Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580710 | XP_024636626.1 | 95.636 | 275 | 9 | 1 | 1 | 275 | 1 | 272 | 0.0 | 540 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580710 | sp|Q8RYD1|REM16_ARATH | 56.452 | 124 | 52 | 2 | 8 | 130 | 11 | 133 | 2.64e-42 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580710 | A0A396JGK5 | 95.636 | 275 | 9 | 1 | 1 | 275 | 1 | 272 | 0.0 | 540 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0580710 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002380 | Msa0580710 | 0.909419 | 5.818345e-82 | -8.615850e-47 |
| Msa0008410 | Msa0580710 | 0.813707 | 2.233684e-51 | -8.615850e-47 |
| Msa0047980 | Msa0580710 | 0.846487 | 2.106706e-59 | -8.615850e-47 |
| Msa0051170 | Msa0580710 | 0.913745 | 4.307334e-84 | -8.615850e-47 |
| Msa0051270 | Msa0580710 | 0.921925 | 1.910545e-88 | -8.615850e-47 |
| Msa0064350 | Msa0580710 | 0.820221 | 7.691238e-53 | -8.615850e-47 |
| Msa0069330 | Msa0580710 | 0.843425 | 1.412369e-58 | -8.615850e-47 |
| Msa0073670 | Msa0580710 | 0.825392 | 4.807422e-54 | -8.615850e-47 |
| Msa0082280 | Msa0580710 | 0.832161 | 1.107241e-55 | -8.615850e-47 |
| Msa0094950 | Msa0580710 | 0.802904 | 4.494916e-49 | -8.615850e-47 |
| Msa0104550 | Msa0580710 | 0.845223 | 4.643230e-59 | -8.615850e-47 |
| Msa0129060 | Msa0580710 | 0.801205 | 1.004816e-48 | -8.615850e-47 |
| Msa0145470 | Msa0580710 | 0.828084 | 1.094407e-54 | -8.615850e-47 |
| Msa0150570 | Msa0580710 | 0.830482 | 2.865239e-55 | -8.615850e-47 |
| Msa0174770 | Msa0580710 | 0.827676 | 1.371505e-54 | -8.615850e-47 |
| Msa0174860 | Msa0580710 | 0.808674 | 2.757607e-50 | -8.615850e-47 |
| Msa0194480 | Msa0580710 | 0.800854 | 1.185314e-48 | -8.615850e-47 |
| Msa0199690 | Msa0580710 | 0.825010 | 5.917124e-54 | -8.615850e-47 |
| Msa0199880 | Msa0580710 | 0.832934 | 7.119650e-56 | -8.615850e-47 |
| Msa0225180 | Msa0580710 | 0.806814 | 6.852127e-50 | -8.615850e-47 |
| Msa0376690 | Msa0580710 | 0.818177 | 2.245402e-52 | -8.615850e-47 |
| Msa0387730 | Msa0580710 | 0.801016 | 1.098692e-48 | -8.615850e-47 |
| Msa0392940 | Msa0580710 | 0.817873 | 2.630832e-52 | -8.615850e-47 |
| Msa0402330 | Msa0580710 | 0.807883 | 4.065422e-50 | -8.615850e-47 |
| Msa0413450 | Msa0580710 | 0.812098 | 5.030026e-51 | -8.615850e-47 |
| Msa0471590 | Msa0580710 | 0.834512 | 2.872019e-56 | -8.615850e-47 |
| Msa0474950 | Msa0580710 | 0.824823 | 6.551486e-54 | -8.615850e-47 |
| Msa0241800 | Msa0580710 | 0.802770 | 4.791415e-49 | -8.615850e-47 |
| Msa0242230 | Msa0580710 | 0.819110 | 1.379665e-52 | -8.615850e-47 |
| Msa0260240 | Msa0580710 | 0.810901 | 9.155361e-51 | -8.615850e-47 |
| Msa0260280 | Msa0580710 | 0.809454 | 1.876918e-50 | -8.615850e-47 |
| Msa0260830 | Msa0580710 | 0.822533 | 2.251118e-53 | -8.615850e-47 |
| Msa0280430 | Msa0580710 | 0.810370 | 1.192257e-50 | -8.615850e-47 |
| Msa0280610 | Msa0580710 | 0.801999 | 6.906421e-49 | -8.615850e-47 |
| Msa0300120 | Msa0580710 | 0.818970 | 1.484705e-52 | -8.615850e-47 |
| Msa0304260 | Msa0580710 | 0.811669 | 6.237120e-51 | -8.615850e-47 |
| Msa0304300 | Msa0580710 | 0.801124 | 1.044036e-48 | -8.615850e-47 |
| Msa0319850 | Msa0580710 | 0.800407 | 1.462313e-48 | -8.615850e-47 |
| Msa0355270 | Msa0580710 | 0.810156 | 1.325700e-50 | -8.615850e-47 |
| Msa0505150 | Msa0580710 | 0.808883 | 2.488491e-50 | -8.615850e-47 |
| Msa0524500 | Msa0580710 | 0.801169 | 1.022266e-48 | -8.615850e-47 |
| Msa0552810 | Msa0580710 | 0.820862 | 5.480261e-53 | -8.615850e-47 |
| Msa0560470 | Msa0580710 | 0.819008 | 1.455123e-52 | -8.615850e-47 |
| Msa0580710 | Msa0581070 | 0.815986 | 6.977841e-52 | -8.615850e-47 |
| Msa0580710 | Msa0594910 | 0.800954 | 1.130798e-48 | -8.615850e-47 |
| Msa0580710 | Msa0600610 | 0.811062 | 8.446971e-51 | -8.615850e-47 |
| Msa0580710 | Msa0650920 | 0.811711 | 6.105538e-51 | -8.615850e-47 |
| Msa0580710 | Msa0687630 | 0.818569 | 1.830833e-52 | -8.615850e-47 |
| Msa0580710 | Msa0692840 | 0.827260 | 1.725697e-54 | -8.615850e-47 |
| Msa0580710 | Msa0692940 | 0.819761 | 9.800515e-53 | -8.615850e-47 |
| Msa0580710 | Msa0718740 | 0.800128 | 1.666369e-48 | -8.615850e-47 |
| Msa0580710 | Msa0726860 | 0.804778 | 1.835046e-49 | -8.615850e-47 |
| Msa0580710 | Msa0743800 | 0.809235 | 2.091195e-50 | -8.615850e-47 |
| Msa0580710 | Msa0763070 | 0.807381 | 5.196466e-50 | -8.615850e-47 |
| Msa0580710 | Msa0787750 | 0.836042 | 1.180091e-56 | -8.615850e-47 |
| Msa0580710 | Msa0797750 | 0.814174 | 1.761685e-51 | -8.615850e-47 |
| Msa0580710 | Msa0824640 | 0.806117 | 9.610102e-50 | -8.615850e-47 |
| Msa0580710 | Msa0847080 | 0.839418 | 1.603615e-57 | -8.615850e-47 |
| Msa0580710 | Msa0864010 | 0.803529 | 3.338496e-49 | -8.615850e-47 |
| Msa0580710 | Msa0900630 | 0.822045 | 2.922400e-53 | -8.615850e-47 |
| Msa0580710 | Msa0926460 | 0.811515 | 6.737519e-51 | -8.615850e-47 |
| Msa0580710 | Msa0931950 | 0.805271 | 1.446984e-49 | -8.615850e-47 |
| Msa0580710 | Msa0965860 | 0.808439 | 3.095045e-50 | -8.615850e-47 |
| Msa0580710 | Msa1000690 | 0.811489 | 6.824628e-51 | -8.615850e-47 |
| Msa0580710 | Msa1100720 | 0.802670 | 5.025091e-49 | -8.615850e-47 |
| Msa0580710 | Msa1101600 | 0.811450 | 6.960638e-51 | -8.615850e-47 |
| Msa0580710 | Msa1126510 | 0.828319 | 9.605939e-55 | -8.615850e-47 |
| Msa0580710 | Msa1126770 | 0.821137 | 4.736631e-53 | -8.615850e-47 |
| Msa0580710 | Msa1134110 | 0.803747 | 3.007076e-49 | -8.615850e-47 |
| Msa0580710 | Msa1143840 | 0.807415 | 5.110820e-50 | -8.615850e-47 |
| Msa0580710 | Msa1165870 | 0.809576 | 1.767329e-50 | -8.615850e-47 |
| Msa0580710 | Msa1166330 | 0.806694 | 7.263087e-50 | -8.615850e-47 |
| Msa0580710 | Msa1166340 | 0.802019 | 6.842887e-49 | -8.615850e-47 |
| Msa0580710 | Msa1166860 | 0.814933 | 1.196969e-51 | -8.615850e-47 |
| Msa0580710 | Msa1184370 | 0.819658 | 1.034652e-52 | -8.615850e-47 |
| Msa0580710 | Msa1227690 | 0.806443 | 8.204499e-50 | -8.615850e-47 |
| Msa0580710 | Msa1251160 | 0.802594 | 5.210220e-49 | -8.615850e-47 |
| Msa0580710 | Msa1304820 | 0.802427 | 5.638967e-49 | -8.615850e-47 |
| Msa0580710 | Msa1307950 | 0.825929 | 3.585772e-54 | -8.615850e-47 |
| Msa0580710 | Msa1335940 | 0.812432 | 4.252178e-51 | -8.615850e-47 |
| Msa0580710 | Msa1367590 | 0.815536 | 8.790466e-52 | -8.615850e-47 |
| Msa0580710 | Msa1370860 | 0.834551 | 2.806807e-56 | -8.615850e-47 |
| Msa0580710 | Msa1382780 | 0.806529 | 7.869984e-50 | -8.615850e-47 |
| Msa0580710 | Msa1397940 | 0.813738 | 2.199062e-51 | -8.615850e-47 |
| Msa0580710 | Msa1404190 | 0.816062 | 6.709383e-52 | -8.615850e-47 |
| Msa0580710 | Msa1431040 | 0.817490 | 3.210069e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580710 | MtrunA17_Chr1g0154241 | 95.636 | 275 | 9 | 1 | 1 | 275 | 1 | 272 | 0.0 | 540 |
| Msa0580710 | MtrunA17_Chr1g0154211 | 64.794 | 267 | 85 | 3 | 5 | 268 | 6 | 266 | 3.51e-118 | 344 |
| Msa0580710 | MtrunA17_Chr1g0154101 | 62.626 | 297 | 63 | 5 | 6 | 256 | 168 | 462 | 4.08e-114 | 347 |
| Msa0580710 | MtrunA17_Chr1g0154101 | 76.101 | 159 | 37 | 1 | 2 | 159 | 5 | 163 | 1.68e-81 | 261 |
| Msa0580710 | MtrunA17_Chr1g0154251 | 64.368 | 261 | 79 | 5 | 2 | 249 | 7 | 266 | 3.29e-110 | 327 |
| Msa0580710 | MtrunA17_Chr1g0154111 | 60.741 | 270 | 76 | 5 | 5 | 272 | 9 | 250 | 2.79e-101 | 307 |
| Msa0580710 | MtrunA17_Chr1g0154111 | 56.710 | 231 | 65 | 8 | 36 | 257 | 368 | 572 | 2.83e-68 | 222 |
| Msa0580710 | MtrunA17_Chr1g0154191 | 61.686 | 261 | 56 | 6 | 1 | 256 | 1 | 222 | 5.76e-98 | 291 |
| Msa0580710 | MtrunA17_Chr1g0154171 | 59.922 | 257 | 62 | 5 | 5 | 258 | 6 | 224 | 6.16e-90 | 271 |
| Msa0580710 | MtrunA17_Chr1g0154131 | 54.753 | 263 | 55 | 6 | 2 | 263 | 164 | 363 | 6.06e-82 | 254 |
| Msa0580710 | MtrunA17_Chr1g0154131 | 74.684 | 158 | 40 | 0 | 3 | 160 | 7 | 164 | 7.94e-81 | 251 |
| Msa0580710 | MtrunA17_Chr1g0154161 | 75.000 | 152 | 35 | 2 | 5 | 155 | 13 | 162 | 1.13e-74 | 231 |
| Msa0580710 | MtrunA17_Chr1g0154151 | 55.085 | 236 | 56 | 6 | 36 | 268 | 19 | 207 | 8.89e-73 | 226 |
| Msa0580710 | MtrunA17_Chr1g0154071 | 74.046 | 131 | 34 | 0 | 6 | 136 | 12 | 142 | 2.59e-65 | 211 |
| Msa0580710 | MtrunA17_Chr1g0154071 | 66.667 | 147 | 48 | 1 | 10 | 156 | 145 | 290 | 2.75e-62 | 204 |
| Msa0580710 | MtrunA17_Chr1g0154041 | 36.275 | 102 | 64 | 1 | 21 | 122 | 15 | 115 | 3.25e-16 | 78.2 |
| Msa0580710 | MtrunA17_Chr3g0131891 | 34.021 | 97 | 63 | 1 | 20 | 115 | 17 | 113 | 1.19e-13 | 70.1 |
| Msa0580710 | MtrunA17_Chr7g0233561 | 35.106 | 94 | 61 | 0 | 22 | 115 | 19 | 112 | 3.17e-13 | 68.6 |
| Msa0580710 | MtrunA17_Chr7g0233571 | 34.375 | 96 | 62 | 1 | 21 | 115 | 9 | 104 | 1.08e-12 | 65.9 |
| Msa0580710 | MtrunA17_Chr7g0233531 | 37.975 | 79 | 49 | 0 | 37 | 115 | 2 | 80 | 7.86e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580710 | AT4G33280.2 | 56.452 | 124 | 52 | 2 | 8 | 130 | 11 | 133 | 9.71e-44 | 150 |
| Msa0580710 | AT4G33280.1 | 56.452 | 124 | 52 | 2 | 8 | 130 | 11 | 133 | 2.68e-43 | 150 |
| Msa0580710 | AT4G33280.3 | 56.452 | 124 | 52 | 2 | 8 | 130 | 11 | 133 | 6.99e-43 | 151 |
| Msa0580710 | AT4G34400.2 | 37.113 | 97 | 60 | 1 | 22 | 118 | 17 | 112 | 2.10e-17 | 81.6 |
| Msa0580710 | AT4G34400.1 | 37.113 | 97 | 60 | 1 | 22 | 118 | 17 | 112 | 2.10e-17 | 81.6 |
| Msa0580710 | AT3G18990.1 | 34.951 | 103 | 58 | 1 | 32 | 125 | 17 | 119 | 1.09e-13 | 70.5 |
| Msa0580710 | AT3G18990.2 | 34.951 | 103 | 58 | 1 | 32 | 125 | 17 | 119 | 1.18e-13 | 70.5 |
| Msa0580710 | AT3G06220.1 | 32.584 | 89 | 59 | 1 | 22 | 110 | 11 | 98 | 1.65e-13 | 67.4 |
| Msa0580710 | AT3G06160.1 | 34.831 | 89 | 57 | 1 | 22 | 110 | 26 | 113 | 5.69e-13 | 68.6 |
| Msa0580710 | AT3G06160.5 | 34.831 | 89 | 57 | 1 | 22 | 110 | 11 | 98 | 8.10e-13 | 67.8 |
| Msa0580710 | AT3G06160.4 | 34.831 | 89 | 57 | 1 | 22 | 110 | 11 | 98 | 8.10e-13 | 67.8 |
| Msa0580710 | AT3G06160.3 | 34.831 | 89 | 57 | 1 | 22 | 110 | 11 | 98 | 8.10e-13 | 67.8 |
| Msa0580710 | AT3G06160.2 | 34.831 | 89 | 57 | 1 | 22 | 110 | 70 | 157 | 9.89e-13 | 67.8 |
| Msa0580710 | AT5G66980.1 | 41.463 | 82 | 44 | 1 | 33 | 110 | 21 | 102 | 1.60e-12 | 67.0 |
| Msa0580710 | AT5G60130.5 | 38.202 | 89 | 50 | 2 | 35 | 118 | 27 | 115 | 6.88e-12 | 64.3 |
| Msa0580710 | AT5G60130.3 | 38.202 | 89 | 50 | 2 | 35 | 118 | 1 | 89 | 1.35e-11 | 63.9 |
| Msa0580710 | AT5G60130.4 | 38.202 | 89 | 50 | 2 | 35 | 118 | 24 | 112 | 1.88e-11 | 63.9 |
| Msa0580710 | AT5G60130.1 | 38.202 | 89 | 50 | 2 | 35 | 118 | 27 | 115 | 2.00e-11 | 63.9 |
| Msa0580710 | AT5G60130.2 | 38.202 | 89 | 50 | 2 | 35 | 118 | 27 | 115 | 2.22e-11 | 63.5 |
Find 80 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTCCACTAGGACCTTTA+AGG | 0.183323 | 4_1:+85928922 | None:intergenic |
| CCTGAAAATGTGAACCTTAA+AGG | 0.211774 | 4_1:-85928936 | Msa0580710:CDS |
| TGAAATGGATGAACTGAAAA+TGG | 0.224125 | 4_1:+85929702 | None:intergenic |
| TTTGTCTCTCTGTTTCAAAA+TGG | 0.253518 | 4_1:-85929765 | Msa0580710:exon |
| GCTGGTCTTCCCCGCTTCTT+AGG | 0.270434 | 4_1:+85928402 | None:intergenic |
| AGTGGAGTTGTGTGGAATAT+AGG | 0.300231 | 4_1:-85928909 | Msa0580710:CDS |
| AGGAGTTTGGCACCATTTCT+AGG | 0.300433 | 4_1:+85925934 | None:intergenic |
| CATAAACTATTTGAGGAGTT+TGG | 0.301303 | 4_1:+85925921 | None:intergenic |
| AACAATATATTGCCTAGTTA+AGG | 0.302218 | 4_1:-85925878 | Msa0580710:three_prime_UTR |
| CATGGGAGGAAGACATTTAC+TGG | 0.340818 | 4_1:-85929727 | Msa0580710:CDS |
| AACTTCGTTAACAGGCTTCT+TGG | 0.341598 | 4_1:+85928437 | None:intergenic |
| CCAGGCGTAACTTCGTTAAC+AGG | 0.352395 | 4_1:+85928429 | None:intergenic |
| GTCTTCCCCGCTTCTTAGGC+TGG | 0.353235 | 4_1:+85928406 | None:intergenic |
| TTATGTTCCTTCAGAATAGA+AGG | 0.360823 | 4_1:-85926113 | Msa0580710:three_prime_UTR |
| AATGCGGTTCTGAGAAATTT+CGG | 0.363117 | 4_1:-85928611 | Msa0580710:CDS |
| CCCCGCTTCTTAGGCTGGCC+AGG | 0.381562 | 4_1:+85928411 | None:intergenic |
| CCAGCAAAATCAGCTACTTC+TGG | 0.385623 | 4_1:-85928384 | Msa0580710:CDS |
| TTGTCTCTCTGTTTCAAAAT+GGG | 0.414043 | 4_1:-85929764 | Msa0580710:exon |
| TCAATGCTCTCGAGTCTTGA+TGG | 0.415924 | 4_1:-85925994 | Msa0580710:three_prime_UTR |
| ACAATATATTGCCTAGTTAA+GGG | 0.416180 | 4_1:-85925877 | Msa0580710:three_prime_UTR |
| GGTGGAAGCTGACTTTGTTT+CGG | 0.419026 | 4_1:-85926144 | Msa0580710:exon |
| GTGGAGTTGTGTGGAATATA+GGG | 0.421556 | 4_1:-85928908 | Msa0580710:CDS |
| TTTGTTAGAAAATGTGGAAA+AGG | 0.421612 | 4_1:-85928717 | Msa0580710:CDS |
| GCATCAGCCATGACCTGCTC+AGG | 0.424246 | 4_1:+85928501 | None:intergenic |
| TGAGTCTGCTTCCCCTGAGC+AGG | 0.449413 | 4_1:-85928514 | Msa0580710:CDS |
| GCGAGAAAGCAATTGTTGAT+TGG | 0.450466 | 4_1:-85928362 | Msa0580710:CDS |
| TGGGAAGTGTGAACCGATCA+TGG | 0.456499 | 4_1:-85929745 | Msa0580710:CDS |
| TGCTTCCCCTGAGCAGGTCA+TGG | 0.458901 | 4_1:-85928508 | Msa0580710:CDS |
| ACAAAGAAATGGTTCAAAGT+TGG | 0.458957 | 4_1:+85929783 | None:intergenic |
| GAAGTCAACACTGCTTCTAA+TGG | 0.464985 | 4_1:-85928642 | Msa0580710:CDS |
| GCCTGGCCAGCCTAAGAAGC+GGG | 0.466869 | 4_1:-85928412 | Msa0580710:CDS |
| TATATCACATAAACTATTTG+AGG | 0.467509 | 4_1:+85925914 | None:intergenic |
| TGCGAAGAAATTGAGTGAAA+TGG | 0.470492 | 4_1:+85929687 | None:intergenic |
| GAAACAGAGAGACAAAGAAA+TGG | 0.473247 | 4_1:+85929772 | None:intergenic |
| AGAGCCTGCTTTCTCGCATA+AGG | 0.473371 | 4_1:+85928743 | None:intergenic |
| CCAACCGTTTGTGAAGTAAA+CGG | 0.478109 | 4_1:+85928866 | None:intergenic |
| CGAGAAAGCAATTGTTGATT+GGG | 0.485091 | 4_1:-85928361 | Msa0580710:CDS |
| GCGGTTCCCTCCCAAACAAC+CGG | 0.485847 | 4_1:-85928468 | Msa0580710:CDS |
| TCTTACTTTGTTAGAAAATG+TGG | 0.486876 | 4_1:-85928723 | Msa0580710:CDS |
| CATGGACAAACTCCTAGAAA+TGG | 0.504917 | 4_1:-85925946 | Msa0580710:three_prime_UTR |
| GACACCGTTTACTTCACAAA+CGG | 0.514012 | 4_1:-85928870 | Msa0580710:CDS |
| TACTTCACAAACGGTTGGCA+AGG | 0.517034 | 4_1:-85928861 | Msa0580710:CDS |
| CACATAATCAACCCTTAACT+AGG | 0.517999 | 4_1:+85925866 | None:intergenic |
| CAATGCTCTCGAGTCTTGAT+GGG | 0.526601 | 4_1:-85925993 | Msa0580710:three_prime_UTR |
| CCTGTTAACGAAGTTACGCC+TGG | 0.535294 | 4_1:-85928429 | Msa0580710:CDS |
| GAAATGGATGAACTGAAAAT+GGG | 0.537991 | 4_1:+85929703 | None:intergenic |
| AAGAAAAGAACGGAACAGAA+AGG | 0.542950 | 4_1:+85929850 | None:intergenic |
| AACATAACCTTCTATTCTGA+AGG | 0.545583 | 4_1:+85926106 | None:intergenic |
| AATGAAAAGACTTCTAATGC+TGG | 0.546042 | 4_1:-85928540 | Msa0580710:CDS |
| ATTTCTTAGTAGTAGATGCA+TGG | 0.551338 | 4_1:-85925964 | Msa0580710:three_prime_UTR |
| AGAAAAGAACGGAACAGAAA+GGG | 0.551636 | 4_1:+85929851 | None:intergenic |
| CCGTTTACTTCACAAACGGT+TGG | 0.558722 | 4_1:-85928866 | Msa0580710:CDS |
| AGGCAATATATTGTTCTCAA+AGG | 0.561581 | 4_1:+85925886 | None:intergenic |
| CATCAGCCATGACCTGCTCA+GGG | 0.563227 | 4_1:+85928502 | None:intergenic |
| CGCCTGGCCAGCCTAAGAAG+CGG | 0.563693 | 4_1:-85928413 | Msa0580710:CDS |
| GAAAGCAATTGTTGATTGGG+TGG | 0.568458 | 4_1:-85928358 | Msa0580710:CDS |
| AAATGTCTTCCTCCCATGAT+CGG | 0.572099 | 4_1:+85929732 | None:intergenic |
| CGTGAAGATCGTGAAATTGA+AGG | 0.574504 | 4_1:-85926165 | Msa0580710:CDS |
| ATATTCCACACAACTCCACT+AGG | 0.578077 | 4_1:+85928912 | None:intergenic |
| GATAGCACAAACTATTCTGA+AGG | 0.583435 | 4_1:+85926040 | None:intergenic |
| TGCTCTCGAGTCTTGATGGG+TGG | 0.586623 | 4_1:-85925990 | Msa0580710:three_prime_UTR |
| GAGACCTTATGCGAGAAAGC+AGG | 0.587625 | 4_1:-85928747 | Msa0580710:CDS |
| GCAAGAGGGCGACAAGGCAA+AGG | 0.587651 | 4_1:-85928685 | Msa0580710:CDS |
| GGGAAGTGTGAACCGATCAT+GGG | 0.593667 | 4_1:-85929744 | Msa0580710:CDS |
| GGCTGATGCAGTCACTATTG+CGG | 0.596142 | 4_1:-85928487 | Msa0580710:CDS |
| TACTGAGCAAGAGGGCGACA+AGG | 0.599125 | 4_1:-85928691 | Msa0580710:CDS |
| GAACGGAACAGAAAGGGTAC+AGG | 0.599703 | 4_1:+85929857 | None:intergenic |
| GTGAACCTTAAAGGTCCTAG+TGG | 0.609317 | 4_1:-85928927 | Msa0580710:CDS |
| AAAAGGTCATACTGAGCAAG+AGG | 0.615156 | 4_1:-85928700 | Msa0580710:CDS |
| AAGGTCCTAGTGGAGTTGTG+TGG | 0.624686 | 4_1:-85928917 | Msa0580710:CDS |
| GCTTGTAGCAAGGAAAACTC+AGG | 0.631925 | 4_1:-85928336 | Msa0580710:intron |
| CCTGGCCAGCCTAAGAAGCG+GGG | 0.640983 | 4_1:-85928411 | Msa0580710:CDS |
| GTCAACACTGCTTCTAATGG+CGG | 0.645750 | 4_1:-85928639 | Msa0580710:CDS |
| AAGTGTGAACCGATCATGGG+AGG | 0.649028 | 4_1:-85929741 | Msa0580710:CDS |
| TGATTGGGTGGCTTGTAGCA+AGG | 0.654638 | 4_1:-85928346 | Msa0580710:CDS |
| GAAGATCGTGAAATTGAAGG+TGG | 0.655920 | 4_1:-85926162 | Msa0580710:CDS |
| TCTAATGGCGGTGTTGAATG+CGG | 0.661026 | 4_1:-85928627 | Msa0580710:CDS |
| TGTTACAGTCAAGAAAAGAA+CGG | 0.663636 | 4_1:+85929840 | None:intergenic |
| AAAGGTCATACTGAGCAAGA+GGG | 0.680883 | 4_1:-85928699 | Msa0580710:CDS |
| ATCAGCCATGACCTGCTCAG+GGG | 0.726483 | 4_1:+85928503 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATACAAAAATTAAAAAGT+GGG | + | chr4_1:85926206-85926225 | None:intergenic | 15.0% |
| !! | AAGATACAAAAATTAAAAAG+TGG | + | chr4_1:85926207-85926226 | None:intergenic | 15.0% |
| !! | GTATATAAATATAATAAGCA+TGG | + | chr4_1:85926321-85926340 | None:intergenic | 15.0% |
| !!! | TGATTTTCTCAAATTATTAA+TGG | + | chr4_1:85926412-85926431 | None:intergenic | 15.0% |
| !! | TTCAATGTAATTATATGTAT+TGG | - | chr4_1:85926445-85926464 | Msa0580710:intron | 15.0% |
| !!! | TTTGAAGTTTTAATATTTCA+TGG | - | chr4_1:85926937-85926956 | Msa0580710:intron | 15.0% |
| !! | AAAAAAAAAAAATGCAAACA+TGG | - | chr4_1:85929407-85929426 | Msa0580710:intron | 15.0% |
| !! | AAAAAAAAAAAATAGAGAGA+AGG | - | chr4_1:85929632-85929651 | Msa0580710:intron | 15.0% |
| !!! | AAATTGTCTGAAAATGTTTT+AGG | + | chr4_1:85926739-85926758 | None:intergenic | 20.0% |
| !!! | ATGTATCAACTTAATTTTGA+GGG | - | chr4_1:85927841-85927860 | Msa0580710:intron | 20.0% |
| !!! | TATTTTAATGATGGTCAAAA+AGG | + | chr4_1:85928043-85928062 | None:intergenic | 20.0% |
| !! | CAAAACATATAGAAATTGAT+CGG | + | chr4_1:85928307-85928326 | None:intergenic | 20.0% |
| !! | TATATCACATAAACTATTTG+AGG | + | chr4_1:85929797-85929816 | None:intergenic | 20.0% |
| !! | TTTTTGTGTTATCAAAGGAA+AGG | + | chr4_1:85925901-85925920 | None:intergenic | 25.0% |
| ! | AATATGAACACTTAAGAACA+TGG | + | chr4_1:85926099-85926118 | None:intergenic | 25.0% |
| ! | TGTGTATATAATATGAAGCA+CGG | - | chr4_1:85926356-85926375 | Msa0580710:intron | 25.0% |
| ! | TAGTGTATATATAATGGCTT+GGG | - | chr4_1:85926541-85926560 | Msa0580710:intron | 25.0% |
| ! | TGGATTAAAGAAAGTGAATA+AGG | - | chr4_1:85926635-85926654 | Msa0580710:intron | 25.0% |
| ! | ATGTTGATACATTTATTTGC+AGG | - | chr4_1:85926708-85926727 | Msa0580710:intron | 25.0% |
| ! | TCTTACTTTGTTAGAAAATG+TGG | - | chr4_1:85926985-85927004 | Msa0580710:intron | 25.0% |
| ! | TTTGTTAGAAAATGTGGAAA+AGG | - | chr4_1:85926991-85927010 | Msa0580710:intron | 25.0% |
| !! | TTTTCATTGGTATTTTCGAA+AGG | + | chr4_1:85927156-85927175 | None:intergenic | 25.0% |
| !! | TTGTTTTCCGGTTTTTATAT+TGG | - | chr4_1:85927558-85927577 | Msa0580710:intron | 25.0% |
| ! | CTTATGACCAATATAAAAAC+CGG | + | chr4_1:85927568-85927587 | None:intergenic | 25.0% |
| !! | TTTTATATTGGTCATAAGCA+TGG | - | chr4_1:85927570-85927589 | Msa0580710:intron | 25.0% |
| ! | TGACAACAAAAAAAAAAAGC+TGG | + | chr4_1:85927743-85927762 | None:intergenic | 25.0% |
| ! | TTGAATCATGAATTCTTATG+AGG | - | chr4_1:85927808-85927827 | Msa0580710:intron | 25.0% |
| !! | GATGTATCAACTTAATTTTG+AGG | - | chr4_1:85927840-85927859 | Msa0580710:intron | 25.0% |
| !!! | GAATGCTAGTATTTTAATGA+TGG | + | chr4_1:85928052-85928071 | None:intergenic | 25.0% |
| ! | AGCATTCCATTTCTAATTAT+TGG | - | chr4_1:85928065-85928084 | Msa0580710:intron | 25.0% |
| ! | GAGAAACCAATAATTAGAAA+TGG | + | chr4_1:85928074-85928093 | None:intergenic | 25.0% |
| ! | TGAGAATAAATTTAGACCTA+TGG | + | chr4_1:85928467-85928486 | None:intergenic | 25.0% |
| ! | TTGATTTATTTGGTACACAT+AGG | + | chr4_1:85928775-85928794 | None:intergenic | 25.0% |
| !! | AGCATTTATTGATGGTTAAA+AGG | + | chr4_1:85928940-85928959 | None:intergenic | 25.0% |
| !! | TTCTCTTTAATTTCATGCTT+CGG | - | chr4_1:85928984-85929003 | Msa0580710:intron | 25.0% |
| !! | ATAAGATTTGATTCGTGATT+CGG | - | chr4_1:85929057-85929076 | Msa0580710:intron | 25.0% |
| ! | AGGTAACAAAAATTTGGAAA+AGG | + | chr4_1:85929206-85929225 | None:intergenic | 25.0% |
| ! | ATTGGTAGGTAACAAAAATT+TGG | + | chr4_1:85929212-85929231 | None:intergenic | 25.0% |
| ! | GAGGAATGAAGAAAAAAAAA+TGG | + | chr4_1:85929487-85929506 | None:intergenic | 25.0% |
| ! | AACAATATATTGCCTAGTTA+AGG | - | chr4_1:85929830-85929849 | Msa0580710:five_prime_UTR | 25.0% |
| ! | ACAATATATTGCCTAGTTAA+GGG | - | chr4_1:85929831-85929850 | Msa0580710:five_prime_UTR | 25.0% |
| TGTTACAGTCAAGAAAAGAA+CGG | + | chr4_1:85925871-85925890 | None:intergenic | 30.0% | |
| ! | GAAGCTTTTTGTGTTATCAA+AGG | + | chr4_1:85925906-85925925 | None:intergenic | 30.0% |
| ACAAAGAAATGGTTCAAAGT+TGG | + | chr4_1:85925928-85925947 | None:intergenic | 30.0% | |
| TTTGTCTCTCTGTTTCAAAA+TGG | - | chr4_1:85925943-85925962 | Msa0580710:three_prime_UTR | 30.0% | |
| TTGTCTCTCTGTTTCAAAAT+GGG | - | chr4_1:85925944-85925963 | Msa0580710:three_prime_UTR | 30.0% | |
| GAAATGGATGAACTGAAAAT+GGG | + | chr4_1:85926008-85926027 | None:intergenic | 30.0% | |
| TGAAATGGATGAACTGAAAA+TGG | + | chr4_1:85926009-85926028 | None:intergenic | 30.0% | |
| TATATATACACTACGAAGCA+AGG | + | chr4_1:85926534-85926553 | None:intergenic | 30.0% | |
| GCTTCGTAGTGTATATATAA+TGG | - | chr4_1:85926535-85926554 | Msa0580710:intron | 30.0% | |
| GTAGTGTATATATAATGGCT+TGG | - | chr4_1:85926540-85926559 | Msa0580710:intron | 30.0% | |
| !!! | CTTTTGAGACAATATGTTCA+TGG | - | chr4_1:85926589-85926608 | Msa0580710:intron | 30.0% |
| !!! | CTCCTTTTTTTCAAGTACAA+TGG | - | chr4_1:85926904-85926923 | Msa0580710:intron | 30.0% |
| ! | AGCATTAGAAGTCTTTTCAT+TGG | + | chr4_1:85927169-85927188 | None:intergenic | 30.0% |
| AATGAAAAGACTTCTAATGC+TGG | - | chr4_1:85927168-85927187 | Msa0580710:intron | 30.0% | |
| ATAAAAACCGGAAAACAAAC+TGG | + | chr4_1:85927556-85927575 | None:intergenic | 30.0% | |
| ! | TTCAGTTTAGAATCGAATCA+AGG | + | chr4_1:85927628-85927647 | None:intergenic | 30.0% |
| ATCAAATGACAAAAGAAACG+TGG | + | chr4_1:85927781-85927800 | None:intergenic | 30.0% | |
| !! | TTTCTTGCTTCTGTTATTTC+TGG | - | chr4_1:85928099-85928118 | Msa0580710:intron | 30.0% |
| ATTAAAGAAGAGTTGGACAA+TGG | + | chr4_1:85928278-85928297 | None:intergenic | 30.0% | |
| GATTTGAAGATACAATGTGA+AGG | + | chr4_1:85928400-85928419 | None:intergenic | 30.0% | |
| ! | TAGCAACTCAATTTTTGCAT+AGG | - | chr4_1:85928527-85928546 | Msa0580710:CDS | 30.0% |
| ! | TACATTGATGTTGATTATGC+AGG | + | chr4_1:85928595-85928614 | None:intergenic | 30.0% |
| AGAGGACTCTTATCTAAATT+AGG | + | chr4_1:85928640-85928659 | None:intergenic | 30.0% | |
| ATGGTGAGTCAATTCATTAA+TGG | + | chr4_1:85928727-85928746 | None:intergenic | 30.0% | |
| ! | CACATTCCATTTGCAATTTT+TGG | - | chr4_1:85928960-85928979 | Msa0580710:CDS | 30.0% |
| GAGAAACCAAAAATTGCAAA+TGG | + | chr4_1:85928969-85928988 | None:intergenic | 30.0% | |
| ATGCCTTATCTTACATTGAA+TGG | - | chr4_1:85929363-85929382 | Msa0580710:intron | 30.0% | |
| TGCCTTATCTTACATTGAAT+GGG | - | chr4_1:85929364-85929383 | Msa0580710:intron | 30.0% | |
| TCTTCATTCCTCATAATTTC+AGG | - | chr4_1:85929495-85929514 | Msa0580710:intron | 30.0% | |
| CTTCATTCCTCATAATTTCA+GGG | - | chr4_1:85929496-85929515 | Msa0580710:intron | 30.0% | |
| TTATGTTCCTTCAGAATAGA+AGG | - | chr4_1:85929595-85929614 | Msa0580710:intron | 30.0% | |
| AACATAACCTTCTATTCTGA+AGG | + | chr4_1:85929605-85929624 | None:intergenic | 30.0% | |
| ATTTCTTAGTAGTAGATGCA+TGG | - | chr4_1:85929744-85929763 | Msa0580710:CDS | 30.0% | |
| CATAAACTATTTGAGGAGTT+TGG | + | chr4_1:85929790-85929809 | None:intergenic | 30.0% | |
| AGGCAATATATTGTTCTCAA+AGG | + | chr4_1:85929825-85929844 | None:intergenic | 30.0% | |
| AGAAAAGAACGGAACAGAAA+GGG | + | chr4_1:85925860-85925879 | None:intergenic | 35.0% | |
| AAGAAAAGAACGGAACAGAA+AGG | + | chr4_1:85925861-85925880 | None:intergenic | 35.0% | |
| GAAACAGAGAGACAAAGAAA+TGG | + | chr4_1:85925939-85925958 | None:intergenic | 35.0% | |
| TGCGAAGAAATTGAGTGAAA+TGG | + | chr4_1:85926024-85926043 | None:intergenic | 35.0% | |
| TGGAAGGAAAGAAGAATGAA+GGG | + | chr4_1:85926079-85926098 | None:intergenic | 35.0% | |
| ATGGAAGGAAAGAAGAATGA+AGG | + | chr4_1:85926080-85926099 | None:intergenic | 35.0% | |
| TGAACACTTAAGAACATGGA+AGG | + | chr4_1:85926095-85926114 | None:intergenic | 35.0% | |
| TATAATATGAAGCACGGACA+CGG | - | chr4_1:85926362-85926381 | Msa0580710:intron | 35.0% | |
| !! | TATATGTATTGGTGTCGTGT+CGG | - | chr4_1:85926456-85926475 | Msa0580710:intron | 35.0% |
| !!! | CCTTTAAGGTTCACATTTTC+AGG | + | chr4_1:85926775-85926794 | None:intergenic | 35.0% |
| CCTGAAAATGTGAACCTTAA+AGG | - | chr4_1:85926772-85926791 | Msa0580710:intron | 35.0% | |
| CGCCATTGTACTTGAAAAAA+AGG | + | chr4_1:85926909-85926928 | None:intergenic | 35.0% | |
| !! | AATGCGGTTCTGAGAAATTT+CGG | - | chr4_1:85927097-85927116 | Msa0580710:intron | 35.0% |
| !! | TTTTCGAAAGGTACAGCTAA+TGG | + | chr4_1:85927144-85927163 | None:intergenic | 35.0% |
| ! | CGAGAAAGCAATTGTTGATT+GGG | - | chr4_1:85927347-85927366 | Msa0580710:intron | 35.0% |
| ACTAGAGATTCGTATCAACT+GGG | + | chr4_1:85927651-85927670 | None:intergenic | 35.0% | |
| AATGACAAAAGAAACGTGGT+TGG | + | chr4_1:85927777-85927796 | None:intergenic | 35.0% | |
| GGGTTTCCTTTCAACTAATT+CGG | + | chr4_1:85928148-85928167 | None:intergenic | 35.0% | |
| !! | TTAGCAGAAGTGTTGGTAAA+GGG | + | chr4_1:85928221-85928240 | None:intergenic | 35.0% |
| !! | ATTAGCAGAAGTGTTGGTAA+AGG | + | chr4_1:85928222-85928241 | None:intergenic | 35.0% |
| GCACTTCATTAAAGAAGAGT+TGG | + | chr4_1:85928285-85928304 | None:intergenic | 35.0% | |
| ATAATCCTATTCAGCATGAC+AGG | + | chr4_1:85928331-85928350 | None:intergenic | 35.0% | |
| ATCATACAACACAGCTTCAT+TGG | - | chr4_1:85928373-85928392 | Msa0580710:CDS | 35.0% | |
| AAATTTAGACCTATGGCACA+AGG | + | chr4_1:85928460-85928479 | None:intergenic | 35.0% | |
| ! | GAGTAAGAAGCATAGTTTAG+TGG | + | chr4_1:85928503-85928522 | None:intergenic | 35.0% |
| ! | GCAAAAATTGAGTTGCTAGA+AGG | + | chr4_1:85928525-85928544 | None:intergenic | 35.0% |
| ATTAGGAGGAAGACTAACTA+TGG | + | chr4_1:85928623-85928642 | None:intergenic | 35.0% | |
| GGACTCTTATCTAAATTAGG+AGG | + | chr4_1:85928637-85928656 | None:intergenic | 35.0% | |
| TCAATTCATTAATGGTCCGA+GGG | + | chr4_1:85928719-85928738 | None:intergenic | 35.0% | |
| ! | AGGGGGGAAATTGATTTATT+TGG | + | chr4_1:85928785-85928804 | None:intergenic | 35.0% |
| TCAAAGCTTGTCTTGTGATT+GGG | - | chr4_1:85928835-85928854 | Msa0580710:CDS | 35.0% | |
| GGTTAAAAGGATATGCAGAA+GGG | + | chr4_1:85928927-85928946 | None:intergenic | 35.0% | |
| TGGTTAAAAGGATATGCAGA+AGG | + | chr4_1:85928928-85928947 | None:intergenic | 35.0% | |
| GGAATGTGAGCATTTATTGA+TGG | + | chr4_1:85928948-85928967 | None:intergenic | 35.0% | |
| ! | TTTCATGCTTCGGTTATTTC+TGG | - | chr4_1:85928994-85929013 | Msa0580710:intron | 35.0% |
| ! | TGATTCGTGATTCGGAAAAT+AGG | - | chr4_1:85929065-85929084 | Msa0580710:intron | 35.0% |
| !! | GAATATCGATTTGATAACCC+TGG | - | chr4_1:85929106-85929125 | Msa0580710:intron | 35.0% |
| GTTACCTACCAATATGTTGA+TGG | - | chr4_1:85929219-85929238 | Msa0580710:intron | 35.0% | |
| TCTGTTTCATACCTGGATAA+GGG | + | chr4_1:85929249-85929268 | None:intergenic | 35.0% | |
| ATCTGTTTCATACCTGGATA+AGG | + | chr4_1:85929250-85929269 | None:intergenic | 35.0% | |
| GCCTTATCTTACATTGAATG+GGG | - | chr4_1:85929365-85929384 | Msa0580710:intron | 35.0% | |
| TCCCCATTCAATGTAAGATA+AGG | + | chr4_1:85929369-85929388 | None:intergenic | 35.0% | |
| GATAGCACAAACTATTCTGA+AGG | + | chr4_1:85929671-85929690 | None:intergenic | 35.0% | |
| CACATAATCAACCCTTAACT+AGG | + | chr4_1:85929845-85929864 | None:intergenic | 35.0% | |
| AAATGTCTTCCTCCCATGAT+CGG | + | chr4_1:85925979-85925998 | None:intergenic | 40.0% | |
| ATCCACAAAACCATGCTTGA+TGG | + | chr4_1:85926620-85926639 | None:intergenic | 40.0% | |
| ATATTCCACACAACTCCACT+AGG | + | chr4_1:85926799-85926818 | None:intergenic | 40.0% | |
| AGTGGAGTTGTGTGGAATAT+AGG | - | chr4_1:85926799-85926818 | Msa0580710:intron | 40.0% | |
| GTGGAGTTGTGTGGAATATA+GGG | - | chr4_1:85926800-85926819 | Msa0580710:intron | 40.0% | |
| GACACCGTTTACTTCACAAA+CGG | - | chr4_1:85926838-85926857 | Msa0580710:intron | 40.0% | |
| CCAACCGTTTGTGAAGTAAA+CGG | + | chr4_1:85926845-85926864 | None:intergenic | 40.0% | |
| AAAAGGTCATACTGAGCAAG+AGG | - | chr4_1:85927008-85927027 | Msa0580710:intron | 40.0% | |
| AAAGGTCATACTGAGCAAGA+GGG | - | chr4_1:85927009-85927028 | Msa0580710:intron | 40.0% | |
| GAAGTCAACACTGCTTCTAA+TGG | - | chr4_1:85927066-85927085 | Msa0580710:intron | 40.0% | |
| AACTTCGTTAACAGGCTTCT+TGG | + | chr4_1:85927274-85927293 | None:intergenic | 40.0% | |
| GCGAGAAAGCAATTGTTGAT+TGG | - | chr4_1:85927346-85927365 | Msa0580710:intron | 40.0% | |
| ! | GAAAGCAATTGTTGATTGGG+TGG | - | chr4_1:85927350-85927369 | Msa0580710:intron | 40.0% |
| !! | GTCCTAACCAGTTTGTTTTC+CGG | - | chr4_1:85927546-85927565 | Msa0580710:intron | 40.0% |
| AACCGGAAAACAAACTGGTT+AGG | + | chr4_1:85927551-85927570 | None:intergenic | 40.0% | |
| CACTAGAGATTCGTATCAAC+TGG | + | chr4_1:85927652-85927671 | None:intergenic | 40.0% | |
| !!! | TACTCAAAGTTTTGGTAGCG+TGG | + | chr4_1:85927715-85927734 | None:intergenic | 40.0% |
| ! | TGGTTCGCTACTCAAAGTTT+TGG | + | chr4_1:85927723-85927742 | None:intergenic | 40.0% |
| ! | GGATTCGGTTAATATGAGGT+GGG | - | chr4_1:85927890-85927909 | Msa0580710:intron | 40.0% |
| TTAATATGAGGTGGGAGTTG+TGG | - | chr4_1:85927898-85927917 | Msa0580710:intron | 40.0% | |
| TTCCTTTCAACTAATTCGGC+AGG | + | chr4_1:85928144-85928163 | None:intergenic | 40.0% | |
| AAACGATTCGACCAACTTAC+TGG | + | chr4_1:85928188-85928207 | None:intergenic | 40.0% | |
| ! | AGTTGGTCGAATCGTTTTGA+TGG | - | chr4_1:85928191-85928210 | Msa0580710:intron | 40.0% |
| ! | GCATCAATTAGCAGAAGTGT+TGG | + | chr4_1:85928228-85928247 | None:intergenic | 40.0% |
| TTTGTCCTGTCATGCTGAAT+AGG | - | chr4_1:85928323-85928342 | Msa0580710:intron | 40.0% | |
| TCAGTACCATCTTCATCCAT+AGG | - | chr4_1:85928422-85928441 | Msa0580710:CDS | 40.0% | |
| AAGGAATATGTGAGCTCCTA+TGG | + | chr4_1:85928441-85928460 | None:intergenic | 40.0% | |
| TCACATATTCCTTGTGCCAT+AGG | - | chr4_1:85928448-85928467 | Msa0580710:CDS | 40.0% | |
| TGATTATGCAGGTTCAGTGA+GGG | + | chr4_1:85928584-85928603 | None:intergenic | 40.0% | |
| TTGATTATGCAGGTTCAGTG+AGG | + | chr4_1:85928585-85928604 | None:intergenic | 40.0% | |
| GTCAATTCATTAATGGTCCG+AGG | + | chr4_1:85928720-85928739 | None:intergenic | 40.0% | |
| !! | TTTGGCTTGTGCAGTTAGTA+TGG | + | chr4_1:85928746-85928765 | None:intergenic | 40.0% |
| AAAATTGGCAAGCTACTAGG+GGG | + | chr4_1:85928802-85928821 | None:intergenic | 40.0% | |
| CAAAATTGGCAAGCTACTAG+GGG | + | chr4_1:85928803-85928822 | None:intergenic | 40.0% | |
| CCAAAATTGGCAAGCTACTA+GGG | + | chr4_1:85928804-85928823 | None:intergenic | 40.0% | |
| CAATCACAAGACAAGCTTTG+AGG | + | chr4_1:85928836-85928855 | None:intergenic | 40.0% | |
| CTCAAAGCTTGTCTTGTGAT+TGG | - | chr4_1:85928834-85928853 | Msa0580710:CDS | 40.0% | |
| !! | TGTGTAGAGCATTGCTCTTT+GGG | - | chr4_1:85928887-85928906 | Msa0580710:CDS | 40.0% |
| CCTTCCATCAACATATTGGT+AGG | + | chr4_1:85929226-85929245 | None:intergenic | 40.0% | |
| ! | CCTACCAATATGTTGATGGA+AGG | - | chr4_1:85929223-85929242 | Msa0580710:intron | 40.0% |
| CGTCAAATCTGTTTCATACC+TGG | + | chr4_1:85929256-85929275 | None:intergenic | 40.0% | |
| GTATGAAACAGATTTGACGC+AGG | - | chr4_1:85929257-85929276 | Msa0580710:intron | 40.0% | |
| TTGGTAAAGCTACACAAGTG+TGG | + | chr4_1:85929331-85929350 | None:intergenic | 40.0% | |
| !! | AAGGCATTGCTCAAGCATAT+TGG | + | chr4_1:85929350-85929369 | None:intergenic | 40.0% |
| ATTTGAGCCATGAGAGATCA+TGG | + | chr4_1:85929439-85929458 | None:intergenic | 40.0% | |
| CTTTGCTCCCTGAAATTATG+AGG | + | chr4_1:85929506-85929525 | None:intergenic | 40.0% | |
| CGTGAAGATCGTGAAATTGA+AGG | - | chr4_1:85929543-85929562 | Msa0580710:intron | 40.0% | |
| GAAGATCGTGAAATTGAAGG+TGG | - | chr4_1:85929546-85929565 | Msa0580710:intron | 40.0% | |
| CATGGACAAACTCCTAGAAA+TGG | - | chr4_1:85929762-85929781 | Msa0580710:exon | 40.0% | |
| CATGGGAGGAAGACATTTAC+TGG | - | chr4_1:85925981-85926000 | Msa0580710:three_prime_UTR | 45.0% | |
| ACACGACACATATCCGATAC+CGG | - | chr4_1:85926485-85926504 | Msa0580710:intron | 45.0% | |
| CATGGATTCACCATCAAGCA+TGG | - | chr4_1:85926607-85926626 | Msa0580710:intron | 45.0% | |
| !! | CACCATCAAGCATGGTTTTG+TGG | - | chr4_1:85926615-85926634 | Msa0580710:intron | 45.0% |
| GTGAACCTTAAAGGTCCTAG+TGG | - | chr4_1:85926781-85926800 | Msa0580710:intron | 45.0% | |
| CAACTCCACTAGGACCTTTA+AGG | + | chr4_1:85926789-85926808 | None:intergenic | 45.0% | |
| CCGTTTACTTCACAAACGGT+TGG | - | chr4_1:85926842-85926861 | Msa0580710:intron | 45.0% | |
| TACTTCACAAACGGTTGGCA+AGG | - | chr4_1:85926847-85926866 | Msa0580710:intron | 45.0% | |
| GTCAACACTGCTTCTAATGG+CGG | - | chr4_1:85927069-85927088 | Msa0580710:intron | 45.0% | |
| ! | TCTAATGGCGGTGTTGAATG+CGG | - | chr4_1:85927081-85927100 | Msa0580710:intron | 45.0% |
| !! | TTTTTGCCGGTTGTTTGGGA+GGG | + | chr4_1:85927249-85927268 | None:intergenic | 45.0% |
| !! | GGTCTTTTTGCCGGTTGTTT+GGG | + | chr4_1:85927253-85927272 | None:intergenic | 45.0% |
| !! | TGGTCTTTTTGCCGGTTGTT+TGG | + | chr4_1:85927254-85927273 | None:intergenic | 45.0% |
| !! | AGGCTTCTTGGTCTTTTTGC+CGG | + | chr4_1:85927262-85927281 | None:intergenic | 45.0% |
| !! | CCAGAAGTAGCTGATTTTGC+TGG | + | chr4_1:85927327-85927346 | None:intergenic | 45.0% |
| CCAGCAAAATCAGCTACTTC+TGG | - | chr4_1:85927324-85927343 | Msa0580710:intron | 45.0% | |
| GCTTGTAGCAAGGAAAACTC+AGG | - | chr4_1:85927372-85927391 | Msa0580710:intron | 45.0% | |
| TGAGGGAAAGTGAGAATCAG+TGG | - | chr4_1:85927858-85927877 | Msa0580710:intron | 45.0% | |
| GAGGGAAAGTGAGAATCAGT+GGG | - | chr4_1:85927859-85927878 | Msa0580710:intron | 45.0% | |
| !! | TGAGAATCAGTGGGTTAGCT+GGG | - | chr4_1:85927868-85927887 | Msa0580710:intron | 45.0% |
| ! | CTGGGGATTCGGTTAATATG+AGG | - | chr4_1:85927886-85927905 | Msa0580710:intron | 45.0% |
| ! | GGGATTCGGTTAATATGAGG+TGG | - | chr4_1:85927889-85927908 | Msa0580710:intron | 45.0% |
| ! | TGGTCAAAAAGGCATGCAGA+AGG | + | chr4_1:85928032-85928051 | None:intergenic | 45.0% |
| CTTTCAACTAATTCGGCAGG+CGG | + | chr4_1:85928141-85928160 | None:intergenic | 45.0% | |
| TGGCAAAGGGTCTGAACAAT+GGG | + | chr4_1:85928168-85928187 | None:intergenic | 45.0% | |
| TCGACCAACTTACTGGCAAA+GGG | + | chr4_1:85928181-85928200 | None:intergenic | 45.0% | |
| TTCGACCAACTTACTGGCAA+AGG | + | chr4_1:85928182-85928201 | None:intergenic | 45.0% | |
| TGAGCTCCTATGGATGAAGA+TGG | + | chr4_1:85928431-85928450 | None:intergenic | 45.0% | |
| ! | GCATAGGAAAGCACAGTAGA+TGG | - | chr4_1:85928543-85928562 | Msa0580710:CDS | 45.0% |
| AGGAGGAAGACTAACTATGG+AGG | + | chr4_1:85928620-85928639 | None:intergenic | 45.0% | |
| TAGATAAGAGTCCTCTCCCT+AGG | - | chr4_1:85928644-85928663 | Msa0580710:CDS | 45.0% | |
| AGATAAGAGTCCTCTCCCTA+GGG | - | chr4_1:85928645-85928664 | Msa0580710:CDS | 45.0% | |
| GATATCTCCAAGACACCCTA+GGG | + | chr4_1:85928663-85928682 | None:intergenic | 45.0% | |
| ACTTGCAAATGTCTCACCCT+CGG | - | chr4_1:85928700-85928719 | Msa0580710:CDS | 45.0% | |
| CTAACTGCACAAGCCAAATC+TGG | - | chr4_1:85928748-85928767 | Msa0580710:CDS | 45.0% | |
| GGTACACATAGGTCCAGATT+TGG | + | chr4_1:85928764-85928783 | None:intergenic | 45.0% | |
| AAATTGGCAAGCTACTAGGG+GGG | + | chr4_1:85928801-85928820 | None:intergenic | 45.0% | |
| !! | CCCTAGTAGCTTGCCAATTT+TGG | - | chr4_1:85928801-85928820 | Msa0580710:CDS | 45.0% |
| GCCAAAATTGGCAAGCTACT+AGG | + | chr4_1:85928805-85928824 | None:intergenic | 45.0% | |
| GAGGAGGGAATTGCCAAAAT+TGG | + | chr4_1:85928817-85928836 | None:intergenic | 45.0% | |
| !! | CACAAGACAAGCTTTGAGGA+GGG | + | chr4_1:85928832-85928851 | None:intergenic | 45.0% |
| !! | TCACAAGACAAGCTTTGAGG+AGG | + | chr4_1:85928833-85928852 | None:intergenic | 45.0% |
| !! | CTGTGTAGAGCATTGCTCTT+TGG | - | chr4_1:85928886-85928905 | Msa0580710:CDS | 45.0% |
| CTCATACCCGAGTCTAACTT+AGG | + | chr4_1:85929133-85929152 | None:intergenic | 45.0% | |
| AGGGCCTTCCATCAACATAT+TGG | + | chr4_1:85929230-85929249 | None:intergenic | 45.0% | |
| GTGCTTTCCATGATCTCTCA+TGG | - | chr4_1:85929429-85929448 | Msa0580710:intron | 45.0% | |
| ! | GGTGGAAGCTGACTTTGTTT+CGG | - | chr4_1:85929564-85929583 | Msa0580710:intron | 45.0% |
| TCAATGCTCTCGAGTCTTGA+TGG | - | chr4_1:85929714-85929733 | Msa0580710:CDS | 45.0% | |
| CAATGCTCTCGAGTCTTGAT+GGG | - | chr4_1:85929715-85929734 | Msa0580710:CDS | 45.0% | |
| AGGAGTTTGGCACCATTTCT+AGG | + | chr4_1:85929777-85929796 | None:intergenic | 45.0% | |
| ! | GAACGGAACAGAAAGGGTAC+AGG | + | chr4_1:85925854-85925873 | None:intergenic | 50.0% |
| ! | TGGGAAGTGTGAACCGATCA+TGG | - | chr4_1:85925963-85925982 | Msa0580710:three_prime_UTR | 50.0% |
| ! | GGGAAGTGTGAACCGATCAT+GGG | - | chr4_1:85925964-85925983 | Msa0580710:three_prime_UTR | 50.0% |
| AAGTGTGAACCGATCATGGG+AGG | - | chr4_1:85925967-85925986 | Msa0580710:three_prime_UTR | 50.0% | |
| !! | TATTGGTGTCGTGTCGGTGT+CGG | - | chr4_1:85926462-85926481 | Msa0580710:intron | 50.0% |
| CACGACACATATCCGATACC+GGG | - | chr4_1:85926486-85926505 | Msa0580710:intron | 50.0% | |
| TACGAAGCAAGGACACTCCT+CGG | + | chr4_1:85926523-85926542 | None:intergenic | 50.0% | |
| AAGGTCCTAGTGGAGTTGTG+TGG | - | chr4_1:85926791-85926810 | Msa0580710:intron | 50.0% | |
| GAGACCTTATGCGAGAAAGC+AGG | - | chr4_1:85926961-85926980 | Msa0580710:intron | 50.0% | |
| AGAGCCTGCTTTCTCGCATA+AGG | + | chr4_1:85926968-85926987 | None:intergenic | 50.0% | |
| GGCTGATGCAGTCACTATTG+CGG | - | chr4_1:85927221-85927240 | Msa0580710:intron | 50.0% | |
| !! | CTTTTTGCCGGTTGTTTGGG+AGG | + | chr4_1:85927250-85927269 | None:intergenic | 50.0% |
| CCAGGCGTAACTTCGTTAAC+AGG | + | chr4_1:85927282-85927301 | None:intergenic | 50.0% | |
| CCTGTTAACGAAGTTACGCC+TGG | - | chr4_1:85927279-85927298 | Msa0580710:intron | 50.0% | |
| ! | TGATTGGGTGGCTTGTAGCA+AGG | - | chr4_1:85927362-85927381 | Msa0580710:intron | 50.0% |
| !! | GTGAGAATCAGTGGGTTAGC+TGG | - | chr4_1:85927867-85927886 | Msa0580710:intron | 50.0% |
| !! | GAGAATCAGTGGGTTAGCTG+GGG | - | chr4_1:85927869-85927888 | Msa0580710:intron | 50.0% |
| TGGGAGTTGTGGAGTGATAG+AGG | - | chr4_1:85927909-85927928 | Msa0580710:intron | 50.0% | |
| GGGAGTTGTGGAGTGATAGA+GGG | - | chr4_1:85927910-85927929 | Msa0580710:intron | 50.0% | |
| GGAGTTGTGGAGTGATAGAG+GGG | - | chr4_1:85927911-85927930 | Msa0580710:intron | 50.0% | |
| GAGTTGTGGAGTGATAGAGG+GGG | - | chr4_1:85927912-85927931 | Msa0580710:intron | 50.0% | |
| !! | GAGTGATAGAGGGGGTATCA+TGG | - | chr4_1:85927920-85927939 | Msa0580710:intron | 50.0% |
| CGCCTGCCGAATTAGTTGAA+AGG | - | chr4_1:85928139-85928158 | Msa0580710:intron | 50.0% | |
| CTGGCAAAGGGTCTGAACAA+TGG | + | chr4_1:85928169-85928188 | None:intergenic | 50.0% | |
| CAGACCCTTTGCCAGTAAGT+TGG | - | chr4_1:85928174-85928193 | Msa0580710:intron | 50.0% | |
| !! | GGTCGAATCGTTTTGATGGC+AGG | - | chr4_1:85928195-85928214 | Msa0580710:intron | 50.0% |
| CGATATCTCCAAGACACCCT+AGG | + | chr4_1:85928664-85928683 | None:intergenic | 50.0% | |
| !! | GTAGAGCATTGCTCTTTGGG+TGG | - | chr4_1:85928890-85928909 | Msa0580710:CDS | 50.0% |
| AGCATTGCTCTTTGGGTGGT+AGG | - | chr4_1:85928894-85928913 | Msa0580710:CDS | 50.0% | |
| GCATTGCTCTTTGGGTGGTA+GGG | - | chr4_1:85928895-85928914 | Msa0580710:CDS | 50.0% | |
| CCGAGTCTAACTTAGGACCA+GGG | + | chr4_1:85929126-85929145 | None:intergenic | 50.0% | |
| CCCTGGTCCTAAGTTAGACT+CGG | - | chr4_1:85929123-85929142 | Msa0580710:intron | 50.0% | |
| CCTGGTCCTAAGTTAGACTC+GGG | - | chr4_1:85929124-85929143 | Msa0580710:intron | 50.0% | |
| TTGATGGAAGGCCCTTATCC+AGG | - | chr4_1:85929235-85929254 | Msa0580710:intron | 50.0% | |
| TGAAGCACGGACACGGAAAG+TGG | - | chr4_1:85926369-85926388 | Msa0580710:intron | 55.0% | |
| GATTAGGCGTGTCCCGGTAT+CGG | + | chr4_1:85926501-85926520 | None:intergenic | 55.0% | |
| GCAAGGACACTCCTCGGATT+AGG | + | chr4_1:85926517-85926536 | None:intergenic | 55.0% | |
| TACTGAGCAAGAGGGCGACA+AGG | - | chr4_1:85927017-85927036 | Msa0580710:intron | 55.0% | |
| ATCAGCCATGACCTGCTCAG+GGG | + | chr4_1:85927208-85927227 | None:intergenic | 55.0% | |
| CATCAGCCATGACCTGCTCA+GGG | + | chr4_1:85927209-85927228 | None:intergenic | 55.0% | |
| !! | CAGTGGGTTAGCTGGGGATT+CGG | - | chr4_1:85927875-85927894 | Msa0580710:intron | 55.0% |
| TGCTCTTTGGGTGGTAGGGA+TGG | - | chr4_1:85928899-85928918 | Msa0580710:CDS | 55.0% | |
| CCCGAGTCTAACTTAGGACC+AGG | + | chr4_1:85929127-85929146 | None:intergenic | 55.0% | |
| TGCTCTCGAGTCTTGATGGG+TGG | - | chr4_1:85929718-85929737 | Msa0580710:CDS | 55.0% | |
| ! | TCCTCGGATTAGGCGTGTCC+CGG | + | chr4_1:85926507-85926526 | None:intergenic | 60.0% |
| GCAAGAGGGCGACAAGGCAA+AGG | - | chr4_1:85927023-85927042 | Msa0580710:intron | 60.0% | |
| TGAGTCTGCTTCCCCTGAGC+AGG | - | chr4_1:85927194-85927213 | Msa0580710:intron | 60.0% | |
| TGCTTCCCCTGAGCAGGTCA+TGG | - | chr4_1:85927200-85927219 | Msa0580710:intron | 60.0% | |
| GCATCAGCCATGACCTGCTC+AGG | + | chr4_1:85927210-85927229 | None:intergenic | 60.0% | |
| GCGGTTCCCTCCCAAACAAC+CGG | - | chr4_1:85927240-85927259 | Msa0580710:intron | 60.0% | |
| GTCTTCCCCGCTTCTTAGGC+TGG | + | chr4_1:85927305-85927324 | None:intergenic | 60.0% | |
| !! | GCTGGTCTTCCCCGCTTCTT+AGG | + | chr4_1:85927309-85927328 | None:intergenic | 60.0% |
| ! | GTCCTCTCCCTAGGGTGTCT+TGG | - | chr4_1:85928653-85928672 | Msa0580710:CDS | 60.0% |
| CTCCAAGACACCCTAGGGAG+AGG | + | chr4_1:85928658-85928677 | None:intergenic | 60.0% | |
| ACCGGGACACGCCTAATCCG+AGG | - | chr4_1:85926503-85926522 | Msa0580710:intron | 65.0% | |
| CGCCTGGCCAGCCTAAGAAG+CGG | - | chr4_1:85927295-85927314 | Msa0580710:intron | 65.0% | |
| GCCTGGCCAGCCTAAGAAGC+GGG | - | chr4_1:85927296-85927315 | Msa0580710:intron | 65.0% | |
| CCTGGCCAGCCTAAGAAGCG+GGG | - | chr4_1:85927297-85927316 | Msa0580710:intron | 65.0% | |
| ! | CCCCGCTTCTTAGGCTGGCC+AGG | + | chr4_1:85927300-85927319 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 85925843 | 85929887 | 85925843 | ID=Msa0580710;Name=Msa0580710 |
| chr4_1 | mRNA | 85925843 | 85929887 | 85925843 | ID=Msa0580710-mRNA-1;Parent=Msa0580710;Name=Msa0580710-mRNA-1;_AED=0.11;_eAED=0.11;_QI=119|1|1|1|1|1|3|312|275 |
| chr4_1 | exon | 85925843 | 85926213 | 85925843 | ID=Msa0580710-mRNA-1:exon:31659;Parent=Msa0580710-mRNA-1 |
| chr4_1 | exon | 85928337 | 85929000 | 85928337 | ID=Msa0580710-mRNA-1:exon:31658;Parent=Msa0580710-mRNA-1 |
| chr4_1 | exon | 85929664 | 85929887 | 85929664 | ID=Msa0580710-mRNA-1:exon:31657;Parent=Msa0580710-mRNA-1 |
| chr4_1 | five_prime_UTR | 85929769 | 85929887 | 85929769 | ID=Msa0580710-mRNA-1:five_prime_utr;Parent=Msa0580710-mRNA-1 |
| chr4_1 | CDS | 85929664 | 85929768 | 85929664 | ID=Msa0580710-mRNA-1:cds;Parent=Msa0580710-mRNA-1 |
| chr4_1 | CDS | 85928337 | 85929000 | 85928337 | ID=Msa0580710-mRNA-1:cds;Parent=Msa0580710-mRNA-1 |
| chr4_1 | CDS | 85926155 | 85926213 | 85926155 | ID=Msa0580710-mRNA-1:cds;Parent=Msa0580710-mRNA-1 |
| chr4_1 | three_prime_UTR | 85925843 | 85926154 | 85925843 | ID=Msa0580710-mRNA-1:three_prime_utr;Parent=Msa0580710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
