AlfalfaGEDB | Msa0051170

M. sativa cultivar zhongmu-4 / Msa0051170

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: PF02362.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0051170	XP_024636626.1	95.636	275	9	1	1	275	1	272	0.0	540

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0051170	sp\|Q8RYD1\|REM16_ARATH	56.452	124	52	2	8	130	11	133	2.64e-42	150

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0051170	A0A396JGK5	95.636	275	9	1	1	275	1	272	0.0	540

TFs/TRs:

Gene ID	Type	Classification
Msa0051170	TF	B3

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002380	Msa0051170	0.939432	1.284795e-99	-8.615850e-47
Msa0008410	Msa0051170	0.826917	2.084775e-54	-8.615850e-47
Msa0047980	Msa0051170	0.842780	2.097776e-58	-8.615850e-47
Msa0051170	Msa0051270	0.990324	4.269021e-182	-8.615850e-47
Msa0051170	Msa0060770	0.806585	7.659718e-50	-8.615850e-47
Msa0051170	Msa0064350	0.836267	1.034404e-56	-8.615850e-47
Msa0051170	Msa0069330	0.830069	3.613008e-55	-8.615850e-47
Msa0051170	Msa0073670	0.817221	3.690485e-52	-8.615850e-47
Msa0051170	Msa0076000	0.801390	9.211444e-49	-8.615850e-47
Msa0051170	Msa0081230	0.818705	1.704766e-52	-8.615850e-47
Msa0051170	Msa0082280	0.802220	6.221515e-49	-8.615850e-47
Msa0051170	Msa0094950	0.806006	1.014313e-49	-8.615850e-47
Msa0051170	Msa0103000	0.801814	7.539110e-49	-8.615850e-47
Msa0051170	Msa0104550	0.832315	1.013807e-55	-8.615850e-47
Msa0051170	Msa0145470	0.862099	6.440150e-64	-8.615850e-47
Msa0051170	Msa0148100	0.804243	2.371533e-49	-8.615850e-47
Msa0051170	Msa0150570	0.811355	7.296371e-51	-8.615850e-47
Msa0051170	Msa0174770	0.801386	9.228979e-49	-8.615850e-47
Msa0051170	Msa0194480	0.807879	4.074439e-50	-8.615850e-47
Msa0051170	Msa0199690	0.830529	2.789344e-55	-8.615850e-47
Msa0051170	Msa0199880	0.811194	7.907490e-51	-8.615850e-47
Msa0051170	Msa0225180	0.824949	6.117217e-54	-8.615850e-47
Msa0051170	Msa0233350	0.809973	1.451934e-50	-8.615850e-47
Msa0051170	Msa0236270	0.813560	2.405711e-51	-8.615850e-47
Msa0051170	Msa0241800	0.809615	1.733993e-50	-8.615850e-47
Msa0051170	Msa0260240	0.813194	2.896097e-51	-8.615850e-47
Msa0051170	Msa0260280	0.814440	1.539074e-51	-8.615850e-47
Msa0051170	Msa0260830	0.819819	9.505181e-53	-8.615850e-47
Msa0051170	Msa0280430	0.807964	3.906982e-50	-8.615850e-47
Msa0051170	Msa0280610	0.801993	6.926925e-49	-8.615850e-47
Msa0051170	Msa0300120	0.829639	4.600021e-55	-8.615850e-47
Msa0051170	Msa0304260	0.815125	1.084819e-51	-8.615850e-47
Msa0051170	Msa0304300	0.808845	2.534845e-50	-8.615850e-47
Msa0051170	Msa0311700	0.818452	1.945843e-52	-8.615850e-47
Msa0051170	Msa0323560	0.805756	1.144984e-49	-8.615850e-47
Msa0051170	Msa0372660	0.812383	4.359024e-51	-8.615850e-47
Msa0051170	Msa0372670	0.805598	1.235451e-49	-8.615850e-47
Msa0051170	Msa0376690	0.811655	6.279811e-51	-8.615850e-47
Msa0051170	Msa0392940	0.814778	1.295699e-51	-8.615850e-47
Msa0051170	Msa0410500	0.802968	4.360455e-49	-8.615850e-47
Msa0051170	Msa0426330	0.801199	1.007764e-48	-8.615850e-47
Msa0051170	Msa0464630	0.806921	6.503987e-50	-8.615850e-47
Msa0051170	Msa0471590	0.828701	7.764703e-55	-8.615850e-47
Msa0051170	Msa0474950	0.822160	2.747651e-53	-8.615850e-47
Msa0051170	Msa0485120	0.828279	9.820615e-55	-8.615850e-47
Msa0051170	Msa0497420	0.803654	3.145087e-49	-8.615850e-47
Msa0051170	Msa0546360	0.811964	5.380106e-51	-8.615850e-47
Msa0051170	Msa0552810	0.819026	1.441744e-52	-8.615850e-47
Msa0051170	Msa0560470	0.848038	7.903209e-60	-8.615850e-47
Msa0051170	Msa0580710	0.913745	4.307334e-84	-8.615850e-47
Msa0051170	Msa0581070	0.808290	3.330815e-50	-8.615850e-47
Msa0051170	Msa0585900	0.802862	4.585655e-49	-8.615850e-47
Msa0051170	Msa0590680	0.804356	2.247291e-49	-8.615850e-47
Msa0051170	Msa0594910	0.801382	9.243325e-49	-8.615850e-47
Msa0051170	Msa0600610	0.803237	3.836778e-49	-8.615850e-47
Msa0051170	Msa0639120	0.826272	2.971294e-54	-8.615850e-47
Msa0051170	Msa0650920	0.816915	4.322151e-52	-8.615850e-47
Msa0051170	Msa0687630	0.821181	4.627268e-53	-8.615850e-47
Msa0051170	Msa0692840	0.829001	6.569662e-55	-8.615850e-47
Msa0051170	Msa0692940	0.827674	1.372800e-54	-8.615850e-47
Msa0051170	Msa0709500	0.810539	1.095938e-50	-8.615850e-47
Msa0051170	Msa0713820	0.802346	5.860778e-49	-8.615850e-47
Msa0051170	Msa0726830	0.821892	3.170246e-53	-8.615850e-47
Msa0051170	Msa0726860	0.819861	9.300528e-53	-8.615850e-47
Msa0051170	Msa0727150	0.813449	2.545324e-51	-8.615850e-47
Msa0051170	Msa0743800	0.800966	1.124690e-48	-8.615850e-47
Msa0051170	Msa0750430	0.802915	4.473389e-49	-8.615850e-47
Msa0051170	Msa0755340	0.802135	6.477278e-49	-8.615850e-47
Msa0051170	Msa0763070	0.814491	1.499393e-51	-8.615850e-47
Msa0051170	Msa0787750	0.837320	5.573562e-57	-8.615850e-47
Msa0051170	Msa0790850	0.807491	4.924585e-50	-8.615850e-47
Msa0051170	Msa0797750	0.803097	4.101644e-49	-8.615850e-47
Msa0051170	Msa0847080	0.846682	1.863325e-59	-8.615850e-47
Msa0051170	Msa0863870	0.815305	9.894553e-52	-8.615850e-47
Msa0051170	Msa0877410	0.811478	6.862431e-51	-8.615850e-47
Msa0051170	Msa0900630	0.841369	4.954059e-58	-8.615850e-47
Msa0051170	Msa0905550	0.802704	4.944105e-49	-8.615850e-47
Msa0051170	Msa0923330	0.802416	5.668406e-49	-8.615850e-47
Msa0051170	Msa0926460	0.827476	1.531861e-54	-8.615850e-47
Msa0051170	Msa0931950	0.806920	6.508211e-50	-8.615850e-47
Msa0051170	Msa0937550	0.801049	1.081428e-48	-8.615850e-47
Msa0051170	Msa0965860	0.815728	7.967024e-52	-8.615850e-47
Msa0051170	Msa0967370	0.820549	6.469007e-53	-8.615850e-47
Msa0051170	Msa0969340	0.800113	1.678312e-48	-8.615850e-47
Msa0051170	Msa0976310	0.817855	2.655905e-52	-8.615850e-47
Msa0051170	Msa1000690	0.830693	2.542944e-55	-8.615850e-47
Msa0051170	Msa1013040	0.802095	6.599223e-49	-8.615850e-47
Msa0051170	Msa1041530	0.811994	5.299042e-51	-8.615850e-47
Msa0051170	Msa1091530	0.819381	1.196786e-52	-8.615850e-47
Msa0051170	Msa1100720	0.813728	2.210291e-51	-8.615850e-47
Msa0051170	Msa1119200	0.804141	2.490287e-49	-8.615850e-47
Msa0051170	Msa1123880	0.800063	1.717667e-48	-8.615850e-47
Msa0051170	Msa1125760	0.811271	7.611689e-51	-8.615850e-47
Msa0051170	Msa1126510	0.822764	1.989318e-53	-8.615850e-47
Msa0051170	Msa1126770	0.818326	2.077756e-52	-8.615850e-47
Msa0051170	Msa1127890	0.800171	1.633389e-48	-8.615850e-47
Msa0051170	Msa1134110	0.813049	3.116049e-51	-8.615850e-47
Msa0051170	Msa1165870	0.811508	6.760495e-51	-8.615850e-47
Msa0051170	Msa1166860	0.802908	4.487751e-49	-8.615850e-47
Msa0051170	Msa1171360	0.810887	9.216742e-51	-8.615850e-47
Msa0051170	Msa1184370	0.801523	8.648884e-49	-8.615850e-47
Msa0051170	Msa1201830	0.800652	1.303291e-48	-8.615850e-47
Msa0051170	Msa1217660	0.806974	6.338479e-50	-8.615850e-47
Msa0051170	Msa1235630	0.815028	1.140196e-51	-8.615850e-47
Msa0051170	Msa1252740	0.804436	2.161890e-49	-8.615850e-47
Msa0051170	Msa1283170	0.803175	3.951773e-49	-8.615850e-47
Msa0051170	Msa1304820	0.811253	7.678152e-51	-8.615850e-47
Msa0051170	Msa1305710	0.803763	2.985012e-49	-8.615850e-47
Msa0051170	Msa1307950	0.827691	1.360418e-54	-8.615850e-47
Msa0051170	Msa1315870	0.816841	4.490969e-52	-8.615850e-47
Msa0051170	Msa1316830	0.809001	2.347308e-50	-8.615850e-47
Msa0051170	Msa1320740	0.824576	7.490055e-54	-8.615850e-47
Msa0051170	Msa1340020	0.805931	1.051943e-49	-8.615850e-47
Msa0051170	Msa1344850	0.803699	3.078052e-49	-8.615850e-47
Msa0051170	Msa1358430	0.801543	8.567991e-49	-8.615850e-47
Msa0051170	Msa1365150	0.810678	1.023032e-50	-8.615850e-47
Msa0051170	Msa1367590	0.808024	3.795233e-50	-8.615850e-47
Msa0051170	Msa1367880	0.812791	3.548671e-51	-8.615850e-47
Msa0051170	Msa1368210	0.803534	3.329688e-49	-8.615850e-47
Msa0051170	Msa1370860	0.808092	3.670734e-50	-8.615850e-47
Msa0051170	Msa1397940	0.812467	4.179090e-51	-8.615850e-47
Msa0051170	Msa1403800	0.800635	1.314096e-48	-8.615850e-47
Msa0051170	Msa1404190	0.818351	2.050906e-52	-8.615850e-47
Msa0051170	Msa1416390	0.824505	7.782107e-54	-8.615850e-47
Msa0051170	Msa1431040	0.817487	3.215144e-52	-8.615850e-47
Msa0051170	Msa1461280	0.806378	8.469740e-50	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0051170	MtrunA17_Chr1g0154241	95.636	275	9	1	1	275	1	272	0.0	540
Msa0051170	MtrunA17_Chr1g0154211	64.794	267	85	3	5	268	6	266	3.51e-118	344
Msa0051170	MtrunA17_Chr1g0154101	62.626	297	63	5	6	256	168	462	4.08e-114	347
Msa0051170	MtrunA17_Chr1g0154101	76.101	159	37	1	2	159	5	163	1.68e-81	261
Msa0051170	MtrunA17_Chr1g0154251	64.368	261	79	5	2	249	7	266	3.29e-110	327
Msa0051170	MtrunA17_Chr1g0154111	60.741	270	76	5	5	272	9	250	2.79e-101	307
Msa0051170	MtrunA17_Chr1g0154111	56.710	231	65	8	36	257	368	572	2.83e-68	222
Msa0051170	MtrunA17_Chr1g0154191	61.686	261	56	6	1	256	1	222	5.76e-98	291
Msa0051170	MtrunA17_Chr1g0154171	59.922	257	62	5	5	258	6	224	6.16e-90	271
Msa0051170	MtrunA17_Chr1g0154131	54.753	263	55	6	2	263	164	363	6.06e-82	254
Msa0051170	MtrunA17_Chr1g0154131	74.684	158	40	0	3	160	7	164	7.94e-81	251
Msa0051170	MtrunA17_Chr1g0154161	75.000	152	35	2	5	155	13	162	1.13e-74	231
Msa0051170	MtrunA17_Chr1g0154151	55.085	236	56	6	36	268	19	207	8.89e-73	226
Msa0051170	MtrunA17_Chr1g0154071	74.046	131	34	0	6	136	12	142	2.59e-65	211
Msa0051170	MtrunA17_Chr1g0154071	66.667	147	48	1	10	156	145	290	2.75e-62	204
Msa0051170	MtrunA17_Chr1g0154041	36.275	102	64	1	21	122	15	115	3.25e-16	78.2
Msa0051170	MtrunA17_Chr3g0131891	34.021	97	63	1	20	115	17	113	1.19e-13	70.1
Msa0051170	MtrunA17_Chr7g0233561	35.106	94	61	0	22	115	19	112	3.17e-13	68.6
Msa0051170	MtrunA17_Chr7g0233571	34.375	96	62	1	21	115	9	104	1.08e-12	65.9
Msa0051170	MtrunA17_Chr7g0233531	37.975	79	49	0	37	115	2	80	7.86e-12	64.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0051170	AT4G33280.2	56.452	124	52	2	8	130	11	133	9.71e-44	150
Msa0051170	AT4G33280.1	56.452	124	52	2	8	130	11	133	2.68e-43	150
Msa0051170	AT4G33280.3	56.452	124	52	2	8	130	11	133	6.99e-43	151
Msa0051170	AT4G34400.2	37.113	97	60	1	22	118	17	112	2.10e-17	81.6
Msa0051170	AT4G34400.1	37.113	97	60	1	22	118	17	112	2.10e-17	81.6
Msa0051170	AT3G18990.1	34.951	103	58	1	32	125	17	119	1.09e-13	70.5
Msa0051170	AT3G18990.2	34.951	103	58	1	32	125	17	119	1.18e-13	70.5
Msa0051170	AT3G06220.1	32.584	89	59	1	22	110	11	98	1.65e-13	67.4
Msa0051170	AT3G06160.1	34.831	89	57	1	22	110	26	113	5.69e-13	68.6
Msa0051170	AT3G06160.5	34.831	89	57	1	22	110	11	98	8.10e-13	67.8
Msa0051170	AT3G06160.4	34.831	89	57	1	22	110	11	98	8.10e-13	67.8
Msa0051170	AT3G06160.3	34.831	89	57	1	22	110	11	98	8.10e-13	67.8
Msa0051170	AT3G06160.2	34.831	89	57	1	22	110	70	157	9.89e-13	67.8
Msa0051170	AT5G66980.1	41.463	82	44	1	33	110	21	102	1.60e-12	67.0
Msa0051170	AT5G60130.5	38.202	89	50	2	35	118	27	115	6.88e-12	64.3
Msa0051170	AT5G60130.3	38.202	89	50	2	35	118	1	89	1.35e-11	63.9
Msa0051170	AT5G60130.4	38.202	89	50	2	35	118	24	112	1.88e-11	63.9
Msa0051170	AT5G60130.1	38.202	89	50	2	35	118	27	115	2.00e-11	63.9
Msa0051170	AT5G60130.2	38.202	89	50	2	35	118	27	115	2.22e-11	63.5

Find 79 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAACTCCACTAGGACCTTTA+AGG	0.183323	1_2:+5269807	None:intergenic
CCTGAAAATGTGAACCTTAA+AGG	0.211774	1_2:-5269821	Msa0051170:CDS
TGAAATGGATGAACTGAAAA+TGG	0.224125	1_2:+5270588	None:intergenic
TTTGTCTCTCTGTTTCAAAA+TGG	0.253518	1_2:-5270651	Msa0051170:exon
GCTGGTCTTCCCCGCTTCTT+AGG	0.270434	1_2:+5269287	None:intergenic
AGTGGAGTTGTGTGGAATAT+AGG	0.300231	1_2:-5269794	Msa0051170:CDS
AACAATATATTGCCTAGTTA+AGG	0.302218	1_2:-5266766	Msa0051170:three_prime_UTR
AGGAGTTTGACACCATTTCT+AGG	0.335680	1_2:+5266822	None:intergenic
CATGGGAGGAAGACATTTAC+TGG	0.340818	1_2:-5270613	Msa0051170:CDS
AACTTCGTTAACAGGCTTCT+TGG	0.341598	1_2:+5269322	None:intergenic
CCAGGCGTAACTTCGTTAAC+AGG	0.352395	1_2:+5269314	None:intergenic
GTCTTCCCCGCTTCTTAGGC+TGG	0.353235	1_2:+5269291	None:intergenic
TTATGTTCCTTCAGAATAGA+AGG	0.360823	1_2:-5266998	Msa0051170:three_prime_UTR
AATGCGGTTCTGAGAAATTT+CGG	0.363117	1_2:-5269496	Msa0051170:CDS
CCCCGCTTCTTAGGCTGGCC+AGG	0.381562	1_2:+5269296	None:intergenic
CCAGCAAAATCAGCTACTTC+TGG	0.385623	1_2:-5269269	Msa0051170:CDS
TTGTCTCTCTGTTTCAAAAT+GGG	0.414043	1_2:-5270650	Msa0051170:exon
TCAATGCTCTCGAGTCTTGA+TGG	0.415924	1_2:-5266882	Msa0051170:three_prime_UTR
ACAATATATTGCCTAGTTAA+GGG	0.416180	1_2:-5266765	Msa0051170:three_prime_UTR
GGTGGAAGCTGACTTTGTTT+CGG	0.419026	1_2:-5267029	Msa0051170:exon
GTGGAGTTGTGTGGAATATA+GGG	0.421556	1_2:-5269793	Msa0051170:CDS
TTTGTTAGAAAATGTGGAAA+AGG	0.421612	1_2:-5269602	Msa0051170:CDS
GCATCAGCCATGACCTGCTC+AGG	0.424246	1_2:+5269386	None:intergenic
TGAGTCTGCTTCCCCTGAGC+AGG	0.449413	1_2:-5269399	Msa0051170:CDS
GCGAGAAAGCAATTGTTGAT+TGG	0.450466	1_2:-5269247	Msa0051170:CDS
TGGGAAGTGTGAACCGATCA+TGG	0.456499	1_2:-5270631	Msa0051170:CDS
TGCTTCCCCTGAGCAGGTCA+TGG	0.458901	1_2:-5269393	Msa0051170:CDS
ACAAAGAAATGGTTCAAAGT+TGG	0.458957	1_2:+5270669	None:intergenic
GAAGTCAACACTGCTTCTAA+TGG	0.464985	1_2:-5269527	Msa0051170:CDS
GCCTGGCCAGCCTAAGAAGC+GGG	0.466869	1_2:-5269297	Msa0051170:CDS
TATATCACATAAACTATTTG+AGG	0.467509	1_2:+5266802	None:intergenic
TGCGAAGAAATTGAGTGAAA+TGG	0.470492	1_2:+5270573	None:intergenic
GAAACAGAGAGACAAAGAAA+TGG	0.473247	1_2:+5270658	None:intergenic
AGAGCCTGCTTTCTCGCATA+AGG	0.473371	1_2:+5269628	None:intergenic
CCAACCGTTTGTGAAGTAAA+CGG	0.478109	1_2:+5269751	None:intergenic
CGAGAAAGCAATTGTTGATT+GGG	0.485091	1_2:-5269246	Msa0051170:CDS
GCGGTTCCCTCCCAAACAAC+CGG	0.485847	1_2:-5269353	Msa0051170:CDS
TCTTACTTTGTTAGAAAATG+TGG	0.486876	1_2:-5269608	Msa0051170:CDS
CATGGACAAACTCCTAGAAA+TGG	0.504917	1_2:-5266834	Msa0051170:three_prime_UTR
GACACCGTTTACTTCACAAA+CGG	0.514012	1_2:-5269755	Msa0051170:CDS
TACTTCACAAACGGTTGGCA+AGG	0.517034	1_2:-5269746	Msa0051170:CDS
CACATAATCAACCCTTAACT+AGG	0.517999	1_2:+5266754	None:intergenic
CAATGCTCTCGAGTCTTGAT+GGG	0.526601	1_2:-5266881	Msa0051170:three_prime_UTR
AATAAAAGAACGGAACAGAA+AGG	0.528722	1_2:+5270736	None:intergenic
CCTGTTAACGAAGTTACGCC+TGG	0.535294	1_2:-5269314	Msa0051170:CDS
GAAATGGATGAACTGAAAAT+GGG	0.537991	1_2:+5270589	None:intergenic
AACATAACCTTCTATTCTGA+AGG	0.545583	1_2:+5266991	None:intergenic
AATGAAAAGACTTCTAATGC+TGG	0.546042	1_2:-5269425	Msa0051170:CDS
ATTTCTTAGTAGTAGATGCA+TGG	0.551338	1_2:-5266852	Msa0051170:three_prime_UTR
CCGTTTACTTCACAAACGGT+TGG	0.558722	1_2:-5269751	Msa0051170:CDS
AGGCAATATATTGTTCTCAA+AGG	0.561581	1_2:+5266774	None:intergenic
ATAAAAGAACGGAACAGAAA+GGG	0.562420	1_2:+5270737	None:intergenic
CATCAGCCATGACCTGCTCA+GGG	0.563227	1_2:+5269387	None:intergenic
CGCCTGGCCAGCCTAAGAAG+CGG	0.563693	1_2:-5269298	Msa0051170:CDS
GAAAGCAATTGTTGATTGGG+TGG	0.568458	1_2:-5269243	Msa0051170:CDS
AAATGTCTTCCTCCCATGAT+CGG	0.572099	1_2:+5270618	None:intergenic
CGTGAAGATCGTGAAATTGA+AGG	0.574504	1_2:-5267050	Msa0051170:CDS
ATATTCCACACAACTCCACT+AGG	0.578077	1_2:+5269797	None:intergenic
GATAGCACAAACTATTCTGA+AGG	0.583811	1_2:+5266928	None:intergenic
TGCTCTCGAGTCTTGATGGG+TGG	0.586623	1_2:-5266878	Msa0051170:three_prime_UTR
GAGACCTTATGCGAGAAAGC+AGG	0.587625	1_2:-5269632	Msa0051170:CDS
GCAAGAGGGCGACAAGGCAA+AGG	0.587651	1_2:-5269570	Msa0051170:CDS
GGGAAGTGTGAACCGATCAT+GGG	0.593667	1_2:-5270630	Msa0051170:CDS
GGCTGATGCAGTCACTATTG+CGG	0.596142	1_2:-5269372	Msa0051170:CDS
TACTGAGCAAGAGGGCGACA+AGG	0.599125	1_2:-5269576	Msa0051170:CDS
GAACGGAACAGAAAGGGTAC+AGG	0.599703	1_2:+5270743	None:intergenic
GTGAACCTTAAAGGTCCTAG+TGG	0.609317	1_2:-5269812	Msa0051170:CDS
AAAAGGTCATACTGAGCAAG+AGG	0.615156	1_2:-5269585	Msa0051170:CDS
AAGGTCCTAGTGGAGTTGTG+TGG	0.624686	1_2:-5269802	Msa0051170:CDS
GCTTGTAGCAAGGAAAACTC+AGG	0.631925	1_2:-5269221	Msa0051170:intron
TGTTACAGTCAATAAAAGAA+CGG	0.638014	1_2:+5270726	None:intergenic
CCTGGCCAGCCTAAGAAGCG+GGG	0.640983	1_2:-5269296	Msa0051170:CDS
GTCAACACTGCTTCTAATGG+CGG	0.645750	1_2:-5269524	Msa0051170:CDS
AAGTGTGAACCGATCATGGG+AGG	0.649028	1_2:-5270627	Msa0051170:CDS
TGATTGGGTGGCTTGTAGCA+AGG	0.654638	1_2:-5269231	Msa0051170:CDS
GAAGATCGTGAAATTGAAGG+TGG	0.655920	1_2:-5267047	Msa0051170:CDS
TCTAATGGCGGTGTTGAATG+CGG	0.661026	1_2:-5269512	Msa0051170:CDS
AAAGGTCATACTGAGCAAGA+GGG	0.680883	1_2:-5269584	Msa0051170:CDS
ATCAGCCATGACCTGCTCAG+GGG	0.726483	1_2:+5269388	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AGATACAAAAATTAAAAAGT+GGG	+	chr1_2:5267129-5267148	None:intergenic	15.0%
!!	AAGATACAAAAATTAAAAAG+TGG	+	chr1_2:5267130-5267149	None:intergenic	15.0%
!!	GTATATAAATATAATAAGCA+TGG	+	chr1_2:5267244-5267263	None:intergenic	15.0%
!!!	TGATTTTCTCAAATTATTAA+TGG	+	chr1_2:5267335-5267354	None:intergenic	15.0%
!!	TTCAATGTAATTATATGTAT+TGG	-	chr1_2:5267368-5267387	Msa0051170:intron	15.0%
!!!	TTTGAAGTTTTAATATTTCA+TGG	-	chr1_2:5267860-5267879	Msa0051170:intron	15.0%
!!!	ATTTTGACAACAAAAAAAAA+AGG	+	chr1_2:5268670-5268689	None:intergenic	15.0%
!!	AAAAAAAAAAAATGCAAACA+TGG	-	chr1_2:5270331-5270350	Msa0051170:intron	15.0%
!!!	AAATTGTCTGAAAATGTTTT+AGG	+	chr1_2:5267662-5267681	None:intergenic	20.0%
!!!	ATGTATCAACTTAATTTTGA+GGG	-	chr1_2:5268764-5268783	Msa0051170:intron	20.0%
!!!	TATTTTAATGATGGTCAAAA+AGG	+	chr1_2:5268966-5268985	None:intergenic	20.0%
!!	CAAAACATATAGAAATTGAT+CGG	+	chr1_2:5269230-5269249	None:intergenic	20.0%
!!	TATATCACATAAACTATTTG+AGG	+	chr1_2:5270717-5270736	None:intergenic	20.0%
!	TGTTACAGTCAATAAAAGAA+CGG	+	chr1_2:5266793-5266812	None:intergenic	25.0%
!!	TTTTTGTGTTATCAAAGGAA+AGG	+	chr1_2:5266823-5266842	None:intergenic	25.0%
!	AATATGAACACTTAAGAACA+TGG	+	chr1_2:5267021-5267040	None:intergenic	25.0%
!	TGTGTATATAATATGAAGCA+CGG	-	chr1_2:5267279-5267298	Msa0051170:intron	25.0%
!	TAGTGTATATATAATGGCTT+GGG	-	chr1_2:5267464-5267483	Msa0051170:intron	25.0%
!	TGGATTAAAGAAAGTGAATA+AGG	-	chr1_2:5267558-5267577	Msa0051170:intron	25.0%
!	ATGTTGATACATTTATTTGC+AGG	-	chr1_2:5267631-5267650	Msa0051170:intron	25.0%
!	TCTTACTTTGTTAGAAAATG+TGG	-	chr1_2:5267908-5267927	Msa0051170:intron	25.0%
!	TTTGTTAGAAAATGTGGAAA+AGG	-	chr1_2:5267914-5267933	Msa0051170:intron	25.0%
!!	TTTTCATTGGTATTTTCGAA+AGG	+	chr1_2:5268079-5268098	None:intergenic	25.0%
!!	TTGTTTTCCGGTTTTTATAT+TGG	-	chr1_2:5268481-5268500	Msa0051170:intron	25.0%
!	CTTATGACCAATATAAAAAC+CGG	+	chr1_2:5268491-5268510	None:intergenic	25.0%
!!	TTTTATATTGGTCATAAGCA+TGG	-	chr1_2:5268493-5268512	Msa0051170:intron	25.0%
!	TTGAATCATGAATTCTTATG+AGG	-	chr1_2:5268731-5268750	Msa0051170:intron	25.0%
!!	GATGTATCAACTTAATTTTG+AGG	-	chr1_2:5268763-5268782	Msa0051170:intron	25.0%
!!!	GAATGCTAGTATTTTAATGA+TGG	+	chr1_2:5268975-5268994	None:intergenic	25.0%
!	AGCATTCCATTTCTAATTAT+TGG	-	chr1_2:5268988-5269007	Msa0051170:intron	25.0%
!	GAGAAACCAATAATTAGAAA+TGG	+	chr1_2:5268997-5269016	None:intergenic	25.0%
!	TGAGAATAAATTTAGACCTA+TGG	+	chr1_2:5269390-5269409	None:intergenic	25.0%
!	TTGATTTATTTGGTACACAT+AGG	+	chr1_2:5269698-5269717	None:intergenic	25.0%
!!	AGCATTTATTGATGGTTAAA+AGG	+	chr1_2:5269863-5269882	None:intergenic	25.0%
!!	TTCTCTTTAATTTCATGCTT+CGG	-	chr1_2:5269907-5269926	Msa0051170:intron	25.0%
!!	ATAAGATTTGATTCGTGATT+CGG	-	chr1_2:5269980-5269999	Msa0051170:intron	25.0%
!	AGGTAACAAAAATTTGGAAA+AGG	+	chr1_2:5270129-5270148	None:intergenic	25.0%
!	ATTGGTAGGTAACAAAAATT+TGG	+	chr1_2:5270135-5270154	None:intergenic	25.0%
!	TGAGGAATGAAGAAAAAAAA+TGG	+	chr1_2:5270411-5270430	None:intergenic	25.0%
!	TGTGAAAAAAAAAAGAGAGA+AGG	-	chr1_2:5270552-5270571	Msa0051170:CDS	25.0%
!	AACAATATATTGCCTAGTTA+AGG	-	chr1_2:5270750-5270769	Msa0051170:five_prime_UTR	25.0%
	ATAAAAGAACGGAACAGAAA+GGG	+	chr1_2:5266782-5266801	None:intergenic	30.0%
	AATAAAAGAACGGAACAGAA+AGG	+	chr1_2:5266783-5266802	None:intergenic	30.0%
!	GAAGCTTTTTGTGTTATCAA+AGG	+	chr1_2:5266828-5266847	None:intergenic	30.0%
	ACAAAGAAATGGTTCAAAGT+TGG	+	chr1_2:5266850-5266869	None:intergenic	30.0%
	TTTGTCTCTCTGTTTCAAAA+TGG	-	chr1_2:5266865-5266884	Msa0051170:three_prime_UTR	30.0%
	TTGTCTCTCTGTTTCAAAAT+GGG	-	chr1_2:5266866-5266885	Msa0051170:three_prime_UTR	30.0%
	GAAATGGATGAACTGAAAAT+GGG	+	chr1_2:5266930-5266949	None:intergenic	30.0%
	TGAAATGGATGAACTGAAAA+TGG	+	chr1_2:5266931-5266950	None:intergenic	30.0%
	TATATATACACTACGAAGCA+AGG	+	chr1_2:5267457-5267476	None:intergenic	30.0%
	GCTTCGTAGTGTATATATAA+TGG	-	chr1_2:5267458-5267477	Msa0051170:intron	30.0%
	GTAGTGTATATATAATGGCT+TGG	-	chr1_2:5267463-5267482	Msa0051170:intron	30.0%
!!!	CTTTTGAGACAATATGTTCA+TGG	-	chr1_2:5267512-5267531	Msa0051170:intron	30.0%
!!!	CTCCTTTTTTTCAAGTACAA+TGG	-	chr1_2:5267827-5267846	Msa0051170:intron	30.0%
!	AGCATTAGAAGTCTTTTCAT+TGG	+	chr1_2:5268092-5268111	None:intergenic	30.0%
	AATGAAAAGACTTCTAATGC+TGG	-	chr1_2:5268091-5268110	Msa0051170:intron	30.0%
	ATAAAAACCGGAAAACAAAC+TGG	+	chr1_2:5268479-5268498	None:intergenic	30.0%
!	TTCAGTTTAGAATCGAATCA+AGG	+	chr1_2:5268551-5268570	None:intergenic	30.0%
	TGACAACAAAAAAAAAAGGC+TGG	+	chr1_2:5268666-5268685	None:intergenic	30.0%
	ATCAAATGACAAAAGAAACG+TGG	+	chr1_2:5268704-5268723	None:intergenic	30.0%
!!	TTTCTTGCTTCTGTTATTTC+TGG	-	chr1_2:5269022-5269041	Msa0051170:intron	30.0%
	ATTAAAGAAGAGTTGGACAA+TGG	+	chr1_2:5269201-5269220	None:intergenic	30.0%
	GATTTGAAGATACAATGTGA+AGG	+	chr1_2:5269323-5269342	None:intergenic	30.0%
!	TAGCAACTCAATTTTTGCAT+AGG	-	chr1_2:5269450-5269469	Msa0051170:CDS	30.0%
!	TACATTGATGTTGATTATGC+AGG	+	chr1_2:5269518-5269537	None:intergenic	30.0%
	AGAGGACTCTTATCTAAATT+AGG	+	chr1_2:5269563-5269582	None:intergenic	30.0%
	ATGGTGAGTCAATTCATTAA+TGG	+	chr1_2:5269650-5269669	None:intergenic	30.0%
!	CACATTCCATTTGCAATTTT+TGG	-	chr1_2:5269883-5269902	Msa0051170:intron	30.0%
	GAGAAACCAAAAATTGCAAA+TGG	+	chr1_2:5269892-5269911	None:intergenic	30.0%
	ATGCCTTATCTTACATTGAA+TGG	-	chr1_2:5270286-5270305	Msa0051170:intron	30.0%
	TGCCTTATCTTACATTGAAT+GGG	-	chr1_2:5270287-5270306	Msa0051170:intron	30.0%
	TCTTCATTCCTCATAATTTC+AGG	-	chr1_2:5270418-5270437	Msa0051170:intron	30.0%
	CTTCATTCCTCATAATTTCA+GGG	-	chr1_2:5270419-5270438	Msa0051170:intron	30.0%
	TTATGTTCCTTCAGAATAGA+AGG	-	chr1_2:5270518-5270537	Msa0051170:intron	30.0%
	AACATAACCTTCTATTCTGA+AGG	+	chr1_2:5270528-5270547	None:intergenic	30.0%
	ATTTCTTAGTAGTAGATGCA+TGG	-	chr1_2:5270664-5270683	Msa0051170:five_prime_UTR	30.0%
	AGGCAATATATTGTTCTCAA+AGG	+	chr1_2:5270745-5270764	None:intergenic	30.0%
	GAAACAGAGAGACAAAGAAA+TGG	+	chr1_2:5266861-5266880	None:intergenic	35.0%
	TGCGAAGAAATTGAGTGAAA+TGG	+	chr1_2:5266946-5266965	None:intergenic	35.0%
	TGGAAGGAAAGAAGAATGAA+GGG	+	chr1_2:5267001-5267020	None:intergenic	35.0%
	ATGGAAGGAAAGAAGAATGA+AGG	+	chr1_2:5267002-5267021	None:intergenic	35.0%
	TGAACACTTAAGAACATGGA+AGG	+	chr1_2:5267017-5267036	None:intergenic	35.0%
	TATAATATGAAGCACGGACA+CGG	-	chr1_2:5267285-5267304	Msa0051170:intron	35.0%
!!!	CCTTTAAGGTTCACATTTTC+AGG	+	chr1_2:5267698-5267717	None:intergenic	35.0%
	CCTGAAAATGTGAACCTTAA+AGG	-	chr1_2:5267695-5267714	Msa0051170:intron	35.0%
	CGCCATTGTACTTGAAAAAA+AGG	+	chr1_2:5267832-5267851	None:intergenic	35.0%
!!	AATGCGGTTCTGAGAAATTT+CGG	-	chr1_2:5268020-5268039	Msa0051170:intron	35.0%
!!	TTTTCGAAAGGTACAGCTAA+TGG	+	chr1_2:5268067-5268086	None:intergenic	35.0%
!	CGAGAAAGCAATTGTTGATT+GGG	-	chr1_2:5268270-5268289	Msa0051170:intron	35.0%
	ACTAGAGATTCGTATCAACT+GGG	+	chr1_2:5268574-5268593	None:intergenic	35.0%
	AATGACAAAAGAAACGTGGT+TGG	+	chr1_2:5268700-5268719	None:intergenic	35.0%
	GGGTTTCCTTTCAACTAATT+CGG	+	chr1_2:5269071-5269090	None:intergenic	35.0%
!!	TTAGCAGAAGTGTTGGTAAA+GGG	+	chr1_2:5269144-5269163	None:intergenic	35.0%
!!	ATTAGCAGAAGTGTTGGTAA+AGG	+	chr1_2:5269145-5269164	None:intergenic	35.0%
	GCACTTCATTAAAGAAGAGT+TGG	+	chr1_2:5269208-5269227	None:intergenic	35.0%
	ATAATCCTATTCAGCATGAC+AGG	+	chr1_2:5269254-5269273	None:intergenic	35.0%
	ATCATACAACACAGCTTCAT+TGG	-	chr1_2:5269296-5269315	Msa0051170:CDS	35.0%
	AAATTTAGACCTATGGCACA+AGG	+	chr1_2:5269383-5269402	None:intergenic	35.0%
!	GAGTAAGAAGCATAGTTTAG+TGG	+	chr1_2:5269426-5269445	None:intergenic	35.0%
!	GCAAAAATTGAGTTGCTAGA+AGG	+	chr1_2:5269448-5269467	None:intergenic	35.0%
	ATTAGGAGGAAGACTAACTA+TGG	+	chr1_2:5269546-5269565	None:intergenic	35.0%
	GGACTCTTATCTAAATTAGG+AGG	+	chr1_2:5269560-5269579	None:intergenic	35.0%
	TCAATTCATTAATGGTCCGA+GGG	+	chr1_2:5269642-5269661	None:intergenic	35.0%
!	AGGGGGGAAATTGATTTATT+TGG	+	chr1_2:5269708-5269727	None:intergenic	35.0%
	TCAAAGCTTGTCTTGTGATT+GGG	-	chr1_2:5269758-5269777	Msa0051170:CDS	35.0%
	GGTTAAAAGGATATGCAGAA+GGG	+	chr1_2:5269850-5269869	None:intergenic	35.0%
	TGGTTAAAAGGATATGCAGA+AGG	+	chr1_2:5269851-5269870	None:intergenic	35.0%
	GGAATGTGAGCATTTATTGA+TGG	+	chr1_2:5269871-5269890	None:intergenic	35.0%
!	TTTCATGCTTCGGTTATTTC+TGG	-	chr1_2:5269917-5269936	Msa0051170:intron	35.0%
!	TGATTCGTGATTCGGAAAAT+AGG	-	chr1_2:5269988-5270007	Msa0051170:intron	35.0%
!!	GAATATCGATTTGATAACCC+TGG	-	chr1_2:5270029-5270048	Msa0051170:intron	35.0%
	GTTACCTACCAATATGTTGA+TGG	-	chr1_2:5270142-5270161	Msa0051170:intron	35.0%
	TCTGTTTCATACCTGGATAA+GGG	+	chr1_2:5270172-5270191	None:intergenic	35.0%
	ATCTGTTTCATACCTGGATA+AGG	+	chr1_2:5270173-5270192	None:intergenic	35.0%
	GCCTTATCTTACATTGAATG+GGG	-	chr1_2:5270288-5270307	Msa0051170:intron	35.0%
	TCCCCATTCAATGTAAGATA+AGG	+	chr1_2:5270292-5270311	None:intergenic	35.0%
	GATAGCACAAACTATTCTGA+AGG	+	chr1_2:5270591-5270610	None:intergenic	35.0%
	AAATGTCTTCCTCCCATGAT+CGG	+	chr1_2:5266901-5266920	None:intergenic	40.0%
	ATCCACAAAACCATGCTTGA+TGG	+	chr1_2:5267543-5267562	None:intergenic	40.0%
	ATATTCCACACAACTCCACT+AGG	+	chr1_2:5267722-5267741	None:intergenic	40.0%
	AGTGGAGTTGTGTGGAATAT+AGG	-	chr1_2:5267722-5267741	Msa0051170:intron	40.0%
	GTGGAGTTGTGTGGAATATA+GGG	-	chr1_2:5267723-5267742	Msa0051170:intron	40.0%
	GACACCGTTTACTTCACAAA+CGG	-	chr1_2:5267761-5267780	Msa0051170:intron	40.0%
	CCAACCGTTTGTGAAGTAAA+CGG	+	chr1_2:5267768-5267787	None:intergenic	40.0%
	AAAAGGTCATACTGAGCAAG+AGG	-	chr1_2:5267931-5267950	Msa0051170:intron	40.0%
	AAAGGTCATACTGAGCAAGA+GGG	-	chr1_2:5267932-5267951	Msa0051170:intron	40.0%
	GAAGTCAACACTGCTTCTAA+TGG	-	chr1_2:5267989-5268008	Msa0051170:intron	40.0%
	AACTTCGTTAACAGGCTTCT+TGG	+	chr1_2:5268197-5268216	None:intergenic	40.0%
	GCGAGAAAGCAATTGTTGAT+TGG	-	chr1_2:5268269-5268288	Msa0051170:intron	40.0%
!	GAAAGCAATTGTTGATTGGG+TGG	-	chr1_2:5268273-5268292	Msa0051170:intron	40.0%
!!	GTCCTAACCAGTTTGTTTTC+CGG	-	chr1_2:5268469-5268488	Msa0051170:intron	40.0%
	AACCGGAAAACAAACTGGTT+AGG	+	chr1_2:5268474-5268493	None:intergenic	40.0%
	CACTAGAGATTCGTATCAAC+TGG	+	chr1_2:5268575-5268594	None:intergenic	40.0%
!!!	TACTCAAAGTTTTGGTAGCG+TGG	+	chr1_2:5268638-5268657	None:intergenic	40.0%
!	TGGTTCGCTACTCAAAGTTT+TGG	+	chr1_2:5268646-5268665	None:intergenic	40.0%
!	GGATTCGGTTAATATGAGGT+GGG	-	chr1_2:5268813-5268832	Msa0051170:intron	40.0%
	TTAATATGAGGTGGGAGTTG+TGG	-	chr1_2:5268821-5268840	Msa0051170:intron	40.0%
	TTCCTTTCAACTAATTCGGC+AGG	+	chr1_2:5269067-5269086	None:intergenic	40.0%
	AAACGATTCGACCAACTTAC+TGG	+	chr1_2:5269111-5269130	None:intergenic	40.0%
!	AGTTGGTCGAATCGTTTTGA+TGG	-	chr1_2:5269114-5269133	Msa0051170:intron	40.0%
!	GCATCAATTAGCAGAAGTGT+TGG	+	chr1_2:5269151-5269170	None:intergenic	40.0%
	TTTGTCCTGTCATGCTGAAT+AGG	-	chr1_2:5269246-5269265	Msa0051170:CDS	40.0%
	TCAGTACCATCTTCATCCAT+AGG	-	chr1_2:5269345-5269364	Msa0051170:CDS	40.0%
	AAGGAATATGTGAGCTCCTA+TGG	+	chr1_2:5269364-5269383	None:intergenic	40.0%
	TCACATATTCCTTGTGCCAT+AGG	-	chr1_2:5269371-5269390	Msa0051170:CDS	40.0%
	TGATTATGCAGGTTCAGTGA+GGG	+	chr1_2:5269507-5269526	None:intergenic	40.0%
	TTGATTATGCAGGTTCAGTG+AGG	+	chr1_2:5269508-5269527	None:intergenic	40.0%
	GTCAATTCATTAATGGTCCG+AGG	+	chr1_2:5269643-5269662	None:intergenic	40.0%
!!	TTTGGCTTGTGCAGTTAGTA+TGG	+	chr1_2:5269669-5269688	None:intergenic	40.0%
	AAAATTGGCAAGCTACTAGG+GGG	+	chr1_2:5269725-5269744	None:intergenic	40.0%
	CAAAATTGGCAAGCTACTAG+GGG	+	chr1_2:5269726-5269745	None:intergenic	40.0%
	CCAAAATTGGCAAGCTACTA+GGG	+	chr1_2:5269727-5269746	None:intergenic	40.0%
	CAATCACAAGACAAGCTTTG+AGG	+	chr1_2:5269759-5269778	None:intergenic	40.0%
	CTCAAAGCTTGTCTTGTGAT+TGG	-	chr1_2:5269757-5269776	Msa0051170:CDS	40.0%
!!	TGTGTAGAGCATTGCTCTTT+GGG	-	chr1_2:5269810-5269829	Msa0051170:CDS	40.0%
	CCTTCCATCAACATATTGGT+AGG	+	chr1_2:5270149-5270168	None:intergenic	40.0%
!	CCTACCAATATGTTGATGGA+AGG	-	chr1_2:5270146-5270165	Msa0051170:intron	40.0%
	CGTCAAATCTGTTTCATACC+TGG	+	chr1_2:5270179-5270198	None:intergenic	40.0%
	GTATGAAACAGATTTGACGC+AGG	-	chr1_2:5270180-5270199	Msa0051170:intron	40.0%
	TTGGTAAAGCTACACAAGTG+TGG	+	chr1_2:5270254-5270273	None:intergenic	40.0%
!!	AAGGCATTGCTCAAGCATAT+TGG	+	chr1_2:5270273-5270292	None:intergenic	40.0%
	ATTTGAGCCATGAGAGATCA+TGG	+	chr1_2:5270363-5270382	None:intergenic	40.0%
	CTTTGCTCCCTGAAATTATG+AGG	+	chr1_2:5270429-5270448	None:intergenic	40.0%
	CGTGAAGATCGTGAAATTGA+AGG	-	chr1_2:5270466-5270485	Msa0051170:intron	40.0%
	GAAGATCGTGAAATTGAAGG+TGG	-	chr1_2:5270469-5270488	Msa0051170:intron	40.0%
	CATGGACAAACTCCTAGAAA+TGG	-	chr1_2:5270682-5270701	Msa0051170:five_prime_UTR	40.0%
	AGGAGTTTGACACCATTTCT+AGG	+	chr1_2:5270697-5270716	None:intergenic	40.0%
	CATGGGAGGAAGACATTTAC+TGG	-	chr1_2:5266903-5266922	Msa0051170:three_prime_UTR	45.0%
	GTATCGGATATGTGTCGTGT+CGG	+	chr1_2:5267408-5267427	None:intergenic	45.0%
	ACACGACACATATCCGATAC+CGG	-	chr1_2:5267408-5267427	Msa0051170:intron	45.0%
	CATGGATTCACCATCAAGCA+TGG	-	chr1_2:5267530-5267549	Msa0051170:intron	45.0%
!!	CACCATCAAGCATGGTTTTG+TGG	-	chr1_2:5267538-5267557	Msa0051170:intron	45.0%
	GTGAACCTTAAAGGTCCTAG+TGG	-	chr1_2:5267704-5267723	Msa0051170:intron	45.0%
	CAACTCCACTAGGACCTTTA+AGG	+	chr1_2:5267712-5267731	None:intergenic	45.0%
	CCGTTTACTTCACAAACGGT+TGG	-	chr1_2:5267765-5267784	Msa0051170:intron	45.0%
	TACTTCACAAACGGTTGGCA+AGG	-	chr1_2:5267770-5267789	Msa0051170:intron	45.0%
	GTCAACACTGCTTCTAATGG+CGG	-	chr1_2:5267992-5268011	Msa0051170:intron	45.0%
!	TCTAATGGCGGTGTTGAATG+CGG	-	chr1_2:5268004-5268023	Msa0051170:intron	45.0%
!!	TTTTTGCCGGTTGTTTGGGA+GGG	+	chr1_2:5268172-5268191	None:intergenic	45.0%
!!	GGTCTTTTTGCCGGTTGTTT+GGG	+	chr1_2:5268176-5268195	None:intergenic	45.0%
!!	TGGTCTTTTTGCCGGTTGTT+TGG	+	chr1_2:5268177-5268196	None:intergenic	45.0%
!!	AGGCTTCTTGGTCTTTTTGC+CGG	+	chr1_2:5268185-5268204	None:intergenic	45.0%
!!	CCAGAAGTAGCTGATTTTGC+TGG	+	chr1_2:5268250-5268269	None:intergenic	45.0%
	CCAGCAAAATCAGCTACTTC+TGG	-	chr1_2:5268247-5268266	Msa0051170:intron	45.0%
	GCTTGTAGCAAGGAAAACTC+AGG	-	chr1_2:5268295-5268314	Msa0051170:intron	45.0%
	TGAGGGAAAGTGAGAATCAG+TGG	-	chr1_2:5268781-5268800	Msa0051170:intron	45.0%
	GAGGGAAAGTGAGAATCAGT+GGG	-	chr1_2:5268782-5268801	Msa0051170:intron	45.0%
!!	TGAGAATCAGTGGGTTAGCT+GGG	-	chr1_2:5268791-5268810	Msa0051170:intron	45.0%
!	CTGGGGATTCGGTTAATATG+AGG	-	chr1_2:5268809-5268828	Msa0051170:intron	45.0%
!	GGGATTCGGTTAATATGAGG+TGG	-	chr1_2:5268812-5268831	Msa0051170:intron	45.0%
!	TGGTCAAAAAGGCATGCAGA+AGG	+	chr1_2:5268955-5268974	None:intergenic	45.0%
	CTTTCAACTAATTCGGCAGG+CGG	+	chr1_2:5269064-5269083	None:intergenic	45.0%
	TGGCAAAGGGTCTGAACAAT+GGG	+	chr1_2:5269091-5269110	None:intergenic	45.0%
	TCGACCAACTTACTGGCAAA+GGG	+	chr1_2:5269104-5269123	None:intergenic	45.0%
	TTCGACCAACTTACTGGCAA+AGG	+	chr1_2:5269105-5269124	None:intergenic	45.0%
	TGAGCTCCTATGGATGAAGA+TGG	+	chr1_2:5269354-5269373	None:intergenic	45.0%
!	GCATAGGAAAGCACAGTAGA+TGG	-	chr1_2:5269466-5269485	Msa0051170:CDS	45.0%
	AGGAGGAAGACTAACTATGG+AGG	+	chr1_2:5269543-5269562	None:intergenic	45.0%
	TAGATAAGAGTCCTCTCCCT+AGG	-	chr1_2:5269567-5269586	Msa0051170:CDS	45.0%
	AGATAAGAGTCCTCTCCCTA+GGG	-	chr1_2:5269568-5269587	Msa0051170:CDS	45.0%
	GATATCTCCAAGACACCCTA+GGG	+	chr1_2:5269586-5269605	None:intergenic	45.0%
	ACTTGCAAATGTCTCACCCT+CGG	-	chr1_2:5269623-5269642	Msa0051170:CDS	45.0%
	CTAACTGCACAAGCCAAATC+TGG	-	chr1_2:5269671-5269690	Msa0051170:CDS	45.0%
	GGTACACATAGGTCCAGATT+TGG	+	chr1_2:5269687-5269706	None:intergenic	45.0%
	AAATTGGCAAGCTACTAGGG+GGG	+	chr1_2:5269724-5269743	None:intergenic	45.0%
!!	CCCTAGTAGCTTGCCAATTT+TGG	-	chr1_2:5269724-5269743	Msa0051170:CDS	45.0%
	GCCAAAATTGGCAAGCTACT+AGG	+	chr1_2:5269728-5269747	None:intergenic	45.0%
	GAGGAGGGAATTGCCAAAAT+TGG	+	chr1_2:5269740-5269759	None:intergenic	45.0%
!!	CACAAGACAAGCTTTGAGGA+GGG	+	chr1_2:5269755-5269774	None:intergenic	45.0%
!!	TCACAAGACAAGCTTTGAGG+AGG	+	chr1_2:5269756-5269775	None:intergenic	45.0%
!!	CTGTGTAGAGCATTGCTCTT+TGG	-	chr1_2:5269809-5269828	Msa0051170:CDS	45.0%
	CTCATACCCGAGTCTAACTT+AGG	+	chr1_2:5270056-5270075	None:intergenic	45.0%
	AGGGCCTTCCATCAACATAT+TGG	+	chr1_2:5270153-5270172	None:intergenic	45.0%
	GTGCTTTCCATGATCTCTCA+TGG	-	chr1_2:5270353-5270372	Msa0051170:intron	45.0%
!	GGTGGAAGCTGACTTTGTTT+CGG	-	chr1_2:5270487-5270506	Msa0051170:intron	45.0%
	TCAATGCTCTCGAGTCTTGA+TGG	-	chr1_2:5270634-5270653	Msa0051170:CDS	45.0%
	CAATGCTCTCGAGTCTTGAT+GGG	-	chr1_2:5270635-5270654	Msa0051170:CDS	45.0%
!	GAACGGAACAGAAAGGGTAC+AGG	+	chr1_2:5266776-5266795	None:intergenic	50.0%
!	TGGGAAGTGTGAACCGATCA+TGG	-	chr1_2:5266885-5266904	Msa0051170:three_prime_UTR	50.0%
!	GGGAAGTGTGAACCGATCAT+GGG	-	chr1_2:5266886-5266905	Msa0051170:three_prime_UTR	50.0%
	AAGTGTGAACCGATCATGGG+AGG	-	chr1_2:5266889-5266908	Msa0051170:three_prime_UTR	50.0%
	CACGACACATATCCGATACC+GGG	-	chr1_2:5267409-5267428	Msa0051170:intron	50.0%
	TACGAAGCAAGGACACTCCT+CGG	+	chr1_2:5267446-5267465	None:intergenic	50.0%
	AAGGTCCTAGTGGAGTTGTG+TGG	-	chr1_2:5267714-5267733	Msa0051170:intron	50.0%
	GAGACCTTATGCGAGAAAGC+AGG	-	chr1_2:5267884-5267903	Msa0051170:intron	50.0%
	AGAGCCTGCTTTCTCGCATA+AGG	+	chr1_2:5267891-5267910	None:intergenic	50.0%
	GGCTGATGCAGTCACTATTG+CGG	-	chr1_2:5268144-5268163	Msa0051170:intron	50.0%
!!	CTTTTTGCCGGTTGTTTGGG+AGG	+	chr1_2:5268173-5268192	None:intergenic	50.0%
	CCAGGCGTAACTTCGTTAAC+AGG	+	chr1_2:5268205-5268224	None:intergenic	50.0%
	CCTGTTAACGAAGTTACGCC+TGG	-	chr1_2:5268202-5268221	Msa0051170:intron	50.0%
!	TGATTGGGTGGCTTGTAGCA+AGG	-	chr1_2:5268285-5268304	Msa0051170:intron	50.0%
!!	GTGAGAATCAGTGGGTTAGC+TGG	-	chr1_2:5268790-5268809	Msa0051170:intron	50.0%
!!	GAGAATCAGTGGGTTAGCTG+GGG	-	chr1_2:5268792-5268811	Msa0051170:intron	50.0%
	TGGGAGTTGTGGAGTGATAG+AGG	-	chr1_2:5268832-5268851	Msa0051170:intron	50.0%
	GGGAGTTGTGGAGTGATAGA+GGG	-	chr1_2:5268833-5268852	Msa0051170:intron	50.0%
	GGAGTTGTGGAGTGATAGAG+GGG	-	chr1_2:5268834-5268853	Msa0051170:intron	50.0%
	GAGTTGTGGAGTGATAGAGG+GGG	-	chr1_2:5268835-5268854	Msa0051170:intron	50.0%
!!	GAGTGATAGAGGGGGTATCA+TGG	-	chr1_2:5268843-5268862	Msa0051170:intron	50.0%
	CGCCTGCCGAATTAGTTGAA+AGG	-	chr1_2:5269062-5269081	Msa0051170:intron	50.0%
	CTGGCAAAGGGTCTGAACAA+TGG	+	chr1_2:5269092-5269111	None:intergenic	50.0%
	CAGACCCTTTGCCAGTAAGT+TGG	-	chr1_2:5269097-5269116	Msa0051170:intron	50.0%
!!	GGTCGAATCGTTTTGATGGC+AGG	-	chr1_2:5269118-5269137	Msa0051170:intron	50.0%
	CGATATCTCCAAGACACCCT+AGG	+	chr1_2:5269587-5269606	None:intergenic	50.0%
!!	GTAGAGCATTGCTCTTTGGG+TGG	-	chr1_2:5269813-5269832	Msa0051170:CDS	50.0%
	AGCATTGCTCTTTGGGTGGT+AGG	-	chr1_2:5269817-5269836	Msa0051170:CDS	50.0%
	GCATTGCTCTTTGGGTGGTA+GGG	-	chr1_2:5269818-5269837	Msa0051170:CDS	50.0%
	CCGAGTCTAACTTAGGACCA+GGG	+	chr1_2:5270049-5270068	None:intergenic	50.0%
	CCCTGGTCCTAAGTTAGACT+CGG	-	chr1_2:5270046-5270065	Msa0051170:intron	50.0%
	CCTGGTCCTAAGTTAGACTC+GGG	-	chr1_2:5270047-5270066	Msa0051170:intron	50.0%
	TTGATGGAAGGCCCTTATCC+AGG	-	chr1_2:5270158-5270177	Msa0051170:intron	50.0%
	TGAAGCACGGACACGGAAAG+TGG	-	chr1_2:5267292-5267311	Msa0051170:intron	55.0%
	GATTAGGCGTGTCCCGGTAT+CGG	+	chr1_2:5267424-5267443	None:intergenic	55.0%
	GCAAGGACACTCCTCGGATT+AGG	+	chr1_2:5267440-5267459	None:intergenic	55.0%
	TACTGAGCAAGAGGGCGACA+AGG	-	chr1_2:5267940-5267959	Msa0051170:intron	55.0%
	ATCAGCCATGACCTGCTCAG+GGG	+	chr1_2:5268131-5268150	None:intergenic	55.0%
	CATCAGCCATGACCTGCTCA+GGG	+	chr1_2:5268132-5268151	None:intergenic	55.0%
!!	CAGTGGGTTAGCTGGGGATT+CGG	-	chr1_2:5268798-5268817	Msa0051170:intron	55.0%
	TGCTCTTTGGGTGGTAGGGA+TGG	-	chr1_2:5269822-5269841	Msa0051170:CDS	55.0%
	CCCGAGTCTAACTTAGGACC+AGG	+	chr1_2:5270050-5270069	None:intergenic	55.0%
	TGCTCTCGAGTCTTGATGGG+TGG	-	chr1_2:5270638-5270657	Msa0051170:exon	55.0%
!	TCCTCGGATTAGGCGTGTCC+CGG	+	chr1_2:5267430-5267449	None:intergenic	60.0%
	GCAAGAGGGCGACAAGGCAA+AGG	-	chr1_2:5267946-5267965	Msa0051170:intron	60.0%
	TGAGTCTGCTTCCCCTGAGC+AGG	-	chr1_2:5268117-5268136	Msa0051170:intron	60.0%
	TGCTTCCCCTGAGCAGGTCA+TGG	-	chr1_2:5268123-5268142	Msa0051170:intron	60.0%
	GCATCAGCCATGACCTGCTC+AGG	+	chr1_2:5268133-5268152	None:intergenic	60.0%
	GCGGTTCCCTCCCAAACAAC+CGG	-	chr1_2:5268163-5268182	Msa0051170:intron	60.0%
	GTCTTCCCCGCTTCTTAGGC+TGG	+	chr1_2:5268228-5268247	None:intergenic	60.0%
!!	GCTGGTCTTCCCCGCTTCTT+AGG	+	chr1_2:5268232-5268251	None:intergenic	60.0%
!	GTCCTCTCCCTAGGGTGTCT+TGG	-	chr1_2:5269576-5269595	Msa0051170:CDS	60.0%
	CTCCAAGACACCCTAGGGAG+AGG	+	chr1_2:5269581-5269600	None:intergenic	60.0%
	ACCGGGACACGCCTAATCCG+AGG	-	chr1_2:5267426-5267445	Msa0051170:intron	65.0%
	CGCCTGGCCAGCCTAAGAAG+CGG	-	chr1_2:5268218-5268237	Msa0051170:intron	65.0%
	GCCTGGCCAGCCTAAGAAGC+GGG	-	chr1_2:5268219-5268238	Msa0051170:intron	65.0%
	CCTGGCCAGCCTAAGAAGCG+GGG	-	chr1_2:5268220-5268239	Msa0051170:intron	65.0%
!	CCCCGCTTCTTAGGCTGGCC+AGG	+	chr1_2:5268223-5268242	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	5266765	5270773	5266765	ID=Msa0051170;Name=Msa0051170
chr1_2	mRNA	5266765	5270773	5266765	ID=Msa0051170-mRNA-1;Parent=Msa0051170;Name=Msa0051170-mRNA-1;_AED=0.42;_eAED=0.42;_QI=119\|1\|1\|1\|1\|1\|3\|275\|275
chr1_2	exon	5266765	5267098	5266765	ID=Msa0051170-mRNA-1:exon:1599;Parent=Msa0051170-mRNA-1
chr1_2	exon	5269222	5269885	5269222	ID=Msa0051170-mRNA-1:exon:1598;Parent=Msa0051170-mRNA-1
chr1_2	exon	5270550	5270773	5270550	ID=Msa0051170-mRNA-1:exon:1597;Parent=Msa0051170-mRNA-1
chr1_2	five_prime_UTR	5270655	5270773	5270655	ID=Msa0051170-mRNA-1:five_prime_utr;Parent=Msa0051170-mRNA-1
chr1_2	CDS	5270550	5270654	5270550	ID=Msa0051170-mRNA-1:cds;Parent=Msa0051170-mRNA-1
chr1_2	CDS	5269222	5269885	5269222	ID=Msa0051170-mRNA-1:cds;Parent=Msa0051170-mRNA-1
chr1_2	CDS	5267040	5267098	5267040	ID=Msa0051170-mRNA-1:cds;Parent=Msa0051170-mRNA-1
chr1_2	three_prime_UTR	5266765	5267039	5266765	ID=Msa0051170-mRNA-1:three_prime_utr;Parent=Msa0051170-mRNA-1

Gene Sequence

>Msa0051170

ATGGGAAGTGTGAACCGATCATGGGAGGAAGACATTTACTGGACCCATTTTCAGTTCATCCATTTCACTCAATTTCTTCGCAACACTGATTTTCAACAACAACTTGCACTTCCTAAAACATTTTCAGACAATTTAAAGAAGAAGTTGCCTGAAAATGTGAACCTTAAAGGTCCTAGTGGAGTTGTGTGGAATATAGGGCTGACAACTAAAGATGACACCGTTTACTTCACAAACGGTTGGCAAGGATTTGTGAATGATCACTCTTTGAAAGAGAGTGATCTCCTTTTTTTCAAGTACAATGGCGAATCGTTGTTTGAAGTTTTAATATTTCATGGCGAGACCTTATGCGAGAAAGCAGGCTCTTACTTTGTTAGAAAATGTGGAAAAGGTCATACTGAGCAAGAGGGCGACAAGGCAAAGGTTGCAAAGAATTCTGTTGAAGAAGTCAACACTGCTTCTAATGGCGGTGTTGAATGCGGTTCTGAGAAATTTCGGAAGCTTGACACTATAAGAACACCATTAGCTGTACCTTTCGAAAATACCAATGAAAAGACTTCTAATGCTGGTGTTGAGTCTGCTTCCCCTGAGCAGGTCATGGCTGATGCAGTCACTATTGCGGTTCCCTCCCAAACAACCGGCAAAAAGACCAAGAAGCCTGTTAACGAAGTTACGCCTGGCCAGCCTAAGAAGCGGGGAAGACCAGCAAAATCAGCTACTTCTGGCGAGAAAGCAATTGTTGATTGGGTGGCTTGTAGCAAGGAAAACTCAGGGAGCAAAGAGAAAGATGTTGATGATCGTGAAGATCGTGAAATTGAAGGTGGAAGCTGA

Protein sequence

>Msa0051170

MGSVNRSWEEDIYWTHFQFIHFTQFLRNTDFQQQLALPKTFSDNLKKKLPENVNLKGPSGVVWNIGLTTKDDTVYFTNGWQGFVNDHSLKESDLLFFKYNGESLFEVLIFHGETLCEKAGSYFVRKCGKGHTEQEGDKAKVAKNSVEEVNTASNGGVECGSEKFRKLDTIRTPLAVPFENTNEKTSNAGVESASPEQVMADAVTIAVPSQTTGKKTKKPVNEVTPGQPKKRGRPAKSATSGEKAIVDWVACSKENSGSKEKDVDDREDREIEGGS*