Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051270 | XP_024636626.1 | 95.636 | 275 | 9 | 1 | 1 | 275 | 1 | 272 | 0.0 | 540 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051270 | sp|Q8RYD1|REM16_ARATH | 56.452 | 124 | 52 | 2 | 8 | 130 | 11 | 133 | 2.64e-42 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051270 | A0A396JGK5 | 95.636 | 275 | 9 | 1 | 1 | 275 | 1 | 272 | 0.0 | 540 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0051270 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002380 | Msa0051270 | 0.950751 | 8.611226e-109 | -8.615850e-47 |
| Msa0008410 | Msa0051270 | 0.824831 | 6.522866e-54 | -8.615850e-47 |
| Msa0047980 | Msa0051270 | 0.845222 | 4.646483e-59 | -8.615850e-47 |
| Msa0051170 | Msa0051270 | 0.990324 | 4.269021e-182 | -8.615850e-47 |
| Msa0051270 | Msa0060770 | 0.801409 | 9.127676e-49 | -8.615850e-47 |
| Msa0051270 | Msa0064350 | 0.832920 | 7.176275e-56 | -8.615850e-47 |
| Msa0051270 | Msa0069330 | 0.823884 | 1.088952e-53 | -8.615850e-47 |
| Msa0051270 | Msa0072810 | 0.806316 | 8.725699e-50 | -8.615850e-47 |
| Msa0051270 | Msa0073670 | 0.819632 | 1.049003e-52 | -8.615850e-47 |
| Msa0051270 | Msa0081230 | 0.802241 | 6.158918e-49 | -8.615850e-47 |
| Msa0051270 | Msa0082280 | 0.814195 | 1.743786e-51 | -8.615850e-47 |
| Msa0051270 | Msa0094950 | 0.807288 | 5.437711e-50 | -8.615850e-47 |
| Msa0051270 | Msa0103000 | 0.807320 | 5.353167e-50 | -8.615850e-47 |
| Msa0051270 | Msa0104550 | 0.828023 | 1.131756e-54 | -8.615850e-47 |
| Msa0051270 | Msa0134130 | 0.804717 | 1.889052e-49 | -8.615850e-47 |
| Msa0051270 | Msa0145470 | 0.869756 | 2.438470e-66 | -8.615850e-47 |
| Msa0051270 | Msa0150570 | 0.811675 | 6.218346e-51 | -8.615850e-47 |
| Msa0051270 | Msa0174770 | 0.812033 | 5.195595e-51 | -8.615850e-47 |
| Msa0051270 | Msa0194480 | 0.800084 | 1.701495e-48 | -8.615850e-47 |
| Msa0051270 | Msa0199690 | 0.826965 | 2.031092e-54 | -8.615850e-47 |
| Msa0051270 | Msa0199880 | 0.814235 | 1.708568e-51 | -8.615850e-47 |
| Msa0051270 | Msa0225180 | 0.816465 | 5.454181e-52 | -8.615850e-47 |
| Msa0051270 | Msa0233350 | 0.804694 | 1.910159e-49 | -8.615850e-47 |
| Msa0051270 | Msa0236270 | 0.810358 | 1.199211e-50 | -8.615850e-47 |
| Msa0051270 | Msa0241800 | 0.809704 | 1.658507e-50 | -8.615850e-47 |
| Msa0051270 | Msa0260240 | 0.816443 | 5.516519e-52 | -8.615850e-47 |
| Msa0051270 | Msa0260280 | 0.817653 | 2.949753e-52 | -8.615850e-47 |
| Msa0051270 | Msa0260830 | 0.827851 | 1.244880e-54 | -8.615850e-47 |
| Msa0051270 | Msa0280430 | 0.813264 | 2.794864e-51 | -8.615850e-47 |
| Msa0051270 | Msa0280610 | 0.802947 | 4.404214e-49 | -8.615850e-47 |
| Msa0051270 | Msa0300120 | 0.825968 | 3.509913e-54 | -8.615850e-47 |
| Msa0051270 | Msa0304260 | 0.815382 | 9.513820e-52 | -8.615850e-47 |
| Msa0051270 | Msa0304300 | 0.808152 | 3.564363e-50 | -8.615850e-47 |
| Msa0051270 | Msa0311700 | 0.810567 | 1.081118e-50 | -8.615850e-47 |
| Msa0051270 | Msa0323560 | 0.802543 | 5.337628e-49 | -8.615850e-47 |
| Msa0051270 | Msa0328210 | 0.801022 | 1.095261e-48 | -8.615850e-47 |
| Msa0051270 | Msa0372660 | 0.808590 | 2.873481e-50 | -8.615850e-47 |
| Msa0051270 | Msa0372670 | 0.802547 | 5.326244e-49 | -8.615850e-47 |
| Msa0051270 | Msa0376690 | 0.813437 | 2.561192e-51 | -8.615850e-47 |
| Msa0051270 | Msa0392940 | 0.820742 | 5.840688e-53 | -8.615850e-47 |
| Msa0051270 | Msa0410500 | 0.801931 | 7.132400e-49 | -8.615850e-47 |
| Msa0051270 | Msa0413450 | 0.802204 | 6.268124e-49 | -8.615850e-47 |
| Msa0051270 | Msa0426330 | 0.802023 | 6.828114e-49 | -8.615850e-47 |
| Msa0051270 | Msa0464630 | 0.817884 | 2.616265e-52 | -8.615850e-47 |
| Msa0051270 | Msa0471590 | 0.832547 | 8.884519e-56 | -8.615850e-47 |
| Msa0051270 | Msa0474950 | 0.813783 | 2.148866e-51 | -8.615850e-47 |
| Msa0051270 | Msa0485120 | 0.817224 | 3.684778e-52 | -8.615850e-47 |
| Msa0051270 | Msa0497420 | 0.804727 | 1.879962e-49 | -8.615850e-47 |
| Msa0051270 | Msa0505150 | 0.800504 | 1.396939e-48 | -8.615850e-47 |
| Msa0051270 | Msa0524180 | 0.801299 | 9.614770e-49 | -8.615850e-47 |
| Msa0051270 | Msa0546360 | 0.804061 | 2.587580e-49 | -8.615850e-47 |
| Msa0051270 | Msa0552810 | 0.820651 | 6.130084e-53 | -8.615850e-47 |
| Msa0051270 | Msa0560470 | 0.847771 | 9.367744e-60 | -8.615850e-47 |
| Msa0051270 | Msa0580710 | 0.921925 | 1.910545e-88 | -8.615850e-47 |
| Msa0051270 | Msa0581070 | 0.814050 | 1.876784e-51 | -8.615850e-47 |
| Msa0051270 | Msa0590680 | 0.807906 | 4.021352e-50 | -8.615850e-47 |
| Msa0051270 | Msa0600610 | 0.811953 | 5.408537e-51 | -8.615850e-47 |
| Msa0051270 | Msa0639120 | 0.828157 | 1.050605e-54 | -8.615850e-47 |
| Msa0051270 | Msa0650920 | 0.817151 | 3.826018e-52 | -8.615850e-47 |
| Msa0051270 | Msa0663900 | 0.801026 | 1.093534e-48 | -8.615850e-47 |
| Msa0051270 | Msa0687630 | 0.824678 | 7.085574e-54 | -8.615850e-47 |
| Msa0051270 | Msa0692840 | 0.827747 | 1.318597e-54 | -8.615850e-47 |
| Msa0051270 | Msa0692940 | 0.827520 | 1.495260e-54 | -8.615850e-47 |
| Msa0051270 | Msa0709500 | 0.804186 | 2.437966e-49 | -8.615850e-47 |
| Msa0051270 | Msa0713820 | 0.804030 | 2.627426e-49 | -8.615850e-47 |
| Msa0051270 | Msa0726830 | 0.810672 | 1.026166e-50 | -8.615850e-47 |
| Msa0051270 | Msa0726860 | 0.813765 | 2.169125e-51 | -8.615850e-47 |
| Msa0051270 | Msa0727150 | 0.804326 | 2.279391e-49 | -8.615850e-47 |
| Msa0051270 | Msa0743800 | 0.803884 | 2.817071e-49 | -8.615850e-47 |
| Msa0051270 | Msa0755340 | 0.804802 | 1.813209e-49 | -8.615850e-47 |
| Msa0051270 | Msa0763070 | 0.815014 | 1.148588e-51 | -8.615850e-47 |
| Msa0051270 | Msa0787750 | 0.840115 | 1.056100e-57 | -8.615850e-47 |
| Msa0051270 | Msa0790850 | 0.801635 | 8.203719e-49 | -8.615850e-47 |
| Msa0051270 | Msa0797750 | 0.805845 | 1.096540e-49 | -8.615850e-47 |
| Msa0051270 | Msa0847080 | 0.850165 | 2.025570e-60 | -8.615850e-47 |
| Msa0051270 | Msa0863870 | 0.806369 | 8.507458e-50 | -8.615850e-47 |
| Msa0051270 | Msa0877410 | 0.806006 | 1.014214e-49 | -8.615850e-47 |
| Msa0051270 | Msa0900630 | 0.839220 | 1.805285e-57 | -8.615850e-47 |
| Msa0051270 | Msa0905550 | 0.810088 | 1.371542e-50 | -8.615850e-47 |
| Msa0051270 | Msa0926460 | 0.820187 | 7.831859e-53 | -8.615850e-47 |
| Msa0051270 | Msa0931950 | 0.805552 | 1.263554e-49 | -8.615850e-47 |
| Msa0051270 | Msa0937550 | 0.810643 | 1.041109e-50 | -8.615850e-47 |
| Msa0051270 | Msa0965860 | 0.810544 | 1.093635e-50 | -8.615850e-47 |
| Msa0051270 | Msa0967370 | 0.817354 | 3.445087e-52 | -8.615850e-47 |
| Msa0051270 | Msa0976310 | 0.817819 | 2.705396e-52 | -8.615850e-47 |
| Msa0051270 | Msa1000690 | 0.824463 | 7.963700e-54 | -8.615850e-47 |
| Msa0051270 | Msa1041530 | 0.812120 | 4.974101e-51 | -8.615850e-47 |
| Msa0051270 | Msa1091530 | 0.818096 | 2.342161e-52 | -8.615850e-47 |
| Msa0051270 | Msa1100720 | 0.809823 | 1.564165e-50 | -8.615850e-47 |
| Msa0051270 | Msa1101600 | 0.801538 | 8.588220e-49 | -8.615850e-47 |
| Msa0051270 | Msa1119200 | 0.807790 | 4.256478e-50 | -8.615850e-47 |
| Msa0051270 | Msa1125760 | 0.804288 | 2.321157e-49 | -8.615850e-47 |
| Msa0051270 | Msa1126510 | 0.828698 | 7.778455e-55 | -8.615850e-47 |
| Msa0051270 | Msa1126770 | 0.825280 | 5.108520e-54 | -8.615850e-47 |
| Msa0051270 | Msa1127890 | 0.800986 | 1.114146e-48 | -8.615850e-47 |
| Msa0051270 | Msa1134110 | 0.808360 | 3.218675e-50 | -8.615850e-47 |
| Msa0051270 | Msa1165870 | 0.809540 | 1.799018e-50 | -8.615850e-47 |
| Msa0051270 | Msa1166330 | 0.810160 | 1.323396e-50 | -8.615850e-47 |
| Msa0051270 | Msa1166340 | 0.804889 | 1.739461e-49 | -8.615850e-47 |
| Msa0051270 | Msa1166860 | 0.810311 | 1.227480e-50 | -8.615850e-47 |
| Msa0051270 | Msa1171360 | 0.804731 | 1.876323e-49 | -8.615850e-47 |
| Msa0051270 | Msa1184370 | 0.810440 | 1.151597e-50 | -8.615850e-47 |
| Msa0051270 | Msa1201830 | 0.801442 | 8.985017e-49 | -8.615850e-47 |
| Msa0051270 | Msa1210810 | 0.802707 | 4.936680e-49 | -8.615850e-47 |
| Msa0051270 | Msa1217660 | 0.811201 | 7.882275e-51 | -8.615850e-47 |
| Msa0051270 | Msa1227690 | 0.806925 | 6.492555e-50 | -8.615850e-47 |
| Msa0051270 | Msa1235630 | 0.810857 | 9.354479e-51 | -8.615850e-47 |
| Msa0051270 | Msa1283170 | 0.807581 | 4.713364e-50 | -8.615850e-47 |
| Msa0051270 | Msa1304820 | 0.811374 | 7.227163e-51 | -8.615850e-47 |
| Msa0051270 | Msa1307950 | 0.828751 | 7.554321e-55 | -8.615850e-47 |
| Msa0051270 | Msa1315870 | 0.820813 | 5.623919e-53 | -8.615850e-47 |
| Msa0051270 | Msa1316830 | 0.808939 | 2.420615e-50 | -8.615850e-47 |
| Msa0051270 | Msa1320740 | 0.810444 | 1.149221e-50 | -8.615850e-47 |
| Msa0051270 | Msa1321630 | 0.800884 | 1.168872e-48 | -8.615850e-47 |
| Msa0051270 | Msa1335940 | 0.803442 | 3.478589e-49 | -8.615850e-47 |
| Msa0051270 | Msa1340020 | 0.802248 | 6.138726e-49 | -8.615850e-47 |
| Msa0051270 | Msa1344850 | 0.813248 | 2.817843e-51 | -8.615850e-47 |
| Msa0051270 | Msa1365150 | 0.811473 | 6.879150e-51 | -8.615850e-47 |
| Msa0051270 | Msa1367880 | 0.810730 | 9.969911e-51 | -8.615850e-47 |
| Msa0051270 | Msa1370860 | 0.819717 | 1.002992e-52 | -8.615850e-47 |
| Msa0051270 | Msa1397940 | 0.815977 | 7.012622e-52 | -8.615850e-47 |
| Msa0051270 | Msa1404190 | 0.822804 | 1.947511e-53 | -8.615850e-47 |
| Msa0051270 | Msa1416390 | 0.810108 | 1.357756e-50 | -8.615850e-47 |
| Msa0051270 | Msa1431040 | 0.821948 | 3.078075e-53 | -8.615850e-47 |
| Msa0051270 | Msa1461280 | 0.808634 | 2.812610e-50 | -8.615850e-47 |
| Msa0051270 | Msa1465080 | 0.802348 | 5.855808e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051270 | MtrunA17_Chr1g0154241 | 95.636 | 275 | 9 | 1 | 1 | 275 | 1 | 272 | 0.0 | 540 |
| Msa0051270 | MtrunA17_Chr1g0154211 | 64.794 | 267 | 85 | 3 | 5 | 268 | 6 | 266 | 3.51e-118 | 344 |
| Msa0051270 | MtrunA17_Chr1g0154101 | 62.626 | 297 | 63 | 5 | 6 | 256 | 168 | 462 | 4.08e-114 | 347 |
| Msa0051270 | MtrunA17_Chr1g0154101 | 76.101 | 159 | 37 | 1 | 2 | 159 | 5 | 163 | 1.68e-81 | 261 |
| Msa0051270 | MtrunA17_Chr1g0154251 | 64.368 | 261 | 79 | 5 | 2 | 249 | 7 | 266 | 3.29e-110 | 327 |
| Msa0051270 | MtrunA17_Chr1g0154111 | 60.741 | 270 | 76 | 5 | 5 | 272 | 9 | 250 | 2.79e-101 | 307 |
| Msa0051270 | MtrunA17_Chr1g0154111 | 56.710 | 231 | 65 | 8 | 36 | 257 | 368 | 572 | 2.83e-68 | 222 |
| Msa0051270 | MtrunA17_Chr1g0154191 | 61.686 | 261 | 56 | 6 | 1 | 256 | 1 | 222 | 5.76e-98 | 291 |
| Msa0051270 | MtrunA17_Chr1g0154171 | 59.922 | 257 | 62 | 5 | 5 | 258 | 6 | 224 | 6.16e-90 | 271 |
| Msa0051270 | MtrunA17_Chr1g0154131 | 54.753 | 263 | 55 | 6 | 2 | 263 | 164 | 363 | 6.06e-82 | 254 |
| Msa0051270 | MtrunA17_Chr1g0154131 | 74.684 | 158 | 40 | 0 | 3 | 160 | 7 | 164 | 7.94e-81 | 251 |
| Msa0051270 | MtrunA17_Chr1g0154161 | 75.000 | 152 | 35 | 2 | 5 | 155 | 13 | 162 | 1.13e-74 | 231 |
| Msa0051270 | MtrunA17_Chr1g0154151 | 55.085 | 236 | 56 | 6 | 36 | 268 | 19 | 207 | 8.89e-73 | 226 |
| Msa0051270 | MtrunA17_Chr1g0154071 | 74.046 | 131 | 34 | 0 | 6 | 136 | 12 | 142 | 2.59e-65 | 211 |
| Msa0051270 | MtrunA17_Chr1g0154071 | 66.667 | 147 | 48 | 1 | 10 | 156 | 145 | 290 | 2.75e-62 | 204 |
| Msa0051270 | MtrunA17_Chr1g0154041 | 36.275 | 102 | 64 | 1 | 21 | 122 | 15 | 115 | 3.25e-16 | 78.2 |
| Msa0051270 | MtrunA17_Chr3g0131891 | 34.021 | 97 | 63 | 1 | 20 | 115 | 17 | 113 | 1.19e-13 | 70.1 |
| Msa0051270 | MtrunA17_Chr7g0233561 | 35.106 | 94 | 61 | 0 | 22 | 115 | 19 | 112 | 3.17e-13 | 68.6 |
| Msa0051270 | MtrunA17_Chr7g0233571 | 34.375 | 96 | 62 | 1 | 21 | 115 | 9 | 104 | 1.08e-12 | 65.9 |
| Msa0051270 | MtrunA17_Chr7g0233531 | 37.975 | 79 | 49 | 0 | 37 | 115 | 2 | 80 | 7.86e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051270 | AT4G33280.2 | 56.452 | 124 | 52 | 2 | 8 | 130 | 11 | 133 | 9.71e-44 | 150 |
| Msa0051270 | AT4G33280.1 | 56.452 | 124 | 52 | 2 | 8 | 130 | 11 | 133 | 2.68e-43 | 150 |
| Msa0051270 | AT4G33280.3 | 56.452 | 124 | 52 | 2 | 8 | 130 | 11 | 133 | 6.99e-43 | 151 |
| Msa0051270 | AT4G34400.2 | 37.113 | 97 | 60 | 1 | 22 | 118 | 17 | 112 | 2.10e-17 | 81.6 |
| Msa0051270 | AT4G34400.1 | 37.113 | 97 | 60 | 1 | 22 | 118 | 17 | 112 | 2.10e-17 | 81.6 |
| Msa0051270 | AT3G18990.1 | 34.951 | 103 | 58 | 1 | 32 | 125 | 17 | 119 | 1.09e-13 | 70.5 |
| Msa0051270 | AT3G18990.2 | 34.951 | 103 | 58 | 1 | 32 | 125 | 17 | 119 | 1.18e-13 | 70.5 |
| Msa0051270 | AT3G06220.1 | 32.584 | 89 | 59 | 1 | 22 | 110 | 11 | 98 | 1.65e-13 | 67.4 |
| Msa0051270 | AT3G06160.1 | 34.831 | 89 | 57 | 1 | 22 | 110 | 26 | 113 | 5.69e-13 | 68.6 |
| Msa0051270 | AT3G06160.5 | 34.831 | 89 | 57 | 1 | 22 | 110 | 11 | 98 | 8.10e-13 | 67.8 |
| Msa0051270 | AT3G06160.4 | 34.831 | 89 | 57 | 1 | 22 | 110 | 11 | 98 | 8.10e-13 | 67.8 |
| Msa0051270 | AT3G06160.3 | 34.831 | 89 | 57 | 1 | 22 | 110 | 11 | 98 | 8.10e-13 | 67.8 |
| Msa0051270 | AT3G06160.2 | 34.831 | 89 | 57 | 1 | 22 | 110 | 70 | 157 | 9.89e-13 | 67.8 |
| Msa0051270 | AT5G66980.1 | 41.463 | 82 | 44 | 1 | 33 | 110 | 21 | 102 | 1.60e-12 | 67.0 |
| Msa0051270 | AT5G60130.5 | 38.202 | 89 | 50 | 2 | 35 | 118 | 27 | 115 | 6.88e-12 | 64.3 |
| Msa0051270 | AT5G60130.3 | 38.202 | 89 | 50 | 2 | 35 | 118 | 1 | 89 | 1.35e-11 | 63.9 |
| Msa0051270 | AT5G60130.4 | 38.202 | 89 | 50 | 2 | 35 | 118 | 24 | 112 | 1.88e-11 | 63.9 |
| Msa0051270 | AT5G60130.1 | 38.202 | 89 | 50 | 2 | 35 | 118 | 27 | 115 | 2.00e-11 | 63.9 |
| Msa0051270 | AT5G60130.2 | 38.202 | 89 | 50 | 2 | 35 | 118 | 27 | 115 | 2.22e-11 | 63.5 |
Find 79 sgRNAs with CRISPR-Local
Find 275 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTCCACTAGGACCTTTA+AGG | 0.183323 | 1_2:+5379297 | None:intergenic |
| CCTGAAAATGTGAACCTTAA+AGG | 0.211774 | 1_2:-5379311 | Msa0051270:CDS |
| TGAAATGGATGAACTGAAAA+TGG | 0.224125 | 1_2:+5380079 | None:intergenic |
| TTTGTCTCTCTGTTTCAAAA+TGG | 0.253518 | 1_2:-5380142 | Msa0051270:exon |
| GCTGGTCTTCCCCGCTTCTT+AGG | 0.270434 | 1_2:+5378777 | None:intergenic |
| AGTGGAGTTGTGTGGAATAT+AGG | 0.300231 | 1_2:-5379284 | Msa0051270:CDS |
| AACAATATATTGCCTAGTTA+AGG | 0.302218 | 1_2:-5376256 | Msa0051270:three_prime_UTR |
| AGGAGTTTGACACCATTTCT+AGG | 0.335680 | 1_2:+5376312 | None:intergenic |
| CATGGGAGGAAGACATTTAC+TGG | 0.340818 | 1_2:-5380104 | Msa0051270:CDS |
| AACTTCGTTAACAGGCTTCT+TGG | 0.341598 | 1_2:+5378812 | None:intergenic |
| CCAGGCGTAACTTCGTTAAC+AGG | 0.352395 | 1_2:+5378804 | None:intergenic |
| GTCTTCCCCGCTTCTTAGGC+TGG | 0.353235 | 1_2:+5378781 | None:intergenic |
| TTATGTTCCTTCAGAATAGA+AGG | 0.360823 | 1_2:-5376488 | Msa0051270:three_prime_UTR |
| AATGCGGTTCTGAGAAATTT+CGG | 0.363117 | 1_2:-5378986 | Msa0051270:CDS |
| CCCCGCTTCTTAGGCTGGCC+AGG | 0.381562 | 1_2:+5378786 | None:intergenic |
| CCAGCAAAATCAGCTACTTC+TGG | 0.385623 | 1_2:-5378759 | Msa0051270:CDS |
| TTGTCTCTCTGTTTCAAAAT+GGG | 0.414043 | 1_2:-5380141 | Msa0051270:exon |
| TCAATGCTCTCGAGTCTTGA+TGG | 0.415924 | 1_2:-5376372 | Msa0051270:three_prime_UTR |
| ACAATATATTGCCTAGTTAA+GGG | 0.416180 | 1_2:-5376255 | Msa0051270:three_prime_UTR |
| GGTGGAAGCTGACTTTGTTT+CGG | 0.419026 | 1_2:-5376519 | Msa0051270:exon |
| GTGGAGTTGTGTGGAATATA+GGG | 0.421556 | 1_2:-5379283 | Msa0051270:CDS |
| TTTGTTAGAAAATGTGGAAA+AGG | 0.421612 | 1_2:-5379092 | Msa0051270:CDS |
| GCATCAGCCATGACCTGCTC+AGG | 0.424246 | 1_2:+5378876 | None:intergenic |
| TGAGTCTGCTTCCCCTGAGC+AGG | 0.449413 | 1_2:-5378889 | Msa0051270:CDS |
| GCGAGAAAGCAATTGTTGAT+TGG | 0.450466 | 1_2:-5378737 | Msa0051270:CDS |
| TGGGAAGTGTGAACCGATCA+TGG | 0.456499 | 1_2:-5380122 | Msa0051270:CDS |
| TGCTTCCCCTGAGCAGGTCA+TGG | 0.458901 | 1_2:-5378883 | Msa0051270:CDS |
| ACAAAGAAATGGTTCAAAGT+TGG | 0.458957 | 1_2:+5380160 | None:intergenic |
| GAAGTCAACACTGCTTCTAA+TGG | 0.464985 | 1_2:-5379017 | Msa0051270:CDS |
| GCCTGGCCAGCCTAAGAAGC+GGG | 0.466869 | 1_2:-5378787 | Msa0051270:CDS |
| TATATCACATAAACTATTTG+AGG | 0.467509 | 1_2:+5376292 | None:intergenic |
| TGCGAAGAAATTGAGTGAAA+TGG | 0.470492 | 1_2:+5380064 | None:intergenic |
| GAAACAGAGAGACAAAGAAA+TGG | 0.473247 | 1_2:+5380149 | None:intergenic |
| AGAGCCTGCTTTCTCGCATA+AGG | 0.473371 | 1_2:+5379118 | None:intergenic |
| CCAACCGTTTGTGAAGTAAA+CGG | 0.478109 | 1_2:+5379241 | None:intergenic |
| CGAGAAAGCAATTGTTGATT+GGG | 0.485091 | 1_2:-5378736 | Msa0051270:CDS |
| GCGGTTCCCTCCCAAACAAC+CGG | 0.485847 | 1_2:-5378843 | Msa0051270:CDS |
| TCTTACTTTGTTAGAAAATG+TGG | 0.486876 | 1_2:-5379098 | Msa0051270:CDS |
| CATGGACAAACTCCTAGAAA+TGG | 0.504917 | 1_2:-5376324 | Msa0051270:three_prime_UTR |
| GACACCGTTTACTTCACAAA+CGG | 0.514012 | 1_2:-5379245 | Msa0051270:CDS |
| TACTTCACAAACGGTTGGCA+AGG | 0.517034 | 1_2:-5379236 | Msa0051270:CDS |
| CACATAATCAACCCTTAACT+AGG | 0.517999 | 1_2:+5376244 | None:intergenic |
| CAATGCTCTCGAGTCTTGAT+GGG | 0.526601 | 1_2:-5376371 | Msa0051270:three_prime_UTR |
| AATAAAAGAACGGAACAGAA+AGG | 0.528722 | 1_2:+5380227 | None:intergenic |
| CCTGTTAACGAAGTTACGCC+TGG | 0.535294 | 1_2:-5378804 | Msa0051270:CDS |
| GAAATGGATGAACTGAAAAT+GGG | 0.537991 | 1_2:+5380080 | None:intergenic |
| AACATAACCTTCTATTCTGA+AGG | 0.545583 | 1_2:+5376481 | None:intergenic |
| AATGAAAAGACTTCTAATGC+TGG | 0.546042 | 1_2:-5378915 | Msa0051270:CDS |
| ATTTCTTAGTAGTAGATGCA+TGG | 0.551338 | 1_2:-5376342 | Msa0051270:three_prime_UTR |
| CCGTTTACTTCACAAACGGT+TGG | 0.558722 | 1_2:-5379241 | Msa0051270:CDS |
| AGGCAATATATTGTTCTCAA+AGG | 0.561581 | 1_2:+5376264 | None:intergenic |
| ATAAAAGAACGGAACAGAAA+GGG | 0.562420 | 1_2:+5380228 | None:intergenic |
| CATCAGCCATGACCTGCTCA+GGG | 0.563227 | 1_2:+5378877 | None:intergenic |
| CGCCTGGCCAGCCTAAGAAG+CGG | 0.563693 | 1_2:-5378788 | Msa0051270:CDS |
| GAAAGCAATTGTTGATTGGG+TGG | 0.568458 | 1_2:-5378733 | Msa0051270:CDS |
| AAATGTCTTCCTCCCATGAT+CGG | 0.572099 | 1_2:+5380109 | None:intergenic |
| CGTGAAGATCGTGAAATTGA+AGG | 0.574504 | 1_2:-5376540 | Msa0051270:CDS |
| ATATTCCACACAACTCCACT+AGG | 0.578077 | 1_2:+5379287 | None:intergenic |
| GATAGCACAAACTATTCTGA+AGG | 0.583811 | 1_2:+5376418 | None:intergenic |
| TGCTCTCGAGTCTTGATGGG+TGG | 0.586623 | 1_2:-5376368 | Msa0051270:three_prime_UTR |
| GAGACCTTATGCGAGAAAGC+AGG | 0.587625 | 1_2:-5379122 | Msa0051270:CDS |
| GCAAGAGGGCGACAAGGCAA+AGG | 0.587651 | 1_2:-5379060 | Msa0051270:CDS |
| GGGAAGTGTGAACCGATCAT+GGG | 0.593667 | 1_2:-5380121 | Msa0051270:CDS |
| GGCTGATGCAGTCACTATTG+CGG | 0.596142 | 1_2:-5378862 | Msa0051270:CDS |
| TACTGAGCAAGAGGGCGACA+AGG | 0.599125 | 1_2:-5379066 | Msa0051270:CDS |
| GAACGGAACAGAAAGGGTAC+AGG | 0.599703 | 1_2:+5380234 | None:intergenic |
| GTGAACCTTAAAGGTCCTAG+TGG | 0.609317 | 1_2:-5379302 | Msa0051270:CDS |
| AAAAGGTCATACTGAGCAAG+AGG | 0.615156 | 1_2:-5379075 | Msa0051270:CDS |
| AAGGTCCTAGTGGAGTTGTG+TGG | 0.624686 | 1_2:-5379292 | Msa0051270:CDS |
| GCTTGTAGCAAGGAAAACTC+AGG | 0.631925 | 1_2:-5378711 | Msa0051270:intron |
| TGTTACAGTCAATAAAAGAA+CGG | 0.638014 | 1_2:+5380217 | None:intergenic |
| CCTGGCCAGCCTAAGAAGCG+GGG | 0.640983 | 1_2:-5378786 | Msa0051270:CDS |
| GTCAACACTGCTTCTAATGG+CGG | 0.645750 | 1_2:-5379014 | Msa0051270:CDS |
| AAGTGTGAACCGATCATGGG+AGG | 0.649028 | 1_2:-5380118 | Msa0051270:CDS |
| TGATTGGGTGGCTTGTAGCA+AGG | 0.654638 | 1_2:-5378721 | Msa0051270:CDS |
| GAAGATCGTGAAATTGAAGG+TGG | 0.655920 | 1_2:-5376537 | Msa0051270:CDS |
| TCTAATGGCGGTGTTGAATG+CGG | 0.661026 | 1_2:-5379002 | Msa0051270:CDS |
| AAAGGTCATACTGAGCAAGA+GGG | 0.680883 | 1_2:-5379074 | Msa0051270:CDS |
| ATCAGCCATGACCTGCTCAG+GGG | 0.726483 | 1_2:+5378878 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATACAAAAATTAAAAAGT+GGG | + | chr1_2:5376619-5376638 | None:intergenic | 15.0% |
| !! | AAGATACAAAAATTAAAAAG+TGG | + | chr1_2:5376620-5376639 | None:intergenic | 15.0% |
| !! | GTATATAAATATAATAAGCA+TGG | + | chr1_2:5376735-5376754 | None:intergenic | 15.0% |
| !!! | TGATTTTCTCAAATTATTAA+TGG | + | chr1_2:5376826-5376845 | None:intergenic | 15.0% |
| !! | TTCAATGTAATTATATGTAT+TGG | - | chr1_2:5376859-5376878 | Msa0051270:intron | 15.0% |
| !!! | TTTGAAGTTTTAATATTTCA+TGG | - | chr1_2:5377351-5377370 | Msa0051270:intron | 15.0% |
| !!! | ATTTTGACAACAAAAAAAAA+AGG | + | chr1_2:5378161-5378180 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAATGCAAACA+TGG | - | chr1_2:5379822-5379841 | Msa0051270:intron | 15.0% |
| !!! | AAATTGTCTGAAAATGTTTT+AGG | + | chr1_2:5377153-5377172 | None:intergenic | 20.0% |
| !!! | ATGTATCAACTTAATTTTGA+GGG | - | chr1_2:5378255-5378274 | Msa0051270:intron | 20.0% |
| !!! | TATTTTAATGATGGTCAAAA+AGG | + | chr1_2:5378457-5378476 | None:intergenic | 20.0% |
| !! | CAAAACATATAGAAATTGAT+CGG | + | chr1_2:5378721-5378740 | None:intergenic | 20.0% |
| !! | TATATCACATAAACTATTTG+AGG | + | chr1_2:5380208-5380227 | None:intergenic | 20.0% |
| ! | TGTTACAGTCAATAAAAGAA+CGG | + | chr1_2:5376283-5376302 | None:intergenic | 25.0% |
| !! | TTTTTGTGTTATCAAAGGAA+AGG | + | chr1_2:5376313-5376332 | None:intergenic | 25.0% |
| ! | AATATGAACACTTAAGAACA+TGG | + | chr1_2:5376511-5376530 | None:intergenic | 25.0% |
| ! | TGTGTATATAATATGAAGCA+CGG | - | chr1_2:5376770-5376789 | Msa0051270:intron | 25.0% |
| ! | TAGTGTATATATAATGGCTT+GGG | - | chr1_2:5376955-5376974 | Msa0051270:intron | 25.0% |
| ! | TGGATTAAAGAAAGTGAATA+AGG | - | chr1_2:5377049-5377068 | Msa0051270:intron | 25.0% |
| ! | ATGTTGATACATTTATTTGC+AGG | - | chr1_2:5377122-5377141 | Msa0051270:intron | 25.0% |
| ! | TCTTACTTTGTTAGAAAATG+TGG | - | chr1_2:5377399-5377418 | Msa0051270:intron | 25.0% |
| ! | TTTGTTAGAAAATGTGGAAA+AGG | - | chr1_2:5377405-5377424 | Msa0051270:intron | 25.0% |
| !! | TTTTCATTGGTATTTTCGAA+AGG | + | chr1_2:5377570-5377589 | None:intergenic | 25.0% |
| !! | TTGTTTTCCGGTTTTTATAT+TGG | - | chr1_2:5377972-5377991 | Msa0051270:intron | 25.0% |
| ! | CTTATGACCAATATAAAAAC+CGG | + | chr1_2:5377982-5378001 | None:intergenic | 25.0% |
| !! | TTTTATATTGGTCATAAGCA+TGG | - | chr1_2:5377984-5378003 | Msa0051270:intron | 25.0% |
| ! | TTGAATCATGAATTCTTATG+AGG | - | chr1_2:5378222-5378241 | Msa0051270:intron | 25.0% |
| !! | GATGTATCAACTTAATTTTG+AGG | - | chr1_2:5378254-5378273 | Msa0051270:intron | 25.0% |
| !!! | GAATGCTAGTATTTTAATGA+TGG | + | chr1_2:5378466-5378485 | None:intergenic | 25.0% |
| ! | AGCATTCCATTTCTAATTAT+TGG | - | chr1_2:5378479-5378498 | Msa0051270:intron | 25.0% |
| ! | GAGAAACCAATAATTAGAAA+TGG | + | chr1_2:5378488-5378507 | None:intergenic | 25.0% |
| ! | TGAGAATAAATTTAGACCTA+TGG | + | chr1_2:5378881-5378900 | None:intergenic | 25.0% |
| ! | TTGATTTATTTGGTACACAT+AGG | + | chr1_2:5379189-5379208 | None:intergenic | 25.0% |
| !! | AGCATTTATTGATGGTTAAA+AGG | + | chr1_2:5379354-5379373 | None:intergenic | 25.0% |
| !! | TTCTCTTTAATTTCATGCTT+CGG | - | chr1_2:5379398-5379417 | Msa0051270:intron | 25.0% |
| !! | ATAAGATTTGATTCGTGATT+CGG | - | chr1_2:5379471-5379490 | Msa0051270:intron | 25.0% |
| ! | AGGTAACAAAAATTTGGAAA+AGG | + | chr1_2:5379620-5379639 | None:intergenic | 25.0% |
| ! | ATTGGTAGGTAACAAAAATT+TGG | + | chr1_2:5379626-5379645 | None:intergenic | 25.0% |
| ! | TGAGGAATGAAGAAAAAAAA+TGG | + | chr1_2:5379902-5379921 | None:intergenic | 25.0% |
| ! | TGTGAAAAAAAAAAGAGAGA+AGG | - | chr1_2:5380043-5380062 | Msa0051270:CDS | 25.0% |
| ! | AACAATATATTGCCTAGTTA+AGG | - | chr1_2:5380241-5380260 | Msa0051270:five_prime_UTR | 25.0% |
| ATAAAAGAACGGAACAGAAA+GGG | + | chr1_2:5376272-5376291 | None:intergenic | 30.0% | |
| AATAAAAGAACGGAACAGAA+AGG | + | chr1_2:5376273-5376292 | None:intergenic | 30.0% | |
| ! | GAAGCTTTTTGTGTTATCAA+AGG | + | chr1_2:5376318-5376337 | None:intergenic | 30.0% |
| ACAAAGAAATGGTTCAAAGT+TGG | + | chr1_2:5376340-5376359 | None:intergenic | 30.0% | |
| TTTGTCTCTCTGTTTCAAAA+TGG | - | chr1_2:5376355-5376374 | Msa0051270:three_prime_UTR | 30.0% | |
| TTGTCTCTCTGTTTCAAAAT+GGG | - | chr1_2:5376356-5376375 | Msa0051270:three_prime_UTR | 30.0% | |
| GAAATGGATGAACTGAAAAT+GGG | + | chr1_2:5376420-5376439 | None:intergenic | 30.0% | |
| TGAAATGGATGAACTGAAAA+TGG | + | chr1_2:5376421-5376440 | None:intergenic | 30.0% | |
| TATATATACACTACGAAGCA+AGG | + | chr1_2:5376948-5376967 | None:intergenic | 30.0% | |
| GCTTCGTAGTGTATATATAA+TGG | - | chr1_2:5376949-5376968 | Msa0051270:intron | 30.0% | |
| GTAGTGTATATATAATGGCT+TGG | - | chr1_2:5376954-5376973 | Msa0051270:intron | 30.0% | |
| !!! | CTTTTGAGACAATATGTTCA+TGG | - | chr1_2:5377003-5377022 | Msa0051270:intron | 30.0% |
| !!! | CTCCTTTTTTTCAAGTACAA+TGG | - | chr1_2:5377318-5377337 | Msa0051270:intron | 30.0% |
| ! | AGCATTAGAAGTCTTTTCAT+TGG | + | chr1_2:5377583-5377602 | None:intergenic | 30.0% |
| AATGAAAAGACTTCTAATGC+TGG | - | chr1_2:5377582-5377601 | Msa0051270:intron | 30.0% | |
| ATAAAAACCGGAAAACAAAC+TGG | + | chr1_2:5377970-5377989 | None:intergenic | 30.0% | |
| ! | TTCAGTTTAGAATCGAATCA+AGG | + | chr1_2:5378042-5378061 | None:intergenic | 30.0% |
| TGACAACAAAAAAAAAAGGC+TGG | + | chr1_2:5378157-5378176 | None:intergenic | 30.0% | |
| ATCAAATGACAAAAGAAACG+TGG | + | chr1_2:5378195-5378214 | None:intergenic | 30.0% | |
| !! | TTTCTTGCTTCTGTTATTTC+TGG | - | chr1_2:5378513-5378532 | Msa0051270:intron | 30.0% |
| ATTAAAGAAGAGTTGGACAA+TGG | + | chr1_2:5378692-5378711 | None:intergenic | 30.0% | |
| GATTTGAAGATACAATGTGA+AGG | + | chr1_2:5378814-5378833 | None:intergenic | 30.0% | |
| ! | TAGCAACTCAATTTTTGCAT+AGG | - | chr1_2:5378941-5378960 | Msa0051270:CDS | 30.0% |
| ! | TACATTGATGTTGATTATGC+AGG | + | chr1_2:5379009-5379028 | None:intergenic | 30.0% |
| AGAGGACTCTTATCTAAATT+AGG | + | chr1_2:5379054-5379073 | None:intergenic | 30.0% | |
| ATGGTGAGTCAATTCATTAA+TGG | + | chr1_2:5379141-5379160 | None:intergenic | 30.0% | |
| ! | CACATTCCATTTGCAATTTT+TGG | - | chr1_2:5379374-5379393 | Msa0051270:intron | 30.0% |
| GAGAAACCAAAAATTGCAAA+TGG | + | chr1_2:5379383-5379402 | None:intergenic | 30.0% | |
| ATGCCTTATCTTACATTGAA+TGG | - | chr1_2:5379777-5379796 | Msa0051270:intron | 30.0% | |
| TGCCTTATCTTACATTGAAT+GGG | - | chr1_2:5379778-5379797 | Msa0051270:intron | 30.0% | |
| TCTTCATTCCTCATAATTTC+AGG | - | chr1_2:5379909-5379928 | Msa0051270:intron | 30.0% | |
| CTTCATTCCTCATAATTTCA+GGG | - | chr1_2:5379910-5379929 | Msa0051270:intron | 30.0% | |
| TTATGTTCCTTCAGAATAGA+AGG | - | chr1_2:5380009-5380028 | Msa0051270:intron | 30.0% | |
| AACATAACCTTCTATTCTGA+AGG | + | chr1_2:5380019-5380038 | None:intergenic | 30.0% | |
| ATTTCTTAGTAGTAGATGCA+TGG | - | chr1_2:5380155-5380174 | Msa0051270:five_prime_UTR | 30.0% | |
| AGGCAATATATTGTTCTCAA+AGG | + | chr1_2:5380236-5380255 | None:intergenic | 30.0% | |
| GAAACAGAGAGACAAAGAAA+TGG | + | chr1_2:5376351-5376370 | None:intergenic | 35.0% | |
| TGCGAAGAAATTGAGTGAAA+TGG | + | chr1_2:5376436-5376455 | None:intergenic | 35.0% | |
| TGGAAGGAAAGAAGAATGAA+GGG | + | chr1_2:5376491-5376510 | None:intergenic | 35.0% | |
| ATGGAAGGAAAGAAGAATGA+AGG | + | chr1_2:5376492-5376511 | None:intergenic | 35.0% | |
| TGAACACTTAAGAACATGGA+AGG | + | chr1_2:5376507-5376526 | None:intergenic | 35.0% | |
| TATAATATGAAGCACGGACA+CGG | - | chr1_2:5376776-5376795 | Msa0051270:intron | 35.0% | |
| !!! | CCTTTAAGGTTCACATTTTC+AGG | + | chr1_2:5377189-5377208 | None:intergenic | 35.0% |
| CCTGAAAATGTGAACCTTAA+AGG | - | chr1_2:5377186-5377205 | Msa0051270:intron | 35.0% | |
| CGCCATTGTACTTGAAAAAA+AGG | + | chr1_2:5377323-5377342 | None:intergenic | 35.0% | |
| !! | AATGCGGTTCTGAGAAATTT+CGG | - | chr1_2:5377511-5377530 | Msa0051270:intron | 35.0% |
| !! | TTTTCGAAAGGTACAGCTAA+TGG | + | chr1_2:5377558-5377577 | None:intergenic | 35.0% |
| ! | CGAGAAAGCAATTGTTGATT+GGG | - | chr1_2:5377761-5377780 | Msa0051270:intron | 35.0% |
| ACTAGAGATTCGTATCAACT+GGG | + | chr1_2:5378065-5378084 | None:intergenic | 35.0% | |
| AATGACAAAAGAAACGTGGT+TGG | + | chr1_2:5378191-5378210 | None:intergenic | 35.0% | |
| GGGTTTCCTTTCAACTAATT+CGG | + | chr1_2:5378562-5378581 | None:intergenic | 35.0% | |
| !! | TTAGCAGAAGTGTTGGTAAA+GGG | + | chr1_2:5378635-5378654 | None:intergenic | 35.0% |
| !! | ATTAGCAGAAGTGTTGGTAA+AGG | + | chr1_2:5378636-5378655 | None:intergenic | 35.0% |
| GCACTTCATTAAAGAAGAGT+TGG | + | chr1_2:5378699-5378718 | None:intergenic | 35.0% | |
| ATAATCCTATTCAGCATGAC+AGG | + | chr1_2:5378745-5378764 | None:intergenic | 35.0% | |
| ATCATACAACACAGCTTCAT+TGG | - | chr1_2:5378787-5378806 | Msa0051270:CDS | 35.0% | |
| AAATTTAGACCTATGGCACA+AGG | + | chr1_2:5378874-5378893 | None:intergenic | 35.0% | |
| ! | GAGTAAGAAGCATAGTTTAG+TGG | + | chr1_2:5378917-5378936 | None:intergenic | 35.0% |
| ! | GCAAAAATTGAGTTGCTAGA+AGG | + | chr1_2:5378939-5378958 | None:intergenic | 35.0% |
| ATTAGGAGGAAGACTAACTA+TGG | + | chr1_2:5379037-5379056 | None:intergenic | 35.0% | |
| GGACTCTTATCTAAATTAGG+AGG | + | chr1_2:5379051-5379070 | None:intergenic | 35.0% | |
| TCAATTCATTAATGGTCCGA+GGG | + | chr1_2:5379133-5379152 | None:intergenic | 35.0% | |
| ! | AGGGGGGAAATTGATTTATT+TGG | + | chr1_2:5379199-5379218 | None:intergenic | 35.0% |
| TCAAAGCTTGTCTTGTGATT+GGG | - | chr1_2:5379249-5379268 | Msa0051270:CDS | 35.0% | |
| GGTTAAAAGGATATGCAGAA+GGG | + | chr1_2:5379341-5379360 | None:intergenic | 35.0% | |
| TGGTTAAAAGGATATGCAGA+AGG | + | chr1_2:5379342-5379361 | None:intergenic | 35.0% | |
| GGAATGTGAGCATTTATTGA+TGG | + | chr1_2:5379362-5379381 | None:intergenic | 35.0% | |
| ! | TTTCATGCTTCGGTTATTTC+TGG | - | chr1_2:5379408-5379427 | Msa0051270:intron | 35.0% |
| ! | TGATTCGTGATTCGGAAAAT+AGG | - | chr1_2:5379479-5379498 | Msa0051270:intron | 35.0% |
| !! | GAATATCGATTTGATAACCC+TGG | - | chr1_2:5379520-5379539 | Msa0051270:intron | 35.0% |
| GTTACCTACCAATATGTTGA+TGG | - | chr1_2:5379633-5379652 | Msa0051270:intron | 35.0% | |
| TCTGTTTCATACCTGGATAA+GGG | + | chr1_2:5379663-5379682 | None:intergenic | 35.0% | |
| ATCTGTTTCATACCTGGATA+AGG | + | chr1_2:5379664-5379683 | None:intergenic | 35.0% | |
| GCCTTATCTTACATTGAATG+GGG | - | chr1_2:5379779-5379798 | Msa0051270:intron | 35.0% | |
| TCCCCATTCAATGTAAGATA+AGG | + | chr1_2:5379783-5379802 | None:intergenic | 35.0% | |
| GATAGCACAAACTATTCTGA+AGG | + | chr1_2:5380082-5380101 | None:intergenic | 35.0% | |
| AAATGTCTTCCTCCCATGAT+CGG | + | chr1_2:5376391-5376410 | None:intergenic | 40.0% | |
| ATCCACAAAACCATGCTTGA+TGG | + | chr1_2:5377034-5377053 | None:intergenic | 40.0% | |
| ATATTCCACACAACTCCACT+AGG | + | chr1_2:5377213-5377232 | None:intergenic | 40.0% | |
| AGTGGAGTTGTGTGGAATAT+AGG | - | chr1_2:5377213-5377232 | Msa0051270:intron | 40.0% | |
| GTGGAGTTGTGTGGAATATA+GGG | - | chr1_2:5377214-5377233 | Msa0051270:intron | 40.0% | |
| GACACCGTTTACTTCACAAA+CGG | - | chr1_2:5377252-5377271 | Msa0051270:intron | 40.0% | |
| CCAACCGTTTGTGAAGTAAA+CGG | + | chr1_2:5377259-5377278 | None:intergenic | 40.0% | |
| AAAAGGTCATACTGAGCAAG+AGG | - | chr1_2:5377422-5377441 | Msa0051270:intron | 40.0% | |
| AAAGGTCATACTGAGCAAGA+GGG | - | chr1_2:5377423-5377442 | Msa0051270:intron | 40.0% | |
| GAAGTCAACACTGCTTCTAA+TGG | - | chr1_2:5377480-5377499 | Msa0051270:intron | 40.0% | |
| AACTTCGTTAACAGGCTTCT+TGG | + | chr1_2:5377688-5377707 | None:intergenic | 40.0% | |
| GCGAGAAAGCAATTGTTGAT+TGG | - | chr1_2:5377760-5377779 | Msa0051270:intron | 40.0% | |
| ! | GAAAGCAATTGTTGATTGGG+TGG | - | chr1_2:5377764-5377783 | Msa0051270:intron | 40.0% |
| !! | GTCCTAACCAGTTTGTTTTC+CGG | - | chr1_2:5377960-5377979 | Msa0051270:intron | 40.0% |
| AACCGGAAAACAAACTGGTT+AGG | + | chr1_2:5377965-5377984 | None:intergenic | 40.0% | |
| CACTAGAGATTCGTATCAAC+TGG | + | chr1_2:5378066-5378085 | None:intergenic | 40.0% | |
| !!! | TACTCAAAGTTTTGGTAGCG+TGG | + | chr1_2:5378129-5378148 | None:intergenic | 40.0% |
| ! | TGGTTCGCTACTCAAAGTTT+TGG | + | chr1_2:5378137-5378156 | None:intergenic | 40.0% |
| ! | GGATTCGGTTAATATGAGGT+GGG | - | chr1_2:5378304-5378323 | Msa0051270:intron | 40.0% |
| TTAATATGAGGTGGGAGTTG+TGG | - | chr1_2:5378312-5378331 | Msa0051270:intron | 40.0% | |
| TTCCTTTCAACTAATTCGGC+AGG | + | chr1_2:5378558-5378577 | None:intergenic | 40.0% | |
| AAACGATTCGACCAACTTAC+TGG | + | chr1_2:5378602-5378621 | None:intergenic | 40.0% | |
| ! | AGTTGGTCGAATCGTTTTGA+TGG | - | chr1_2:5378605-5378624 | Msa0051270:intron | 40.0% |
| ! | GCATCAATTAGCAGAAGTGT+TGG | + | chr1_2:5378642-5378661 | None:intergenic | 40.0% |
| TTTGTCCTGTCATGCTGAAT+AGG | - | chr1_2:5378737-5378756 | Msa0051270:CDS | 40.0% | |
| TCAGTACCATCTTCATCCAT+AGG | - | chr1_2:5378836-5378855 | Msa0051270:CDS | 40.0% | |
| AAGGAATATGTGAGCTCCTA+TGG | + | chr1_2:5378855-5378874 | None:intergenic | 40.0% | |
| TCACATATTCCTTGTGCCAT+AGG | - | chr1_2:5378862-5378881 | Msa0051270:CDS | 40.0% | |
| TGATTATGCAGGTTCAGTGA+GGG | + | chr1_2:5378998-5379017 | None:intergenic | 40.0% | |
| TTGATTATGCAGGTTCAGTG+AGG | + | chr1_2:5378999-5379018 | None:intergenic | 40.0% | |
| GTCAATTCATTAATGGTCCG+AGG | + | chr1_2:5379134-5379153 | None:intergenic | 40.0% | |
| !! | TTTGGCTTGTGCAGTTAGTA+TGG | + | chr1_2:5379160-5379179 | None:intergenic | 40.0% |
| AAAATTGGCAAGCTACTAGG+GGG | + | chr1_2:5379216-5379235 | None:intergenic | 40.0% | |
| CAAAATTGGCAAGCTACTAG+GGG | + | chr1_2:5379217-5379236 | None:intergenic | 40.0% | |
| CCAAAATTGGCAAGCTACTA+GGG | + | chr1_2:5379218-5379237 | None:intergenic | 40.0% | |
| CAATCACAAGACAAGCTTTG+AGG | + | chr1_2:5379250-5379269 | None:intergenic | 40.0% | |
| CTCAAAGCTTGTCTTGTGAT+TGG | - | chr1_2:5379248-5379267 | Msa0051270:CDS | 40.0% | |
| !! | TGTGTAGAGCATTGCTCTTT+GGG | - | chr1_2:5379301-5379320 | Msa0051270:CDS | 40.0% |
| CCTTCCATCAACATATTGGT+AGG | + | chr1_2:5379640-5379659 | None:intergenic | 40.0% | |
| ! | CCTACCAATATGTTGATGGA+AGG | - | chr1_2:5379637-5379656 | Msa0051270:intron | 40.0% |
| CGTCAAATCTGTTTCATACC+TGG | + | chr1_2:5379670-5379689 | None:intergenic | 40.0% | |
| GTATGAAACAGATTTGACGC+AGG | - | chr1_2:5379671-5379690 | Msa0051270:intron | 40.0% | |
| TTGGTAAAGCTACACAAGTG+TGG | + | chr1_2:5379745-5379764 | None:intergenic | 40.0% | |
| !! | AAGGCATTGCTCAAGCATAT+TGG | + | chr1_2:5379764-5379783 | None:intergenic | 40.0% |
| ATTTGAGCCATGAGAGATCA+TGG | + | chr1_2:5379854-5379873 | None:intergenic | 40.0% | |
| CTTTGCTCCCTGAAATTATG+AGG | + | chr1_2:5379920-5379939 | None:intergenic | 40.0% | |
| CGTGAAGATCGTGAAATTGA+AGG | - | chr1_2:5379957-5379976 | Msa0051270:intron | 40.0% | |
| GAAGATCGTGAAATTGAAGG+TGG | - | chr1_2:5379960-5379979 | Msa0051270:intron | 40.0% | |
| CATGGACAAACTCCTAGAAA+TGG | - | chr1_2:5380173-5380192 | Msa0051270:five_prime_UTR | 40.0% | |
| AGGAGTTTGACACCATTTCT+AGG | + | chr1_2:5380188-5380207 | None:intergenic | 40.0% | |
| CATGGGAGGAAGACATTTAC+TGG | - | chr1_2:5376393-5376412 | Msa0051270:three_prime_UTR | 45.0% | |
| GTATCGGATATGTGTCGTGT+CGG | + | chr1_2:5376899-5376918 | None:intergenic | 45.0% | |
| ACACGACACATATCCGATAC+CGG | - | chr1_2:5376899-5376918 | Msa0051270:intron | 45.0% | |
| CATGGATTCACCATCAAGCA+TGG | - | chr1_2:5377021-5377040 | Msa0051270:intron | 45.0% | |
| !! | CACCATCAAGCATGGTTTTG+TGG | - | chr1_2:5377029-5377048 | Msa0051270:intron | 45.0% |
| GTGAACCTTAAAGGTCCTAG+TGG | - | chr1_2:5377195-5377214 | Msa0051270:intron | 45.0% | |
| CAACTCCACTAGGACCTTTA+AGG | + | chr1_2:5377203-5377222 | None:intergenic | 45.0% | |
| CCGTTTACTTCACAAACGGT+TGG | - | chr1_2:5377256-5377275 | Msa0051270:intron | 45.0% | |
| TACTTCACAAACGGTTGGCA+AGG | - | chr1_2:5377261-5377280 | Msa0051270:intron | 45.0% | |
| GTCAACACTGCTTCTAATGG+CGG | - | chr1_2:5377483-5377502 | Msa0051270:intron | 45.0% | |
| ! | TCTAATGGCGGTGTTGAATG+CGG | - | chr1_2:5377495-5377514 | Msa0051270:intron | 45.0% |
| !! | TTTTTGCCGGTTGTTTGGGA+GGG | + | chr1_2:5377663-5377682 | None:intergenic | 45.0% |
| !! | GGTCTTTTTGCCGGTTGTTT+GGG | + | chr1_2:5377667-5377686 | None:intergenic | 45.0% |
| !! | TGGTCTTTTTGCCGGTTGTT+TGG | + | chr1_2:5377668-5377687 | None:intergenic | 45.0% |
| !! | AGGCTTCTTGGTCTTTTTGC+CGG | + | chr1_2:5377676-5377695 | None:intergenic | 45.0% |
| !! | CCAGAAGTAGCTGATTTTGC+TGG | + | chr1_2:5377741-5377760 | None:intergenic | 45.0% |
| CCAGCAAAATCAGCTACTTC+TGG | - | chr1_2:5377738-5377757 | Msa0051270:intron | 45.0% | |
| GCTTGTAGCAAGGAAAACTC+AGG | - | chr1_2:5377786-5377805 | Msa0051270:intron | 45.0% | |
| TGAGGGAAAGTGAGAATCAG+TGG | - | chr1_2:5378272-5378291 | Msa0051270:intron | 45.0% | |
| GAGGGAAAGTGAGAATCAGT+GGG | - | chr1_2:5378273-5378292 | Msa0051270:intron | 45.0% | |
| !! | TGAGAATCAGTGGGTTAGCT+GGG | - | chr1_2:5378282-5378301 | Msa0051270:intron | 45.0% |
| ! | CTGGGGATTCGGTTAATATG+AGG | - | chr1_2:5378300-5378319 | Msa0051270:intron | 45.0% |
| ! | GGGATTCGGTTAATATGAGG+TGG | - | chr1_2:5378303-5378322 | Msa0051270:intron | 45.0% |
| ! | TGGTCAAAAAGGCATGCAGA+AGG | + | chr1_2:5378446-5378465 | None:intergenic | 45.0% |
| CTTTCAACTAATTCGGCAGG+CGG | + | chr1_2:5378555-5378574 | None:intergenic | 45.0% | |
| TGGCAAAGGGTCTGAACAAT+GGG | + | chr1_2:5378582-5378601 | None:intergenic | 45.0% | |
| TCGACCAACTTACTGGCAAA+GGG | + | chr1_2:5378595-5378614 | None:intergenic | 45.0% | |
| TTCGACCAACTTACTGGCAA+AGG | + | chr1_2:5378596-5378615 | None:intergenic | 45.0% | |
| TGAGCTCCTATGGATGAAGA+TGG | + | chr1_2:5378845-5378864 | None:intergenic | 45.0% | |
| ! | GCATAGGAAAGCACAGTAGA+TGG | - | chr1_2:5378957-5378976 | Msa0051270:CDS | 45.0% |
| AGGAGGAAGACTAACTATGG+AGG | + | chr1_2:5379034-5379053 | None:intergenic | 45.0% | |
| TAGATAAGAGTCCTCTCCCT+AGG | - | chr1_2:5379058-5379077 | Msa0051270:CDS | 45.0% | |
| AGATAAGAGTCCTCTCCCTA+GGG | - | chr1_2:5379059-5379078 | Msa0051270:CDS | 45.0% | |
| GATATCTCCAAGACACCCTA+GGG | + | chr1_2:5379077-5379096 | None:intergenic | 45.0% | |
| ACTTGCAAATGTCTCACCCT+CGG | - | chr1_2:5379114-5379133 | Msa0051270:CDS | 45.0% | |
| CTAACTGCACAAGCCAAATC+TGG | - | chr1_2:5379162-5379181 | Msa0051270:CDS | 45.0% | |
| GGTACACATAGGTCCAGATT+TGG | + | chr1_2:5379178-5379197 | None:intergenic | 45.0% | |
| AAATTGGCAAGCTACTAGGG+GGG | + | chr1_2:5379215-5379234 | None:intergenic | 45.0% | |
| !! | CCCTAGTAGCTTGCCAATTT+TGG | - | chr1_2:5379215-5379234 | Msa0051270:CDS | 45.0% |
| GCCAAAATTGGCAAGCTACT+AGG | + | chr1_2:5379219-5379238 | None:intergenic | 45.0% | |
| GAGGAGGGAATTGCCAAAAT+TGG | + | chr1_2:5379231-5379250 | None:intergenic | 45.0% | |
| !! | CACAAGACAAGCTTTGAGGA+GGG | + | chr1_2:5379246-5379265 | None:intergenic | 45.0% |
| !! | TCACAAGACAAGCTTTGAGG+AGG | + | chr1_2:5379247-5379266 | None:intergenic | 45.0% |
| !! | CTGTGTAGAGCATTGCTCTT+TGG | - | chr1_2:5379300-5379319 | Msa0051270:CDS | 45.0% |
| CTCATACCCGAGTCTAACTT+AGG | + | chr1_2:5379547-5379566 | None:intergenic | 45.0% | |
| AGGGCCTTCCATCAACATAT+TGG | + | chr1_2:5379644-5379663 | None:intergenic | 45.0% | |
| GTGCTTTCCATGATCTCTCA+TGG | - | chr1_2:5379844-5379863 | Msa0051270:intron | 45.0% | |
| ! | GGTGGAAGCTGACTTTGTTT+CGG | - | chr1_2:5379978-5379997 | Msa0051270:intron | 45.0% |
| TCAATGCTCTCGAGTCTTGA+TGG | - | chr1_2:5380125-5380144 | Msa0051270:CDS | 45.0% | |
| CAATGCTCTCGAGTCTTGAT+GGG | - | chr1_2:5380126-5380145 | Msa0051270:CDS | 45.0% | |
| ! | GAACGGAACAGAAAGGGTAC+AGG | + | chr1_2:5376266-5376285 | None:intergenic | 50.0% |
| ! | TGGGAAGTGTGAACCGATCA+TGG | - | chr1_2:5376375-5376394 | Msa0051270:three_prime_UTR | 50.0% |
| ! | GGGAAGTGTGAACCGATCAT+GGG | - | chr1_2:5376376-5376395 | Msa0051270:three_prime_UTR | 50.0% |
| AAGTGTGAACCGATCATGGG+AGG | - | chr1_2:5376379-5376398 | Msa0051270:three_prime_UTR | 50.0% | |
| CACGACACATATCCGATACC+GGG | - | chr1_2:5376900-5376919 | Msa0051270:intron | 50.0% | |
| TACGAAGCAAGGACACTCCT+CGG | + | chr1_2:5376937-5376956 | None:intergenic | 50.0% | |
| AAGGTCCTAGTGGAGTTGTG+TGG | - | chr1_2:5377205-5377224 | Msa0051270:intron | 50.0% | |
| GAGACCTTATGCGAGAAAGC+AGG | - | chr1_2:5377375-5377394 | Msa0051270:intron | 50.0% | |
| AGAGCCTGCTTTCTCGCATA+AGG | + | chr1_2:5377382-5377401 | None:intergenic | 50.0% | |
| GGCTGATGCAGTCACTATTG+CGG | - | chr1_2:5377635-5377654 | Msa0051270:intron | 50.0% | |
| !! | CTTTTTGCCGGTTGTTTGGG+AGG | + | chr1_2:5377664-5377683 | None:intergenic | 50.0% |
| CCAGGCGTAACTTCGTTAAC+AGG | + | chr1_2:5377696-5377715 | None:intergenic | 50.0% | |
| CCTGTTAACGAAGTTACGCC+TGG | - | chr1_2:5377693-5377712 | Msa0051270:intron | 50.0% | |
| ! | TGATTGGGTGGCTTGTAGCA+AGG | - | chr1_2:5377776-5377795 | Msa0051270:intron | 50.0% |
| !! | GTGAGAATCAGTGGGTTAGC+TGG | - | chr1_2:5378281-5378300 | Msa0051270:intron | 50.0% |
| !! | GAGAATCAGTGGGTTAGCTG+GGG | - | chr1_2:5378283-5378302 | Msa0051270:intron | 50.0% |
| TGGGAGTTGTGGAGTGATAG+AGG | - | chr1_2:5378323-5378342 | Msa0051270:intron | 50.0% | |
| GGGAGTTGTGGAGTGATAGA+GGG | - | chr1_2:5378324-5378343 | Msa0051270:intron | 50.0% | |
| GGAGTTGTGGAGTGATAGAG+GGG | - | chr1_2:5378325-5378344 | Msa0051270:intron | 50.0% | |
| GAGTTGTGGAGTGATAGAGG+GGG | - | chr1_2:5378326-5378345 | Msa0051270:intron | 50.0% | |
| !! | GAGTGATAGAGGGGGTATCA+TGG | - | chr1_2:5378334-5378353 | Msa0051270:intron | 50.0% |
| CGCCTGCCGAATTAGTTGAA+AGG | - | chr1_2:5378553-5378572 | Msa0051270:intron | 50.0% | |
| CTGGCAAAGGGTCTGAACAA+TGG | + | chr1_2:5378583-5378602 | None:intergenic | 50.0% | |
| CAGACCCTTTGCCAGTAAGT+TGG | - | chr1_2:5378588-5378607 | Msa0051270:intron | 50.0% | |
| !! | GGTCGAATCGTTTTGATGGC+AGG | - | chr1_2:5378609-5378628 | Msa0051270:intron | 50.0% |
| CGATATCTCCAAGACACCCT+AGG | + | chr1_2:5379078-5379097 | None:intergenic | 50.0% | |
| !! | GTAGAGCATTGCTCTTTGGG+TGG | - | chr1_2:5379304-5379323 | Msa0051270:CDS | 50.0% |
| AGCATTGCTCTTTGGGTGGT+AGG | - | chr1_2:5379308-5379327 | Msa0051270:CDS | 50.0% | |
| GCATTGCTCTTTGGGTGGTA+GGG | - | chr1_2:5379309-5379328 | Msa0051270:CDS | 50.0% | |
| CCGAGTCTAACTTAGGACCA+GGG | + | chr1_2:5379540-5379559 | None:intergenic | 50.0% | |
| CCCTGGTCCTAAGTTAGACT+CGG | - | chr1_2:5379537-5379556 | Msa0051270:intron | 50.0% | |
| CCTGGTCCTAAGTTAGACTC+GGG | - | chr1_2:5379538-5379557 | Msa0051270:intron | 50.0% | |
| TTGATGGAAGGCCCTTATCC+AGG | - | chr1_2:5379649-5379668 | Msa0051270:intron | 50.0% | |
| TGAAGCACGGACACGGAAAG+TGG | - | chr1_2:5376783-5376802 | Msa0051270:intron | 55.0% | |
| GATTAGGCGTGTCCCGGTAT+CGG | + | chr1_2:5376915-5376934 | None:intergenic | 55.0% | |
| GCAAGGACACTCCTCGGATT+AGG | + | chr1_2:5376931-5376950 | None:intergenic | 55.0% | |
| TACTGAGCAAGAGGGCGACA+AGG | - | chr1_2:5377431-5377450 | Msa0051270:intron | 55.0% | |
| ATCAGCCATGACCTGCTCAG+GGG | + | chr1_2:5377622-5377641 | None:intergenic | 55.0% | |
| CATCAGCCATGACCTGCTCA+GGG | + | chr1_2:5377623-5377642 | None:intergenic | 55.0% | |
| !! | CAGTGGGTTAGCTGGGGATT+CGG | - | chr1_2:5378289-5378308 | Msa0051270:intron | 55.0% |
| TGCTCTTTGGGTGGTAGGGA+TGG | - | chr1_2:5379313-5379332 | Msa0051270:CDS | 55.0% | |
| CCCGAGTCTAACTTAGGACC+AGG | + | chr1_2:5379541-5379560 | None:intergenic | 55.0% | |
| TGCTCTCGAGTCTTGATGGG+TGG | - | chr1_2:5380129-5380148 | Msa0051270:exon | 55.0% | |
| ! | TCCTCGGATTAGGCGTGTCC+CGG | + | chr1_2:5376921-5376940 | None:intergenic | 60.0% |
| GCAAGAGGGCGACAAGGCAA+AGG | - | chr1_2:5377437-5377456 | Msa0051270:intron | 60.0% | |
| TGAGTCTGCTTCCCCTGAGC+AGG | - | chr1_2:5377608-5377627 | Msa0051270:intron | 60.0% | |
| TGCTTCCCCTGAGCAGGTCA+TGG | - | chr1_2:5377614-5377633 | Msa0051270:intron | 60.0% | |
| GCATCAGCCATGACCTGCTC+AGG | + | chr1_2:5377624-5377643 | None:intergenic | 60.0% | |
| GCGGTTCCCTCCCAAACAAC+CGG | - | chr1_2:5377654-5377673 | Msa0051270:intron | 60.0% | |
| GTCTTCCCCGCTTCTTAGGC+TGG | + | chr1_2:5377719-5377738 | None:intergenic | 60.0% | |
| !! | GCTGGTCTTCCCCGCTTCTT+AGG | + | chr1_2:5377723-5377742 | None:intergenic | 60.0% |
| ! | GTCCTCTCCCTAGGGTGTCT+TGG | - | chr1_2:5379067-5379086 | Msa0051270:CDS | 60.0% |
| CTCCAAGACACCCTAGGGAG+AGG | + | chr1_2:5379072-5379091 | None:intergenic | 60.0% | |
| ACCGGGACACGCCTAATCCG+AGG | - | chr1_2:5376917-5376936 | Msa0051270:intron | 65.0% | |
| CGCCTGGCCAGCCTAAGAAG+CGG | - | chr1_2:5377709-5377728 | Msa0051270:intron | 65.0% | |
| GCCTGGCCAGCCTAAGAAGC+GGG | - | chr1_2:5377710-5377729 | Msa0051270:intron | 65.0% | |
| CCTGGCCAGCCTAAGAAGCG+GGG | - | chr1_2:5377711-5377730 | Msa0051270:intron | 65.0% | |
| ! | CCCCGCTTCTTAGGCTGGCC+AGG | + | chr1_2:5377714-5377733 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 5376255 | 5380264 | 5376255 | ID=Msa0051270;Name=Msa0051270 |
| chr1_2 | mRNA | 5376255 | 5380264 | 5376255 | ID=Msa0051270-mRNA-1;Parent=Msa0051270;Name=Msa0051270-mRNA-1;_AED=0.38;_eAED=0.38;_QI=119|1|1|1|1|1|3|275|275 |
| chr1_2 | exon | 5376255 | 5376588 | 5376255 | ID=Msa0051270-mRNA-1:exon:1610;Parent=Msa0051270-mRNA-1 |
| chr1_2 | exon | 5378712 | 5379375 | 5378712 | ID=Msa0051270-mRNA-1:exon:1609;Parent=Msa0051270-mRNA-1 |
| chr1_2 | exon | 5380041 | 5380264 | 5380041 | ID=Msa0051270-mRNA-1:exon:1608;Parent=Msa0051270-mRNA-1 |
| chr1_2 | five_prime_UTR | 5380146 | 5380264 | 5380146 | ID=Msa0051270-mRNA-1:five_prime_utr;Parent=Msa0051270-mRNA-1 |
| chr1_2 | CDS | 5380041 | 5380145 | 5380041 | ID=Msa0051270-mRNA-1:cds;Parent=Msa0051270-mRNA-1 |
| chr1_2 | CDS | 5378712 | 5379375 | 5378712 | ID=Msa0051270-mRNA-1:cds;Parent=Msa0051270-mRNA-1 |
| chr1_2 | CDS | 5376530 | 5376588 | 5376530 | ID=Msa0051270-mRNA-1:cds;Parent=Msa0051270-mRNA-1 |
| chr1_2 | three_prime_UTR | 5376255 | 5376529 | 5376255 | ID=Msa0051270-mRNA-1:three_prime_utr;Parent=Msa0051270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
