Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166600 | sp|Q93ZH7|IQD2_ARATH | 51.033 | 484 | 194 | 16 | 1 | 465 | 1 | 460 | 1.02e-131 | 391 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166600 | A0A072VW14 | 98.069 | 466 | 9 | 0 | 1 | 466 | 1 | 466 | 0.0 | 943 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0074000 | Msa0166600 | 0.962051 | 2.028662e-120 | -8.615850e-47 |
| Msa0084330 | Msa0166600 | 0.806802 | 6.892501e-50 | -8.615850e-47 |
| Msa0122010 | Msa0166600 | 0.930411 | 1.702820e-93 | -8.615850e-47 |
| Msa0166600 | Msa0301260 | -0.802706 | 4.939593e-49 | -8.615850e-47 |
| Msa0166600 | Msa0662370 | 0.807536 | 4.818098e-50 | -8.615850e-47 |
| Msa0166600 | Msa0982220 | 0.804992 | 1.655118e-49 | -8.615850e-47 |
| Msa0166600 | Msa1437360 | 0.953396 | 3.005735e-111 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166600 | MtrunA17_Chr1g0181581 | 98.069 | 466 | 9 | 0 | 1 | 466 | 1 | 466 | 0.0 | 943 |
| Msa0166600 | MtrunA17_Chr7g0263731 | 69.665 | 478 | 121 | 11 | 1 | 465 | 1 | 467 | 0.0 | 583 |
| Msa0166600 | MtrunA17_Chr6g0462191 | 46.055 | 469 | 192 | 14 | 1 | 451 | 1 | 426 | 5.24e-95 | 293 |
| Msa0166600 | MtrunA17_Chr1g0200161 | 37.870 | 507 | 246 | 15 | 1 | 463 | 1 | 482 | 3.72e-79 | 254 |
| Msa0166600 | MtrunA17_Chr4g0045641 | 28.743 | 501 | 265 | 14 | 1 | 436 | 1 | 474 | 3.01e-39 | 149 |
| Msa0166600 | MtrunA17_Chr8g0346021 | 29.948 | 384 | 211 | 11 | 101 | 435 | 112 | 486 | 3.26e-35 | 137 |
| Msa0166600 | MtrunA17_Chr4g0025441 | 40.310 | 258 | 138 | 7 | 30 | 275 | 2 | 255 | 3.39e-35 | 135 |
| Msa0166600 | MtrunA17_Chr4g0020671 | 29.762 | 420 | 210 | 16 | 1 | 407 | 1 | 348 | 2.46e-33 | 130 |
| Msa0166600 | MtrunA17_Chr2g0283321 | 38.922 | 167 | 90 | 5 | 115 | 276 | 62 | 221 | 8.23e-29 | 115 |
| Msa0166600 | MtrunA17_Chr2g0316401 | 35.758 | 165 | 96 | 3 | 117 | 276 | 75 | 234 | 3.55e-27 | 111 |
| Msa0166600 | MtrunA17_Chr3g0135851 | 41.667 | 204 | 96 | 7 | 109 | 292 | 78 | 278 | 1.82e-26 | 111 |
| Msa0166600 | MtrunA17_Chr7g0273861 | 30.169 | 295 | 170 | 11 | 5 | 279 | 3 | 281 | 7.63e-26 | 109 |
| Msa0166600 | MtrunA17_Chr3g0126901 | 25.977 | 435 | 250 | 14 | 1 | 426 | 1 | 372 | 5.39e-22 | 98.2 |
| Msa0166600 | MtrunA17_Chr1g0146931 | 37.037 | 189 | 92 | 4 | 115 | 276 | 121 | 309 | 1.02e-20 | 94.7 |
| Msa0166600 | MtrunA17_Chr1g0204901 | 40.816 | 98 | 51 | 1 | 111 | 201 | 131 | 228 | 7.86e-16 | 79.7 |
| Msa0166600 | MtrunA17_Chr1g0203711 | 27.742 | 310 | 172 | 9 | 115 | 410 | 114 | 385 | 7.47e-15 | 76.6 |
| Msa0166600 | MtrunA17_Chr8g0389781 | 53.731 | 67 | 31 | 0 | 116 | 182 | 126 | 192 | 1.46e-14 | 75.5 |
| Msa0166600 | MtrunA17_Chr1g0172611 | 35.036 | 137 | 81 | 1 | 111 | 239 | 100 | 236 | 2.63e-14 | 74.3 |
| Msa0166600 | MtrunA17_Chr7g0273951 | 47.297 | 74 | 39 | 0 | 118 | 191 | 108 | 181 | 4.44e-14 | 73.6 |
| Msa0166600 | MtrunA17_Chr6g0472551 | 43.529 | 85 | 47 | 1 | 109 | 192 | 109 | 193 | 5.65e-14 | 73.9 |
| Msa0166600 | MtrunA17_Chr2g0330051 | 41.176 | 170 | 88 | 5 | 116 | 275 | 78 | 245 | 7.59e-14 | 73.2 |
| Msa0166600 | MtrunA17_Chr8g0340761 | 37.931 | 116 | 58 | 4 | 118 | 230 | 128 | 232 | 8.46e-14 | 73.2 |
| Msa0166600 | MtrunA17_Chr4g0060381 | 36.066 | 122 | 58 | 2 | 62 | 180 | 60 | 164 | 6.00e-13 | 70.9 |
| Msa0166600 | MtrunA17_Chr2g0330921 | 51.562 | 64 | 31 | 0 | 117 | 180 | 98 | 161 | 9.24e-13 | 69.3 |
| Msa0166600 | MtrunA17_Chr1g0166431 | 42.000 | 100 | 56 | 1 | 116 | 213 | 117 | 216 | 1.62e-12 | 69.3 |
| Msa0166600 | MtrunA17_Chr8g0342551 | 37.500 | 168 | 95 | 3 | 116 | 276 | 90 | 254 | 3.50e-12 | 68.2 |
| Msa0166600 | MtrunA17_Chr1g0156121 | 30.189 | 159 | 89 | 3 | 116 | 274 | 124 | 260 | 4.23e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166600 | AT5G03040.1 | 51.033 | 484 | 194 | 16 | 1 | 465 | 1 | 460 | 1.03e-132 | 391 |
| Msa0166600 | AT5G03040.3 | 51.033 | 484 | 194 | 16 | 1 | 465 | 1 | 460 | 1.03e-132 | 391 |
| Msa0166600 | AT5G03040.2 | 51.033 | 484 | 194 | 16 | 1 | 465 | 1 | 460 | 1.03e-132 | 391 |
| Msa0166600 | AT3G52290.1 | 43.737 | 471 | 209 | 16 | 1 | 459 | 1 | 427 | 1.66e-100 | 308 |
| Msa0166600 | AT3G09710.1 | 46.154 | 481 | 202 | 20 | 5 | 459 | 4 | 453 | 1.59e-93 | 291 |
| Msa0166600 | AT3G09710.2 | 45.051 | 495 | 201 | 21 | 5 | 459 | 4 | 467 | 1.30e-90 | 283 |
| Msa0166600 | AT2G26410.2 | 35.112 | 356 | 186 | 9 | 115 | 461 | 147 | 466 | 2.34e-45 | 166 |
| Msa0166600 | AT2G26410.1 | 35.112 | 356 | 186 | 9 | 115 | 461 | 147 | 466 | 2.34e-45 | 166 |
| Msa0166600 | AT3G59690.2 | 33.025 | 324 | 166 | 11 | 119 | 434 | 172 | 452 | 1.07e-33 | 133 |
| Msa0166600 | AT3G59690.1 | 33.025 | 324 | 166 | 11 | 119 | 434 | 172 | 452 | 1.07e-33 | 133 |
| Msa0166600 | AT2G43680.4 | 30.211 | 331 | 180 | 10 | 113 | 436 | 319 | 605 | 9.55e-32 | 129 |
| Msa0166600 | AT2G43680.2 | 30.211 | 331 | 180 | 10 | 113 | 436 | 319 | 605 | 9.55e-32 | 129 |
| Msa0166600 | AT2G43680.3 | 30.211 | 331 | 180 | 10 | 113 | 436 | 319 | 605 | 9.55e-32 | 129 |
| Msa0166600 | AT2G43680.5 | 30.211 | 331 | 180 | 10 | 113 | 436 | 319 | 605 | 9.55e-32 | 129 |
| Msa0166600 | AT2G43680.1 | 30.211 | 331 | 180 | 10 | 113 | 436 | 320 | 606 | 9.86e-32 | 129 |
| Msa0166600 | AT3G22190.3 | 45.833 | 192 | 96 | 5 | 87 | 275 | 63 | 249 | 6.72e-31 | 124 |
| Msa0166600 | AT3G22190.2 | 45.833 | 192 | 96 | 5 | 87 | 275 | 63 | 249 | 6.72e-31 | 124 |
| Msa0166600 | AT3G22190.4 | 45.833 | 192 | 96 | 5 | 87 | 275 | 63 | 249 | 6.72e-31 | 124 |
| Msa0166600 | AT3G22190.1 | 45.833 | 192 | 96 | 5 | 87 | 275 | 63 | 249 | 6.72e-31 | 124 |
| Msa0166600 | AT2G33990.1 | 37.349 | 166 | 97 | 3 | 114 | 276 | 45 | 206 | 5.10e-30 | 118 |
| Msa0166600 | AT4G00820.1 | 26.160 | 474 | 297 | 13 | 8 | 437 | 11 | 475 | 1.11e-28 | 119 |
| Msa0166600 | AT2G26180.1 | 45.665 | 173 | 80 | 4 | 115 | 276 | 83 | 252 | 1.26e-28 | 117 |
| Msa0166600 | AT1G01110.2 | 27.273 | 506 | 262 | 22 | 1 | 437 | 1 | 469 | 2.94e-28 | 117 |
| Msa0166600 | AT3G15050.1 | 38.235 | 170 | 99 | 4 | 110 | 276 | 44 | 210 | 9.65e-28 | 111 |
| Msa0166600 | AT3G49260.1 | 26.484 | 438 | 255 | 14 | 1 | 412 | 1 | 397 | 1.35e-25 | 109 |
| Msa0166600 | AT3G49260.4 | 26.484 | 438 | 255 | 14 | 1 | 412 | 1 | 397 | 1.35e-25 | 109 |
| Msa0166600 | AT3G49260.2 | 26.484 | 438 | 255 | 14 | 1 | 412 | 1 | 397 | 1.35e-25 | 109 |
| Msa0166600 | AT3G49260.3 | 26.424 | 439 | 255 | 13 | 1 | 412 | 1 | 398 | 1.37e-25 | 109 |
| Msa0166600 | AT5G13460.1 | 30.164 | 305 | 135 | 11 | 117 | 411 | 112 | 348 | 7.38e-25 | 107 |
| Msa0166600 | AT1G72670.1 | 36.464 | 181 | 106 | 4 | 116 | 288 | 93 | 272 | 1.23e-21 | 97.1 |
| Msa0166600 | AT4G10640.1 | 26.471 | 476 | 202 | 20 | 3 | 433 | 4 | 376 | 2.98e-19 | 90.1 |
| Msa0166600 | AT1G17480.1 | 36.364 | 154 | 86 | 4 | 116 | 267 | 94 | 237 | 5.78e-19 | 89.0 |
| Msa0166600 | AT4G14750.1 | 44.186 | 86 | 48 | 0 | 97 | 182 | 86 | 171 | 1.01e-15 | 79.3 |
| Msa0166600 | AT1G18840.1 | 42.000 | 100 | 48 | 1 | 91 | 180 | 74 | 173 | 1.16e-15 | 79.7 |
| Msa0166600 | AT1G18840.3 | 42.000 | 100 | 48 | 1 | 91 | 180 | 74 | 173 | 1.16e-15 | 79.7 |
| Msa0166600 | AT1G18840.2 | 42.000 | 100 | 48 | 1 | 91 | 180 | 74 | 173 | 1.16e-15 | 79.7 |
| Msa0166600 | AT4G14750.2 | 44.186 | 86 | 48 | 0 | 97 | 182 | 145 | 230 | 1.38e-15 | 79.3 |
| Msa0166600 | AT4G14750.3 | 44.186 | 86 | 48 | 0 | 97 | 182 | 145 | 230 | 1.69e-15 | 79.0 |
| Msa0166600 | AT5G35670.1 | 32.124 | 193 | 110 | 7 | 91 | 275 | 132 | 311 | 1.46e-14 | 75.9 |
| Msa0166600 | AT1G74690.1 | 32.727 | 165 | 82 | 3 | 116 | 276 | 113 | 252 | 1.85e-14 | 76.3 |
| Msa0166600 | AT3G16490.1 | 50.000 | 62 | 31 | 0 | 118 | 179 | 109 | 170 | 3.22e-12 | 68.6 |
| Msa0166600 | AT1G51960.1 | 32.911 | 158 | 92 | 4 | 33 | 179 | 9 | 163 | 3.29e-11 | 65.1 |
| Msa0166600 | AT5G07240.1 | 50.847 | 59 | 29 | 0 | 118 | 176 | 108 | 166 | 6.70e-11 | 64.3 |
| Msa0166600 | AT5G07240.2 | 50.847 | 59 | 29 | 0 | 118 | 176 | 154 | 212 | 8.36e-11 | 64.3 |
| Msa0166600 | AT5G03960.1 | 33.333 | 144 | 64 | 3 | 113 | 239 | 106 | 234 | 8.82e-11 | 63.9 |
| Msa0166600 | AT5G03960.3 | 33.333 | 144 | 64 | 3 | 113 | 239 | 107 | 235 | 8.93e-11 | 63.9 |
| Msa0166600 | AT5G03960.2 | 33.333 | 144 | 64 | 3 | 113 | 239 | 107 | 235 | 8.93e-11 | 63.9 |
Find 153 sgRNAs with CRISPR-Local
Find 283 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGAGCATTTCGGGCTTTA+AGG | 0.138542 | 1_4:-47957638 | Msa0166600:CDS |
| AAGAATATTTGTAGTATATC+TGG | 0.187687 | 1_4:-47954511 | Msa0166600:three_prime_UTR |
| ATCTATAAATCCAATGTTTA+TGG | 0.198850 | 1_4:-47955611 | Msa0166600:CDS |
| GGAGGTGCTTGATCAGTTTC+TGG | 0.216889 | 1_4:+47958170 | None:intergenic |
| AACCTCATCATTCGGTTTAC+TGG | 0.224722 | 1_4:+47957983 | None:intergenic |
| TTCACATTGGAAAACCAATT+TGG | 0.228400 | 1_4:+47958546 | None:intergenic |
| TCTCTCTTGCATTTCACTTT+AGG | 0.230519 | 1_4:-47958687 | Msa0166600:five_prime_UTR |
| TGATAAGCTACACATAAATT+TGG | 0.239726 | 1_4:+47954848 | None:intergenic |
| AGTTAGGTGAACCCGGATTT+TGG | 0.244125 | 1_4:+47955404 | None:intergenic |
| TAGAAATTAATGCAATAATA+TGG | 0.250528 | 1_4:-47958580 | Msa0166600:exon |
| GAGAACACTACACCAGAAAA+AGG | 0.257119 | 1_4:-47955121 | Msa0166600:CDS |
| TTAGGCAAGAAGAGCATTTC+GGG | 0.261895 | 1_4:-47957646 | Msa0166600:intron |
| TTCAGTTTCTTGACAATTGC+TGG | 0.269742 | 1_4:+47955355 | None:intergenic |
| CTGCACACTCGTCATGCTTT+TGG | 0.277740 | 1_4:+47955291 | None:intergenic |
| TTCTTGACAATTGCTGGCTT+GGG | 0.292014 | 1_4:+47955361 | None:intergenic |
| TCCAAAGGTGAGCTGTATTA+TGG | 0.294106 | 1_4:-47955323 | Msa0166600:CDS |
| TTTGAGTTGGATTGGAAGTT+AGG | 0.295442 | 1_4:+47955388 | None:intergenic |
| TTTAAGCTGCTTTCTACCTT+TGG | 0.311790 | 1_4:+47955022 | None:intergenic |
| TGACCCGCCTCGAACGAATC+TGG | 0.328605 | 1_4:+47957517 | None:intergenic |
| AAAGAAACGGCTTAACTTCC+CGG | 0.332661 | 1_4:-47955083 | Msa0166600:CDS |
| TTTCTTGACAATTGCTGGCT+TGG | 0.333380 | 1_4:+47955360 | None:intergenic |
| TGGGGAAGAATAAGCCAAAT+TGG | 0.335409 | 1_4:-47958560 | Msa0166600:CDS |
| TTTAGGCAAGAAGAGCATTT+CGG | 0.342976 | 1_4:-47957647 | Msa0166600:intron |
| TCTCCTTCTCCATCAGGCTT+TGG | 0.344634 | 1_4:+47955533 | None:intergenic |
| TCAAGCCGCTCCAATTGTTC+AGG | 0.350981 | 1_4:-47958009 | Msa0166600:CDS |
| ATCTCGAGAGCATTCCCATT+TGG | 0.351037 | 1_4:-47954706 | Msa0166600:three_prime_UTR |
| TCTCGAGAGCATTCCCATTT+GGG | 0.354296 | 1_4:-47954705 | Msa0166600:three_prime_UTR |
| CGGAGGAGGCACTCCATTGC+TGG | 0.355945 | 1_4:-47955256 | Msa0166600:CDS |
| CTCGTACTTGCTTAGTAACT+TGG | 0.364044 | 1_4:+47957244 | None:intergenic |
| GGCTTATTCATTCACTCATC+AGG | 0.365734 | 1_4:-47957195 | Msa0166600:intron |
| AGAAATTAATGCAATAATAT+GGG | 0.367739 | 1_4:-47958579 | Msa0166600:exon |
| TGTGTAGCTTATCATTTCCT+TGG | 0.374153 | 1_4:-47954839 | Msa0166600:three_prime_UTR |
| TCCAACAGCGAGCCAAAATC+CGG | 0.381133 | 1_4:-47955416 | Msa0166600:CDS |
| GGATCAAAGAAGAAATGGTT+TGG | 0.384554 | 1_4:-47958224 | Msa0166600:CDS |
| AATTGTTCTCCTTCTCCATC+AGG | 0.385930 | 1_4:+47955527 | None:intergenic |
| AATTGTCAAGAAACTGAATA+AGG | 0.387705 | 1_4:-47955350 | Msa0166600:CDS |
| CAAGTGGATCAAAGAAGAAA+TGG | 0.394536 | 1_4:-47958229 | Msa0166600:CDS |
| AAGCTGCTTTCTACCTTTGG+TGG | 0.401382 | 1_4:+47955025 | None:intergenic |
| CTTCTCCATCAGGCTTTGGT+TGG | 0.409739 | 1_4:+47955537 | None:intergenic |
| GAACAGGTTGAGAGCACTAA+TGG | 0.410177 | 1_4:-47957610 | Msa0166600:CDS |
| TGAATGCCGCCTTGATGATC+TGG | 0.413022 | 1_4:+47955051 | None:intergenic |
| TGGGAGGCTTTGAGTTGGAT+TGG | 0.416717 | 1_4:+47955380 | None:intergenic |
| TTACTGGCAACCTGAACAAT+TGG | 0.421900 | 1_4:+47957999 | None:intergenic |
| TGGACTTTGCAACCTGGACT+TGG | 0.423630 | 1_4:+47955153 | None:intergenic |
| GATGATCTGGCAGGCGAAGC+CGG | 0.424668 | 1_4:+47955064 | None:intergenic |
| GGATCCAACGAATCCTAGTT+GGG | 0.426047 | 1_4:-47955590 | Msa0166600:CDS |
| TCTGTTTGAACATCAGAAAC+AGG | 0.427072 | 1_4:+47958044 | None:intergenic |
| AGATCATCAAGGCGGCATTC+AGG | 0.428105 | 1_4:-47955049 | Msa0166600:CDS |
| AGCTGCTTTCTACCTTTGGT+GGG | 0.428437 | 1_4:+47955026 | None:intergenic |
| AAGAGCATTTCGGGCTTTAA+GGG | 0.430354 | 1_4:-47957637 | Msa0166600:CDS |
| CTCCGCTCTATGCAGACTTT+AGG | 0.430493 | 1_4:-47957552 | Msa0166600:CDS |
| CACAAAAGAGCTAGAGATAC+AGG | 0.432698 | 1_4:-47957445 | Msa0166600:intron |
| ATGTGATTAGATTAGATCTT+GGG | 0.439093 | 1_4:+47958775 | None:intergenic |
| GTAGCTTATCATTTCCTTGG+AGG | 0.441460 | 1_4:-47954836 | Msa0166600:three_prime_UTR |
| TTGACAATTGCTGGCTTGGG+AGG | 0.449771 | 1_4:+47955364 | None:intergenic |
| TGATTTGCTGATTTCAGCAC+TGG | 0.452185 | 1_4:+47955474 | None:intergenic |
| GTGTGCAGTCGGAGCGTGTT+CGG | 0.453061 | 1_4:-47955276 | Msa0166600:CDS |
| TTAGTTGGCACCATGTAACT+TGG | 0.454849 | 1_4:+47955187 | None:intergenic |
| AGATTCGTTCGAGGCGGGTC+AGG | 0.459187 | 1_4:-47957515 | Msa0166600:CDS |
| TCCATAATACAGCTCACCTT+TGG | 0.459798 | 1_4:+47955322 | None:intergenic |
| AATGTGATTAGATTAGATCT+TGG | 0.464043 | 1_4:+47958774 | None:intergenic |
| AGAATGATAACAGTCCCAAA+TGG | 0.464056 | 1_4:+47954691 | None:intergenic |
| GATCAAAGAAGAAATGGTTT+GGG | 0.464945 | 1_4:-47958223 | Msa0166600:CDS |
| TCAGCCTCAGGTGGATGAAA+AGG | 0.467361 | 1_4:+47958149 | None:intergenic |
| GACCCGCCTCGAACGAATCT+GGG | 0.469265 | 1_4:+47957518 | None:intergenic |
| AGAGAAGTTGAAGATAAAAG+AGG | 0.470825 | 1_4:+47958749 | None:intergenic |
| ATTGCCGCAACCTCATCATT+CGG | 0.473059 | 1_4:+47957975 | None:intergenic |
| CATAACAGATTGGGGAGGAA+TGG | 0.475348 | 1_4:-47957301 | Msa0166600:intron |
| TGGATCCAACGAATCCTAGT+TGG | 0.479559 | 1_4:-47955591 | Msa0166600:CDS |
| ATAACAGATTGGGGAGGAAT+GGG | 0.482482 | 1_4:-47957300 | Msa0166600:intron |
| TATTCATTTGCTTACTAATG+TGG | 0.485180 | 1_4:-47954772 | Msa0166600:three_prime_UTR |
| GAGAAGTTGAAGATAAAAGA+GGG | 0.489280 | 1_4:+47958750 | None:intergenic |
| ATGATCTGGCAGGCGAAGCC+GGG | 0.489921 | 1_4:+47955065 | None:intergenic |
| ATAATCTCCTCCTCAGCCTC+AGG | 0.493239 | 1_4:+47958137 | None:intergenic |
| TTCGTTGGATCCATAAACAT+TGG | 0.495801 | 1_4:+47955601 | None:intergenic |
| GTAGTGTTCTCTGCAGCTGA+TGG | 0.498156 | 1_4:+47955133 | None:intergenic |
| CTCTAAACAAAACAAACATC+AGG | 0.498653 | 1_4:-47958505 | Msa0166600:intron |
| AGGGCCAGTCGTAAAACGTC+AGG | 0.499673 | 1_4:-47957586 | Msa0166600:CDS |
| TGGCTTGGGAGGCTTTGAGT+TGG | 0.501361 | 1_4:+47955375 | None:intergenic |
| GCAAAGTACTCCACTAGTAA+TGG | 0.501618 | 1_4:-47954939 | Msa0166600:three_prime_UTR |
| AGTCGGAGCGTGTTCGGAGG+AGG | 0.502604 | 1_4:-47955270 | Msa0166600:CDS |
| TATGTGTGTTGTGTGTGGCT+TGG | 0.505216 | 1_4:-47954546 | Msa0166600:three_prime_UTR |
| CTTACTAATGTGGTTCATGA+TGG | 0.505740 | 1_4:-47954762 | Msa0166600:three_prime_UTR |
| AGAATATTTGTAGTATATCT+GGG | 0.513307 | 1_4:-47954510 | Msa0166600:three_prime_UTR |
| GAATGATAACAGTCCCAAAT+GGG | 0.514412 | 1_4:+47954692 | None:intergenic |
| GGTACATCAACATCCACATC+TGG | 0.515322 | 1_4:+47958065 | None:intergenic |
| ACTAAGAGCTTTCTTCACAT+TGG | 0.521176 | 1_4:+47958533 | None:intergenic |
| CATCCCCAACTAGGATTCGT+TGG | 0.524622 | 1_4:+47955586 | None:intergenic |
| GAGGCGGGTCAGGATGTTAG+AGG | 0.525201 | 1_4:-47957505 | Msa0166600:CDS |
| CCTTTGGAAATGCAAAGAAA+CGG | 0.526599 | 1_4:-47955096 | Msa0166600:CDS |
| ATCCCAGATTCGTTCGAGGC+GGG | 0.527771 | 1_4:-47957520 | Msa0166600:CDS |
| CTAGTAATGGAATTATATCA+TGG | 0.529725 | 1_4:-47954926 | Msa0166600:three_prime_UTR |
| TACCAAGTATCGCCGAAAAG+TGG | 0.530850 | 1_4:+47957941 | None:intergenic |
| TTAAATGCAGAAATTACTGT+TGG | 0.533004 | 1_4:-47955004 | Msa0166600:CDS |
| ATCCTAGTTGGGGATGGAGC+TGG | 0.536093 | 1_4:-47955579 | Msa0166600:CDS |
| TGCCGCCTTGATGATCTGGC+AGG | 0.546459 | 1_4:+47955055 | None:intergenic |
| AGCTGATGGACTTTGCAACC+TGG | 0.547253 | 1_4:+47955147 | None:intergenic |
| TCATCCACCTGAGGCTGAGG+AGG | 0.549283 | 1_4:-47958144 | Msa0166600:CDS |
| CAACCAAAGCCTGATGGAGA+AGG | 0.551822 | 1_4:-47955536 | Msa0166600:CDS |
| AGAATCACAAATAAGAAATG+AGG | 0.552097 | 1_4:+47954619 | None:intergenic |
| TAAGTTGAATAAATTGAAGA+GGG | 0.552310 | 1_4:+47958652 | None:intergenic |
| CCGTTTCTTTGCATTTCCAA+AGG | 0.555247 | 1_4:+47955096 | None:intergenic |
| GATTGGAAGTTAGGTGAACC+CGG | 0.557782 | 1_4:+47955397 | None:intergenic |
| AGTAAAGAAAACAGCCTCCA+AGG | 0.558637 | 1_4:+47954822 | None:intergenic |
| TTTGTAGTATATCTGGGAAG+TGG | 0.565012 | 1_4:-47954504 | Msa0166600:three_prime_UTR |
| TCCATCAGTTCCAAGTTACA+TGG | 0.565302 | 1_4:-47955197 | Msa0166600:CDS |
| TGCAATCCCAGATTCGTTCG+AGG | 0.569562 | 1_4:-47957524 | Msa0166600:CDS |
| TAAACCGAATGATGAGGTTG+CGG | 0.570682 | 1_4:-47957979 | Msa0166600:CDS |
| GGCAGCCAACCAAAGCCTGA+TGG | 0.570992 | 1_4:-47955542 | Msa0166600:CDS |
| CAACGAATCCTAGTTGGGGA+TGG | 0.576539 | 1_4:-47955585 | Msa0166600:CDS |
| ACCATGTAACTTGGAACTGA+TGG | 0.577244 | 1_4:+47955196 | None:intergenic |
| GTAAGTTGAATAAATTGAAG+AGG | 0.577941 | 1_4:+47958651 | None:intergenic |
| AACCAGCTCCATCCCCAACT+AGG | 0.580335 | 1_4:+47955577 | None:intergenic |
| AGAGCATTTCGGGCTTTAAG+GGG | 0.582500 | 1_4:-47957636 | Msa0166600:CDS |
| ATCTCCTCCTCAGCCTCAGG+TGG | 0.583117 | 1_4:+47958140 | None:intergenic |
| TGATATAATTCCATTACTAG+TGG | 0.586145 | 1_4:+47954929 | None:intergenic |
| AGTCTGCAAAAGCCAAGTCC+AGG | 0.592138 | 1_4:-47955165 | Msa0166600:CDS |
| CTTCGCCTGCCAGATCATCA+AGG | 0.592606 | 1_4:-47955060 | Msa0166600:CDS |
| GAAATTAATGCAATAATATG+GGG | 0.593741 | 1_4:-47958578 | Msa0166600:exon |
| CCAACAGCGAGCCAAAATCC+GGG | 0.594662 | 1_4:-47955415 | Msa0166600:CDS |
| TGCAGTCGGAGCGTGTTCGG+AGG | 0.597571 | 1_4:-47955273 | Msa0166600:CDS |
| GAGCTGGTTAGAACGTTGGA+TGG | 0.602368 | 1_4:-47955563 | Msa0166600:CDS |
| AGGTTGAGAGCACTAATGGA+AGG | 0.610005 | 1_4:-47957606 | Msa0166600:CDS |
| GATGGAGCTGGTTAGAACGT+TGG | 0.610918 | 1_4:-47955567 | Msa0166600:CDS |
| AAGCATGACGAGTGTGCAGT+CGG | 0.612598 | 1_4:-47955287 | Msa0166600:CDS |
| GCCTCAGGTGGATGAAAAGG+AGG | 0.614504 | 1_4:+47958152 | None:intergenic |
| CCTCACTATTGATCCAGCAA+TGG | 0.623634 | 1_4:+47955243 | None:intergenic |
| ACTGAATAAGGCTAGTCCAA+AGG | 0.624104 | 1_4:-47955338 | Msa0166600:CDS |
| CTGTTTGATTATATAACCTG+AGG | 0.625685 | 1_4:-47954970 | Msa0166600:exon |
| GAGCATTTCGGGCTTTAAGG+GGG | 0.629409 | 1_4:-47957635 | Msa0166600:CDS |
| CTAAAGTCTGCATAGAGCGG+AGG | 0.629714 | 1_4:+47957553 | None:intergenic |
| CATTGCTGGATCAATAGTGA+GGG | 0.633530 | 1_4:-47955242 | Msa0166600:CDS |
| TGTTGAAGTTGTACCAGATG+TGG | 0.634465 | 1_4:-47958078 | Msa0166600:CDS |
| TAAAGTCTGCATAGAGCGGA+GGG | 0.635485 | 1_4:+47957554 | None:intergenic |
| TATGATATGTGTGTTGTGTG+TGG | 0.637756 | 1_4:-47954551 | Msa0166600:three_prime_UTR |
| GACCTAAAGTCTGCATAGAG+CGG | 0.641744 | 1_4:+47957550 | None:intergenic |
| TGTTCAAACAGAAACTGTTG+AGG | 0.641908 | 1_4:-47958033 | Msa0166600:CDS |
| GGTTGAGAGCACTAATGGAA+GGG | 0.642674 | 1_4:-47957605 | Msa0166600:CDS |
| CCATTGCTGGATCAATAGTG+AGG | 0.642996 | 1_4:-47955243 | Msa0166600:CDS |
| GATCTTGGGAAGAGACAAAG+TGG | 0.645105 | 1_4:+47958789 | None:intergenic |
| GCGGCATTCAGGCCCACCAA+AGG | 0.652957 | 1_4:-47955038 | Msa0166600:CDS |
| GCAGAAATTACTGTTGGCAA+TGG | 0.656114 | 1_4:-47954998 | Msa0166600:CDS |
| CATAGAGCGGAGGGTACTAA+CGG | 0.661136 | 1_4:+47957563 | None:intergenic |
| TATGAGAAGAGAAAGAGCAA+TGG | 0.661509 | 1_4:-47957216 | Msa0166600:CDS |
| AATCCCAGATTCGTTCGAGG+CGG | 0.666163 | 1_4:-47957521 | Msa0166600:CDS |
| GATCCAACGAATCCTAGTTG+GGG | 0.666263 | 1_4:-47955589 | Msa0166600:CDS |
| CAAGTTACTAAGCAAGTACG+AGG | 0.670194 | 1_4:-47957243 | Msa0166600:CDS |
| TGCCAGTAAACCGAATGATG+AGG | 0.671626 | 1_4:-47957985 | Msa0166600:CDS |
| GGCAACCTGAACAATTGGAG+CGG | 0.673984 | 1_4:+47958004 | None:intergenic |
| TTTCAGCACTGGTAATGCCG+CGG | 0.683035 | 1_4:+47955485 | None:intergenic |
| CGCCTGCCAGATCATCAAGG+CGG | 0.686449 | 1_4:-47955057 | Msa0166600:CDS |
| ATTCTCATAACAGATTGGGG+AGG | 0.696674 | 1_4:-47957306 | Msa0166600:intron |
| AATTACTGTTGGCAATGGTG+TGG | 0.715956 | 1_4:-47954993 | Msa0166600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATCAATTTTATAATTG+AGG | + | chr1_4:47955428-47955447 | None:intergenic | 10.0% |
| !! | TAGAAATTAATGCAATAATA+TGG | - | chr1_4:47954709-47954728 | Msa0166600:three_prime_UTR | 15.0% |
| !! | AGAAATTAATGCAATAATAT+GGG | - | chr1_4:47954710-47954729 | Msa0166600:three_prime_UTR | 15.0% |
| !!! | AATTATTTTCATAACGTATT+CGG | + | chr1_4:47954907-47954926 | None:intergenic | 15.0% |
| !!! | ATTTTGTTTTGATATCATTT+AGG | - | chr1_4:47955625-47955644 | Msa0166600:CDS | 15.0% |
| !!! | CATAAAAATGTCATTTTTAT+CGG | + | chr1_4:47956444-47956463 | None:intergenic | 15.0% |
| !!! | TCATTTTCTATTTCTTTTTT+AGG | + | chr1_4:47957212-47957231 | None:intergenic | 15.0% |
| !! | TTTAAACATATATGATTTCT+TGG | + | chr1_4:47957441-47957460 | None:intergenic | 15.0% |
| !!! | TAAGTTGAATAAATTGAAGA+GGG | + | chr1_4:47954640-47954659 | None:intergenic | 20.0% |
| !! | GAAATTAATGCAATAATATG+GGG | - | chr1_4:47954711-47954730 | Msa0166600:three_prime_UTR | 20.0% |
| !!! | ATCTTTTGTGATAGAAATTT+AGG | - | chr1_4:47954961-47954980 | Msa0166600:three_prime_UTR | 20.0% |
| !! | ATGTTTAATCTCAATTATCT+GGG | - | chr1_4:47954999-47955018 | Msa0166600:CDS | 20.0% |
| !!! | TTTTATTCTGAAGTATATCA+GGG | + | chr1_4:47955888-47955907 | None:intergenic | 20.0% |
| !!! | ATTTTATTCTGAAGTATATC+AGG | + | chr1_4:47955889-47955908 | None:intergenic | 20.0% |
| !!! | TATGTTTGAATTTTAGCTTA+TGG | - | chr1_4:47955932-47955951 | Msa0166600:intron | 20.0% |
| !!! | AAATTTTTGCATATAAAGCA+TGG | - | chr1_4:47956331-47956350 | Msa0166600:intron | 20.0% |
| !! | TATGAAAAAAATAAGTGTCA+TGG | - | chr1_4:47956460-47956479 | Msa0166600:intron | 20.0% |
| !!! | TTAAATCTTGAGTTATTTTG+AGG | + | chr1_4:47956506-47956525 | None:intergenic | 20.0% |
| !! | AATAAAAACAACTTAAAGAG+AGG | + | chr1_4:47956861-47956880 | None:intergenic | 20.0% |
| !!! | TTTCTATTTCTTTTTTAGGT+GGG | + | chr1_4:47957208-47957227 | None:intergenic | 20.0% |
| !!! | TTTTCTATTTCTTTTTTAGG+TGG | + | chr1_4:47957209-47957228 | None:intergenic | 20.0% |
| !! | AAATTATGTTAGCAGAAAAT+AGG | + | chr1_4:47957555-47957574 | None:intergenic | 20.0% |
| !!! | TAGAAGTGTATATTTATCTT+AGG | + | chr1_4:47957627-47957646 | None:intergenic | 20.0% |
| !! | ATCTATAAATCCAATGTTTA+TGG | - | chr1_4:47957678-47957697 | Msa0166600:intron | 20.0% |
| !! | AAGAATATTTGTAGTATATC+TGG | - | chr1_4:47958778-47958797 | Msa0166600:five_prime_UTR | 20.0% |
| !! | AGAATATTTGTAGTATATCT+GGG | - | chr1_4:47958779-47958798 | Msa0166600:five_prime_UTR | 20.0% |
| ! | ATGTGATTAGATTAGATCTT+GGG | + | chr1_4:47954517-47954536 | None:intergenic | 25.0% |
| ! | AATGTGATTAGATTAGATCT+TGG | + | chr1_4:47954518-47954537 | None:intergenic | 25.0% |
| !! | GTAAGTTGAATAAATTGAAG+AGG | + | chr1_4:47954641-47954660 | None:intergenic | 25.0% |
| ! | CATGTTTAATCTCAATTATC+TGG | - | chr1_4:47954998-47955017 | Msa0166600:CDS | 25.0% |
| ! | ATTCAACACATAATTGTAAG+AGG | + | chr1_4:47955383-47955402 | None:intergenic | 25.0% |
| ! | AATGTGAATCCTTACAATTA+AGG | - | chr1_4:47955468-47955487 | Msa0166600:CDS | 25.0% |
| !!! | GAATTTTAGCTTATGGATTA+TGG | - | chr1_4:47955939-47955958 | Msa0166600:intron | 25.0% |
| !!! | TAAGAAGTTGCATTTGTTTT+AGG | - | chr1_4:47956131-47956150 | Msa0166600:intron | 25.0% |
| ! | TTTACACATAGTATAAAGCA+TGG | - | chr1_4:47956249-47956268 | Msa0166600:intron | 25.0% |
| !! | TTTTTGAACTGAAAGATCTA+AGG | - | chr1_4:47956280-47956299 | Msa0166600:intron | 25.0% |
| ! | TTTCATGTAATTTACCTTAC+TGG | + | chr1_4:47956314-47956333 | None:intergenic | 25.0% |
| ! | ACAAGATTTGACTAACAATT+CGG | + | chr1_4:47956400-47956419 | None:intergenic | 25.0% |
| ! | TTGTTAGTCAAATCTTGTTA+TGG | - | chr1_4:47956402-47956421 | Msa0166600:intron | 25.0% |
| !!! | CATTTTGATATTTCATAGCA+TGG | + | chr1_4:47956788-47956807 | None:intergenic | 25.0% |
| !!! | TTCTATTTCTTTTTTAGGTG+GGG | + | chr1_4:47957207-47957226 | None:intergenic | 25.0% |
| ! | CACATCTGATATAAAAATTG+TGG | + | chr1_4:47957244-47957263 | None:intergenic | 25.0% |
| !! | AATTTTGTAGATGAAAACTC+AGG | + | chr1_4:47957417-47957436 | None:intergenic | 25.0% |
| ! | TATTTATCTTAGGTCAAACT+TGG | + | chr1_4:47957617-47957636 | None:intergenic | 25.0% |
| ! | ACTTCTATTTGACAGAAAAA+CGG | - | chr1_4:47957640-47957659 | Msa0166600:CDS | 25.0% |
| ! | AATTGTCAAGAAACTGAATA+AGG | - | chr1_4:47957939-47957958 | Msa0166600:intron | 25.0% |
| ! | TTAAATGCAGAAATTACTGT+TGG | - | chr1_4:47958285-47958304 | Msa0166600:intron | 25.0% |
| ! | TGATATAATTCCATTACTAG+TGG | + | chr1_4:47958363-47958382 | None:intergenic | 25.0% |
| !! | CTAGTAATGGAATTATATCA+TGG | - | chr1_4:47958363-47958382 | Msa0166600:intron | 25.0% |
| ! | TGATAAGCTACACATAAATT+TGG | + | chr1_4:47958444-47958463 | None:intergenic | 25.0% |
| ! | TATTCATTTGCTTACTAATG+TGG | - | chr1_4:47958517-47958536 | Msa0166600:CDS | 25.0% |
| ! | AGAATCACAAATAAGAAATG+AGG | + | chr1_4:47958673-47958692 | None:intergenic | 25.0% |
| !! | TCTTTTATGTTACATTGTTC+TGG | - | chr1_4:47958710-47958729 | Msa0166600:five_prime_UTR | 25.0% |
| GAGAAGTTGAAGATAAAAGA+GGG | + | chr1_4:47954542-47954561 | None:intergenic | 30.0% | |
| AGAGAAGTTGAAGATAAAAG+AGG | + | chr1_4:47954543-47954562 | None:intergenic | 30.0% | |
| TTCACATTGGAAAACCAATT+TGG | + | chr1_4:47954746-47954765 | None:intergenic | 30.0% | |
| !!! | TGTTTGTTTTGTTTAGAGTC+AGG | + | chr1_4:47954782-47954801 | None:intergenic | 30.0% |
| CTCTAAACAAAACAAACATC+AGG | - | chr1_4:47954784-47954803 | Msa0166600:three_prime_UTR | 30.0% | |
| ATTATCTGGGAAGTTTCTTA+TGG | - | chr1_4:47955012-47955031 | Msa0166600:CDS | 30.0% | |
| ! | CTGATTTTGTAGAATTCAAG+TGG | - | chr1_4:47955044-47955063 | Msa0166600:CDS | 30.0% |
| GATCAAAGAAGAAATGGTTT+GGG | - | chr1_4:47955066-47955085 | Msa0166600:CDS | 30.0% | |
| !! | TCATGATTCAAACCACTTTT+CGG | - | chr1_4:47955336-47955355 | Msa0166600:CDS | 30.0% |
| CATACACATCCTTAATTGTA+AGG | + | chr1_4:47955480-47955499 | None:intergenic | 30.0% | |
| ATAACTTGGCATCATTAAAG+AGG | + | chr1_4:47955530-47955549 | None:intergenic | 30.0% | |
| TCCAAATTCTCATAACAGAT+TGG | - | chr1_4:47955978-47955997 | Msa0166600:intron | 30.0% | |
| CCAAATTCTCATAACAGATT+GGG | - | chr1_4:47955979-47955998 | Msa0166600:intron | 30.0% | |
| CAAATTCTCATAACAGATTG+GGG | - | chr1_4:47955980-47955999 | Msa0166600:intron | 30.0% | |
| ATGCAACTTCTTAAGAGAAA+TGG | + | chr1_4:47956124-47956143 | None:intergenic | 30.0% | |
| ! | AAATGAGAAAAGAGCATGTA+TGG | - | chr1_4:47956168-47956187 | Msa0166600:intron | 30.0% |
| TTGATGAACTGAAAGATCAA+AGG | - | chr1_4:47956195-47956214 | Msa0166600:intron | 30.0% | |
| CTGAAAGATCAAAGGAAAAA+TGG | - | chr1_4:47956203-47956222 | Msa0166600:intron | 30.0% | |
| TATATCTTCTGATTCACGAT+CGG | + | chr1_4:47956373-47956392 | None:intergenic | 30.0% | |
| GAAAAGTAGTTAGCTATATG+AGG | - | chr1_4:47956547-47956566 | Msa0166600:intron | 30.0% | |
| AAAATGTCTAGCTACTCTTA+AGG | - | chr1_4:47956579-47956598 | Msa0166600:intron | 30.0% | |
| TAACGAATCGGAATTTAATG+TGG | - | chr1_4:47956660-47956679 | Msa0166600:intron | 30.0% | |
| AACGAATCGGAATTTAATGT+GGG | - | chr1_4:47956661-47956680 | Msa0166600:intron | 30.0% | |
| TCCAAAATAGATACACACTT+AGG | - | chr1_4:47956691-47956710 | Msa0166600:intron | 30.0% | |
| ! | TCCTAAGTGTGTATCTATTT+TGG | + | chr1_4:47956695-47956714 | None:intergenic | 30.0% |
| TCTAGTATCAAATCGAGATA+CGG | - | chr1_4:47956735-47956754 | Msa0166600:intron | 30.0% | |
| ATATCAAAATGAGAATCCTG+AGG | - | chr1_4:47956797-47956816 | Msa0166600:intron | 30.0% | |
| TATCAAAATGAGAATCCTGA+GGG | - | chr1_4:47956798-47956817 | Msa0166600:intron | 30.0% | |
| AAAAACAACTTAAAGAGAGG+AGG | + | chr1_4:47956858-47956877 | None:intergenic | 30.0% | |
| ACACACAAGCTTAATAACTT+TGG | - | chr1_4:47956888-47956907 | Msa0166600:intron | 30.0% | |
| CACACAAGCTTAATAACTTT+GGG | - | chr1_4:47956889-47956908 | Msa0166600:intron | 30.0% | |
| !! | CTTTTGAGAATTACAGAAAG+TGG | - | chr1_4:47957032-47957051 | Msa0166600:intron | 30.0% |
| TCATGATTCATTAGCAAAAC+TGG | + | chr1_4:47957112-47957131 | None:intergenic | 30.0% | |
| GTAGTTTCAGATATATTTGC+CGG | + | chr1_4:47957149-47957168 | None:intergenic | 30.0% | |
| CTTACAAAATTAATCGACGT+GGG | + | chr1_4:47957389-47957408 | None:intergenic | 30.0% | |
| AAAGATCAAGAAACTCAAAC+TGG | + | chr1_4:47957579-47957598 | None:intergenic | 30.0% | |
| CTTCTATTTGACAGAAAAAC+GGG | - | chr1_4:47957641-47957660 | Msa0166600:CDS | 30.0% | |
| CTGTTTGATTATATAACCTG+AGG | - | chr1_4:47958319-47958338 | Msa0166600:intron | 30.0% | |
| TCTCTCTTGCATTTCACTTT+AGG | - | chr1_4:47954602-47954621 | Msa0166600:three_prime_UTR | 35.0% | |
| ACTAAGAGCTTTCTTCACAT+TGG | + | chr1_4:47954759-47954778 | None:intergenic | 35.0% | |
| ATTCTCACAAGTGACTATGT+CGG | + | chr1_4:47954847-47954866 | None:intergenic | 35.0% | |
| CAAGTGGATCAAAGAAGAAA+TGG | - | chr1_4:47955060-47955079 | Msa0166600:CDS | 35.0% | |
| GGATCAAAGAAGAAATGGTT+TGG | - | chr1_4:47955065-47955084 | Msa0166600:CDS | 35.0% | |
| TCTGTTTGAACATCAGAAAC+AGG | + | chr1_4:47955248-47955267 | None:intergenic | 35.0% | |
| TGTTCAAACAGAAACTGTTG+AGG | - | chr1_4:47955256-47955275 | Msa0166600:CDS | 35.0% | |
| ! | CTTTCTTTTGCAGCAATTGT+CGG | + | chr1_4:47955570-47955589 | None:intergenic | 35.0% |
| !! | TTTAGGCAAGAAGAGCATTT+CGG | - | chr1_4:47955642-47955661 | Msa0166600:intron | 35.0% |
| CCCAATCTGTTATGAGAATT+TGG | + | chr1_4:47955982-47956001 | None:intergenic | 35.0% | |
| TATGAGAAGAGAAAGAGCAA+TGG | - | chr1_4:47956073-47956092 | Msa0166600:intron | 35.0% | |
| !!! | GCATTTGTTTTAGGTTAGTC+AGG | - | chr1_4:47956140-47956159 | Msa0166600:intron | 35.0% |
| CAAAGGAAAAATGGCTAGTA+AGG | - | chr1_4:47956212-47956231 | Msa0166600:intron | 35.0% | |
| CTAAGGAAAAATGACCAGTA+AGG | - | chr1_4:47956297-47956316 | Msa0166600:intron | 35.0% | |
| GGGAGAAAATCAAACTTAAG+AGG | + | chr1_4:47956959-47956978 | None:intergenic | 35.0% | |
| ! | TAGCAAAACTGGTTCATACT+AGG | + | chr1_4:47957101-47957120 | None:intergenic | 35.0% |
| !!! | TTTCTTTTTTAGGTGGGGTA+GGG | + | chr1_4:47957202-47957221 | None:intergenic | 35.0% |
| !!! | ATTTCTTTTTTAGGTGGGGT+AGG | + | chr1_4:47957203-47957222 | None:intergenic | 35.0% |
| ACAAATCCTCTAGTCTACTT+TGG | - | chr1_4:47957266-47957285 | Msa0166600:CDS | 35.0% | |
| GCTTACAAAATTAATCGACG+TGG | + | chr1_4:47957390-47957409 | None:intergenic | 35.0% | |
| TTCGTTGGATCCATAAACAT+TGG | + | chr1_4:47957691-47957710 | None:intergenic | 35.0% | |
| ! | AATGATTTTCGGAATTGAGC+TGG | + | chr1_4:47957852-47957871 | None:intergenic | 35.0% |
| !! | TTTGAGTTGGATTGGAAGTT+AGG | + | chr1_4:47957904-47957923 | None:intergenic | 35.0% |
| TTCAGTTTCTTGACAATTGC+TGG | + | chr1_4:47957937-47957956 | None:intergenic | 35.0% | |
| AGAACACTACACCAGAAAAA+GGG | - | chr1_4:47958169-47958188 | Msa0166600:CDS | 35.0% | |
| ! | CCTTTGGAAATGCAAAGAAA+CGG | - | chr1_4:47958193-47958212 | Msa0166600:CDS | 35.0% |
| ! | TTTAAGCTGCTTTCTACCTT+TGG | + | chr1_4:47958270-47958289 | None:intergenic | 35.0% |
| ! | TACTTTGCATTCTTTTCCTC+AGG | + | chr1_4:47958338-47958357 | None:intergenic | 35.0% |
| TGTGTAGCTTATCATTTCCT+TGG | - | chr1_4:47958450-47958469 | Msa0166600:intron | 35.0% | |
| CTTACTAATGTGGTTCATGA+TGG | - | chr1_4:47958527-47958546 | Msa0166600:CDS | 35.0% | |
| GAATGATAACAGTCCCAAAT+GGG | + | chr1_4:47958600-47958619 | None:intergenic | 35.0% | |
| AGAATGATAACAGTCCCAAA+TGG | + | chr1_4:47958601-47958620 | None:intergenic | 35.0% | |
| TATGATATGTGTGTTGTGTG+TGG | - | chr1_4:47958738-47958757 | Msa0166600:five_prime_UTR | 35.0% | |
| TTTGTAGTATATCTGGGAAG+TGG | - | chr1_4:47958785-47958804 | Msa0166600:five_prime_UTR | 35.0% | |
| TGGGGAAGAATAAGCCAAAT+TGG | - | chr1_4:47954729-47954748 | Msa0166600:three_prime_UTR | 40.0% | |
| ATAGTCACTTGTGAGAATGC+TGG | - | chr1_4:47954849-47954868 | Msa0166600:three_prime_UTR | 40.0% | |
| TGTTGAAGTTGTACCAGATG+TGG | - | chr1_4:47955211-47955230 | Msa0166600:CDS | 40.0% | |
| TTACTGGCAACCTGAACAAT+TGG | + | chr1_4:47955293-47955312 | None:intergenic | 40.0% | |
| AACCTCATCATTCGGTTTAC+TGG | + | chr1_4:47955309-47955328 | None:intergenic | 40.0% | |
| TAAACCGAATGATGAGGTTG+CGG | - | chr1_4:47955310-47955329 | Msa0166600:CDS | 40.0% | |
| CCACTAATGACAGCATAACT+TGG | + | chr1_4:47955544-47955563 | None:intergenic | 40.0% | |
| CCAAGTTATGCTGTCATTAG+TGG | - | chr1_4:47955541-47955560 | Msa0166600:CDS | 40.0% | |
| !! | TTAGGCAAGAAGAGCATTTC+GGG | - | chr1_4:47955643-47955662 | Msa0166600:intron | 40.0% |
| !! | AAGAGCATTTCGGGCTTTAA+GGG | - | chr1_4:47955652-47955671 | Msa0166600:intron | 40.0% |
| CACAAAAGAGCTAGAGATAC+AGG | - | chr1_4:47955844-47955863 | Msa0166600:intron | 40.0% | |
| TAGAGATACAGGTCTCTGAA+GGG | - | chr1_4:47955855-47955874 | Msa0166600:intron | 40.0% | |
| ATTCTCATAACAGATTGGGG+AGG | - | chr1_4:47955983-47956002 | Msa0166600:intron | 40.0% | |
| ATAACAGATTGGGGAGGAAT+GGG | - | chr1_4:47955989-47956008 | Msa0166600:intron | 40.0% | |
| CTCGTACTTGCTTAGTAACT+TGG | + | chr1_4:47956048-47956067 | None:intergenic | 40.0% | |
| CAAGTTACTAAGCAAGTACG+AGG | - | chr1_4:47956046-47956065 | Msa0166600:intron | 40.0% | |
| GGCTTATTCATTCACTCATC+AGG | - | chr1_4:47956094-47956113 | Msa0166600:intron | 40.0% | |
| GTCTAGCTACTCTTAAGGTT+AGG | - | chr1_4:47956584-47956603 | Msa0166600:intron | 40.0% | |
| TGAGATTTATCGCAGTGAAC+CGG | - | chr1_4:47956628-47956647 | Msa0166600:intron | 40.0% | |
| ATAGTGTGACAATAACCCTC+AGG | + | chr1_4:47956816-47956835 | None:intergenic | 40.0% | |
| TACAGAACACATCAGGGAAA+AGG | + | chr1_4:47956994-47957013 | None:intergenic | 40.0% | |
| CTTCGTTACAGAACACATCA+GGG | + | chr1_4:47957000-47957019 | None:intergenic | 40.0% | |
| ACTTCGTTACAGAACACATC+AGG | + | chr1_4:47957001-47957020 | None:intergenic | 40.0% | |
| TTCAGATATATTTGCCGGTC+AGG | + | chr1_4:47957144-47957163 | None:intergenic | 40.0% | |
| !!! | TTCTTTTTTAGGTGGGGTAG+GGG | + | chr1_4:47957201-47957220 | None:intergenic | 40.0% |
| CATGAACCAAAGTAGACTAG+AGG | + | chr1_4:47957275-47957294 | None:intergenic | 40.0% | |
| ! | CTCTAGTCTACTTTGGTTCA+TGG | - | chr1_4:47957273-47957292 | Msa0166600:CDS | 40.0% |
| CTATTTGACAGAAAAACGGG+CGG | - | chr1_4:47957644-47957663 | Msa0166600:CDS | 40.0% | |
| AATTGTTCTCCTTCTCCATC+AGG | + | chr1_4:47957765-47957784 | None:intergenic | 40.0% | |
| TCTGTAAAAAGTTCGATCCG+CGG | - | chr1_4:47957787-47957806 | Msa0166600:intron | 40.0% | |
| !! | TGATTTGCTGATTTCAGCAC+TGG | + | chr1_4:47957818-47957837 | None:intergenic | 40.0% |
| ! | CGCTGTTGGAGAATGATTTT+CGG | + | chr1_4:47957863-47957882 | None:intergenic | 40.0% |
| !! | TTCTTGACAATTGCTGGCTT+GGG | + | chr1_4:47957931-47957950 | None:intergenic | 40.0% |
| ! | TTTCTTGACAATTGCTGGCT+TGG | + | chr1_4:47957932-47957951 | None:intergenic | 40.0% |
| ! | ACTGAATAAGGCTAGTCCAA+AGG | - | chr1_4:47957951-47957970 | Msa0166600:CDS | 40.0% |
| TCCAAAGGTGAGCTGTATTA+TGG | - | chr1_4:47957966-47957985 | Msa0166600:CDS | 40.0% | |
| TCCATAATACAGCTCACCTT+TGG | + | chr1_4:47957970-47957989 | None:intergenic | 40.0% | |
| CATTGCTGGATCAATAGTGA+GGG | - | chr1_4:47958047-47958066 | Msa0166600:CDS | 40.0% | |
| TCCATCAGTTCCAAGTTACA+TGG | - | chr1_4:47958092-47958111 | Msa0166600:CDS | 40.0% | |
| ACCATGTAACTTGGAACTGA+TGG | + | chr1_4:47958096-47958115 | None:intergenic | 40.0% | |
| TTAGTTGGCACCATGTAACT+TGG | + | chr1_4:47958105-47958124 | None:intergenic | 40.0% | |
| !! | TTGGCTTTTGCAGACTTAGT+TGG | + | chr1_4:47958120-47958139 | None:intergenic | 40.0% |
| GAGAACACTACACCAGAAAA+AGG | - | chr1_4:47958168-47958187 | Msa0166600:CDS | 40.0% | |
| ! | TTTCCAAAGGACCCTTTTTC+TGG | + | chr1_4:47958183-47958202 | None:intergenic | 40.0% |
| CCGTTTCTTTGCATTTCCAA+AGG | + | chr1_4:47958196-47958215 | None:intergenic | 40.0% | |
| AAAGAAACGGCTTAACTTCC+CGG | - | chr1_4:47958206-47958225 | Msa0166600:CDS | 40.0% | |
| GCAGAAATTACTGTTGGCAA+TGG | - | chr1_4:47958291-47958310 | Msa0166600:intron | 40.0% | |
| AATTACTGTTGGCAATGGTG+TGG | - | chr1_4:47958296-47958315 | Msa0166600:intron | 40.0% | |
| ! | GCAAAGTACTCCACTAGTAA+TGG | - | chr1_4:47958350-47958369 | Msa0166600:intron | 40.0% |
| GTAGCTTATCATTTCCTTGG+AGG | - | chr1_4:47958453-47958472 | Msa0166600:intron | 40.0% | |
| AGTAAAGAAAACAGCCTCCA+AGG | + | chr1_4:47958470-47958489 | None:intergenic | 40.0% | |
| GATCTTGGGAAGAGACAAAG+TGG | + | chr1_4:47954503-47954522 | None:intergenic | 45.0% | |
| GGTACATCAACATCCACATC+TGG | + | chr1_4:47955227-47955246 | None:intergenic | 45.0% | |
| TGCCAGTAAACCGAATGATG+AGG | - | chr1_4:47955304-47955323 | Msa0166600:CDS | 45.0% | |
| ATTGCCGCAACCTCATCATT+CGG | + | chr1_4:47955317-47955336 | None:intergenic | 45.0% | |
| !! | AACCACTTTTCGGCGATACT+TGG | - | chr1_4:47955346-47955365 | Msa0166600:CDS | 45.0% |
| ! | TACCAAGTATCGCCGAAAAG+TGG | + | chr1_4:47955351-47955370 | None:intergenic | 45.0% |
| !! | GAAGAGCATTTCGGGCTTTA+AGG | - | chr1_4:47955651-47955670 | Msa0166600:intron | 45.0% |
| !! | AGAGCATTTCGGGCTTTAAG+GGG | - | chr1_4:47955653-47955672 | Msa0166600:intron | 45.0% |
| !! | GAACAGGTTGAGAGCACTAA+TGG | - | chr1_4:47955679-47955698 | Msa0166600:intron | 45.0% |
| !! | AGGTTGAGAGCACTAATGGA+AGG | - | chr1_4:47955683-47955702 | Msa0166600:intron | 45.0% |
| !! | GGTTGAGAGCACTAATGGAA+GGG | - | chr1_4:47955684-47955703 | Msa0166600:intron | 45.0% |
| TAAAGTCTGCATAGAGCGGA+GGG | + | chr1_4:47955738-47955757 | None:intergenic | 45.0% | |
| GACCTAAAGTCTGCATAGAG+CGG | + | chr1_4:47955742-47955761 | None:intergenic | 45.0% | |
| CTAGAGATACAGGTCTCTGA+AGG | - | chr1_4:47955854-47955873 | Msa0166600:intron | 45.0% | |
| CATAACAGATTGGGGAGGAA+TGG | - | chr1_4:47955988-47956007 | Msa0166600:intron | 45.0% | |
| GAGATTTATCGCAGTGAACC+GGG | - | chr1_4:47956629-47956648 | Msa0166600:intron | 45.0% | |
| CGATTCGTTATGATGAGTCC+CGG | + | chr1_4:47956650-47956669 | None:intergenic | 45.0% | |
| CGGGACTCATCATAACGAAT+CGG | - | chr1_4:47956648-47956667 | Msa0166600:intron | 45.0% | |
| ACTTAGGATTCATGCCGTGT+GGG | - | chr1_4:47956707-47956726 | Msa0166600:intron | 45.0% | |
| GATACTAGACAGAACCCACA+CGG | + | chr1_4:47956724-47956743 | None:intergenic | 45.0% | |
| ! | AAGAGGCATAAGCAGATGCT+AGG | + | chr1_4:47956942-47956961 | None:intergenic | 45.0% |
| !! | AGTTTGATTTTCTCCCTGCC+TGG | - | chr1_4:47956963-47956982 | Msa0166600:intron | 45.0% |
| ATCAGGGAAAAGGAATCACC+AGG | + | chr1_4:47956984-47957003 | None:intergenic | 45.0% | |
| CGTAGTACCTCTTTCTGATC+TGG | - | chr1_4:47957074-47957093 | Msa0166600:intron | 45.0% | |
| ACTAGGTCCAGATCAGAAAG+AGG | + | chr1_4:47957084-47957103 | None:intergenic | 45.0% | |
| GTGAGATTGCCAGATATACC+TGG | - | chr1_4:47957513-47957532 | Msa0166600:CDS | 45.0% | |
| CCAGATATACCTGGTGAACT+CGG | - | chr1_4:47957522-47957541 | Msa0166600:CDS | 45.0% | |
| TGGATCCAACGAATCCTAGT+TGG | - | chr1_4:47957698-47957717 | Msa0166600:intron | 45.0% | |
| GGATCCAACGAATCCTAGTT+GGG | - | chr1_4:47957699-47957718 | Msa0166600:intron | 45.0% | |
| GATCCAACGAATCCTAGTTG+GGG | - | chr1_4:47957700-47957719 | Msa0166600:intron | 45.0% | |
| ! | AGTTAGGTGAACCCGGATTT+TGG | + | chr1_4:47957888-47957907 | None:intergenic | 45.0% |
| GATTGGAAGTTAGGTGAACC+CGG | + | chr1_4:47957895-47957914 | None:intergenic | 45.0% | |
| CCTCACTATTGATCCAGCAA+TGG | + | chr1_4:47958049-47958068 | None:intergenic | 45.0% | |
| CCATTGCTGGATCAATAGTG+AGG | - | chr1_4:47958046-47958065 | Msa0166600:CDS | 45.0% | |
| ACACCAGAAAAAGGGTCCTT+TGG | - | chr1_4:47958177-47958196 | Msa0166600:CDS | 45.0% | |
| ! | AGCTGCTTTCTACCTTTGGT+GGG | + | chr1_4:47958266-47958285 | None:intergenic | 45.0% |
| ! | AAGCTGCTTTCTACCTTTGG+TGG | + | chr1_4:47958267-47958286 | None:intergenic | 45.0% |
| !! | ATCTCGAGAGCATTCCCATT+TGG | - | chr1_4:47958583-47958602 | Msa0166600:exon | 45.0% |
| !! | TCTCGAGAGCATTCCCATTT+GGG | - | chr1_4:47958584-47958603 | Msa0166600:five_prime_UTR | 45.0% |
| TATGTGTGTTGTGTGTGGCT+TGG | - | chr1_4:47958743-47958762 | Msa0166600:five_prime_UTR | 45.0% | |
| !! | TGAATAAATAAAATAAAAAA+TGG | + | chr1_4:47958420-47958439 | None:intergenic | 5.0% |
| !! | GGAGGTGCTTGATCAGTTTC+TGG | + | chr1_4:47955122-47955141 | None:intergenic | 50.0% |
| ! | ACCTCCTTTTCATCCACCTG+AGG | - | chr1_4:47955136-47955155 | Msa0166600:CDS | 50.0% |
| TCAGCCTCAGGTGGATGAAA+AGG | + | chr1_4:47955143-47955162 | None:intergenic | 50.0% | |
| ! | TTTTCATCCACCTGAGGCTG+AGG | - | chr1_4:47955142-47955161 | Msa0166600:CDS | 50.0% |
| ATAATCTCCTCCTCAGCCTC+AGG | + | chr1_4:47955155-47955174 | None:intergenic | 50.0% | |
| TCAAGCCGCTCCAATTGTTC+AGG | - | chr1_4:47955280-47955299 | Msa0166600:CDS | 50.0% | |
| GGCAACCTGAACAATTGGAG+CGG | + | chr1_4:47955288-47955307 | None:intergenic | 50.0% | |
| !! | GAGCATTTCGGGCTTTAAGG+GGG | - | chr1_4:47955654-47955673 | Msa0166600:intron | 50.0% |
| !! | CATAGAGCGGAGGGTACTAA+CGG | + | chr1_4:47955729-47955748 | None:intergenic | 50.0% |
| CTAAAGTCTGCATAGAGCGG+AGG | + | chr1_4:47955739-47955758 | None:intergenic | 50.0% | |
| CTCCGCTCTATGCAGACTTT+AGG | - | chr1_4:47955737-47955756 | Msa0166600:intron | 50.0% | |
| TGCAATCCCAGATTCGTTCG+AGG | - | chr1_4:47955765-47955784 | Msa0166600:intron | 50.0% | |
| AATCCCAGATTCGTTCGAGG+CGG | - | chr1_4:47955768-47955787 | Msa0166600:intron | 50.0% | |
| CACTTAGGATTCATGCCGTG+TGG | - | chr1_4:47956706-47956725 | Msa0166600:intron | 50.0% | |
| GGAAAAGGAATCACCAGGCA+GGG | + | chr1_4:47956979-47956998 | None:intergenic | 50.0% | |
| CATGAGTATTCCAGCCTGAC+CGG | - | chr1_4:47957127-47957146 | Msa0166600:intron | 50.0% | |
| GATATATTTGCCGGTCAGGC+TGG | + | chr1_4:47957140-47957159 | None:intergenic | 50.0% | |
| CCGAGTTCACCAGGTATATC+TGG | + | chr1_4:47957525-47957544 | None:intergenic | 50.0% | |
| GGTAAATCACCGAGTTCACC+AGG | + | chr1_4:47957534-47957553 | None:intergenic | 50.0% | |
| CATCCCCAACTAGGATTCGT+TGG | + | chr1_4:47957706-47957725 | None:intergenic | 50.0% | |
| CAACGAATCCTAGTTGGGGA+TGG | - | chr1_4:47957704-47957723 | Msa0166600:intron | 50.0% | |
| GATGGAGCTGGTTAGAACGT+TGG | - | chr1_4:47957722-47957741 | Msa0166600:intron | 50.0% | |
| GAGCTGGTTAGAACGTTGGA+TGG | - | chr1_4:47957726-47957745 | Msa0166600:intron | 50.0% | |
| ! | CTTCTCCATCAGGCTTTGGT+TGG | + | chr1_4:47957755-47957774 | None:intergenic | 50.0% |
| CAACCAAAGCCTGATGGAGA+AGG | - | chr1_4:47957753-47957772 | Msa0166600:intron | 50.0% | |
| TCTCCTTCTCCATCAGGCTT+TGG | + | chr1_4:47957759-47957778 | None:intergenic | 50.0% | |
| !! | TTTCAGCACTGGTAATGCCG+CGG | + | chr1_4:47957807-47957826 | None:intergenic | 50.0% |
| TCCAACAGCGAGCCAAAATC+CGG | - | chr1_4:47957873-47957892 | Msa0166600:intron | 50.0% | |
| !! | TGGGAGGCTTTGAGTTGGAT+TGG | + | chr1_4:47957912-47957931 | None:intergenic | 50.0% |
| !! | TTGACAATTGCTGGCTTGGG+AGG | + | chr1_4:47957928-47957947 | None:intergenic | 50.0% |
| ! | CTGCACACTCGTCATGCTTT+TGG | + | chr1_4:47958001-47958020 | None:intergenic | 50.0% |
| AAGCATGACGAGTGTGCAGT+CGG | - | chr1_4:47958002-47958021 | Msa0166600:CDS | 50.0% | |
| AGTCTGCAAAAGCCAAGTCC+AGG | - | chr1_4:47958124-47958143 | Msa0166600:CDS | 50.0% | |
| TGGACTTTGCAACCTGGACT+TGG | + | chr1_4:47958139-47958158 | None:intergenic | 50.0% | |
| !! | AGCTGATGGACTTTGCAACC+TGG | + | chr1_4:47958145-47958164 | None:intergenic | 50.0% |
| GTAGTGTTCTCTGCAGCTGA+TGG | + | chr1_4:47958159-47958178 | None:intergenic | 50.0% | |
| ! | TGAATGCCGCCTTGATGATC+TGG | + | chr1_4:47958241-47958260 | None:intergenic | 50.0% |
| AGATCATCAAGGCGGCATTC+AGG | - | chr1_4:47958240-47958259 | Msa0166600:intron | 50.0% | |
| GCCTCAGGTGGATGAAAAGG+AGG | + | chr1_4:47955140-47955159 | None:intergenic | 55.0% | |
| AGGGCCAGTCGTAAAACGTC+AGG | - | chr1_4:47955703-47955722 | Msa0166600:intron | 55.0% | |
| ! | ACGGCCTGACGTTTTACGAC+TGG | + | chr1_4:47955710-47955729 | None:intergenic | 55.0% |
| ATCCCAGATTCGTTCGAGGC+GGG | - | chr1_4:47955769-47955788 | Msa0166600:intron | 55.0% | |
| GGGAAAAGGAATCACCAGGC+AGG | + | chr1_4:47956980-47956999 | None:intergenic | 55.0% | |
| ATCCTAGTTGGGGATGGAGC+TGG | - | chr1_4:47957710-47957729 | Msa0166600:intron | 55.0% | |
| AACCAGCTCCATCCCCAACT+AGG | + | chr1_4:47957715-47957734 | None:intergenic | 55.0% | |
| CCAACAGCGAGCCAAAATCC+GGG | - | chr1_4:47957874-47957893 | Msa0166600:intron | 55.0% | |
| !! | TGGCTTGGGAGGCTTTGAGT+TGG | + | chr1_4:47957917-47957936 | None:intergenic | 55.0% |
| CTTCGCCTGCCAGATCATCA+AGG | - | chr1_4:47958229-47958248 | Msa0166600:CDS | 55.0% | |
| TCATCCACCTGAGGCTGAGG+AGG | - | chr1_4:47955145-47955164 | Msa0166600:CDS | 60.0% | |
| ATCTCCTCCTCAGCCTCAGG+TGG | + | chr1_4:47955152-47955171 | None:intergenic | 60.0% | |
| !! | GGGCTTTAAGGGGGCTGAAC+AGG | - | chr1_4:47955663-47955682 | Msa0166600:intron | 60.0% |
| GACCCGCCTCGAACGAATCT+GGG | + | chr1_4:47955774-47955793 | None:intergenic | 60.0% | |
| TGACCCGCCTCGAACGAATC+TGG | + | chr1_4:47955775-47955794 | None:intergenic | 60.0% | |
| AGATTCGTTCGAGGCGGGTC+AGG | - | chr1_4:47955774-47955793 | Msa0166600:intron | 60.0% | |
| GAGGCGGGTCAGGATGTTAG+AGG | - | chr1_4:47955784-47955803 | Msa0166600:intron | 60.0% | |
| GGCAGCCAACCAAAGCCTGA+TGG | - | chr1_4:47957747-47957766 | Msa0166600:intron | 60.0% | |
| !!! | CCCGGATTTTGGCTCGCTGT+TGG | + | chr1_4:47957877-47957896 | None:intergenic | 60.0% |
| GTGTGCAGTCGGAGCGTGTT+CGG | - | chr1_4:47958013-47958032 | Msa0166600:CDS | 60.0% | |
| ATGATCTGGCAGGCGAAGCC+GGG | + | chr1_4:47958227-47958246 | None:intergenic | 60.0% | |
| GATGATCTGGCAGGCGAAGC+CGG | + | chr1_4:47958228-47958247 | None:intergenic | 60.0% | |
| CGCCTGCCAGATCATCAAGG+CGG | - | chr1_4:47958232-47958251 | Msa0166600:CDS | 60.0% | |
| ! | TGCCGCCTTGATGATCTGGC+AGG | + | chr1_4:47958237-47958256 | None:intergenic | 60.0% |
| TGCAGTCGGAGCGTGTTCGG+AGG | - | chr1_4:47958016-47958035 | Msa0166600:CDS | 65.0% | |
| AGTCGGAGCGTGTTCGGAGG+AGG | - | chr1_4:47958019-47958038 | Msa0166600:CDS | 65.0% | |
| !! | CGGAGGAGGCACTCCATTGC+TGG | - | chr1_4:47958033-47958052 | Msa0166600:CDS | 65.0% |
| GCGGCATTCAGGCCCACCAA+AGG | - | chr1_4:47958251-47958270 | Msa0166600:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 47954492 | 47958819 | 47954492 | ID=Msa0166600;Name=Msa0166600 |
| chr1_4 | mRNA | 47954492 | 47958819 | 47954492 | ID=Msa0166600-mRNA-1;Parent=Msa0166600;Name=Msa0166600-mRNA-1;_AED=0.03;_eAED=0.03;_QI=236|1|1|1|1|1|5|493|466 |
| chr1_4 | exon | 47954492 | 47955656 | 47954492 | ID=Msa0166600-mRNA-1:exon:13962;Parent=Msa0166600-mRNA-1 |
| chr1_4 | exon | 47957196 | 47957315 | 47957196 | ID=Msa0166600-mRNA-1:exon:13961;Parent=Msa0166600-mRNA-1 |
| chr1_4 | exon | 47957446 | 47957664 | 47957446 | ID=Msa0166600-mRNA-1:exon:13960;Parent=Msa0166600-mRNA-1 |
| chr1_4 | exon | 47957944 | 47958255 | 47957944 | ID=Msa0166600-mRNA-1:exon:13959;Parent=Msa0166600-mRNA-1 |
| chr1_4 | exon | 47958506 | 47958819 | 47958506 | ID=Msa0166600-mRNA-1:exon:13958;Parent=Msa0166600-mRNA-1 |
| chr1_4 | five_prime_UTR | 47958584 | 47958819 | 47958584 | ID=Msa0166600-mRNA-1:five_prime_utr;Parent=Msa0166600-mRNA-1 |
| chr1_4 | CDS | 47958506 | 47958583 | 47958506 | ID=Msa0166600-mRNA-1:cds;Parent=Msa0166600-mRNA-1 |
| chr1_4 | CDS | 47957944 | 47958255 | 47957944 | ID=Msa0166600-mRNA-1:cds;Parent=Msa0166600-mRNA-1 |
| chr1_4 | CDS | 47957446 | 47957664 | 47957446 | ID=Msa0166600-mRNA-1:cds;Parent=Msa0166600-mRNA-1 |
| chr1_4 | CDS | 47957196 | 47957315 | 47957196 | ID=Msa0166600-mRNA-1:cds;Parent=Msa0166600-mRNA-1 |
| chr1_4 | CDS | 47954985 | 47955656 | 47954985 | ID=Msa0166600-mRNA-1:cds;Parent=Msa0166600-mRNA-1 |
| chr1_4 | three_prime_UTR | 47954492 | 47954984 | 47954492 | ID=Msa0166600-mRNA-1:three_prime_utr;Parent=Msa0166600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
