Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0002380 | sp|Q8RYD1|REM16_ARATH | 56.452 | 124 | 52 | 2 | 8 | 130 | 11 | 133 | 2.64e-42 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0002380 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002380 | Msa0008410 | 0.810108 | 1.357759e-50 | -8.615850e-47 |
| Msa0002380 | Msa0047980 | 0.814771 | 1.300224e-51 | -8.615850e-47 |
| Msa0002380 | Msa0051170 | 0.939432 | 1.284795e-99 | -8.615850e-47 |
| Msa0002380 | Msa0051270 | 0.950751 | 8.611226e-109 | -8.615850e-47 |
| Msa0002380 | Msa0064350 | 0.821426 | 4.062582e-53 | -8.615850e-47 |
| Msa0002380 | Msa0069330 | 0.805786 | 1.128007e-49 | -8.615850e-47 |
| Msa0002380 | Msa0072810 | 0.804252 | 2.362058e-49 | -8.615850e-47 |
| Msa0002380 | Msa0073670 | 0.805845 | 1.096287e-49 | -8.615850e-47 |
| Msa0002380 | Msa0082280 | 0.822899 | 1.850575e-53 | -8.615850e-47 |
| Msa0002380 | Msa0104550 | 0.808548 | 2.934760e-50 | -8.615850e-47 |
| Msa0002380 | Msa0145470 | 0.848730 | 5.087735e-60 | -8.615850e-47 |
| Msa0002380 | Msa0174770 | 0.812808 | 3.519591e-51 | -8.615850e-47 |
| Msa0002380 | Msa0199690 | 0.816903 | 4.349364e-52 | -8.615850e-47 |
| Msa0002380 | Msa0225180 | 0.818683 | 1.724749e-52 | -8.615850e-47 |
| Msa0002380 | Msa0300120 | 0.817360 | 3.432845e-52 | -8.615850e-47 |
| Msa0002380 | Msa0355270 | 0.804344 | 2.259526e-49 | -8.615850e-47 |
| Msa0002380 | Msa0376690 | 0.813103 | 3.031975e-51 | -8.615850e-47 |
| Msa0002380 | Msa0392940 | 0.806068 | 9.841999e-50 | -8.615850e-47 |
| Msa0002380 | Msa0398840 | 0.807014 | 6.215333e-50 | -8.615850e-47 |
| Msa0002380 | Msa0402330 | 0.806270 | 8.922763e-50 | -8.615850e-47 |
| Msa0002380 | Msa0464630 | 0.805223 | 1.480717e-49 | -8.615850e-47 |
| Msa0002380 | Msa0471590 | 0.818207 | 2.210696e-52 | -8.615850e-47 |
| Msa0002380 | Msa0474950 | 0.801161 | 1.025927e-48 | -8.615850e-47 |
| Msa0002380 | Msa0485120 | 0.811504 | 6.773140e-51 | -8.615850e-47 |
| Msa0002380 | Msa0552810 | 0.809247 | 2.079820e-50 | -8.615850e-47 |
| Msa0002380 | Msa0560470 | 0.823124 | 1.639510e-53 | -8.615850e-47 |
| Msa0002380 | Msa0580710 | 0.909419 | 5.818345e-82 | -8.615850e-47 |
| Msa0002380 | Msa0581070 | 0.803912 | 2.779482e-49 | -8.615850e-47 |
| Msa0002380 | Msa0639120 | 0.811468 | 6.896806e-51 | -8.615850e-47 |
| Msa0002380 | Msa0687630 | 0.810517 | 1.108159e-50 | -8.615850e-47 |
| Msa0002380 | Msa0692840 | 0.818503 | 1.894336e-52 | -8.615850e-47 |
| Msa0002380 | Msa0692940 | 0.818248 | 2.164727e-52 | -8.615850e-47 |
| Msa0002380 | Msa0713820 | 0.809623 | 1.726689e-50 | -8.615850e-47 |
| Msa0002380 | Msa0726830 | 0.800120 | 1.672942e-48 | -8.615850e-47 |
| Msa0002380 | Msa0726860 | 0.801047 | 1.082651e-48 | -8.615850e-47 |
| Msa0002380 | Msa0743800 | 0.809258 | 2.068197e-50 | -8.615850e-47 |
| Msa0002380 | Msa0750430 | 0.801580 | 8.420757e-49 | -8.615850e-47 |
| Msa0002380 | Msa0787750 | 0.839287 | 1.733828e-57 | -8.615850e-47 |
| Msa0002380 | Msa0847080 | 0.823912 | 1.072587e-53 | -8.615850e-47 |
| Msa0002380 | Msa0872310 | 0.803245 | 3.821698e-49 | -8.615850e-47 |
| Msa0002380 | Msa0900630 | 0.820933 | 5.278252e-53 | -8.615850e-47 |
| Msa0002380 | Msa0905550 | 0.804711 | 1.894482e-49 | -8.615850e-47 |
| Msa0002380 | Msa0926460 | 0.808775 | 2.624088e-50 | -8.615850e-47 |
| Msa0002380 | Msa0937550 | 0.802095 | 6.599406e-49 | -8.615850e-47 |
| Msa0002380 | Msa0965860 | 0.802601 | 5.192195e-49 | -8.615850e-47 |
| Msa0002380 | Msa0967370 | 0.802559 | 5.296340e-49 | -8.615850e-47 |
| Msa0002380 | Msa1000690 | 0.803436 | 3.489484e-49 | -8.615850e-47 |
| Msa0002380 | Msa1091530 | 0.808117 | 3.626257e-50 | -8.615850e-47 |
| Msa0002380 | Msa1126510 | 0.810964 | 8.872405e-51 | -8.615850e-47 |
| Msa0002380 | Msa1126770 | 0.821077 | 4.889990e-53 | -8.615850e-47 |
| Msa0002380 | Msa1165870 | 0.802144 | 6.448948e-49 | -8.615850e-47 |
| Msa0002380 | Msa1290190 | 0.802230 | 6.190805e-49 | -8.615850e-47 |
| Msa0002380 | Msa1307950 | 0.809981 | 1.446231e-50 | -8.615850e-47 |
| Msa0002380 | Msa1315870 | 0.812899 | 3.360660e-51 | -8.615850e-47 |
| Msa0002380 | Msa1316830 | 0.804757 | 1.853486e-49 | -8.615850e-47 |
| Msa0002380 | Msa1335940 | 0.805436 | 1.336018e-49 | -8.615850e-47 |
| Msa0002380 | Msa1370860 | 0.826020 | 3.410490e-54 | -8.615850e-47 |
| Msa0002380 | Msa1397940 | 0.802083 | 6.636871e-49 | -8.615850e-47 |
| Msa0002380 | Msa1404190 | 0.816421 | 5.578608e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0002380 | MtrunA17_Chr1g0154241 | 95.636 | 275 | 9 | 1 | 1 | 275 | 1 | 272 | 0.0 | 540 |
| Msa0002380 | MtrunA17_Chr1g0154211 | 64.794 | 267 | 85 | 3 | 5 | 268 | 6 | 266 | 3.51e-118 | 344 |
| Msa0002380 | MtrunA17_Chr1g0154101 | 62.626 | 297 | 63 | 5 | 6 | 256 | 168 | 462 | 4.08e-114 | 347 |
| Msa0002380 | MtrunA17_Chr1g0154101 | 76.101 | 159 | 37 | 1 | 2 | 159 | 5 | 163 | 1.68e-81 | 261 |
| Msa0002380 | MtrunA17_Chr1g0154251 | 64.368 | 261 | 79 | 5 | 2 | 249 | 7 | 266 | 3.29e-110 | 327 |
| Msa0002380 | MtrunA17_Chr1g0154111 | 60.741 | 270 | 76 | 5 | 5 | 272 | 9 | 250 | 2.79e-101 | 307 |
| Msa0002380 | MtrunA17_Chr1g0154111 | 56.710 | 231 | 65 | 8 | 36 | 257 | 368 | 572 | 2.83e-68 | 222 |
| Msa0002380 | MtrunA17_Chr1g0154191 | 61.686 | 261 | 56 | 6 | 1 | 256 | 1 | 222 | 5.76e-98 | 291 |
| Msa0002380 | MtrunA17_Chr1g0154171 | 59.922 | 257 | 62 | 5 | 5 | 258 | 6 | 224 | 6.16e-90 | 271 |
| Msa0002380 | MtrunA17_Chr1g0154131 | 54.753 | 263 | 55 | 6 | 2 | 263 | 164 | 363 | 6.06e-82 | 254 |
| Msa0002380 | MtrunA17_Chr1g0154131 | 74.684 | 158 | 40 | 0 | 3 | 160 | 7 | 164 | 7.94e-81 | 251 |
| Msa0002380 | MtrunA17_Chr1g0154161 | 75.000 | 152 | 35 | 2 | 5 | 155 | 13 | 162 | 1.13e-74 | 231 |
| Msa0002380 | MtrunA17_Chr1g0154151 | 55.085 | 236 | 56 | 6 | 36 | 268 | 19 | 207 | 8.89e-73 | 226 |
| Msa0002380 | MtrunA17_Chr1g0154071 | 74.046 | 131 | 34 | 0 | 6 | 136 | 12 | 142 | 2.59e-65 | 211 |
| Msa0002380 | MtrunA17_Chr1g0154071 | 66.667 | 147 | 48 | 1 | 10 | 156 | 145 | 290 | 2.75e-62 | 204 |
| Msa0002380 | MtrunA17_Chr1g0154041 | 36.275 | 102 | 64 | 1 | 21 | 122 | 15 | 115 | 3.25e-16 | 78.2 |
| Msa0002380 | MtrunA17_Chr3g0131891 | 34.021 | 97 | 63 | 1 | 20 | 115 | 17 | 113 | 1.19e-13 | 70.1 |
| Msa0002380 | MtrunA17_Chr7g0233561 | 35.106 | 94 | 61 | 0 | 22 | 115 | 19 | 112 | 3.17e-13 | 68.6 |
| Msa0002380 | MtrunA17_Chr7g0233571 | 34.375 | 96 | 62 | 1 | 21 | 115 | 9 | 104 | 1.08e-12 | 65.9 |
| Msa0002380 | MtrunA17_Chr7g0233531 | 37.975 | 79 | 49 | 0 | 37 | 115 | 2 | 80 | 7.86e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0002380 | AT4G33280.2 | 56.452 | 124 | 52 | 2 | 8 | 130 | 11 | 133 | 9.71e-44 | 150 |
| Msa0002380 | AT4G33280.1 | 56.452 | 124 | 52 | 2 | 8 | 130 | 11 | 133 | 2.68e-43 | 150 |
| Msa0002380 | AT4G33280.3 | 56.452 | 124 | 52 | 2 | 8 | 130 | 11 | 133 | 6.99e-43 | 151 |
| Msa0002380 | AT4G34400.2 | 37.113 | 97 | 60 | 1 | 22 | 118 | 17 | 112 | 2.10e-17 | 81.6 |
| Msa0002380 | AT4G34400.1 | 37.113 | 97 | 60 | 1 | 22 | 118 | 17 | 112 | 2.10e-17 | 81.6 |
| Msa0002380 | AT3G18990.1 | 34.951 | 103 | 58 | 1 | 32 | 125 | 17 | 119 | 1.09e-13 | 70.5 |
| Msa0002380 | AT3G18990.2 | 34.951 | 103 | 58 | 1 | 32 | 125 | 17 | 119 | 1.18e-13 | 70.5 |
| Msa0002380 | AT3G06220.1 | 32.584 | 89 | 59 | 1 | 22 | 110 | 11 | 98 | 1.65e-13 | 67.4 |
| Msa0002380 | AT3G06160.1 | 34.831 | 89 | 57 | 1 | 22 | 110 | 26 | 113 | 5.69e-13 | 68.6 |
| Msa0002380 | AT3G06160.5 | 34.831 | 89 | 57 | 1 | 22 | 110 | 11 | 98 | 8.10e-13 | 67.8 |
| Msa0002380 | AT3G06160.4 | 34.831 | 89 | 57 | 1 | 22 | 110 | 11 | 98 | 8.10e-13 | 67.8 |
| Msa0002380 | AT3G06160.3 | 34.831 | 89 | 57 | 1 | 22 | 110 | 11 | 98 | 8.10e-13 | 67.8 |
| Msa0002380 | AT3G06160.2 | 34.831 | 89 | 57 | 1 | 22 | 110 | 70 | 157 | 9.89e-13 | 67.8 |
| Msa0002380 | AT5G66980.1 | 41.463 | 82 | 44 | 1 | 33 | 110 | 21 | 102 | 1.60e-12 | 67.0 |
| Msa0002380 | AT5G60130.5 | 38.202 | 89 | 50 | 2 | 35 | 118 | 27 | 115 | 6.88e-12 | 64.3 |
| Msa0002380 | AT5G60130.3 | 38.202 | 89 | 50 | 2 | 35 | 118 | 1 | 89 | 1.35e-11 | 63.9 |
| Msa0002380 | AT5G60130.4 | 38.202 | 89 | 50 | 2 | 35 | 118 | 24 | 112 | 1.88e-11 | 63.9 |
| Msa0002380 | AT5G60130.1 | 38.202 | 89 | 50 | 2 | 35 | 118 | 27 | 115 | 2.00e-11 | 63.9 |
| Msa0002380 | AT5G60130.2 | 38.202 | 89 | 50 | 2 | 35 | 118 | 27 | 115 | 2.22e-11 | 63.5 |
Find 79 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTCCACTAGGACCTTTA+AGG | 0.183323 | 1_1:+4277922 | None:intergenic |
| CCTGAAAATGTGAACCTTAA+AGG | 0.211774 | 1_1:-4277936 | Msa0002380:CDS |
| TGAAATGGATGAACTGAAAA+TGG | 0.224125 | 1_1:+4278702 | None:intergenic |
| TTTGTCTCTCTGTTTCAAAA+TGG | 0.253518 | 1_1:-4278765 | Msa0002380:exon |
| GCTGGTCTTCCCCGCTTCTT+AGG | 0.270434 | 1_1:+4277402 | None:intergenic |
| AGTGGAGTTGTGTGGAATAT+AGG | 0.300231 | 1_1:-4277909 | Msa0002380:CDS |
| AACAATATATTGCCTAGTTA+AGG | 0.302218 | 1_1:-4274884 | Msa0002380:three_prime_UTR |
| AGGAGTTTGACACCATTTCT+AGG | 0.335680 | 1_1:+4274940 | None:intergenic |
| CATGGGAGGAAGACATTTAC+TGG | 0.340818 | 1_1:-4278727 | Msa0002380:CDS |
| AACTTCGTTAACAGGCTTCT+TGG | 0.341598 | 1_1:+4277437 | None:intergenic |
| CCAGGCGTAACTTCGTTAAC+AGG | 0.352395 | 1_1:+4277429 | None:intergenic |
| GTCTTCCCCGCTTCTTAGGC+TGG | 0.353235 | 1_1:+4277406 | None:intergenic |
| TTATGTTCCTTCAGAATAGA+AGG | 0.360823 | 1_1:-4275114 | Msa0002380:three_prime_UTR |
| AATGCGGTTCTGAGAAATTT+CGG | 0.363117 | 1_1:-4277611 | Msa0002380:CDS |
| CCCCGCTTCTTAGGCTGGCC+AGG | 0.381562 | 1_1:+4277411 | None:intergenic |
| CCAGCAAAATCAGCTACTTC+TGG | 0.385623 | 1_1:-4277384 | Msa0002380:CDS |
| TTGTCTCTCTGTTTCAAAAT+GGG | 0.414043 | 1_1:-4278764 | Msa0002380:exon |
| TCAATGCTCTCGAGTCTTGA+TGG | 0.415924 | 1_1:-4275000 | Msa0002380:three_prime_UTR |
| ACAATATATTGCCTAGTTAA+GGG | 0.416180 | 1_1:-4274883 | Msa0002380:three_prime_UTR |
| GGTGGAAGCTGACTTTGTTT+CGG | 0.419026 | 1_1:-4275145 | Msa0002380:exon |
| GTGGAGTTGTGTGGAATATA+GGG | 0.421556 | 1_1:-4277908 | Msa0002380:CDS |
| TTTGTTAGAAAATGTGGAAA+AGG | 0.421612 | 1_1:-4277717 | Msa0002380:CDS |
| GCATCAGCCATGACCTGCTC+AGG | 0.424246 | 1_1:+4277501 | None:intergenic |
| TGAGTCTGCTTCCCCTGAGC+AGG | 0.449413 | 1_1:-4277514 | Msa0002380:CDS |
| GCGAGAAAGCAATTGTTGAT+TGG | 0.450466 | 1_1:-4277362 | Msa0002380:CDS |
| TGGGAAGTGTGAACCGATCA+TGG | 0.456499 | 1_1:-4278745 | Msa0002380:CDS |
| TGCTTCCCCTGAGCAGGTCA+TGG | 0.458901 | 1_1:-4277508 | Msa0002380:CDS |
| ACAAAGAAATGGTTCAAAGT+TGG | 0.458957 | 1_1:+4278783 | None:intergenic |
| GAAGTCAACACTGCTTCTAA+TGG | 0.464985 | 1_1:-4277642 | Msa0002380:CDS |
| GCCTGGCCAGCCTAAGAAGC+GGG | 0.466869 | 1_1:-4277412 | Msa0002380:CDS |
| TATATCACATAAACTATTTG+AGG | 0.467509 | 1_1:+4274920 | None:intergenic |
| TGCGAAGAAATTGAGTGAAA+TGG | 0.470492 | 1_1:+4278687 | None:intergenic |
| GAAACAGAGAGACAAAGAAA+TGG | 0.473247 | 1_1:+4278772 | None:intergenic |
| AGAGCCTGCTTTCTCGCATA+AGG | 0.473371 | 1_1:+4277743 | None:intergenic |
| CCAACCGTTTGTGAAGTAAA+CGG | 0.478109 | 1_1:+4277866 | None:intergenic |
| CGAGAAAGCAATTGTTGATT+GGG | 0.485091 | 1_1:-4277361 | Msa0002380:CDS |
| GCGGTTCCCTCCCAAACAAC+CGG | 0.485847 | 1_1:-4277468 | Msa0002380:CDS |
| TCTTACTTTGTTAGAAAATG+TGG | 0.486876 | 1_1:-4277723 | Msa0002380:CDS |
| CATGGACAAACTCCTAGAAA+TGG | 0.504917 | 1_1:-4274952 | Msa0002380:three_prime_UTR |
| GACACCGTTTACTTCACAAA+CGG | 0.514012 | 1_1:-4277870 | Msa0002380:CDS |
| TACTTCACAAACGGTTGGCA+AGG | 0.517034 | 1_1:-4277861 | Msa0002380:CDS |
| CACATAATCAACCCTTAACT+AGG | 0.517999 | 1_1:+4274872 | None:intergenic |
| CAATGCTCTCGAGTCTTGAT+GGG | 0.526601 | 1_1:-4274999 | Msa0002380:three_prime_UTR |
| AATAAAAGAACGGAACAGAA+AGG | 0.528722 | 1_1:+4278850 | None:intergenic |
| CCTGTTAACGAAGTTACGCC+TGG | 0.535294 | 1_1:-4277429 | Msa0002380:CDS |
| GAAATGGATGAACTGAAAAT+GGG | 0.537991 | 1_1:+4278703 | None:intergenic |
| AACATAACCTTCTATTCTGA+AGG | 0.545583 | 1_1:+4275107 | None:intergenic |
| AATGAAAAGACTTCTAATGC+TGG | 0.546042 | 1_1:-4277540 | Msa0002380:CDS |
| ATTTCTTAGTAGTAGATGCA+TGG | 0.551338 | 1_1:-4274970 | Msa0002380:three_prime_UTR |
| CCGTTTACTTCACAAACGGT+TGG | 0.558722 | 1_1:-4277866 | Msa0002380:CDS |
| AGGCAATATATTGTTCTCAA+AGG | 0.561581 | 1_1:+4274892 | None:intergenic |
| ATAAAAGAACGGAACAGAAA+GGG | 0.562420 | 1_1:+4278851 | None:intergenic |
| CATCAGCCATGACCTGCTCA+GGG | 0.563227 | 1_1:+4277502 | None:intergenic |
| CGCCTGGCCAGCCTAAGAAG+CGG | 0.563693 | 1_1:-4277413 | Msa0002380:CDS |
| GAAAGCAATTGTTGATTGGG+TGG | 0.568458 | 1_1:-4277358 | Msa0002380:CDS |
| AAATGTCTTCCTCCCATGAT+CGG | 0.572099 | 1_1:+4278732 | None:intergenic |
| CGTGAAGATCGTGAAATTGA+AGG | 0.574504 | 1_1:-4275166 | Msa0002380:CDS |
| ATATTCCACACAACTCCACT+AGG | 0.578077 | 1_1:+4277912 | None:intergenic |
| GATAGCACAAACTATTCTGA+AGG | 0.583811 | 1_1:+4275046 | None:intergenic |
| TGCTCTCGAGTCTTGATGGG+TGG | 0.586623 | 1_1:-4274996 | Msa0002380:three_prime_UTR |
| GAGACCTTATGCGAGAAAGC+AGG | 0.587625 | 1_1:-4277747 | Msa0002380:CDS |
| GCAAGAGGGCGACAAGGCAA+AGG | 0.587651 | 1_1:-4277685 | Msa0002380:CDS |
| GGGAAGTGTGAACCGATCAT+GGG | 0.593667 | 1_1:-4278744 | Msa0002380:CDS |
| GGCTGATGCAGTCACTATTG+CGG | 0.596142 | 1_1:-4277487 | Msa0002380:CDS |
| TACTGAGCAAGAGGGCGACA+AGG | 0.599125 | 1_1:-4277691 | Msa0002380:CDS |
| GAACGGAACAGAAAGGGTAC+AGG | 0.599703 | 1_1:+4278857 | None:intergenic |
| GTGAACCTTAAAGGTCCTAG+TGG | 0.609317 | 1_1:-4277927 | Msa0002380:CDS |
| AAAAGGTCATACTGAGCAAG+AGG | 0.615156 | 1_1:-4277700 | Msa0002380:CDS |
| AAGGTCCTAGTGGAGTTGTG+TGG | 0.624686 | 1_1:-4277917 | Msa0002380:CDS |
| GCTTGTAGCAAGGAAAACTC+AGG | 0.631925 | 1_1:-4277336 | Msa0002380:intron |
| TGTTACAGTCAATAAAAGAA+CGG | 0.638014 | 1_1:+4278840 | None:intergenic |
| CCTGGCCAGCCTAAGAAGCG+GGG | 0.640983 | 1_1:-4277411 | Msa0002380:CDS |
| GTCAACACTGCTTCTAATGG+CGG | 0.645750 | 1_1:-4277639 | Msa0002380:CDS |
| AAGTGTGAACCGATCATGGG+AGG | 0.649028 | 1_1:-4278741 | Msa0002380:CDS |
| TGATTGGGTGGCTTGTAGCA+AGG | 0.654638 | 1_1:-4277346 | Msa0002380:CDS |
| GAAGATCGTGAAATTGAAGG+TGG | 0.655920 | 1_1:-4275163 | Msa0002380:CDS |
| TCTAATGGCGGTGTTGAATG+CGG | 0.661026 | 1_1:-4277627 | Msa0002380:CDS |
| AAAGGTCATACTGAGCAAGA+GGG | 0.680883 | 1_1:-4277699 | Msa0002380:CDS |
| ATCAGCCATGACCTGCTCAG+GGG | 0.726483 | 1_1:+4277503 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATACAAAAATTAAAAAGT+GGG | + | chr1_1:4275247-4275266 | None:intergenic | 15.0% |
| !! | AAGATACAAAAATTAAAAAG+TGG | + | chr1_1:4275248-4275267 | None:intergenic | 15.0% |
| !! | AGTATATAAATATATAAGCA+TGG | + | chr1_1:4275362-4275381 | None:intergenic | 15.0% |
| !!! | TGATTTTCTCAAATTATTAA+TGG | + | chr1_1:4275452-4275471 | None:intergenic | 15.0% |
| !! | TTCAATGTAATTATATGTAT+TGG | - | chr1_1:4275485-4275504 | Msa0002380:intron | 15.0% |
| !!! | TTTGAAGTTTTAATATTTCA+TGG | - | chr1_1:4275977-4275996 | Msa0002380:intron | 15.0% |
| !! | AAAAAAAAAAAATGCAAACA+TGG | - | chr1_1:4278447-4278466 | Msa0002380:intron | 15.0% |
| !!! | AAATTGTCTGAAAATGTTTT+AGG | + | chr1_1:4275779-4275798 | None:intergenic | 20.0% |
| !!! | ATGTATCAACTTAATTTTGA+GGG | - | chr1_1:4276880-4276899 | Msa0002380:intron | 20.0% |
| !!! | TATTTTAATGATGGTCAAAA+AGG | + | chr1_1:4277082-4277101 | None:intergenic | 20.0% |
| !! | CAAAACATATAGAAATTGAT+CGG | + | chr1_1:4277346-4277365 | None:intergenic | 20.0% |
| !! | TATATCACATAAACTATTTG+AGG | + | chr1_1:4278831-4278850 | None:intergenic | 20.0% |
| ! | TGTTACAGTCAATAAAAGAA+CGG | + | chr1_1:4274911-4274930 | None:intergenic | 25.0% |
| !! | TTTTTGTGTTATCAAAGGAA+AGG | + | chr1_1:4274941-4274960 | None:intergenic | 25.0% |
| ! | AATATGAACACTTAAGAACA+TGG | + | chr1_1:4275139-4275158 | None:intergenic | 25.0% |
| ! | TGTGTATATAATATGAAGCA+CGG | - | chr1_1:4275396-4275415 | Msa0002380:intron | 25.0% |
| ! | TAGTGTATATATAATGGCTT+GGG | - | chr1_1:4275581-4275600 | Msa0002380:intron | 25.0% |
| ! | TGGATTAAAGAAAGTGAATA+AGG | - | chr1_1:4275675-4275694 | Msa0002380:intron | 25.0% |
| ! | ATGTTGATACATTTATTTGC+AGG | - | chr1_1:4275748-4275767 | Msa0002380:intron | 25.0% |
| ! | TCTTACTTTGTTAGAAAATG+TGG | - | chr1_1:4276025-4276044 | Msa0002380:intron | 25.0% |
| ! | TTTGTTAGAAAATGTGGAAA+AGG | - | chr1_1:4276031-4276050 | Msa0002380:intron | 25.0% |
| !! | TTTTCATTGGTATTTTCGAA+AGG | + | chr1_1:4276196-4276215 | None:intergenic | 25.0% |
| !! | TTGTTTTCCGGTTTTTATAT+TGG | - | chr1_1:4276598-4276617 | Msa0002380:intron | 25.0% |
| ! | CTTATGACCAATATAAAAAC+CGG | + | chr1_1:4276608-4276627 | None:intergenic | 25.0% |
| !! | TTTTATATTGGTCATAAGCA+TGG | - | chr1_1:4276610-4276629 | Msa0002380:intron | 25.0% |
| ! | TTGACAACAAAAAAAAAAGC+TGG | + | chr1_1:4276783-4276802 | None:intergenic | 25.0% |
| ! | TTGAATCATGAATTCTTATG+AGG | - | chr1_1:4276847-4276866 | Msa0002380:intron | 25.0% |
| !! | GATGTATCAACTTAATTTTG+AGG | - | chr1_1:4276879-4276898 | Msa0002380:intron | 25.0% |
| !!! | GAATGCTAGTATTTTAATGA+TGG | + | chr1_1:4277091-4277110 | None:intergenic | 25.0% |
| ! | AGCATTCCATTTCTAATTAT+TGG | - | chr1_1:4277104-4277123 | Msa0002380:intron | 25.0% |
| ! | GAGAAACCAATAATTAGAAA+TGG | + | chr1_1:4277113-4277132 | None:intergenic | 25.0% |
| ! | TGAGAATAAATTTAGACCTA+TGG | + | chr1_1:4277506-4277525 | None:intergenic | 25.0% |
| ! | TTGATTTATTTGGTACACAT+AGG | + | chr1_1:4277814-4277833 | None:intergenic | 25.0% |
| !! | AGCATTTATTGATGGTTAAA+AGG | + | chr1_1:4277979-4277998 | None:intergenic | 25.0% |
| !! | TTCTCTTTAATTTCATGCTT+CGG | - | chr1_1:4278023-4278042 | Msa0002380:intron | 25.0% |
| !! | ATAAGATTTGATTCGTGATT+CGG | - | chr1_1:4278096-4278115 | Msa0002380:intron | 25.0% |
| ! | AGGTAACAAAAATTTGGAAA+AGG | + | chr1_1:4278245-4278264 | None:intergenic | 25.0% |
| ! | ATTGGTAGGTAACAAAAATT+TGG | + | chr1_1:4278251-4278270 | None:intergenic | 25.0% |
| ! | TGAGGAATGAAGAAAAAAAA+TGG | + | chr1_1:4278527-4278546 | None:intergenic | 25.0% |
| ! | AACAATATATTGCCTAGTTA+AGG | - | chr1_1:4278864-4278883 | Msa0002380:five_prime_UTR | 25.0% |
| ATAAAAGAACGGAACAGAAA+GGG | + | chr1_1:4274900-4274919 | None:intergenic | 30.0% | |
| AATAAAAGAACGGAACAGAA+AGG | + | chr1_1:4274901-4274920 | None:intergenic | 30.0% | |
| ! | GAAGCTTTTTGTGTTATCAA+AGG | + | chr1_1:4274946-4274965 | None:intergenic | 30.0% |
| ACAAAGAAATGGTTCAAAGT+TGG | + | chr1_1:4274968-4274987 | None:intergenic | 30.0% | |
| TTTGTCTCTCTGTTTCAAAA+TGG | - | chr1_1:4274983-4275002 | Msa0002380:three_prime_UTR | 30.0% | |
| TTGTCTCTCTGTTTCAAAAT+GGG | - | chr1_1:4274984-4275003 | Msa0002380:three_prime_UTR | 30.0% | |
| GAAATGGATGAACTGAAAAT+GGG | + | chr1_1:4275048-4275067 | None:intergenic | 30.0% | |
| TGAAATGGATGAACTGAAAA+TGG | + | chr1_1:4275049-4275068 | None:intergenic | 30.0% | |
| TATATATACACTACGAAGCA+AGG | + | chr1_1:4275574-4275593 | None:intergenic | 30.0% | |
| GCTTCGTAGTGTATATATAA+TGG | - | chr1_1:4275575-4275594 | Msa0002380:intron | 30.0% | |
| GTAGTGTATATATAATGGCT+TGG | - | chr1_1:4275580-4275599 | Msa0002380:intron | 30.0% | |
| !!! | CTTTTGAGACAATATGTTCA+TGG | - | chr1_1:4275629-4275648 | Msa0002380:intron | 30.0% |
| !!! | CTCCTTTTTTTCAAGTACAA+TGG | - | chr1_1:4275944-4275963 | Msa0002380:intron | 30.0% |
| ! | AGCATTAGAAGTCTTTTCAT+TGG | + | chr1_1:4276209-4276228 | None:intergenic | 30.0% |
| AATGAAAAGACTTCTAATGC+TGG | - | chr1_1:4276208-4276227 | Msa0002380:intron | 30.0% | |
| ATAAAAACCGGAAAACAAAC+TGG | + | chr1_1:4276596-4276615 | None:intergenic | 30.0% | |
| ! | TTCAGTTTAGAATCGAATCA+AGG | + | chr1_1:4276668-4276687 | None:intergenic | 30.0% |
| ATCAAATGACAAAAGAAACG+TGG | + | chr1_1:4276820-4276839 | None:intergenic | 30.0% | |
| !! | TTTCTTGCTTCTGTTATTTC+TGG | - | chr1_1:4277138-4277157 | Msa0002380:intron | 30.0% |
| ATTAAAGAAGAGTTGGACAA+TGG | + | chr1_1:4277317-4277336 | None:intergenic | 30.0% | |
| GATTTGAAGATACAATGTGA+AGG | + | chr1_1:4277439-4277458 | None:intergenic | 30.0% | |
| ! | TAGCAACTCAATTTTTGCAT+AGG | - | chr1_1:4277566-4277585 | Msa0002380:CDS | 30.0% |
| ! | TACATTGATGTTGATTATGC+AGG | + | chr1_1:4277634-4277653 | None:intergenic | 30.0% |
| AGAGGACTCTTATCTAAATT+AGG | + | chr1_1:4277679-4277698 | None:intergenic | 30.0% | |
| ATGGTGAGTCAATTCATTAA+TGG | + | chr1_1:4277766-4277785 | None:intergenic | 30.0% | |
| ! | CACATTCCATTTGCAATTTT+TGG | - | chr1_1:4277999-4278018 | Msa0002380:intron | 30.0% |
| GAGAAACCAAAAATTGCAAA+TGG | + | chr1_1:4278008-4278027 | None:intergenic | 30.0% | |
| ATGCCTTATCTTACATTGAA+TGG | - | chr1_1:4278402-4278421 | Msa0002380:intron | 30.0% | |
| TGCCTTATCTTACATTGAAT+GGG | - | chr1_1:4278403-4278422 | Msa0002380:intron | 30.0% | |
| TCTTCATTCCTCATAATTTC+AGG | - | chr1_1:4278534-4278553 | Msa0002380:intron | 30.0% | |
| CTTCATTCCTCATAATTTCA+GGG | - | chr1_1:4278535-4278554 | Msa0002380:intron | 30.0% | |
| TTATGTTCCTTCAGAATAGA+AGG | - | chr1_1:4278634-4278653 | Msa0002380:intron | 30.0% | |
| AACATAACCTTCTATTCTGA+AGG | + | chr1_1:4278644-4278663 | None:intergenic | 30.0% | |
| CTTGTGAAAAAAAAGAGAGA+AGG | - | chr1_1:4278666-4278685 | Msa0002380:CDS | 30.0% | |
| ATTTCTTAGTAGTAGATGCA+TGG | - | chr1_1:4278778-4278797 | Msa0002380:five_prime_UTR | 30.0% | |
| AGGCAATATATTGTTCTCAA+AGG | + | chr1_1:4278859-4278878 | None:intergenic | 30.0% | |
| GAAACAGAGAGACAAAGAAA+TGG | + | chr1_1:4274979-4274998 | None:intergenic | 35.0% | |
| TGCGAAGAAATTGAGTGAAA+TGG | + | chr1_1:4275064-4275083 | None:intergenic | 35.0% | |
| TGGAAGGAAAGAAGAATGAA+GGG | + | chr1_1:4275119-4275138 | None:intergenic | 35.0% | |
| ATGGAAGGAAAGAAGAATGA+AGG | + | chr1_1:4275120-4275139 | None:intergenic | 35.0% | |
| TGAACACTTAAGAACATGGA+AGG | + | chr1_1:4275135-4275154 | None:intergenic | 35.0% | |
| TATAATATGAAGCACGGACA+CGG | - | chr1_1:4275402-4275421 | Msa0002380:intron | 35.0% | |
| !!! | CCTTTAAGGTTCACATTTTC+AGG | + | chr1_1:4275815-4275834 | None:intergenic | 35.0% |
| CCTGAAAATGTGAACCTTAA+AGG | - | chr1_1:4275812-4275831 | Msa0002380:intron | 35.0% | |
| CGCCATTGTACTTGAAAAAA+AGG | + | chr1_1:4275949-4275968 | None:intergenic | 35.0% | |
| !! | AATGCGGTTCTGAGAAATTT+CGG | - | chr1_1:4276137-4276156 | Msa0002380:intron | 35.0% |
| !! | TTTTCGAAAGGTACAGCTAA+TGG | + | chr1_1:4276184-4276203 | None:intergenic | 35.0% |
| ! | CGAGAAAGCAATTGTTGATT+GGG | - | chr1_1:4276387-4276406 | Msa0002380:intron | 35.0% |
| ACTAGAGATTCGTATCAACT+GGG | + | chr1_1:4276691-4276710 | None:intergenic | 35.0% | |
| AATGACAAAAGAAACGTGGT+TGG | + | chr1_1:4276816-4276835 | None:intergenic | 35.0% | |
| GGGTTTCCTTTCAACTAATT+CGG | + | chr1_1:4277187-4277206 | None:intergenic | 35.0% | |
| !! | TTAGCAGAAGTGTTGGTAAA+GGG | + | chr1_1:4277260-4277279 | None:intergenic | 35.0% |
| !! | ATTAGCAGAAGTGTTGGTAA+AGG | + | chr1_1:4277261-4277280 | None:intergenic | 35.0% |
| GCACTTCATTAAAGAAGAGT+TGG | + | chr1_1:4277324-4277343 | None:intergenic | 35.0% | |
| ATAATCCTATTCAGCATGAC+AGG | + | chr1_1:4277370-4277389 | None:intergenic | 35.0% | |
| ATCATACAACACAGCTTCAT+TGG | - | chr1_1:4277412-4277431 | Msa0002380:CDS | 35.0% | |
| AAATTTAGACCTATGGCACA+AGG | + | chr1_1:4277499-4277518 | None:intergenic | 35.0% | |
| ! | GAGTAAGAAGCATAGTTTAG+TGG | + | chr1_1:4277542-4277561 | None:intergenic | 35.0% |
| ! | GCAAAAATTGAGTTGCTAGA+AGG | + | chr1_1:4277564-4277583 | None:intergenic | 35.0% |
| ATTAGGAGGAAGACTAACTA+TGG | + | chr1_1:4277662-4277681 | None:intergenic | 35.0% | |
| GGACTCTTATCTAAATTAGG+AGG | + | chr1_1:4277676-4277695 | None:intergenic | 35.0% | |
| TCAATTCATTAATGGTCCGA+GGG | + | chr1_1:4277758-4277777 | None:intergenic | 35.0% | |
| ! | AGGGGGGAAATTGATTTATT+TGG | + | chr1_1:4277824-4277843 | None:intergenic | 35.0% |
| TCAAAGCTTGTCTTGTGATT+GGG | - | chr1_1:4277874-4277893 | Msa0002380:CDS | 35.0% | |
| GGTTAAAAGGATATGCAGAA+GGG | + | chr1_1:4277966-4277985 | None:intergenic | 35.0% | |
| TGGTTAAAAGGATATGCAGA+AGG | + | chr1_1:4277967-4277986 | None:intergenic | 35.0% | |
| GGAATGTGAGCATTTATTGA+TGG | + | chr1_1:4277987-4278006 | None:intergenic | 35.0% | |
| ! | TTTCATGCTTCGGTTATTTC+TGG | - | chr1_1:4278033-4278052 | Msa0002380:intron | 35.0% |
| ! | TGATTCGTGATTCGGAAAAT+AGG | - | chr1_1:4278104-4278123 | Msa0002380:intron | 35.0% |
| !! | GAATATCGATTTGATAACCC+TGG | - | chr1_1:4278145-4278164 | Msa0002380:intron | 35.0% |
| GTTACCTACCAATATGTTGA+TGG | - | chr1_1:4278258-4278277 | Msa0002380:intron | 35.0% | |
| TCTGTTTCATACCTGGATAA+GGG | + | chr1_1:4278288-4278307 | None:intergenic | 35.0% | |
| ATCTGTTTCATACCTGGATA+AGG | + | chr1_1:4278289-4278308 | None:intergenic | 35.0% | |
| GCCTTATCTTACATTGAATG+GGG | - | chr1_1:4278404-4278423 | Msa0002380:intron | 35.0% | |
| TCCCCATTCAATGTAAGATA+AGG | + | chr1_1:4278408-4278427 | None:intergenic | 35.0% | |
| GATAGCACAAACTATTCTGA+AGG | + | chr1_1:4278705-4278724 | None:intergenic | 35.0% | |
| AAATGTCTTCCTCCCATGAT+CGG | + | chr1_1:4275019-4275038 | None:intergenic | 40.0% | |
| ATCCACAAAACCATGCTTGA+TGG | + | chr1_1:4275660-4275679 | None:intergenic | 40.0% | |
| ATATTCCACACAACTCCACT+AGG | + | chr1_1:4275839-4275858 | None:intergenic | 40.0% | |
| AGTGGAGTTGTGTGGAATAT+AGG | - | chr1_1:4275839-4275858 | Msa0002380:intron | 40.0% | |
| GTGGAGTTGTGTGGAATATA+GGG | - | chr1_1:4275840-4275859 | Msa0002380:intron | 40.0% | |
| GACACCGTTTACTTCACAAA+CGG | - | chr1_1:4275878-4275897 | Msa0002380:intron | 40.0% | |
| CCAACCGTTTGTGAAGTAAA+CGG | + | chr1_1:4275885-4275904 | None:intergenic | 40.0% | |
| AAAAGGTCATACTGAGCAAG+AGG | - | chr1_1:4276048-4276067 | Msa0002380:intron | 40.0% | |
| AAAGGTCATACTGAGCAAGA+GGG | - | chr1_1:4276049-4276068 | Msa0002380:intron | 40.0% | |
| GAAGTCAACACTGCTTCTAA+TGG | - | chr1_1:4276106-4276125 | Msa0002380:intron | 40.0% | |
| AACTTCGTTAACAGGCTTCT+TGG | + | chr1_1:4276314-4276333 | None:intergenic | 40.0% | |
| GCGAGAAAGCAATTGTTGAT+TGG | - | chr1_1:4276386-4276405 | Msa0002380:intron | 40.0% | |
| ! | GAAAGCAATTGTTGATTGGG+TGG | - | chr1_1:4276390-4276409 | Msa0002380:intron | 40.0% |
| !! | GTCCTAACCAGTTTGTTTTC+CGG | - | chr1_1:4276586-4276605 | Msa0002380:intron | 40.0% |
| AACCGGAAAACAAACTGGTT+AGG | + | chr1_1:4276591-4276610 | None:intergenic | 40.0% | |
| CACTAGAGATTCGTATCAAC+TGG | + | chr1_1:4276692-4276711 | None:intergenic | 40.0% | |
| !!! | TACTCAAAGTTTTGGTAGCG+TGG | + | chr1_1:4276755-4276774 | None:intergenic | 40.0% |
| ! | TGGTTCGCTACTCAAAGTTT+TGG | + | chr1_1:4276763-4276782 | None:intergenic | 40.0% |
| ! | GGATTCGGTTAATATGAGGT+GGG | - | chr1_1:4276929-4276948 | Msa0002380:intron | 40.0% |
| TTAATATGAGGTGGGAGTTG+TGG | - | chr1_1:4276937-4276956 | Msa0002380:intron | 40.0% | |
| TTCCTTTCAACTAATTCGGC+AGG | + | chr1_1:4277183-4277202 | None:intergenic | 40.0% | |
| AAACGATTCGACCAACTTAC+TGG | + | chr1_1:4277227-4277246 | None:intergenic | 40.0% | |
| ! | AGTTGGTCGAATCGTTTTGA+TGG | - | chr1_1:4277230-4277249 | Msa0002380:intron | 40.0% |
| ! | GCATCAATTAGCAGAAGTGT+TGG | + | chr1_1:4277267-4277286 | None:intergenic | 40.0% |
| TTTGTCCTGTCATGCTGAAT+AGG | - | chr1_1:4277362-4277381 | Msa0002380:CDS | 40.0% | |
| TCAGTACCATCTTCATCCAT+AGG | - | chr1_1:4277461-4277480 | Msa0002380:CDS | 40.0% | |
| AAGGAATATGTGAGCTCCTA+TGG | + | chr1_1:4277480-4277499 | None:intergenic | 40.0% | |
| TCACATATTCCTTGTGCCAT+AGG | - | chr1_1:4277487-4277506 | Msa0002380:CDS | 40.0% | |
| TGATTATGCAGGTTCAGTGA+GGG | + | chr1_1:4277623-4277642 | None:intergenic | 40.0% | |
| TTGATTATGCAGGTTCAGTG+AGG | + | chr1_1:4277624-4277643 | None:intergenic | 40.0% | |
| GTCAATTCATTAATGGTCCG+AGG | + | chr1_1:4277759-4277778 | None:intergenic | 40.0% | |
| !! | TTTGGCTTGTGCAGTTAGTA+TGG | + | chr1_1:4277785-4277804 | None:intergenic | 40.0% |
| AAAATTGGCAAGCTACTAGG+GGG | + | chr1_1:4277841-4277860 | None:intergenic | 40.0% | |
| CAAAATTGGCAAGCTACTAG+GGG | + | chr1_1:4277842-4277861 | None:intergenic | 40.0% | |
| CCAAAATTGGCAAGCTACTA+GGG | + | chr1_1:4277843-4277862 | None:intergenic | 40.0% | |
| CAATCACAAGACAAGCTTTG+AGG | + | chr1_1:4277875-4277894 | None:intergenic | 40.0% | |
| CTCAAAGCTTGTCTTGTGAT+TGG | - | chr1_1:4277873-4277892 | Msa0002380:CDS | 40.0% | |
| !! | TGTGTAGAGCATTGCTCTTT+GGG | - | chr1_1:4277926-4277945 | Msa0002380:CDS | 40.0% |
| CCTTCCATCAACATATTGGT+AGG | + | chr1_1:4278265-4278284 | None:intergenic | 40.0% | |
| ! | CCTACCAATATGTTGATGGA+AGG | - | chr1_1:4278262-4278281 | Msa0002380:intron | 40.0% |
| CGTCAAATCTGTTTCATACC+TGG | + | chr1_1:4278295-4278314 | None:intergenic | 40.0% | |
| GTATGAAACAGATTTGACGC+AGG | - | chr1_1:4278296-4278315 | Msa0002380:intron | 40.0% | |
| TTGGTAAAGCTACACAAGTG+TGG | + | chr1_1:4278370-4278389 | None:intergenic | 40.0% | |
| !! | AAGGCATTGCTCAAGCATAT+TGG | + | chr1_1:4278389-4278408 | None:intergenic | 40.0% |
| ATTTGAGCCATGAGAGATCA+TGG | + | chr1_1:4278479-4278498 | None:intergenic | 40.0% | |
| CTTTGCTCCCTGAAATTATG+AGG | + | chr1_1:4278545-4278564 | None:intergenic | 40.0% | |
| CGTGAAGATCGTGAAATTGA+AGG | - | chr1_1:4278582-4278601 | Msa0002380:intron | 40.0% | |
| GAAGATCGTGAAATTGAAGG+TGG | - | chr1_1:4278585-4278604 | Msa0002380:intron | 40.0% | |
| CATGGACAAACTCCTAGAAA+TGG | - | chr1_1:4278796-4278815 | Msa0002380:five_prime_UTR | 40.0% | |
| AGGAGTTTGACACCATTTCT+AGG | + | chr1_1:4278811-4278830 | None:intergenic | 40.0% | |
| CATGGGAGGAAGACATTTAC+TGG | - | chr1_1:4275021-4275040 | Msa0002380:three_prime_UTR | 45.0% | |
| GTATCGGATATGTGTCGTGT+CGG | + | chr1_1:4275525-4275544 | None:intergenic | 45.0% | |
| ACACGACACATATCCGATAC+CGG | - | chr1_1:4275525-4275544 | Msa0002380:intron | 45.0% | |
| CATGGATTCACCATCAAGCA+TGG | - | chr1_1:4275647-4275666 | Msa0002380:intron | 45.0% | |
| !! | CACCATCAAGCATGGTTTTG+TGG | - | chr1_1:4275655-4275674 | Msa0002380:intron | 45.0% |
| GTGAACCTTAAAGGTCCTAG+TGG | - | chr1_1:4275821-4275840 | Msa0002380:intron | 45.0% | |
| CAACTCCACTAGGACCTTTA+AGG | + | chr1_1:4275829-4275848 | None:intergenic | 45.0% | |
| CCGTTTACTTCACAAACGGT+TGG | - | chr1_1:4275882-4275901 | Msa0002380:intron | 45.0% | |
| TACTTCACAAACGGTTGGCA+AGG | - | chr1_1:4275887-4275906 | Msa0002380:intron | 45.0% | |
| GTCAACACTGCTTCTAATGG+CGG | - | chr1_1:4276109-4276128 | Msa0002380:intron | 45.0% | |
| ! | TCTAATGGCGGTGTTGAATG+CGG | - | chr1_1:4276121-4276140 | Msa0002380:intron | 45.0% |
| !! | TTTTTGCCGGTTGTTTGGGA+GGG | + | chr1_1:4276289-4276308 | None:intergenic | 45.0% |
| !! | GGTCTTTTTGCCGGTTGTTT+GGG | + | chr1_1:4276293-4276312 | None:intergenic | 45.0% |
| !! | TGGTCTTTTTGCCGGTTGTT+TGG | + | chr1_1:4276294-4276313 | None:intergenic | 45.0% |
| !! | AGGCTTCTTGGTCTTTTTGC+CGG | + | chr1_1:4276302-4276321 | None:intergenic | 45.0% |
| !! | CCAGAAGTAGCTGATTTTGC+TGG | + | chr1_1:4276367-4276386 | None:intergenic | 45.0% |
| CCAGCAAAATCAGCTACTTC+TGG | - | chr1_1:4276364-4276383 | Msa0002380:intron | 45.0% | |
| GCTTGTAGCAAGGAAAACTC+AGG | - | chr1_1:4276412-4276431 | Msa0002380:intron | 45.0% | |
| TGAGGGAAAGTGAGAATCAG+TGG | - | chr1_1:4276897-4276916 | Msa0002380:intron | 45.0% | |
| GAGGGAAAGTGAGAATCAGT+GGG | - | chr1_1:4276898-4276917 | Msa0002380:intron | 45.0% | |
| !! | TGAGAATCAGTGGGTTAGCT+GGG | - | chr1_1:4276907-4276926 | Msa0002380:intron | 45.0% |
| ! | CTGGGGATTCGGTTAATATG+AGG | - | chr1_1:4276925-4276944 | Msa0002380:intron | 45.0% |
| ! | GGGATTCGGTTAATATGAGG+TGG | - | chr1_1:4276928-4276947 | Msa0002380:intron | 45.0% |
| ! | TGGTCAAAAAGGCATGCAGA+AGG | + | chr1_1:4277071-4277090 | None:intergenic | 45.0% |
| CTTTCAACTAATTCGGCAGG+CGG | + | chr1_1:4277180-4277199 | None:intergenic | 45.0% | |
| TGGCAAAGGGTCTGAACAAT+GGG | + | chr1_1:4277207-4277226 | None:intergenic | 45.0% | |
| TCGACCAACTTACTGGCAAA+GGG | + | chr1_1:4277220-4277239 | None:intergenic | 45.0% | |
| TTCGACCAACTTACTGGCAA+AGG | + | chr1_1:4277221-4277240 | None:intergenic | 45.0% | |
| TGAGCTCCTATGGATGAAGA+TGG | + | chr1_1:4277470-4277489 | None:intergenic | 45.0% | |
| ! | GCATAGGAAAGCACAGTAGA+TGG | - | chr1_1:4277582-4277601 | Msa0002380:CDS | 45.0% |
| AGGAGGAAGACTAACTATGG+AGG | + | chr1_1:4277659-4277678 | None:intergenic | 45.0% | |
| TAGATAAGAGTCCTCTCCCT+AGG | - | chr1_1:4277683-4277702 | Msa0002380:CDS | 45.0% | |
| AGATAAGAGTCCTCTCCCTA+GGG | - | chr1_1:4277684-4277703 | Msa0002380:CDS | 45.0% | |
| GATATCTCCAAGACACCCTA+GGG | + | chr1_1:4277702-4277721 | None:intergenic | 45.0% | |
| ACTTGCAAATGTCTCACCCT+CGG | - | chr1_1:4277739-4277758 | Msa0002380:CDS | 45.0% | |
| CTAACTGCACAAGCCAAATC+TGG | - | chr1_1:4277787-4277806 | Msa0002380:CDS | 45.0% | |
| GGTACACATAGGTCCAGATT+TGG | + | chr1_1:4277803-4277822 | None:intergenic | 45.0% | |
| AAATTGGCAAGCTACTAGGG+GGG | + | chr1_1:4277840-4277859 | None:intergenic | 45.0% | |
| !! | CCCTAGTAGCTTGCCAATTT+TGG | - | chr1_1:4277840-4277859 | Msa0002380:CDS | 45.0% |
| GCCAAAATTGGCAAGCTACT+AGG | + | chr1_1:4277844-4277863 | None:intergenic | 45.0% | |
| GAGGAGGGAATTGCCAAAAT+TGG | + | chr1_1:4277856-4277875 | None:intergenic | 45.0% | |
| !! | CACAAGACAAGCTTTGAGGA+GGG | + | chr1_1:4277871-4277890 | None:intergenic | 45.0% |
| !! | TCACAAGACAAGCTTTGAGG+AGG | + | chr1_1:4277872-4277891 | None:intergenic | 45.0% |
| !! | CTGTGTAGAGCATTGCTCTT+TGG | - | chr1_1:4277925-4277944 | Msa0002380:CDS | 45.0% |
| CTCATACCCGAGTCTAACTT+AGG | + | chr1_1:4278172-4278191 | None:intergenic | 45.0% | |
| AGGGCCTTCCATCAACATAT+TGG | + | chr1_1:4278269-4278288 | None:intergenic | 45.0% | |
| GTGCTTTCCATGATCTCTCA+TGG | - | chr1_1:4278469-4278488 | Msa0002380:intron | 45.0% | |
| ! | GGTGGAAGCTGACTTTGTTT+CGG | - | chr1_1:4278603-4278622 | Msa0002380:intron | 45.0% |
| TCAATGCTCTCGAGTCTTGA+TGG | - | chr1_1:4278748-4278767 | Msa0002380:CDS | 45.0% | |
| CAATGCTCTCGAGTCTTGAT+GGG | - | chr1_1:4278749-4278768 | Msa0002380:CDS | 45.0% | |
| ! | GAACGGAACAGAAAGGGTAC+AGG | + | chr1_1:4274894-4274913 | None:intergenic | 50.0% |
| ! | TGGGAAGTGTGAACCGATCA+TGG | - | chr1_1:4275003-4275022 | Msa0002380:three_prime_UTR | 50.0% |
| ! | GGGAAGTGTGAACCGATCAT+GGG | - | chr1_1:4275004-4275023 | Msa0002380:three_prime_UTR | 50.0% |
| AAGTGTGAACCGATCATGGG+AGG | - | chr1_1:4275007-4275026 | Msa0002380:three_prime_UTR | 50.0% | |
| CACGACACATATCCGATACC+GGG | - | chr1_1:4275526-4275545 | Msa0002380:intron | 50.0% | |
| TACGAAGCAAGGACACTCCT+CGG | + | chr1_1:4275563-4275582 | None:intergenic | 50.0% | |
| AAGGTCCTAGTGGAGTTGTG+TGG | - | chr1_1:4275831-4275850 | Msa0002380:intron | 50.0% | |
| GAGACCTTATGCGAGAAAGC+AGG | - | chr1_1:4276001-4276020 | Msa0002380:intron | 50.0% | |
| AGAGCCTGCTTTCTCGCATA+AGG | + | chr1_1:4276008-4276027 | None:intergenic | 50.0% | |
| GGCTGATGCAGTCACTATTG+CGG | - | chr1_1:4276261-4276280 | Msa0002380:intron | 50.0% | |
| !! | CTTTTTGCCGGTTGTTTGGG+AGG | + | chr1_1:4276290-4276309 | None:intergenic | 50.0% |
| CCAGGCGTAACTTCGTTAAC+AGG | + | chr1_1:4276322-4276341 | None:intergenic | 50.0% | |
| CCTGTTAACGAAGTTACGCC+TGG | - | chr1_1:4276319-4276338 | Msa0002380:intron | 50.0% | |
| ! | TGATTGGGTGGCTTGTAGCA+AGG | - | chr1_1:4276402-4276421 | Msa0002380:intron | 50.0% |
| !! | GTGAGAATCAGTGGGTTAGC+TGG | - | chr1_1:4276906-4276925 | Msa0002380:intron | 50.0% |
| !! | GAGAATCAGTGGGTTAGCTG+GGG | - | chr1_1:4276908-4276927 | Msa0002380:intron | 50.0% |
| TGGGAGTTGTGGAGTGATAG+AGG | - | chr1_1:4276948-4276967 | Msa0002380:intron | 50.0% | |
| GGGAGTTGTGGAGTGATAGA+GGG | - | chr1_1:4276949-4276968 | Msa0002380:intron | 50.0% | |
| GGAGTTGTGGAGTGATAGAG+GGG | - | chr1_1:4276950-4276969 | Msa0002380:intron | 50.0% | |
| GAGTTGTGGAGTGATAGAGG+GGG | - | chr1_1:4276951-4276970 | Msa0002380:intron | 50.0% | |
| !! | GAGTGATAGAGGGGGTATCA+TGG | - | chr1_1:4276959-4276978 | Msa0002380:intron | 50.0% |
| CGCCTGCCGAATTAGTTGAA+AGG | - | chr1_1:4277178-4277197 | Msa0002380:intron | 50.0% | |
| CTGGCAAAGGGTCTGAACAA+TGG | + | chr1_1:4277208-4277227 | None:intergenic | 50.0% | |
| CAGACCCTTTGCCAGTAAGT+TGG | - | chr1_1:4277213-4277232 | Msa0002380:intron | 50.0% | |
| !! | GGTCGAATCGTTTTGATGGC+AGG | - | chr1_1:4277234-4277253 | Msa0002380:intron | 50.0% |
| CGATATCTCCAAGACACCCT+AGG | + | chr1_1:4277703-4277722 | None:intergenic | 50.0% | |
| !! | GTAGAGCATTGCTCTTTGGG+TGG | - | chr1_1:4277929-4277948 | Msa0002380:CDS | 50.0% |
| AGCATTGCTCTTTGGGTGGT+AGG | - | chr1_1:4277933-4277952 | Msa0002380:CDS | 50.0% | |
| GCATTGCTCTTTGGGTGGTA+GGG | - | chr1_1:4277934-4277953 | Msa0002380:CDS | 50.0% | |
| CCGAGTCTAACTTAGGACCA+GGG | + | chr1_1:4278165-4278184 | None:intergenic | 50.0% | |
| CCCTGGTCCTAAGTTAGACT+CGG | - | chr1_1:4278162-4278181 | Msa0002380:intron | 50.0% | |
| CCTGGTCCTAAGTTAGACTC+GGG | - | chr1_1:4278163-4278182 | Msa0002380:intron | 50.0% | |
| TTGATGGAAGGCCCTTATCC+AGG | - | chr1_1:4278274-4278293 | Msa0002380:intron | 50.0% | |
| TGAAGCACGGACACGGAAAG+TGG | - | chr1_1:4275409-4275428 | Msa0002380:intron | 55.0% | |
| GATTAGGCGTGTCCCGGTAT+CGG | + | chr1_1:4275541-4275560 | None:intergenic | 55.0% | |
| GCAAGGACACTCCTCGGATT+AGG | + | chr1_1:4275557-4275576 | None:intergenic | 55.0% | |
| TACTGAGCAAGAGGGCGACA+AGG | - | chr1_1:4276057-4276076 | Msa0002380:intron | 55.0% | |
| ATCAGCCATGACCTGCTCAG+GGG | + | chr1_1:4276248-4276267 | None:intergenic | 55.0% | |
| CATCAGCCATGACCTGCTCA+GGG | + | chr1_1:4276249-4276268 | None:intergenic | 55.0% | |
| !! | CAGTGGGTTAGCTGGGGATT+CGG | - | chr1_1:4276914-4276933 | Msa0002380:intron | 55.0% |
| TGCTCTTTGGGTGGTAGGGA+TGG | - | chr1_1:4277938-4277957 | Msa0002380:CDS | 55.0% | |
| CCCGAGTCTAACTTAGGACC+AGG | + | chr1_1:4278166-4278185 | None:intergenic | 55.0% | |
| TGCTCTCGAGTCTTGATGGG+TGG | - | chr1_1:4278752-4278771 | Msa0002380:exon | 55.0% | |
| ! | TCCTCGGATTAGGCGTGTCC+CGG | + | chr1_1:4275547-4275566 | None:intergenic | 60.0% |
| GCAAGAGGGCGACAAGGCAA+AGG | - | chr1_1:4276063-4276082 | Msa0002380:intron | 60.0% | |
| TGAGTCTGCTTCCCCTGAGC+AGG | - | chr1_1:4276234-4276253 | Msa0002380:intron | 60.0% | |
| TGCTTCCCCTGAGCAGGTCA+TGG | - | chr1_1:4276240-4276259 | Msa0002380:intron | 60.0% | |
| GCATCAGCCATGACCTGCTC+AGG | + | chr1_1:4276250-4276269 | None:intergenic | 60.0% | |
| GCGGTTCCCTCCCAAACAAC+CGG | - | chr1_1:4276280-4276299 | Msa0002380:intron | 60.0% | |
| GTCTTCCCCGCTTCTTAGGC+TGG | + | chr1_1:4276345-4276364 | None:intergenic | 60.0% | |
| !! | GCTGGTCTTCCCCGCTTCTT+AGG | + | chr1_1:4276349-4276368 | None:intergenic | 60.0% |
| ! | GTCCTCTCCCTAGGGTGTCT+TGG | - | chr1_1:4277692-4277711 | Msa0002380:CDS | 60.0% |
| CTCCAAGACACCCTAGGGAG+AGG | + | chr1_1:4277697-4277716 | None:intergenic | 60.0% | |
| ACCGGGACACGCCTAATCCG+AGG | - | chr1_1:4275543-4275562 | Msa0002380:intron | 65.0% | |
| CGCCTGGCCAGCCTAAGAAG+CGG | - | chr1_1:4276335-4276354 | Msa0002380:intron | 65.0% | |
| GCCTGGCCAGCCTAAGAAGC+GGG | - | chr1_1:4276336-4276355 | Msa0002380:intron | 65.0% | |
| CCTGGCCAGCCTAAGAAGCG+GGG | - | chr1_1:4276337-4276356 | Msa0002380:intron | 65.0% | |
| ! | CCCCGCTTCTTAGGCTGGCC+AGG | + | chr1_1:4276340-4276359 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 4274883 | 4278887 | 4274883 | ID=Msa0002380;Name=Msa0002380 |
| chr1_1 | mRNA | 4274883 | 4278887 | 4274883 | ID=Msa0002380-mRNA-1;Parent=Msa0002380;Name=Msa0002380-mRNA-1;_AED=0.38;_eAED=0.38;_QI=119|1|1|1|1|1|3|273|275 |
| chr1_1 | exon | 4274883 | 4275214 | 4274883 | ID=Msa0002380-mRNA-1:exon:1366;Parent=Msa0002380-mRNA-1 |
| chr1_1 | exon | 4277337 | 4278000 | 4277337 | ID=Msa0002380-mRNA-1:exon:1365;Parent=Msa0002380-mRNA-1 |
| chr1_1 | exon | 4278664 | 4278887 | 4278664 | ID=Msa0002380-mRNA-1:exon:1364;Parent=Msa0002380-mRNA-1 |
| chr1_1 | five_prime_UTR | 4278769 | 4278887 | 4278769 | ID=Msa0002380-mRNA-1:five_prime_utr;Parent=Msa0002380-mRNA-1 |
| chr1_1 | CDS | 4278664 | 4278768 | 4278664 | ID=Msa0002380-mRNA-1:cds;Parent=Msa0002380-mRNA-1 |
| chr1_1 | CDS | 4277337 | 4278000 | 4277337 | ID=Msa0002380-mRNA-1:cds;Parent=Msa0002380-mRNA-1 |
| chr1_1 | CDS | 4275156 | 4275214 | 4275156 | ID=Msa0002380-mRNA-1:cds;Parent=Msa0002380-mRNA-1 |
| chr1_1 | three_prime_UTR | 4274883 | 4275155 | 4274883 | ID=Msa0002380-mRNA-1:three_prime_utr;Parent=Msa0002380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
