AlfalfaGEDB | Msa0153680

M. sativa cultivar zhongmu-4 / Msa0153680

KEGG: K11718
GO: GO:0001101 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003980 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006011 GO:0006139 GO:0006457 GO:0006458 GO:0006464 GO:0006486 GO:0006487 GO:0006508 GO:0006515 GO:0006725 GO:0006793 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008194 GO:0008219 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009225 GO:0009626 GO:0009719 GO:0009725 GO:0009751 GO:0009812 GO:0009987 GO:0010033 GO:0010204 GO:0010243 GO:0010498 GO:0012501 GO:0012505 GO:0014070 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0023052 GO:0030163 GO:0030968 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0034620 GO:0034641 GO:0034645 GO:0034976 GO:0035251 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0042221 GO:0042440 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046283 GO:0046483 GO:0046527 GO:0046677 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051084 GO:0051603 GO:0051716 GO:0051788 GO:0055086 GO:0065007 GO:0070085 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0080134 GO:0097359 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901698 GO:1901700
PFAM: PF18400.4

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0153680	sp\|Q0WL80\|UGGG_ARATH	80.000	190	38	0	461	650	240	429	7.08e-89	307
Msa0153680	sp\|Q0WL80\|UGGG_ARATH	46.400	125	42	4	24	148	52	151	1.26e-20	101

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0153680	A0A396IUH5	89.841	315	32	0	143	457	1174	1488	0.0	591

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0152430	Msa0153680	0.805866	1.085540e-49	-8.615850e-47
Msa0153680	Msa0388960	0.802835	4.645536e-49	-8.615850e-47
Msa0153680	Msa0484780	0.813024	3.156096e-51	-8.615850e-47
Msa0153680	Msa0626280	0.806031	1.001889e-49	-8.615850e-47
Msa0153680	Msa0693380	0.808031	3.781969e-50	-8.615850e-47
Msa0153680	Msa0908050	0.804768	1.843368e-49	-8.615850e-47
Msa0153680	Msa0909120	0.808806	2.583725e-50	-8.615850e-47
Msa0153680	Msa1082500	0.813473	2.515221e-51	-8.615850e-47
Msa0153680	Msa1278840	0.830031	3.691167e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0153680	MtrunA17_Chr3g0122161	89.841	315	32	0	143	457	1174	1488	0.0	591
Msa0153680	MtrunA17_Chr1g0213431	89.841	315	32	0	143	457	1163	1477	0.0	591
Msa0153680	MtrunA17_Chr2g0320651	88.959	317	33	1	143	457	1174	1490	0.0	585
Msa0153680	MtrunA17_Chr3g0117621	79.233	313	65	0	145	457	1189	1501	6.17e-170	525
Msa0153680	MtrunA17_Chr7g0271061	79.233	313	65	0	145	457	1189	1501	1.19e-169	524
Msa0153680	MtrunA17_Chr1g0213471	64.401	309	110	0	143	451	87	395	5.92e-135	402
Msa0153680	MtrunA17_Chr5g0395921	61.889	307	117	0	145	451	1044	1350	9.35e-126	404
Msa0153680	MtrunA17_Chr2g0277801	96.970	198	6	0	459	656	271	468	1.01e-116	383
Msa0153680	MtrunA17_Chr2g0277801	89.683	126	10	2	23	146	55	179	1.55e-65	235
Msa0153680	MtrunA17_Chr8g0337151	48.882	313	154	4	143	454	75	382	7.32e-103	319

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0153680	AT1G71220.1	80.000	190	38	0	461	650	240	429	7.20e-90	307
Msa0153680	AT1G71220.1	46.400	125	42	4	24	148	52	151	1.28e-21	101
Msa0153680	AT1G71220.2	80.000	190	38	0	461	650	240	429	7.21e-90	307
Msa0153680	AT1G71220.2	46.400	125	42	4	24	148	52	151	1.29e-21	101
Msa0153680	AT1G71220.3	80.000	190	38	0	461	650	278	467	8.53e-90	307
Msa0153680	AT1G71220.3	46.400	125	42	4	24	148	90	189	1.38e-21	100
Msa0153680	ATMG00810.1	47.748	222	103	4	145	362	13	225	1.59e-62	208
Msa0153680	AT4G23160.3	40.404	297	171	4	143	438	288	579	1.47e-59	217
Msa0153680	AT4G23160.2	40.404	297	171	4	143	438	288	579	1.47e-59	217
Msa0153680	ATMG00240.1	43.478	92	44	2	243	334	2	85	8.62e-18	80.1

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Find 157 sgRNAs with CRISPR-Local

Find 530 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTGGGTGGTTATGGTG+TGG	0.704674	1_4:-17318157	Msa0153680:CDS
AAATTCACTGCACGAATATT+AGG	0.312650	1_4:-17313751	Msa0153680:CDS
AACAACAACAACATTATTTC+TGG	0.220348	1_4:-17320207	Msa0153680:CDS
AACCAGCGGATGATCCCACC+TGG	0.603460	1_4:-17315467	Msa0153680:CDS
AAGATAGATGAATCTAGCAG+TGG	0.654281	1_4:+17318465	None:intergenic
AAGCTTCTGCTGAAATAATC+TGG	0.387405	1_4:-17318714	Msa0153680:CDS
AAGTACTTCTTCTGTCATCA+GGG	0.605683	1_4:+17318842	None:intergenic
AAGTCTTTAATGGCAATCAA+CGG	0.659415	1_4:-17315443	Msa0153680:CDS
AAGTGTTGTTGGATTGATAC+TGG	0.427492	1_4:-17319878	Msa0153680:intron
AATCTCCTTCTCTGTGAACA+AGG	0.580934	1_4:-17319028	Msa0153680:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGTGTAGTAATTCCAATG+TGG	-	chr1_4:17314235-17314254	Msa0153680:intron	30.0%
ATCATTAGAATGATCCACAT+TGG	+	chr1_4:17314252-17314271	None:intergenic	30.0%
CCAATATAAACAAATGAGAG+AGG	+	chr1_4:17314382-17314401	None:intergenic	30.0%
CCTCTCTCATTTGTTTATAT+TGG	-	chr1_4:17314379-17314398	Msa0153680:intron	30.0%
ATTACAAGTAAAATCGTGAC+TGG	-	chr1_4:17314505-17314524	Msa0153680:intron	30.0%
TTATATTAGTTCCAGCACTT+TGG	+	chr1_4:17314751-17314770	None:intergenic	30.0%
GATATTAGTTGCTAAACATG+TGG	-	chr1_4:17315060-17315079	Msa0153680:intron	30.0%
TTTACTCTCAAAAACCACTA+TGG	-	chr1_4:17315088-17315107	Msa0153680:intron	30.0%
GTATCGTGAAAATAGTTGAA+TGG	-	chr1_4:17315242-17315261	Msa0153680:intron	30.0%
TTAGCATTAACATCGTCAAT+AGG	+	chr1_4:17315488-17315507	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	17313385	17322276	17313385	ID=Msa0153680;Name=Msa0153680
chr1_4	mRNA	17313385	17322276	17313385	ID=Msa0153680-mRNA-1;Parent=Msa0153680;Name=Msa0153680-mRNA-1;_AED=0.10;_eAED=0.24;_QI=0\|0.55\|0.6\|0.9\|1\|1\|10\|356\|677
chr1_4	exon	17313385	17313824	17313385	ID=Msa0153680-mRNA-1:exon:6592;Parent=Msa0153680-mRNA-1
chr1_4	exon	17314780	17314837	17314780	ID=Msa0153680-mRNA-1:exon:6591;Parent=Msa0153680-mRNA-1
chr1_4	exon	17315407	17315522	17315407	ID=Msa0153680-mRNA-1:exon:6590;Parent=Msa0153680-mRNA-1
chr1_4	exon	17315608	17315720	17315608	ID=Msa0153680-mRNA-1:exon:6589;Parent=Msa0153680-mRNA-1
chr1_4	exon	17315836	17315932	17315836	ID=Msa0153680-mRNA-1:exon:6588;Parent=Msa0153680-mRNA-1
chr1_4	exon	17317572	17317645	17317572	ID=Msa0153680-mRNA-1:exon:6587;Parent=Msa0153680-mRNA-1
chr1_4	exon	17318100	17318225	17318100	ID=Msa0153680-mRNA-1:exon:6586;Parent=Msa0153680-mRNA-1
chr1_4	exon	17318434	17319363	17318434	ID=Msa0153680-mRNA-1:exon:6585;Parent=Msa0153680-mRNA-1
chr1_4	exon	17319879	17320246	17319879	ID=Msa0153680-mRNA-1:exon:6584;Parent=Msa0153680-mRNA-1
chr1_4	exon	17322209	17322276	17322209	ID=Msa0153680-mRNA-1:exon:6583;Parent=Msa0153680-mRNA-1
chr1_4	CDS	17322209	17322276	17322209	ID=Msa0153680-mRNA-1:cds;Parent=Msa0153680-mRNA-1
chr1_4	CDS	17319879	17320246	17319879	ID=Msa0153680-mRNA-1:cds;Parent=Msa0153680-mRNA-1
chr1_4	CDS	17318434	17319363	17318434	ID=Msa0153680-mRNA-1:cds;Parent=Msa0153680-mRNA-1
chr1_4	CDS	17318100	17318225	17318100	ID=Msa0153680-mRNA-1:cds;Parent=Msa0153680-mRNA-1
chr1_4	CDS	17317572	17317645	17317572	ID=Msa0153680-mRNA-1:cds;Parent=Msa0153680-mRNA-1
chr1_4	CDS	17315836	17315932	17315836	ID=Msa0153680-mRNA-1:cds;Parent=Msa0153680-mRNA-1
chr1_4	CDS	17315608	17315720	17315608	ID=Msa0153680-mRNA-1:cds;Parent=Msa0153680-mRNA-1
chr1_4	CDS	17315407	17315522	17315407	ID=Msa0153680-mRNA-1:cds;Parent=Msa0153680-mRNA-1
chr1_4	CDS	17314780	17314837	17314780	ID=Msa0153680-mRNA-1:cds;Parent=Msa0153680-mRNA-1
chr1_4	CDS	17313741	17313824	17313741	ID=Msa0153680-mRNA-1:cds;Parent=Msa0153680-mRNA-1
chr1_4	three_prime_UTR	17313385	17313740	17313385	ID=Msa0153680-mRNA-1:three_prime_utr;Parent=Msa0153680-mRNA-1

Gene Sequence

>Msa0153680

ATGGGAGAATTTGATAATAACGGTGCAGATCAGATAGAGATAAGGGGAAGCAAAGGTGGGAAACGAAGCGAATTATTATCTAAACAACAACAACAACATTATTTCTGGAACTTCATCGACATTTGGATTAACTCTGATCCTATTGACGATGTTAATGCTAATGCTAAATACTGTGTTAAGAAGATTCTAGAACACGGTCGTTCATTATTAACAGAACCATTAGCATCGGTTTTTGAATTTTCTTTGATTTTGAGATCAGCTTCACCTACGCTTGTACTTTACCGTCAATTAGCGCGTGATTCGCTATCCTCGTTTCCACTGTTACATAATGATAATGAAATTGTTGAGATTAAACAGAATGAGACGCAATTAGATCCGTTGCGTGTCGGTGTAAGTGTTGAAAGTCCTGGTGGGAAGTGTTGTTGGATTGATACTGGGAATTCTACCACTGCCATTCAACAACTGGTGCATAAGCTTAACTCAGAATTTTCTCTCAAGGATTTGGGAAAACTGGACTATTTTCTTGGCATAGAGGTTCACCATTCACCATCAGGTTCTCTACTCTTGTCCCAATCAAAATATATCAAAGATCTGCTTCAAAGAGCCAACATGATAAATGCCAACAGTATGGCCTCACCTATGGCATCCAGCACAAAATTATCAAAGTTTGGTTCCAACAATGTTTCTGATCCTTCCTACTTCAGGTCTATAGTTGGTGCTCTGCAGTATGCCACTATTACAAGGCCTGAAATCTCCTTCTCTGTGAACAAGGTGTGTCAGTTTCTATCTGCACCTCAGGAGGAGCACTGGAAAGCAGTAAAAAGAATTCTTAGATACTTACAAGGAACTCTGCATCATGGCCTGCTTCTCACACCTGCCAGTACTACTGAGCCCCTTGCAATCACAGGGTTTTGTGATGCTGATTGGGCTTCAGACCCTGATGACAGAAGAAGTACTTCTGGAGCATGCATCTTTTTGGGTCCTAATCTGGTATCTTGGTGGGCAAAGAAACAAACACTTGTTGCTAGATCCAGTGCAGAAGCTGAGTACAGAAGTCTTGCACAAGCTTCTGCTGAAATAATCTGGATACAGTCTTTACTTAAGGAACTACAAGTAAAAAGTAAAGTCCCTCAAATCTTTTGTGACAATCTGAGTGCAGTCTCTTTAGCTCACAATCCTGTGCTTCATTCAAGAACAAAGCACATGGAACTTGATATTTTCTTTGTCAGAGAAAAGGTTATCAAAAAGGAGCTGGTGGTCTCTCATGTGCTTGCTCAAGATCAGTGGGCAGATGTTCTCACTAAACCTTTGTCCACTGCTAGATTCATCTATCTTAGAGACAAACTGAGGGTTTGTGACACCCTCGTTCTAATAATTGGACCATGTGGTTCTGTTGGTGTGAGCGAGTCAGTAAACTTGGGTGGTTATGGTGTGGAACTTGCTTTAAAGAATATGGAATATAAGGCCATGGATGATAGCGCAGTTAAGAAAGGTGTGACTTTGGAGGATCCTCGCAATGAAGATCTTAGTCAAGAAGTTAGAGGATTCATATTCTCTAAAATTCTGGATCGTAAACCTGAGTTAGCATCTGAGATCATGGCCTTCTGGGATTATCTACTGTCATCAACAGTATCAGATACACTTGATGTCTGGGAACTGAAGGATCTAGGACATCAAACTGTGCAGAGAATAGTCCGTGCTTCTGATCCTCTGCAGTCAATGCAGGATATTAATCAAAATTTCCCTAGCATAGTTTCTTATTTATCTCGCATGAAGCTTGATGATTCTGTTCGAGATGAAATTACTGCAAACCAGCGGATGATCCCACCTGGCAAGTCTTTAATGGCAATCAACGGTGCTTTAGTCAATGTCGAAGATATTGACCTTTATATGTTGATTGACTTGGTTCATCAGGATCTACTGTTGGCTGATCAGTTCTCAAAACTGAAGGGTGCTAGACGAATTGTAGCTGAGTGGCCAGACCTTGATTTGGAGGCGAGAAAATTCACTGCACGAATATTAGGTGATATCTAG

Protein sequence

>Msa0153680

MGEFDNNGADQIEIRGSKGGKRSELLSKQQQQHYFWNFIDIWINSDPIDDVNANAKYCVKKILEHGRSLLTEPLASVFEFSLILRSASPTLVLYRQLARDSLSSFPLLHNDNEIVEIKQNETQLDPLRVGVSVESPGGKCCWIDTGNSTTAIQQLVHKLNSEFSLKDLGKLDYFLGIEVHHSPSGSLLLSQSKYIKDLLQRANMINANSMASPMASSTKLSKFGSNNVSDPSYFRSIVGALQYATITRPEISFSVNKVCQFLSAPQEEHWKAVKRILRYLQGTLHHGLLLTPASTTEPLAITGFCDADWASDPDDRRSTSGACIFLGPNLVSWWAKKQTLVARSSAEAEYRSLAQASAEIIWIQSLLKELQVKSKVPQIFCDNLSAVSLAHNPVLHSRTKHMELDIFFVREKVIKKELVVSHVLAQDQWADVLTKPLSTARFIYLRDKLRVCDTLVLIIGPCGSVGVSESVNLGGYGVELALKNMEYKAMDDSAVKKGVTLEDPRNEDLSQEVRGFIFSKILDRKPELASEIMAFWDYLLSSTVSDTLDVWELKDLGHQTVQRIVRASDPLQSMQDINQNFPSIVSYLSRMKLDDSVRDEITANQRMIPPGKSLMAINGALVNVEDIDLYMLIDLVHQDLLLADQFSKLKGARRIVAEWPDLDLEARKFTARILGDI*