Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145470 | XP_024636626.1 | 95.636 | 275 | 9 | 1 | 1 | 275 | 1 | 272 | 0.0 | 540 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145470 | sp|Q8RYD1|REM16_ARATH | 56.452 | 124 | 52 | 2 | 8 | 130 | 11 | 133 | 2.64e-42 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145470 | A0A396JGK5 | 95.636 | 275 | 9 | 1 | 1 | 275 | 1 | 272 | 0.0 | 540 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0145470 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002380 | Msa0145470 | 0.848730 | 5.087735e-60 | -8.615850e-47 |
| Msa0051170 | Msa0145470 | 0.862099 | 6.440150e-64 | -8.615850e-47 |
| Msa0051270 | Msa0145470 | 0.869756 | 2.438470e-66 | -8.615850e-47 |
| Msa0145470 | Msa0580710 | 0.828084 | 1.094407e-54 | -8.615850e-47 |
| Msa0145470 | Msa0900630 | 0.816603 | 5.079437e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145470 | MtrunA17_Chr1g0154241 | 95.636 | 275 | 9 | 1 | 1 | 275 | 1 | 272 | 0.0 | 540 |
| Msa0145470 | MtrunA17_Chr1g0154211 | 64.794 | 267 | 85 | 3 | 5 | 268 | 6 | 266 | 3.51e-118 | 344 |
| Msa0145470 | MtrunA17_Chr1g0154101 | 62.626 | 297 | 63 | 5 | 6 | 256 | 168 | 462 | 4.08e-114 | 347 |
| Msa0145470 | MtrunA17_Chr1g0154101 | 76.101 | 159 | 37 | 1 | 2 | 159 | 5 | 163 | 1.68e-81 | 261 |
| Msa0145470 | MtrunA17_Chr1g0154251 | 64.368 | 261 | 79 | 5 | 2 | 249 | 7 | 266 | 3.29e-110 | 327 |
| Msa0145470 | MtrunA17_Chr1g0154111 | 60.741 | 270 | 76 | 5 | 5 | 272 | 9 | 250 | 2.79e-101 | 307 |
| Msa0145470 | MtrunA17_Chr1g0154111 | 56.710 | 231 | 65 | 8 | 36 | 257 | 368 | 572 | 2.83e-68 | 222 |
| Msa0145470 | MtrunA17_Chr1g0154191 | 61.686 | 261 | 56 | 6 | 1 | 256 | 1 | 222 | 5.76e-98 | 291 |
| Msa0145470 | MtrunA17_Chr1g0154171 | 59.922 | 257 | 62 | 5 | 5 | 258 | 6 | 224 | 6.16e-90 | 271 |
| Msa0145470 | MtrunA17_Chr1g0154131 | 54.753 | 263 | 55 | 6 | 2 | 263 | 164 | 363 | 6.06e-82 | 254 |
| Msa0145470 | MtrunA17_Chr1g0154131 | 74.684 | 158 | 40 | 0 | 3 | 160 | 7 | 164 | 7.94e-81 | 251 |
| Msa0145470 | MtrunA17_Chr1g0154161 | 75.000 | 152 | 35 | 2 | 5 | 155 | 13 | 162 | 1.13e-74 | 231 |
| Msa0145470 | MtrunA17_Chr1g0154151 | 55.085 | 236 | 56 | 6 | 36 | 268 | 19 | 207 | 8.89e-73 | 226 |
| Msa0145470 | MtrunA17_Chr1g0154071 | 74.046 | 131 | 34 | 0 | 6 | 136 | 12 | 142 | 2.59e-65 | 211 |
| Msa0145470 | MtrunA17_Chr1g0154071 | 66.667 | 147 | 48 | 1 | 10 | 156 | 145 | 290 | 2.75e-62 | 204 |
| Msa0145470 | MtrunA17_Chr1g0154041 | 36.275 | 102 | 64 | 1 | 21 | 122 | 15 | 115 | 3.25e-16 | 78.2 |
| Msa0145470 | MtrunA17_Chr3g0131891 | 34.021 | 97 | 63 | 1 | 20 | 115 | 17 | 113 | 1.19e-13 | 70.1 |
| Msa0145470 | MtrunA17_Chr7g0233561 | 35.106 | 94 | 61 | 0 | 22 | 115 | 19 | 112 | 3.17e-13 | 68.6 |
| Msa0145470 | MtrunA17_Chr7g0233571 | 34.375 | 96 | 62 | 1 | 21 | 115 | 9 | 104 | 1.08e-12 | 65.9 |
| Msa0145470 | MtrunA17_Chr7g0233531 | 37.975 | 79 | 49 | 0 | 37 | 115 | 2 | 80 | 7.86e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145470 | AT4G33280.2 | 56.452 | 124 | 52 | 2 | 8 | 130 | 11 | 133 | 9.71e-44 | 150 |
| Msa0145470 | AT4G33280.1 | 56.452 | 124 | 52 | 2 | 8 | 130 | 11 | 133 | 2.68e-43 | 150 |
| Msa0145470 | AT4G33280.3 | 56.452 | 124 | 52 | 2 | 8 | 130 | 11 | 133 | 6.99e-43 | 151 |
| Msa0145470 | AT4G34400.2 | 37.113 | 97 | 60 | 1 | 22 | 118 | 17 | 112 | 2.10e-17 | 81.6 |
| Msa0145470 | AT4G34400.1 | 37.113 | 97 | 60 | 1 | 22 | 118 | 17 | 112 | 2.10e-17 | 81.6 |
| Msa0145470 | AT3G18990.1 | 34.951 | 103 | 58 | 1 | 32 | 125 | 17 | 119 | 1.09e-13 | 70.5 |
| Msa0145470 | AT3G18990.2 | 34.951 | 103 | 58 | 1 | 32 | 125 | 17 | 119 | 1.18e-13 | 70.5 |
| Msa0145470 | AT3G06220.1 | 32.584 | 89 | 59 | 1 | 22 | 110 | 11 | 98 | 1.65e-13 | 67.4 |
| Msa0145470 | AT3G06160.1 | 34.831 | 89 | 57 | 1 | 22 | 110 | 26 | 113 | 5.69e-13 | 68.6 |
| Msa0145470 | AT3G06160.5 | 34.831 | 89 | 57 | 1 | 22 | 110 | 11 | 98 | 8.10e-13 | 67.8 |
| Msa0145470 | AT3G06160.4 | 34.831 | 89 | 57 | 1 | 22 | 110 | 11 | 98 | 8.10e-13 | 67.8 |
| Msa0145470 | AT3G06160.3 | 34.831 | 89 | 57 | 1 | 22 | 110 | 11 | 98 | 8.10e-13 | 67.8 |
| Msa0145470 | AT3G06160.2 | 34.831 | 89 | 57 | 1 | 22 | 110 | 70 | 157 | 9.89e-13 | 67.8 |
| Msa0145470 | AT5G66980.1 | 41.463 | 82 | 44 | 1 | 33 | 110 | 21 | 102 | 1.60e-12 | 67.0 |
| Msa0145470 | AT5G60130.5 | 38.202 | 89 | 50 | 2 | 35 | 118 | 27 | 115 | 6.88e-12 | 64.3 |
| Msa0145470 | AT5G60130.3 | 38.202 | 89 | 50 | 2 | 35 | 118 | 1 | 89 | 1.35e-11 | 63.9 |
| Msa0145470 | AT5G60130.4 | 38.202 | 89 | 50 | 2 | 35 | 118 | 24 | 112 | 1.88e-11 | 63.9 |
| Msa0145470 | AT5G60130.1 | 38.202 | 89 | 50 | 2 | 35 | 118 | 27 | 115 | 2.00e-11 | 63.9 |
| Msa0145470 | AT5G60130.2 | 38.202 | 89 | 50 | 2 | 35 | 118 | 27 | 115 | 2.22e-11 | 63.5 |
Find 80 sgRNAs with CRISPR-Local
Find 275 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTCCACTAGGACCTTTA+AGG | 0.183323 | 1_4:-5153315 | None:intergenic |
| CCTGAAAATGTGAACCTTAA+AGG | 0.211774 | 1_4:+5153301 | Msa0145470:CDS |
| TGAAATGGATGAACTGAAAA+TGG | 0.224125 | 1_4:-5152535 | None:intergenic |
| TTTGTCTCTCTGTTTCAAAA+TGG | 0.253518 | 1_4:+5152472 | Msa0145470:exon |
| GCTGGTCTTCCCCGCTTCTT+AGG | 0.270434 | 1_4:-5153835 | None:intergenic |
| AGTGGAGTTGTGTGGAATAT+AGG | 0.300231 | 1_4:+5153328 | Msa0145470:CDS |
| AGGAGTTTGGCACCATTTCT+AGG | 0.300433 | 1_4:-5156294 | None:intergenic |
| CATAAACTATTTGAGGAGTT+TGG | 0.301303 | 1_4:-5156307 | None:intergenic |
| AACAATATATTGCCTAGTTA+AGG | 0.302218 | 1_4:+5156350 | Msa0145470:three_prime_UTR |
| CATGGGAGGAAGACATTTAC+TGG | 0.340818 | 1_4:+5152510 | Msa0145470:CDS |
| AACTTCGTTAACAGGCTTCT+TGG | 0.341598 | 1_4:-5153800 | None:intergenic |
| CCAGGCGTAACTTCGTTAAC+AGG | 0.352395 | 1_4:-5153808 | None:intergenic |
| GTCTTCCCCGCTTCTTAGGC+TGG | 0.353235 | 1_4:-5153831 | None:intergenic |
| TTATGTTCCTTCAGAATAGA+AGG | 0.360823 | 1_4:+5156116 | Msa0145470:three_prime_UTR |
| AATGCGGTTCTGAGAAATTT+CGG | 0.363117 | 1_4:+5153626 | Msa0145470:CDS |
| CCCCGCTTCTTAGGCTGGCC+AGG | 0.381562 | 1_4:-5153826 | None:intergenic |
| CCAGCAAAATCAGCTACTTC+TGG | 0.385623 | 1_4:+5153853 | Msa0145470:CDS |
| AATGCTCTCTTGAGTCTTGA+TGG | 0.398250 | 1_4:+5156234 | Msa0145470:three_prime_UTR |
| TTGTCTCTCTGTTTCAAAAT+GGG | 0.414043 | 1_4:+5152473 | Msa0145470:exon |
| ACAATATATTGCCTAGTTAA+GGG | 0.416180 | 1_4:+5156351 | Msa0145470:three_prime_UTR |
| GGTGGAAGCTGACTTTGTTT+CGG | 0.419026 | 1_4:+5156085 | Msa0145470:exon |
| GTGGAGTTGTGTGGAATATA+GGG | 0.421556 | 1_4:+5153329 | Msa0145470:CDS |
| TTTGTTAGAAAATGTGGAAA+AGG | 0.421612 | 1_4:+5153520 | Msa0145470:CDS |
| GCATCAGCCATGACCTGCTC+AGG | 0.424246 | 1_4:-5153736 | None:intergenic |
| TGAGTCTGCTTCCCCTGAGC+AGG | 0.449413 | 1_4:+5153723 | Msa0145470:CDS |
| GCGAGAAAGCAATTGTTGAT+TGG | 0.450466 | 1_4:+5153875 | Msa0145470:CDS |
| TGGGAAGTGTGAACCGATCA+TGG | 0.456499 | 1_4:+5152492 | Msa0145470:CDS |
| TGCTTCCCCTGAGCAGGTCA+TGG | 0.458901 | 1_4:+5153729 | Msa0145470:CDS |
| ACAAAGAAATGGTTCAAAGT+TGG | 0.458957 | 1_4:-5152454 | None:intergenic |
| GAAGTCAACACTGCTTCTAA+TGG | 0.464985 | 1_4:+5153595 | Msa0145470:CDS |
| GCCTGGCCAGCCTAAGAAGC+GGG | 0.466869 | 1_4:+5153825 | Msa0145470:CDS |
| TATATCACATAAACTATTTG+AGG | 0.467509 | 1_4:-5156314 | None:intergenic |
| TGCGAAGAAATTGAGTGAAA+TGG | 0.470492 | 1_4:-5152550 | None:intergenic |
| GAAACAGAGAGACAAAGAAA+TGG | 0.473247 | 1_4:-5152465 | None:intergenic |
| AGAGCCTGCTTTCTCGCATA+AGG | 0.473371 | 1_4:-5153494 | None:intergenic |
| CCAACCGTTTGTGAAGTAAA+CGG | 0.478109 | 1_4:-5153371 | None:intergenic |
| CGAGAAAGCAATTGTTGATT+GGG | 0.485091 | 1_4:+5153876 | Msa0145470:CDS |
| GCGGTTCCCTCCCAAACAAC+CGG | 0.485847 | 1_4:+5153769 | Msa0145470:CDS |
| TCTTACTTTGTTAGAAAATG+TGG | 0.486876 | 1_4:+5153514 | Msa0145470:CDS |
| CATGGACAAACTCCTAGAAA+TGG | 0.504917 | 1_4:+5156282 | Msa0145470:three_prime_UTR |
| GACACCGTTTACTTCACAAA+CGG | 0.514012 | 1_4:+5153367 | Msa0145470:CDS |
| TACTTCACAAACGGTTGGCA+AGG | 0.517034 | 1_4:+5153376 | Msa0145470:CDS |
| CACATAATCAACCCTTAACT+AGG | 0.517999 | 1_4:-5156362 | None:intergenic |
| ATGCTCTCTTGAGTCTTGAT+GGG | 0.519593 | 1_4:+5156235 | Msa0145470:three_prime_UTR |
| AATAAAAGAACGGAACAGAA+AGG | 0.528722 | 1_4:-5152387 | None:intergenic |
| CCTGTTAACGAAGTTACGCC+TGG | 0.535294 | 1_4:+5153808 | Msa0145470:CDS |
| CTCTCTTGAGTCTTGATGGG+TGG | 0.537157 | 1_4:+5156238 | Msa0145470:three_prime_UTR |
| GAAATGGATGAACTGAAAAT+GGG | 0.537991 | 1_4:-5152534 | None:intergenic |
| AACATAACCTTCTATTCTGA+AGG | 0.545583 | 1_4:-5156123 | None:intergenic |
| AATGAAAAGACTTCTAATGC+TGG | 0.546042 | 1_4:+5153697 | Msa0145470:CDS |
| ATTTCTTAGTAGTAGATGCA+TGG | 0.551338 | 1_4:+5156264 | Msa0145470:three_prime_UTR |
| CCGTTTACTTCACAAACGGT+TGG | 0.558722 | 1_4:+5153371 | Msa0145470:CDS |
| AGGCAATATATTGTTCTCAA+AGG | 0.561581 | 1_4:-5156342 | None:intergenic |
| ATAAAAGAACGGAACAGAAA+GGG | 0.562420 | 1_4:-5152386 | None:intergenic |
| CATCAGCCATGACCTGCTCA+GGG | 0.563227 | 1_4:-5153735 | None:intergenic |
| CGCCTGGCCAGCCTAAGAAG+CGG | 0.563693 | 1_4:+5153824 | Msa0145470:CDS |
| GAAAGCAATTGTTGATTGGG+TGG | 0.568458 | 1_4:+5153879 | Msa0145470:CDS |
| AAATGTCTTCCTCCCATGAT+CGG | 0.572099 | 1_4:-5152505 | None:intergenic |
| CGTGAAGATCGTGAAATTGA+AGG | 0.574504 | 1_4:+5156064 | Msa0145470:CDS |
| ATATTCCACACAACTCCACT+AGG | 0.578077 | 1_4:-5153325 | None:intergenic |
| GATAGCACAAACTATTCTGA+AGG | 0.583435 | 1_4:-5156186 | None:intergenic |
| GAGACCTTATGCGAGAAAGC+AGG | 0.587625 | 1_4:+5153490 | Msa0145470:CDS |
| GCAAGAGGGCGACAAGGCAA+AGG | 0.587651 | 1_4:+5153552 | Msa0145470:CDS |
| GGGAAGTGTGAACCGATCAT+GGG | 0.593667 | 1_4:+5152493 | Msa0145470:CDS |
| GGCTGATGCAGTCACTATTG+CGG | 0.596142 | 1_4:+5153750 | Msa0145470:CDS |
| TACTGAGCAAGAGGGCGACA+AGG | 0.599125 | 1_4:+5153546 | Msa0145470:CDS |
| GAACGGAACAGAAAGGGTAC+AGG | 0.599703 | 1_4:-5152380 | None:intergenic |
| GTGAACCTTAAAGGTCCTAG+TGG | 0.609317 | 1_4:+5153310 | Msa0145470:CDS |
| AAAAGGTCATACTGAGCAAG+AGG | 0.615156 | 1_4:+5153537 | Msa0145470:CDS |
| AAGGTCCTAGTGGAGTTGTG+TGG | 0.624686 | 1_4:+5153320 | Msa0145470:CDS |
| GCTTGTAGCAAGGAAAACTC+AGG | 0.631925 | 1_4:+5153901 | Msa0145470:CDS |
| TGTTACAGTCAATAAAAGAA+CGG | 0.638014 | 1_4:-5152397 | None:intergenic |
| CCTGGCCAGCCTAAGAAGCG+GGG | 0.640983 | 1_4:+5153826 | Msa0145470:CDS |
| GTCAACACTGCTTCTAATGG+CGG | 0.645750 | 1_4:+5153598 | Msa0145470:CDS |
| AAGTGTGAACCGATCATGGG+AGG | 0.649028 | 1_4:+5152496 | Msa0145470:CDS |
| TGATTGGGTGGCTTGTAGCA+AGG | 0.654638 | 1_4:+5153891 | Msa0145470:CDS |
| GAAGATCGTGAAATTGAAGG+TGG | 0.655920 | 1_4:+5156067 | Msa0145470:CDS |
| TCTAATGGCGGTGTTGAATG+CGG | 0.661026 | 1_4:+5153610 | Msa0145470:CDS |
| AAAGGTCATACTGAGCAAGA+GGG | 0.680883 | 1_4:+5153538 | Msa0145470:CDS |
| ATCAGCCATGACCTGCTCAG+GGG | 0.726483 | 1_4:-5153734 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATACAAAAATTAAAAAGT+GGG | - | chr1_4:5152735-5152754 | None:intergenic | 15.0% |
| !! | AAGATACAAAAATTAAAAAG+TGG | - | chr1_4:5152736-5152755 | None:intergenic | 15.0% |
| !! | GTATATAAATATAATAAGCA+TGG | - | chr1_4:5152850-5152869 | None:intergenic | 15.0% |
| !!! | TGATTTTCTCAAATTATTAA+TGG | - | chr1_4:5152941-5152960 | None:intergenic | 15.0% |
| !! | TTCAATGTAATTATATGTAT+TGG | + | chr1_4:5152974-5152993 | Msa0145470:intron | 15.0% |
| !!! | TTTGAAGTTTTAATATTTCA+TGG | + | chr1_4:5153466-5153485 | Msa0145470:CDS | 15.0% |
| !! | AAAAAAAAAAAATGCAAACA+TGG | + | chr1_4:5155928-5155947 | Msa0145470:intron | 15.0% |
| !!! | AAATTGTCTGAAAATGTTTT+AGG | - | chr1_4:5153268-5153287 | None:intergenic | 20.0% |
| !!! | ATGTATCAACTTAATTTTGA+GGG | + | chr1_4:5154370-5154389 | Msa0145470:intron | 20.0% |
| !!! | TATTTTAATGATGGTCAAAA+AGG | - | chr1_4:5154572-5154591 | None:intergenic | 20.0% |
| !! | AGAAATTAAAGAGAAAGAAA+TGG | - | chr1_4:5154603-5154622 | None:intergenic | 20.0% |
| !! | CAAAACATATAGAAATTGAT+CGG | - | chr1_4:5154826-5154845 | None:intergenic | 20.0% |
| !! | TATATCACATAAACTATTTG+AGG | - | chr1_4:5156317-5156336 | None:intergenic | 20.0% |
| ! | TGTTACAGTCAATAAAAGAA+CGG | - | chr1_4:5152400-5152419 | None:intergenic | 25.0% |
| !! | TTTTTGTGTTATCAAAGGAA+AGG | - | chr1_4:5152430-5152449 | None:intergenic | 25.0% |
| ! | AATATGAACACTTAAGAACA+TGG | - | chr1_4:5152628-5152647 | None:intergenic | 25.0% |
| ! | TGTGTATATAATATGAAGCA+CGG | + | chr1_4:5152885-5152904 | Msa0145470:intron | 25.0% |
| ! | TAGTGTATATATAATGGCTT+GGG | + | chr1_4:5153070-5153089 | Msa0145470:intron | 25.0% |
| ! | TGGATTAAAGAAAGTGAATA+AGG | + | chr1_4:5153164-5153183 | Msa0145470:intron | 25.0% |
| ! | ATGTTGATACATTTATTTGC+AGG | + | chr1_4:5153237-5153256 | Msa0145470:intron | 25.0% |
| ! | TCTTACTTTGTTAGAAAATG+TGG | + | chr1_4:5153514-5153533 | Msa0145470:CDS | 25.0% |
| ! | TTTGTTAGAAAATGTGGAAA+AGG | + | chr1_4:5153520-5153539 | Msa0145470:CDS | 25.0% |
| !! | TTTTCATTGGTATTTTCGAA+AGG | - | chr1_4:5153685-5153704 | None:intergenic | 25.0% |
| !! | TTGTTTTCCGGTTTTTATAT+TGG | + | chr1_4:5154087-5154106 | Msa0145470:intron | 25.0% |
| ! | CTTATGACCAATATAAAAAC+CGG | - | chr1_4:5154097-5154116 | None:intergenic | 25.0% |
| !! | TTTTATATTGGTCATAAGCA+TGG | + | chr1_4:5154099-5154118 | Msa0145470:intron | 25.0% |
| ! | TGACAACAAAAAAAAAAAGC+TGG | - | chr1_4:5154272-5154291 | None:intergenic | 25.0% |
| ! | TTGAATCATGAATTCTTATG+AGG | + | chr1_4:5154337-5154356 | Msa0145470:intron | 25.0% |
| !! | GATGTATCAACTTAATTTTG+AGG | + | chr1_4:5154369-5154388 | Msa0145470:intron | 25.0% |
| !!! | GAATGCTAGTATTTTAATGA+TGG | - | chr1_4:5154581-5154600 | None:intergenic | 25.0% |
| ! | TGAGAATAAATTTAGACCTA+TGG | - | chr1_4:5154986-5155005 | None:intergenic | 25.0% |
| ! | TTGATTTATTTGGTACACAT+AGG | - | chr1_4:5155294-5155313 | None:intergenic | 25.0% |
| !! | AGCATTTATTGATGGTTAAA+AGG | - | chr1_4:5155459-5155478 | None:intergenic | 25.0% |
| !! | TTCTCTTTAATTTCATGCTT+CGG | + | chr1_4:5155503-5155522 | Msa0145470:intron | 25.0% |
| !! | ATAAGATTTGATTCGTGATT+CGG | + | chr1_4:5155576-5155595 | Msa0145470:intron | 25.0% |
| ! | AGGTAACAAAAATTTGGAAA+AGG | - | chr1_4:5155725-5155744 | None:intergenic | 25.0% |
| ! | ATTGGTAGGTAACAAAAATT+TGG | - | chr1_4:5155731-5155750 | None:intergenic | 25.0% |
| ! | GAGGAATGAAGAAAAAAAAA+TGG | - | chr1_4:5156008-5156027 | None:intergenic | 25.0% |
| ! | TGTAAAAAAAAAGAGAGAGA+AGG | + | chr1_4:5156150-5156169 | Msa0145470:three_prime_UTR | 25.0% |
| ! | AACAATATATTGCCTAGTTA+AGG | + | chr1_4:5156350-5156369 | Msa0145470:three_prime_UTR | 25.0% |
| ATAAAAGAACGGAACAGAAA+GGG | - | chr1_4:5152389-5152408 | None:intergenic | 30.0% | |
| AATAAAAGAACGGAACAGAA+AGG | - | chr1_4:5152390-5152409 | None:intergenic | 30.0% | |
| ! | GAAGCTTTTTGTGTTATCAA+AGG | - | chr1_4:5152435-5152454 | None:intergenic | 30.0% |
| ACAAAGAAATGGTTCAAAGT+TGG | - | chr1_4:5152457-5152476 | None:intergenic | 30.0% | |
| TTTGTCTCTCTGTTTCAAAA+TGG | + | chr1_4:5152472-5152491 | Msa0145470:exon | 30.0% | |
| TTGTCTCTCTGTTTCAAAAT+GGG | + | chr1_4:5152473-5152492 | Msa0145470:exon | 30.0% | |
| GAAATGGATGAACTGAAAAT+GGG | - | chr1_4:5152537-5152556 | None:intergenic | 30.0% | |
| TGAAATGGATGAACTGAAAA+TGG | - | chr1_4:5152538-5152557 | None:intergenic | 30.0% | |
| TATATATACACTACGAAGCA+AGG | - | chr1_4:5153063-5153082 | None:intergenic | 30.0% | |
| GCTTCGTAGTGTATATATAA+TGG | + | chr1_4:5153064-5153083 | Msa0145470:intron | 30.0% | |
| GTAGTGTATATATAATGGCT+TGG | + | chr1_4:5153069-5153088 | Msa0145470:intron | 30.0% | |
| !!! | CTTTTGAGACAATATGTTCA+TGG | + | chr1_4:5153118-5153137 | Msa0145470:intron | 30.0% |
| !!! | CTCCTTTTTTTCAAGTACAA+TGG | + | chr1_4:5153433-5153452 | Msa0145470:CDS | 30.0% |
| ! | AGCATTAGAAGTCTTTTCAT+TGG | - | chr1_4:5153698-5153717 | None:intergenic | 30.0% |
| AATGAAAAGACTTCTAATGC+TGG | + | chr1_4:5153697-5153716 | Msa0145470:CDS | 30.0% | |
| ATAAAAACCGGAAAACAAAC+TGG | - | chr1_4:5154085-5154104 | None:intergenic | 30.0% | |
| ! | TTCAGTTTAGAATCGAATCA+AGG | - | chr1_4:5154157-5154176 | None:intergenic | 30.0% |
| ATCAAATGACAAAAGAAACG+TGG | - | chr1_4:5154310-5154329 | None:intergenic | 30.0% | |
| !! | TTTCTTGCTTCTGTTATTTC+TGG | + | chr1_4:5154618-5154637 | Msa0145470:intron | 30.0% |
| ATTAAAGAAGAGTTGGACAA+TGG | - | chr1_4:5154797-5154816 | None:intergenic | 30.0% | |
| GATTTGAAGATACAATGTGA+AGG | - | chr1_4:5154919-5154938 | None:intergenic | 30.0% | |
| ! | TAGCAACTCAATTTTTGCAT+AGG | + | chr1_4:5155046-5155065 | Msa0145470:intron | 30.0% |
| ! | TACATTGATGTTGATTATGC+AGG | - | chr1_4:5155114-5155133 | None:intergenic | 30.0% |
| AGAGGACTCTTATCTAAATT+AGG | - | chr1_4:5155159-5155178 | None:intergenic | 30.0% | |
| ATGGTGAGTCAATTCATTAA+TGG | - | chr1_4:5155246-5155265 | None:intergenic | 30.0% | |
| ! | CACATTCCATTTGCAATTTT+TGG | + | chr1_4:5155479-5155498 | Msa0145470:intron | 30.0% |
| GAGAAACCAAAAATTGCAAA+TGG | - | chr1_4:5155488-5155507 | None:intergenic | 30.0% | |
| ATGCCTTATCTTACATTGAA+TGG | + | chr1_4:5155882-5155901 | Msa0145470:intron | 30.0% | |
| TGCCTTATCTTACATTGAAT+GGG | + | chr1_4:5155883-5155902 | Msa0145470:intron | 30.0% | |
| TCTTCATTCCTCATAATTTC+AGG | + | chr1_4:5156016-5156035 | Msa0145470:intron | 30.0% | |
| CTTCATTCCTCATAATTTCA+GGG | + | chr1_4:5156017-5156036 | Msa0145470:intron | 30.0% | |
| TTATGTTCCTTCAGAATAGA+AGG | + | chr1_4:5156116-5156135 | Msa0145470:three_prime_UTR | 30.0% | |
| AACATAACCTTCTATTCTGA+AGG | - | chr1_4:5156126-5156145 | None:intergenic | 30.0% | |
| ATTTCTTAGTAGTAGATGCA+TGG | + | chr1_4:5156264-5156283 | Msa0145470:three_prime_UTR | 30.0% | |
| CATAAACTATTTGAGGAGTT+TGG | - | chr1_4:5156310-5156329 | None:intergenic | 30.0% | |
| AGGCAATATATTGTTCTCAA+AGG | - | chr1_4:5156345-5156364 | None:intergenic | 30.0% | |
| GAAACAGAGAGACAAAGAAA+TGG | - | chr1_4:5152468-5152487 | None:intergenic | 35.0% | |
| TGCGAAGAAATTGAGTGAAA+TGG | - | chr1_4:5152553-5152572 | None:intergenic | 35.0% | |
| TGGAAGGAAAGAAGAATGAA+GGG | - | chr1_4:5152608-5152627 | None:intergenic | 35.0% | |
| ATGGAAGGAAAGAAGAATGA+AGG | - | chr1_4:5152609-5152628 | None:intergenic | 35.0% | |
| TGAACACTTAAGAACATGGA+AGG | - | chr1_4:5152624-5152643 | None:intergenic | 35.0% | |
| TATAATATGAAGCACGGACA+CGG | + | chr1_4:5152891-5152910 | Msa0145470:intron | 35.0% | |
| !! | TATATGTATTGGTGTCGTGT+CGG | + | chr1_4:5152985-5153004 | Msa0145470:intron | 35.0% |
| !!! | CCTTTAAGGTTCACATTTTC+AGG | - | chr1_4:5153304-5153323 | None:intergenic | 35.0% |
| CCTGAAAATGTGAACCTTAA+AGG | + | chr1_4:5153301-5153320 | Msa0145470:CDS | 35.0% | |
| CGCCATTGTACTTGAAAAAA+AGG | - | chr1_4:5153438-5153457 | None:intergenic | 35.0% | |
| !! | AATGCGGTTCTGAGAAATTT+CGG | + | chr1_4:5153626-5153645 | Msa0145470:CDS | 35.0% |
| !! | TTTTCGAAAGGTACAGCTAA+TGG | - | chr1_4:5153673-5153692 | None:intergenic | 35.0% |
| ! | CGAGAAAGCAATTGTTGATT+GGG | + | chr1_4:5153876-5153895 | Msa0145470:CDS | 35.0% |
| ACTAGAGATTCGTATCAACT+GGG | - | chr1_4:5154180-5154199 | None:intergenic | 35.0% | |
| AATGACAAAAGAAACGTGGT+TGG | - | chr1_4:5154306-5154325 | None:intergenic | 35.0% | |
| GGGTTTCCTTTCAACTAATT+CGG | - | chr1_4:5154667-5154686 | None:intergenic | 35.0% | |
| !! | TTAGCAGAAGTGTTGGTAAA+GGG | - | chr1_4:5154740-5154759 | None:intergenic | 35.0% |
| !! | ATTAGCAGAAGTGTTGGTAA+AGG | - | chr1_4:5154741-5154760 | None:intergenic | 35.0% |
| GCACTTCATTAAAGAAGAGT+TGG | - | chr1_4:5154804-5154823 | None:intergenic | 35.0% | |
| ATAATCCTATTCAGCATGAC+AGG | - | chr1_4:5154850-5154869 | None:intergenic | 35.0% | |
| ATCATACAACACAGCTTCAT+TGG | + | chr1_4:5154892-5154911 | Msa0145470:intron | 35.0% | |
| AAATTTAGACCTATGGCACA+AGG | - | chr1_4:5154979-5154998 | None:intergenic | 35.0% | |
| ! | GAGTAAGAAGCATAGTTTAG+TGG | - | chr1_4:5155022-5155041 | None:intergenic | 35.0% |
| ! | GCAAAAATTGAGTTGCTAGA+AGG | - | chr1_4:5155044-5155063 | None:intergenic | 35.0% |
| ATTAGGAGGAAGACTAACTA+TGG | - | chr1_4:5155142-5155161 | None:intergenic | 35.0% | |
| GGACTCTTATCTAAATTAGG+AGG | - | chr1_4:5155156-5155175 | None:intergenic | 35.0% | |
| TCAATTCATTAATGGTCCGA+GGG | - | chr1_4:5155238-5155257 | None:intergenic | 35.0% | |
| ! | AGGGGGGAAATTGATTTATT+TGG | - | chr1_4:5155304-5155323 | None:intergenic | 35.0% |
| TCAAAGCTTGTCTTGTGATT+GGG | + | chr1_4:5155354-5155373 | Msa0145470:intron | 35.0% | |
| GGTTAAAAGGATATGCAGAA+GGG | - | chr1_4:5155446-5155465 | None:intergenic | 35.0% | |
| TGGTTAAAAGGATATGCAGA+AGG | - | chr1_4:5155447-5155466 | None:intergenic | 35.0% | |
| GGAATGTGAGCATTTATTGA+TGG | - | chr1_4:5155467-5155486 | None:intergenic | 35.0% | |
| ! | TTTCATGCTTCGGTTATTTC+TGG | + | chr1_4:5155513-5155532 | Msa0145470:intron | 35.0% |
| ! | TGATTCGTGATTCGGAAAAT+AGG | + | chr1_4:5155584-5155603 | Msa0145470:intron | 35.0% |
| !! | GAATATCGATTTGATAACCC+TGG | + | chr1_4:5155625-5155644 | Msa0145470:intron | 35.0% |
| GTTACCTACCAATATGTTGA+TGG | + | chr1_4:5155738-5155757 | Msa0145470:intron | 35.0% | |
| TCTGTTTCATACCTGGATAA+GGG | - | chr1_4:5155768-5155787 | None:intergenic | 35.0% | |
| ATCTGTTTCATACCTGGATA+AGG | - | chr1_4:5155769-5155788 | None:intergenic | 35.0% | |
| GCCTTATCTTACATTGAATG+GGG | + | chr1_4:5155884-5155903 | Msa0145470:intron | 35.0% | |
| TCCCCATTCAATGTAAGATA+AGG | - | chr1_4:5155888-5155907 | None:intergenic | 35.0% | |
| GATAGCACAAACTATTCTGA+AGG | - | chr1_4:5156189-5156208 | None:intergenic | 35.0% | |
| AAATGTCTTCCTCCCATGAT+CGG | - | chr1_4:5152508-5152527 | None:intergenic | 40.0% | |
| ATCCACAAAACCATGCTTGA+TGG | - | chr1_4:5153149-5153168 | None:intergenic | 40.0% | |
| ATATTCCACACAACTCCACT+AGG | - | chr1_4:5153328-5153347 | None:intergenic | 40.0% | |
| AGTGGAGTTGTGTGGAATAT+AGG | + | chr1_4:5153328-5153347 | Msa0145470:CDS | 40.0% | |
| GTGGAGTTGTGTGGAATATA+GGG | + | chr1_4:5153329-5153348 | Msa0145470:CDS | 40.0% | |
| GACACCGTTTACTTCACAAA+CGG | + | chr1_4:5153367-5153386 | Msa0145470:CDS | 40.0% | |
| CCAACCGTTTGTGAAGTAAA+CGG | - | chr1_4:5153374-5153393 | None:intergenic | 40.0% | |
| AAAAGGTCATACTGAGCAAG+AGG | + | chr1_4:5153537-5153556 | Msa0145470:CDS | 40.0% | |
| AAAGGTCATACTGAGCAAGA+GGG | + | chr1_4:5153538-5153557 | Msa0145470:CDS | 40.0% | |
| GAAGTCAACACTGCTTCTAA+TGG | + | chr1_4:5153595-5153614 | Msa0145470:CDS | 40.0% | |
| AACTTCGTTAACAGGCTTCT+TGG | - | chr1_4:5153803-5153822 | None:intergenic | 40.0% | |
| GCGAGAAAGCAATTGTTGAT+TGG | + | chr1_4:5153875-5153894 | Msa0145470:CDS | 40.0% | |
| ! | GAAAGCAATTGTTGATTGGG+TGG | + | chr1_4:5153879-5153898 | Msa0145470:CDS | 40.0% |
| !! | GTCCTAACCAGTTTGTTTTC+CGG | + | chr1_4:5154075-5154094 | Msa0145470:intron | 40.0% |
| AACCGGAAAACAAACTGGTT+AGG | - | chr1_4:5154080-5154099 | None:intergenic | 40.0% | |
| CACTAGAGATTCGTATCAAC+TGG | - | chr1_4:5154181-5154200 | None:intergenic | 40.0% | |
| !!! | TACTCAAAGTTTTGGTAGCG+TGG | - | chr1_4:5154244-5154263 | None:intergenic | 40.0% |
| ! | TGGTTCGCTACTCAAAGTTT+TGG | - | chr1_4:5154252-5154271 | None:intergenic | 40.0% |
| ! | GGATTCGGTTAATATGAGGT+GGG | + | chr1_4:5154419-5154438 | Msa0145470:intron | 40.0% |
| TTAATATGAGGTGGGAGTTG+TGG | + | chr1_4:5154427-5154446 | Msa0145470:intron | 40.0% | |
| TTCCTTTCAACTAATTCGGC+AGG | - | chr1_4:5154663-5154682 | None:intergenic | 40.0% | |
| AAACGATTCGACCAACTTAC+TGG | - | chr1_4:5154707-5154726 | None:intergenic | 40.0% | |
| ! | AGTTGGTCGAATCGTTTTGA+TGG | + | chr1_4:5154710-5154729 | Msa0145470:intron | 40.0% |
| ! | GCATCAATTAGCAGAAGTGT+TGG | - | chr1_4:5154747-5154766 | None:intergenic | 40.0% |
| TTTGTCCTGTCATGCTGAAT+AGG | + | chr1_4:5154842-5154861 | Msa0145470:intron | 40.0% | |
| TCAGTACCATCTTCATCCAT+AGG | + | chr1_4:5154941-5154960 | Msa0145470:intron | 40.0% | |
| AAGGAATATGTGAGCTCCTA+TGG | - | chr1_4:5154960-5154979 | None:intergenic | 40.0% | |
| TCACATATTCCTTGTGCCAT+AGG | + | chr1_4:5154967-5154986 | Msa0145470:intron | 40.0% | |
| TGATTATGCAGGTTCAGTGA+GGG | - | chr1_4:5155103-5155122 | None:intergenic | 40.0% | |
| TTGATTATGCAGGTTCAGTG+AGG | - | chr1_4:5155104-5155123 | None:intergenic | 40.0% | |
| GTCAATTCATTAATGGTCCG+AGG | - | chr1_4:5155239-5155258 | None:intergenic | 40.0% | |
| !! | TTTGGCTTGTGCAGTTAGTA+TGG | - | chr1_4:5155265-5155284 | None:intergenic | 40.0% |
| AAAATTGGCAAGCTACTAGG+GGG | - | chr1_4:5155321-5155340 | None:intergenic | 40.0% | |
| CAAAATTGGCAAGCTACTAG+GGG | - | chr1_4:5155322-5155341 | None:intergenic | 40.0% | |
| CCAAAATTGGCAAGCTACTA+GGG | - | chr1_4:5155323-5155342 | None:intergenic | 40.0% | |
| CAATCACAAGACAAGCTTTG+AGG | - | chr1_4:5155355-5155374 | None:intergenic | 40.0% | |
| CTCAAAGCTTGTCTTGTGAT+TGG | + | chr1_4:5155353-5155372 | Msa0145470:intron | 40.0% | |
| !! | TGTGTAGAGCATTGCTCTTT+GGG | + | chr1_4:5155406-5155425 | Msa0145470:intron | 40.0% |
| CCTTCCATCAACATATTGGT+AGG | - | chr1_4:5155745-5155764 | None:intergenic | 40.0% | |
| ! | CCTACCAATATGTTGATGGA+AGG | + | chr1_4:5155742-5155761 | Msa0145470:intron | 40.0% |
| CGTCAAATCTGTTTCATACC+TGG | - | chr1_4:5155775-5155794 | None:intergenic | 40.0% | |
| GTATGAAACAGATTTGACGC+AGG | + | chr1_4:5155776-5155795 | Msa0145470:intron | 40.0% | |
| TTGGTAAAGCTACACAAGTG+TGG | - | chr1_4:5155850-5155869 | None:intergenic | 40.0% | |
| !! | AAGGCATTGCTCAAGCATAT+TGG | - | chr1_4:5155869-5155888 | None:intergenic | 40.0% |
| ATTTGAGCCATGAGAGATCA+TGG | - | chr1_4:5155960-5155979 | None:intergenic | 40.0% | |
| CTTTGCTCCCTGAAATTATG+AGG | - | chr1_4:5156027-5156046 | None:intergenic | 40.0% | |
| CGTGAAGATCGTGAAATTGA+AGG | + | chr1_4:5156064-5156083 | Msa0145470:CDS | 40.0% | |
| GAAGATCGTGAAATTGAAGG+TGG | + | chr1_4:5156067-5156086 | Msa0145470:CDS | 40.0% | |
| AATGCTCTCTTGAGTCTTGA+TGG | + | chr1_4:5156234-5156253 | Msa0145470:three_prime_UTR | 40.0% | |
| ATGCTCTCTTGAGTCTTGAT+GGG | + | chr1_4:5156235-5156254 | Msa0145470:three_prime_UTR | 40.0% | |
| CATGGACAAACTCCTAGAAA+TGG | + | chr1_4:5156282-5156301 | Msa0145470:three_prime_UTR | 40.0% | |
| CATGGGAGGAAGACATTTAC+TGG | + | chr1_4:5152510-5152529 | Msa0145470:CDS | 45.0% | |
| ACACGACACATATCCGATAC+CGG | + | chr1_4:5153014-5153033 | Msa0145470:intron | 45.0% | |
| CATGGATTCACCATCAAGCA+TGG | + | chr1_4:5153136-5153155 | Msa0145470:intron | 45.0% | |
| !! | CACCATCAAGCATGGTTTTG+TGG | + | chr1_4:5153144-5153163 | Msa0145470:intron | 45.0% |
| GTGAACCTTAAAGGTCCTAG+TGG | + | chr1_4:5153310-5153329 | Msa0145470:CDS | 45.0% | |
| CAACTCCACTAGGACCTTTA+AGG | - | chr1_4:5153318-5153337 | None:intergenic | 45.0% | |
| CCGTTTACTTCACAAACGGT+TGG | + | chr1_4:5153371-5153390 | Msa0145470:CDS | 45.0% | |
| TACTTCACAAACGGTTGGCA+AGG | + | chr1_4:5153376-5153395 | Msa0145470:CDS | 45.0% | |
| GTCAACACTGCTTCTAATGG+CGG | + | chr1_4:5153598-5153617 | Msa0145470:CDS | 45.0% | |
| ! | TCTAATGGCGGTGTTGAATG+CGG | + | chr1_4:5153610-5153629 | Msa0145470:CDS | 45.0% |
| !! | TTTTTGCCGGTTGTTTGGGA+GGG | - | chr1_4:5153778-5153797 | None:intergenic | 45.0% |
| !! | GGTCTTTTTGCCGGTTGTTT+GGG | - | chr1_4:5153782-5153801 | None:intergenic | 45.0% |
| !! | TGGTCTTTTTGCCGGTTGTT+TGG | - | chr1_4:5153783-5153802 | None:intergenic | 45.0% |
| !! | AGGCTTCTTGGTCTTTTTGC+CGG | - | chr1_4:5153791-5153810 | None:intergenic | 45.0% |
| !! | CCAGAAGTAGCTGATTTTGC+TGG | - | chr1_4:5153856-5153875 | None:intergenic | 45.0% |
| CCAGCAAAATCAGCTACTTC+TGG | + | chr1_4:5153853-5153872 | Msa0145470:CDS | 45.0% | |
| GCTTGTAGCAAGGAAAACTC+AGG | + | chr1_4:5153901-5153920 | Msa0145470:CDS | 45.0% | |
| TGAGGGAAAGTGAGAATCAG+TGG | + | chr1_4:5154387-5154406 | Msa0145470:intron | 45.0% | |
| GAGGGAAAGTGAGAATCAGT+GGG | + | chr1_4:5154388-5154407 | Msa0145470:intron | 45.0% | |
| !! | TGAGAATCAGTGGGTTAGCT+GGG | + | chr1_4:5154397-5154416 | Msa0145470:intron | 45.0% |
| ! | CTGGGGATTCGGTTAATATG+AGG | + | chr1_4:5154415-5154434 | Msa0145470:intron | 45.0% |
| ! | GGGATTCGGTTAATATGAGG+TGG | + | chr1_4:5154418-5154437 | Msa0145470:intron | 45.0% |
| ! | TGGTCAAAAAGGCATGCAGA+AGG | - | chr1_4:5154561-5154580 | None:intergenic | 45.0% |
| CTTTCAACTAATTCGGCAGG+CGG | - | chr1_4:5154660-5154679 | None:intergenic | 45.0% | |
| TGGCAAAGGGTCTGAACAAT+GGG | - | chr1_4:5154687-5154706 | None:intergenic | 45.0% | |
| TCGACCAACTTACTGGCAAA+GGG | - | chr1_4:5154700-5154719 | None:intergenic | 45.0% | |
| TTCGACCAACTTACTGGCAA+AGG | - | chr1_4:5154701-5154720 | None:intergenic | 45.0% | |
| TGAGCTCCTATGGATGAAGA+TGG | - | chr1_4:5154950-5154969 | None:intergenic | 45.0% | |
| ! | GCATAGGAAAGCACAGTAGA+TGG | + | chr1_4:5155062-5155081 | Msa0145470:intron | 45.0% |
| AGGAGGAAGACTAACTATGG+AGG | - | chr1_4:5155139-5155158 | None:intergenic | 45.0% | |
| TAGATAAGAGTCCTCTCCCT+AGG | + | chr1_4:5155163-5155182 | Msa0145470:intron | 45.0% | |
| AGATAAGAGTCCTCTCCCTA+GGG | + | chr1_4:5155164-5155183 | Msa0145470:intron | 45.0% | |
| GATATCTCCAAGACACCCTA+GGG | - | chr1_4:5155182-5155201 | None:intergenic | 45.0% | |
| ACTTGCAAATGTCTCACCCT+CGG | + | chr1_4:5155219-5155238 | Msa0145470:intron | 45.0% | |
| CTAACTGCACAAGCCAAATC+TGG | + | chr1_4:5155267-5155286 | Msa0145470:intron | 45.0% | |
| GGTACACATAGGTCCAGATT+TGG | - | chr1_4:5155283-5155302 | None:intergenic | 45.0% | |
| AAATTGGCAAGCTACTAGGG+GGG | - | chr1_4:5155320-5155339 | None:intergenic | 45.0% | |
| !! | CCCTAGTAGCTTGCCAATTT+TGG | + | chr1_4:5155320-5155339 | Msa0145470:intron | 45.0% |
| GCCAAAATTGGCAAGCTACT+AGG | - | chr1_4:5155324-5155343 | None:intergenic | 45.0% | |
| GAGGAGGGAATTGCCAAAAT+TGG | - | chr1_4:5155336-5155355 | None:intergenic | 45.0% | |
| !! | CACAAGACAAGCTTTGAGGA+GGG | - | chr1_4:5155351-5155370 | None:intergenic | 45.0% |
| !! | TCACAAGACAAGCTTTGAGG+AGG | - | chr1_4:5155352-5155371 | None:intergenic | 45.0% |
| !! | CTGTGTAGAGCATTGCTCTT+TGG | + | chr1_4:5155405-5155424 | Msa0145470:intron | 45.0% |
| CTCATACCCGAGTCTAACTT+AGG | - | chr1_4:5155652-5155671 | None:intergenic | 45.0% | |
| AGGGCCTTCCATCAACATAT+TGG | - | chr1_4:5155749-5155768 | None:intergenic | 45.0% | |
| GTGCTTTCCATGATCTCTCA+TGG | + | chr1_4:5155950-5155969 | Msa0145470:intron | 45.0% | |
| ! | GGTGGAAGCTGACTTTGTTT+CGG | + | chr1_4:5156085-5156104 | Msa0145470:exon | 45.0% |
| AGGAGTTTGGCACCATTTCT+AGG | - | chr1_4:5156297-5156316 | None:intergenic | 45.0% | |
| ! | GAACGGAACAGAAAGGGTAC+AGG | - | chr1_4:5152383-5152402 | None:intergenic | 50.0% |
| ! | TGGGAAGTGTGAACCGATCA+TGG | + | chr1_4:5152492-5152511 | Msa0145470:CDS | 50.0% |
| ! | GGGAAGTGTGAACCGATCAT+GGG | + | chr1_4:5152493-5152512 | Msa0145470:CDS | 50.0% |
| AAGTGTGAACCGATCATGGG+AGG | + | chr1_4:5152496-5152515 | Msa0145470:CDS | 50.0% | |
| !! | TATTGGTGTCGTGTCGGTGT+CGG | + | chr1_4:5152991-5153010 | Msa0145470:intron | 50.0% |
| CACGACACATATCCGATACC+GGG | + | chr1_4:5153015-5153034 | Msa0145470:intron | 50.0% | |
| TACGAAGCAAGGACACTCCT+CGG | - | chr1_4:5153052-5153071 | None:intergenic | 50.0% | |
| AAGGTCCTAGTGGAGTTGTG+TGG | + | chr1_4:5153320-5153339 | Msa0145470:CDS | 50.0% | |
| GAGACCTTATGCGAGAAAGC+AGG | + | chr1_4:5153490-5153509 | Msa0145470:CDS | 50.0% | |
| AGAGCCTGCTTTCTCGCATA+AGG | - | chr1_4:5153497-5153516 | None:intergenic | 50.0% | |
| GGCTGATGCAGTCACTATTG+CGG | + | chr1_4:5153750-5153769 | Msa0145470:CDS | 50.0% | |
| !! | CTTTTTGCCGGTTGTTTGGG+AGG | - | chr1_4:5153779-5153798 | None:intergenic | 50.0% |
| CCAGGCGTAACTTCGTTAAC+AGG | - | chr1_4:5153811-5153830 | None:intergenic | 50.0% | |
| CCTGTTAACGAAGTTACGCC+TGG | + | chr1_4:5153808-5153827 | Msa0145470:CDS | 50.0% | |
| ! | TGATTGGGTGGCTTGTAGCA+AGG | + | chr1_4:5153891-5153910 | Msa0145470:CDS | 50.0% |
| !! | GTGAGAATCAGTGGGTTAGC+TGG | + | chr1_4:5154396-5154415 | Msa0145470:intron | 50.0% |
| !! | GAGAATCAGTGGGTTAGCTG+GGG | + | chr1_4:5154398-5154417 | Msa0145470:intron | 50.0% |
| TGGGAGTTGTGGAGTGATAG+AGG | + | chr1_4:5154438-5154457 | Msa0145470:intron | 50.0% | |
| GGGAGTTGTGGAGTGATAGA+GGG | + | chr1_4:5154439-5154458 | Msa0145470:intron | 50.0% | |
| GGAGTTGTGGAGTGATAGAG+GGG | + | chr1_4:5154440-5154459 | Msa0145470:intron | 50.0% | |
| GAGTTGTGGAGTGATAGAGG+GGG | + | chr1_4:5154441-5154460 | Msa0145470:intron | 50.0% | |
| !! | GAGTGATAGAGGGGGTATCA+TGG | + | chr1_4:5154449-5154468 | Msa0145470:intron | 50.0% |
| CGCCTGCCGAATTAGTTGAA+AGG | + | chr1_4:5154658-5154677 | Msa0145470:intron | 50.0% | |
| CTGGCAAAGGGTCTGAACAA+TGG | - | chr1_4:5154688-5154707 | None:intergenic | 50.0% | |
| CAGACCCTTTGCCAGTAAGT+TGG | + | chr1_4:5154693-5154712 | Msa0145470:intron | 50.0% | |
| !! | GGTCGAATCGTTTTGATGGC+AGG | + | chr1_4:5154714-5154733 | Msa0145470:intron | 50.0% |
| CGATATCTCCAAGACACCCT+AGG | - | chr1_4:5155183-5155202 | None:intergenic | 50.0% | |
| !! | GTAGAGCATTGCTCTTTGGG+TGG | + | chr1_4:5155409-5155428 | Msa0145470:intron | 50.0% |
| AGCATTGCTCTTTGGGTGGT+AGG | + | chr1_4:5155413-5155432 | Msa0145470:intron | 50.0% | |
| GCATTGCTCTTTGGGTGGTA+GGG | + | chr1_4:5155414-5155433 | Msa0145470:intron | 50.0% | |
| CCGAGTCTAACTTAGGACCA+GGG | - | chr1_4:5155645-5155664 | None:intergenic | 50.0% | |
| CCCTGGTCCTAAGTTAGACT+CGG | + | chr1_4:5155642-5155661 | Msa0145470:intron | 50.0% | |
| CCTGGTCCTAAGTTAGACTC+GGG | + | chr1_4:5155643-5155662 | Msa0145470:intron | 50.0% | |
| TTGATGGAAGGCCCTTATCC+AGG | + | chr1_4:5155754-5155773 | Msa0145470:intron | 50.0% | |
| CTCTCTTGAGTCTTGATGGG+TGG | + | chr1_4:5156238-5156257 | Msa0145470:three_prime_UTR | 50.0% | |
| TGAAGCACGGACACGGAAAG+TGG | + | chr1_4:5152898-5152917 | Msa0145470:intron | 55.0% | |
| GATTAGGCGTGTCCCGGTAT+CGG | - | chr1_4:5153030-5153049 | None:intergenic | 55.0% | |
| GCAAGGACACTCCTCGGATT+AGG | - | chr1_4:5153046-5153065 | None:intergenic | 55.0% | |
| TACTGAGCAAGAGGGCGACA+AGG | + | chr1_4:5153546-5153565 | Msa0145470:CDS | 55.0% | |
| ATCAGCCATGACCTGCTCAG+GGG | - | chr1_4:5153737-5153756 | None:intergenic | 55.0% | |
| CATCAGCCATGACCTGCTCA+GGG | - | chr1_4:5153738-5153757 | None:intergenic | 55.0% | |
| !! | CAGTGGGTTAGCTGGGGATT+CGG | + | chr1_4:5154404-5154423 | Msa0145470:intron | 55.0% |
| TGCTCTTTGGGTGGTAGGGA+TGG | + | chr1_4:5155418-5155437 | Msa0145470:intron | 55.0% | |
| CCCGAGTCTAACTTAGGACC+AGG | - | chr1_4:5155646-5155665 | None:intergenic | 55.0% | |
| ! | TCCTCGGATTAGGCGTGTCC+CGG | - | chr1_4:5153036-5153055 | None:intergenic | 60.0% |
| GCAAGAGGGCGACAAGGCAA+AGG | + | chr1_4:5153552-5153571 | Msa0145470:CDS | 60.0% | |
| TGAGTCTGCTTCCCCTGAGC+AGG | + | chr1_4:5153723-5153742 | Msa0145470:CDS | 60.0% | |
| TGCTTCCCCTGAGCAGGTCA+TGG | + | chr1_4:5153729-5153748 | Msa0145470:CDS | 60.0% | |
| GCATCAGCCATGACCTGCTC+AGG | - | chr1_4:5153739-5153758 | None:intergenic | 60.0% | |
| GCGGTTCCCTCCCAAACAAC+CGG | + | chr1_4:5153769-5153788 | Msa0145470:CDS | 60.0% | |
| GTCTTCCCCGCTTCTTAGGC+TGG | - | chr1_4:5153834-5153853 | None:intergenic | 60.0% | |
| !! | GCTGGTCTTCCCCGCTTCTT+AGG | - | chr1_4:5153838-5153857 | None:intergenic | 60.0% |
| ! | GTCCTCTCCCTAGGGTGTCT+TGG | + | chr1_4:5155172-5155191 | Msa0145470:intron | 60.0% |
| CTCCAAGACACCCTAGGGAG+AGG | - | chr1_4:5155177-5155196 | None:intergenic | 60.0% | |
| ACCGGGACACGCCTAATCCG+AGG | + | chr1_4:5153032-5153051 | Msa0145470:intron | 65.0% | |
| CGCCTGGCCAGCCTAAGAAG+CGG | + | chr1_4:5153824-5153843 | Msa0145470:CDS | 65.0% | |
| GCCTGGCCAGCCTAAGAAGC+GGG | + | chr1_4:5153825-5153844 | Msa0145470:CDS | 65.0% | |
| CCTGGCCAGCCTAAGAAGCG+GGG | + | chr1_4:5153826-5153845 | Msa0145470:CDS | 65.0% | |
| ! | CCCCGCTTCTTAGGCTGGCC+AGG | - | chr1_4:5153829-5153848 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 5152372 | 5156373 | 5152372 | ID=Msa0145470;Name=Msa0145470 |
| chr1_4 | mRNA | 5152372 | 5156373 | 5152372 | ID=Msa0145470-mRNA-1;Parent=Msa0145470;Name=Msa0145470-mRNA-1;_AED=0.40;_eAED=0.40;_QI=119|1|1|1|1|1|3|277|275 |
| chr1_4 | exon | 5152372 | 5152595 | 5152372 | ID=Msa0145470-mRNA-1:exon:2130;Parent=Msa0145470-mRNA-1 |
| chr1_4 | exon | 5153259 | 5153922 | 5153259 | ID=Msa0145470-mRNA-1:exon:2131;Parent=Msa0145470-mRNA-1 |
| chr1_4 | exon | 5156038 | 5156373 | 5156038 | ID=Msa0145470-mRNA-1:exon:2132;Parent=Msa0145470-mRNA-1 |
| chr1_4 | five_prime_UTR | 5152372 | 5152490 | 5152372 | ID=Msa0145470-mRNA-1:five_prime_utr;Parent=Msa0145470-mRNA-1 |
| chr1_4 | CDS | 5152491 | 5152595 | 5152491 | ID=Msa0145470-mRNA-1:cds;Parent=Msa0145470-mRNA-1 |
| chr1_4 | CDS | 5153259 | 5153922 | 5153259 | ID=Msa0145470-mRNA-1:cds;Parent=Msa0145470-mRNA-1 |
| chr1_4 | CDS | 5156038 | 5156096 | 5156038 | ID=Msa0145470-mRNA-1:cds;Parent=Msa0145470-mRNA-1 |
| chr1_4 | three_prime_UTR | 5156097 | 5156373 | 5156097 | ID=Msa0145470-mRNA-1:three_prime_utr;Parent=Msa0145470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
