572	4.36e-173	530
Msa1097920	AT5G15700.1	78.667	300	64	0	642	941	712	1011	1.22e-165	511
Msa1097920	AT5G15700.2	61.594	414	150	3	228	641	168	572	1.06e-172	530
Msa1097920	AT5G15700.2	77.104	297	67	1	642	937	712	1008	1.45e-158	493
Msa1097920	AT1G68990.1	78.333	300	65	0	642	941	677	976	2.18e-165	509
Msa1097920	AT1G68990.1	54.825	456	187	6	198	640	87	536	3.99e-165	508
Msa1097920	AT1G68990.2	78.333	300	65	0	642	941	684	983	2.52e-165	509
Msa1097920	AT1G68990.2	53.996	463	187	7	198	640	87	543	2.37e-162	501
Msa1097920	AT2G24120.1	76.333	300	71	0	642	941	694	993	6.02e-158	490
Msa1097920	AT2G24120.1	53.269	413	173	6	233	641	158	554	1.05e-142	450

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Find 226 sgRNAs with CRISPR-Local

Find 1054 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGAGGGTAAATAACA+AGG	0.673818	7_3:+24169854	Msa1097920:CDS
AAATCTAAGTCTCCACGTTC+AGG	0.450684	7_3:-24177548	None:intergenic
AACAAAATTTGGCGGAAATG+CGG	0.541188	7_3:-24176490	None:intergenic
AACCTTACCGCTATCAAGGA+AGG	0.605842	7_3:+24175833	Msa1097920:CDS
AACTTTGGCAAGAAGCTGCA+AGG	0.509657	7_3:+24164369	Msa1097920:CDS
AAGAGAGGAAGCAGAATGCT+GGG	0.500594	7_3:+24164276	Msa1097920:CDS
AAGCCAGCTGATGTTTACTC+GGG	0.619354	7_3:+24172605	Msa1097920:CDS
AAGCCGCTTGGTTGAACTTT+TGG	0.249283	7_3:+24165713	Msa1097920:CDS
AAGGATTCGTTGGCACTGCT+AGG	0.525342	7_3:+24164636	Msa1097920:CDS
AAGGGTGGAAATTCCAAAGA+TGG	0.506458	7_3:-24177524	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGTTGTGGATAAGAGAATT+GGG	-	chr7_3:24163672-24163691	None:intergenic	30.0%
TGAAATTAAAGAGTTGTTGG+AGG	+	chr7_3:24164115-24164134	Msa1097920:CDS	30.0%
TCATTAATTTCGTCATCAAC+CGG	-	chr7_3:24164233-24164252	None:intergenic	30.0%
CGAAATTAATGAGTTGTTGA+AGG	+	chr7_3:24164241-24164260	Msa1097920:CDS	30.0%
AGAAACAATGACTTCATGTA+AGG	-	chr7_3:24164449-24164468	None:intergenic	30.0%
AGCAAGAGATGTATCAAAAT+GGG	+	chr7_3:24164507-24164526	Msa1097920:CDS	30.0%
AGTAATTACAGCCATCTTAT+CGG	-	chr7_3:24164576-24164595	None:intergenic	30.0%
TTAAAAATGTGTTTGGAGGT+AGG	+	chr7_3:24164956-24164975	Msa1097920:intron	30.0%
ACTGTTCACATCAGAATAAA+TGG	-	chr7_3:24165281-24165300	None:intergenic	30.0%
TGTGAACAGTAAACTTTCAA+AGG	+	chr7_3:24165291-24165310	Msa1097920:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	24163567	24178118	24163567	ID=Msa1097920;Name=Msa1097920
chr7_3	mRNA	24163567	24178118	24163567	ID=Msa1097920-mRNA-1;Parent=Msa1097920;Name=Msa1097920-mRNA-1;_AED=0.09;_eAED=0.09;_QI=63\|0.94\|1\|1\|1\|1\|18\|511\|941
chr7_3	exon	24163567	24164703	24163567	ID=Msa1097920-mRNA-1:exon:5205;Parent=Msa1097920-mRNA-1
chr7_3	exon	24165403	24165618	24165403	ID=Msa1097920-mRNA-1:exon:5206;Parent=Msa1097920-mRNA-1
chr7_3	exon	24165708	24165850	24165708	ID=Msa1097920-mRNA-1:exon:5207;Parent=Msa1097920-mRNA-1
chr7_3	exon	24165947	24166013	24165947	ID=Msa1097920-mRNA-1:exon:5208;Parent=Msa1097920-mRNA-1
chr7_3	exon	24168130	24168188	24168130	ID=Msa1097920-mRNA-1:exon:5209;Parent=Msa1097920-mRNA-1
chr7_3	exon	24169589	24169706	24169589	ID=Msa1097920-mRNA-1:exon:5210;Parent=Msa1097920-mRNA-1
chr7_3	exon	24169831	24169944	24169831	ID=Msa1097920-mRNA-1:exon:5211;Parent=Msa1097920-mRNA-1
chr7_3	exon	24170133	24170264	24170133	ID=Msa1097920-mRNA-1:exon:5212;Parent=Msa1097920-mRNA-1
chr7_3	exon	24171305	24171355	24171305	ID=Msa1097920-mRNA-1:exon:5213;Parent=Msa1097920-mRNA-1
chr7_3	exon	24172569	24172639	24172569	ID=Msa1097920-mRNA-1:exon:5214;Parent=Msa1097920-mRNA-1
chr7_3	exon	24175001	24175085	24175001	ID=Msa1097920-mRNA-1:exon:5215;Parent=Msa1097920-mRNA-1
chr7_3	exon	24175297	24175449	24175297	ID=Msa1097920-mRNA-1:exon:5216;Parent=Msa1097920-mRNA-1
chr7_3	exon	24175536	24175610	24175536	ID=Msa1097920-mRNA-1:exon:5217;Parent=Msa1097920-mRNA-1
chr7_3	exon	24175772	24175861	24175772	ID=Msa1097920-mRNA-1:exon:5218;Parent=Msa1097920-mRNA-1
chr7_3	exon	24175971	24176018	24175971	ID=Msa1097920-mRNA-1:exon:5219;Parent=Msa1097920-mRNA-1
chr7_3	exon	24176468	24176582	24176468	ID=Msa1097920-mRNA-1:exon:5220;Parent=Msa1097920-mRNA-1
chr7_3	exon	24176828	24176931	24176828	ID=Msa1097920-mRNA-1:exon:5221;Parent=Msa1097920-mRNA-1
chr7_3	exon	24177497	24178118	24177497	ID=Msa1097920-mRNA-1:exon:5222;Parent=Msa1097920-mRNA-1
chr7_3	five_prime_UTR	24163567	24163629	24163567	ID=Msa1097920-mRNA-1:five_prime_utr;Parent=Msa1097920-mRNA-1
chr7_3	CDS	24163630	24164703	24163630	ID=Msa1097920-mRNA-1:cds;Parent=Msa1097920-mRNA-1
chr7_3	CDS	24165403	24165618	24165403	ID=Msa1097920-mRNA-1:cds;Parent=Msa1097920-mRNA-1
chr7_3	CDS	24165708	24165850	24165708	ID=Msa1097920-mRNA-1:cds;Parent=Msa1097920-mRNA-1
chr7_3	CDS	24165947	24166013	24165947	ID=Msa1097920-mRNA-1:cds;Parent=Msa1097920-mRNA-1
chr7_3	CDS	24168130	24168188	24168130	ID=Msa1097920-mRNA-1:cds;Parent=Msa1097920-mRNA-1
chr7_3	CDS	24169589	24169706	24169589	ID=Msa1097920-mRNA-1:cds;Parent=Msa1097920-mRNA-1
chr7_3	CDS	24169831	24169944	24169831	ID=Msa1097920-mRNA-1:cds;Parent=Msa1097920-mRNA-1
chr7_3	CDS	24170133	24170264	24170133	ID=Msa1097920-mRNA-1:cds;Parent=Msa1097920-mRNA-1
chr7_3	CDS	24171305	24171355	24171305	ID=Msa1097920-mRNA-1:cds;Parent=Msa1097920-mRNA-1
chr7_3	CDS	24172569	24172639	24172569	ID=Msa1097920-mRNA-1:cds;Parent=Msa1097920-mRNA-1
chr7_3	CDS	24175001	24175085	24175001	ID=Msa1097920-mRNA-1:cds;Parent=Msa1097920-mRNA-1
chr7_3	CDS	24175297	24175449	24175297	ID=Msa1097920-mRNA-1:cds;Parent=Msa1097920-mRNA-1
chr7_3	CDS	24175536	24175610	24175536	ID=Msa1097920-mRNA-1:cds;Parent=Msa1097920-mRNA-1
chr7_3	CDS	24175772	24175861	24175772	ID=Msa1097920-mRNA-1:cds;Parent=Msa1097920-mRNA-1
chr7_3	CDS	24175971	24176018	24175971	ID=Msa1097920-mRNA-1:cds;Parent=Msa1097920-mRNA-1
chr7_3	CDS	24176468	24176582	24176468	ID=Msa1097920-mRNA-1:cds;Parent=Msa1097920-mRNA-1
chr7_3	CDS	24176828	24176931	24176828	ID=Msa1097920-mRNA-1:cds;Parent=Msa1097920-mRNA-1
chr7_3	CDS	24177497	24177607	24177497	ID=Msa1097920-mRNA-1:cds;Parent=Msa1097920-mRNA-1
chr7_3	three_prime_UTR	24177608	24178118	24177608	ID=Msa1097920-mRNA-1:three_prime_utr;Parent=Msa1097920-mRNA-1

Gene Sequence

>Msa1097920

ATGGTTAATTTAATGTTCACTACAACACTTGAATCCTTACCCAATTCTCTTATCCACAACAAAAATTTCATATTTTTGAAAAAATCTCATTTGGGCATTTCATCAAACATGTGGCGGAATGTTTCCAAACAAGTCTGTAAAGGTTTGTTACGTCGGAATGTTAACTACCCACCTCTTGTTTTCTCTCAAAATTCCATTTTTTCTGGTAATAAAGAGATTTTGTGTAACTTTGGGAAGGAAAATGGAAGTGGGCGTGTGAATAAATCGAGGTTTCAGTTAGTTGAGAATTTTGGTGGGTGTTGTTGTTCGCAATTTGATGCAAAGGGTTATTCTAGTGTTGCTGAGGCTGTTTCTTCTACTGATGTTGAGGATGAGAGGAATTTTCATAATTCGGGTTTTCGATTTGATGGTGAAAGATATTCTAGTGTTGCTGAGACGCTTTCTTCGACTGATGCAGAGGAAGATGATCTTGCTGTGATTGATGATGAAATTAAAGAGTTGTTGGAGGAGATGGAGAGAGAAGATAAGAGGAAGATTGATGAATTTATGTTAAAAAACAAGGGGATTTTGCATAACGATGCGGAAAAAGCTGATTCTGCCCCGGTTGATGACGAAATTAATGAGTTGTTGAAGGAGATGAAGAGAGAAGAGAGGAAGCAGAATGCTGGGTTCAAGTGGCATGGTTTGGCAGAGGGGAAATATAAGGAGTTGAGGAAAAGACAAGTGAAGATTGAGACTGAACTTTGGCAAGAAGCTGCAAGGGAATATAAAGAGCTTTTGATGGATATGTGTGAACAGAAGTTGGCACCCAATTTGCCTTACATGAAGTCATTGTTTCTTGGTTGGTTTGAGCCTCTAAGGGATGCAATTGAGAACGAGCAAGAGATGTATCAAAATGGGAAGAAGAGGACAGCTTATGCGCCTTACTTTCTTCAGTTGCCATCCGATAAGATGGCTGTAATTACTATGCATAAGATGATGGCGTTGTTGATGGCGGGAAGTGAGAAAGGATTCGTTGGCACTGCTAGGGTTGTACAGGCCGTGTGCAGTGTAGGTGATTCCATTGAGCAAGAGGTTAGAATACACAAATTCTTGGAGAAGAGTGCTAAGAAAAAACATGATAAAGGCAAGAAAAATGAAGTAGTTGAGTCCACTGAAGTCATAAAGGAAGAAGAGAAACTGCGTAAAAAGGTCATTGATTTGATGAAAAAGCAGAAGCTTGCTGCAGTGAGAGGAATATTGAAGGGCCTTGATGATACAAAACCGTGGGGACCAGTTATGAAGACAAAGGTAGGAAGCCGCTTGGTTGAACTTTTGGTTCAAACGGCATATATTCAACCGCCAGCAGAATCAGAATCAGATCAGTCACAAGATGGTGGACCTGATATCCGTCCTGCATTTGTGCATTCATTTAGAACGATGAAAGAGGCAGCGAAAACAGGCAGAAAATACGGTGTTATTGAATGTGACCCTCTAATTCTTAAAGGGCTTGACCGAACTGCAAAAAGTATGGTCATTCCTTATATGCCTATGGTTGTTCCACCGGTCAACTGGTCAGGTTTTGATAAAGGTGGATACTTGTTCTTACCCTCCTATGTCATGCGTACTCATGGAGTCAAGCAACAACGAGAGGCTGTTAAGAAAGCCCCTAGAAAGCAATTAGAGCCTGTATTTGAGGCTCTGGATACTCTCGGGAATACAAAATGGAGGGTAAATAACAAGGTGCTCAGTGTTGTGGATAGGATATGGGCTGGTGGAGGCCGACTTGCTGGTTTGGTGGACCGCAATGATGTTGAAATTCCTGAGGAGCTAGAAACTGACGATGAAGCAGAGAAAAGGAAGTGGAAATGGAAGATCAAATCTGTGAAGAAAGAGAATAGGGAGAGATATTCACTACGTTGTGACACAGAACTTAAACTTGCTGATGGCTCTTGCAATGGCTTACAACATTATGCTGCTTTAGGAAGAGACAAGTTAGGGGCTGCTGCTGTCAATCTAGTTGCAGGAGAGAAGCCAGCTGATGTTTACTCGGGTATAGCAGCTAGGGTATTAGAAATCATGAAAATCGATGCTCAGAAAGATCCGGAAATTTTTCCTGAAGCTCGTCATGCAAAGATTTTGGTTAATCAGGTGGATAGAAAATTGGTTAAGCAGACGGTGATGACATCAGTTTACGGTGTCACATACATTGGAGCACGGGAACAGATAAAGAGAAGGTTGAAAGAAAGAGATGCTATTACAGATGATTCAGAGCTCTTTGGTGCTGCTTGTTATGCTGCAAAGGTGACCTTAACCGCCTTACAGGAGATGTTTGAAGGTGCACGAAGTATCATGAACTGGCTTGGTGACTGTGCAAAAGTGATTGCATCTGAAAATGAACCAGTGTGTTGGACCACTCCTCTTGGACTTCCTGTGGTGCAACCTTACCGCTATCAAGGAAGGCATATTGTCAAAACTTCACTTCAGATGTTAACATTGAAACGAGAAACCGACAAGGTCATGGTCAAGCGGCAGAGAACCGCATTTCCGCCAAATTTTGTTCACTCACTTGATGGTTCTCATATGATGATGACTGCGATTGCCTGCAAAAAGGCAGGCTTGAGTTTTGCAGGGGTCCATGATTCATATTGGACGCACGCATGTGATGTTGATAATATGAACAGAATACTGAGAGAGAAGTTTGTAGAACTCTATGAGACTCCAATTCTTGAAAACCTATTGGAGAGCTTTCAAGAGTCGTTCCCATCTTTGGAATTTCCACCCTTACCTGAACGTGGAGACTTAGATTTGAAGGAAGTTTTAGAGTCACCATATTTCTTCAACTGA

Protein sequence

>Msa1097920

MVNLMFTTTLESLPNSLIHNKNFIFLKKSHLGISSNMWRNVSKQVCKGLLRRNVNYPPLVFSQNSIFSGNKEILCNFGKENGSGRVNKSRFQLVENFGGCCCSQFDAKGYSSVAEAVSSTDVEDERNFHNSGFRFDGERYSSVAETLSSTDAEEDDLAVIDDEIKELLEEMEREDKRKIDEFMLKNKGILHNDAEKADSAPVDDEINELLKEMKREERKQNAGFKWHGLAEGKYKELRKRQVKIETELWQEAAREYKELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIENEQEMYQNGKKRTAYAPYFLQLPSDKMAVITMHKMMALLMAGSEKGFVGTARVVQAVCSVGDSIEQEVRIHKFLEKSAKKKHDKGKKNEVVESTEVIKEEEKLRKKVIDLMKKQKLAAVRGILKGLDDTKPWGPVMKTKVGSRLVELLVQTAYIQPPAESESDQSQDGGPDIRPAFVHSFRTMKEAAKTGRKYGVIECDPLILKGLDRTAKSMVIPYMPMVVPPVNWSGFDKGGYLFLPSYVMRTHGVKQQREAVKKAPRKQLEPVFEALDTLGNTKWRVNNKVLSVVDRIWAGGGRLAGLVDRNDVEIPEELETDDEAEKRKWKWKIKSVKKENRERYSLRCDTELKLADGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLEIMKIDAQKDPEIFPEARHAKILVNQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLKERDAITDDSELFGAACYAAKVTLTALQEMFEGARSIMNWLGDCAKVIASENEPVCWTTPLGLPVVQPYRYQGRHIVKTSLQMLTLKRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGLSFAGVHDSYWTHACDVDNMNRILREKFVELYETPILENLLESFQESFPSLEFPPLPERGDLDLKEVLESPYFFN*