Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0177540 | P93324.1 | 98.925 | 372 | 4 | 0 | 1 | 372 | 1 | 372 | 0.0 | 767 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0177540 | sp|P93324|CHOMT_MEDSA | 98.925 | 372 | 4 | 0 | 1 | 372 | 1 | 372 | 0.0 | 767 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0177540 | A0A072VZR2 | 97.581 | 372 | 9 | 0 | 1 | 372 | 1 | 372 | 0.0 | 758 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046390 | Msa0177540 | 0.810202 | 1.296093e-50 | -8.615850e-47 |
| Msa0085110 | Msa0177540 | 0.803031 | 4.232930e-49 | -8.615850e-47 |
| Msa0177540 | Msa0177550 | 0.880281 | 6.247161e-70 | -8.615850e-47 |
| Msa0177540 | Msa0584360 | 0.803147 | 4.004576e-49 | -8.615850e-47 |
| Msa0177540 | Msa1341030 | 0.811552 | 6.612874e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0177540 | MtrunA17_Chr1g0200491 | 97.581 | 372 | 9 | 0 | 1 | 372 | 1 | 372 | 0.0 | 758 |
| Msa0177540 | MtrunA17_Chr7g0218131 | 65.684 | 373 | 124 | 3 | 1 | 372 | 1 | 370 | 0.0 | 507 |
| Msa0177540 | MtrunA17_Chr7g0218261 | 64.110 | 365 | 128 | 2 | 8 | 372 | 7 | 368 | 8.14e-173 | 486 |
| Msa0177540 | MtrunA17_Chr7g0218211 | 61.749 | 366 | 136 | 3 | 8 | 372 | 7 | 369 | 6.98e-167 | 471 |
| Msa0177540 | MtrunA17_Chr7g0218181 | 61.308 | 367 | 133 | 3 | 8 | 372 | 8 | 367 | 2.22e-165 | 467 |
| Msa0177540 | MtrunA17_Chr7g0218301 | 59.043 | 376 | 149 | 3 | 1 | 372 | 1 | 375 | 1.16e-160 | 455 |
| Msa0177540 | MtrunA17_Chr2g0307521 | 61.756 | 353 | 130 | 3 | 21 | 372 | 15 | 363 | 1.81e-160 | 454 |
| Msa0177540 | MtrunA17_Chr7g0218271 | 57.979 | 376 | 153 | 3 | 1 | 372 | 1 | 375 | 4.83e-159 | 451 |
| Msa0177540 | MtrunA17_Chr3g0085201 | 57.895 | 361 | 147 | 4 | 13 | 372 | 1 | 357 | 2.27e-144 | 413 |
| Msa0177540 | MtrunA17_Chr3g0085211 | 56.941 | 353 | 147 | 4 | 21 | 372 | 22 | 370 | 6.44e-141 | 405 |
| Msa0177540 | MtrunA17_Chr1g0163601 | 52.973 | 370 | 166 | 6 | 7 | 372 | 5 | 370 | 2.78e-135 | 390 |
| Msa0177540 | MtrunA17_Chr1g0163611 | 51.630 | 368 | 171 | 5 | 9 | 372 | 6 | 370 | 4.24e-134 | 387 |
| Msa0177540 | MtrunA17_Chr1g0163621 | 52.011 | 373 | 164 | 6 | 12 | 372 | 15 | 384 | 4.85e-129 | 375 |
| Msa0177540 | MtrunA17_Chr3g0128011 | 49.176 | 364 | 178 | 6 | 10 | 372 | 60 | 417 | 1.38e-119 | 352 |
| Msa0177540 | MtrunA17_Chr5g0448091 | 45.480 | 354 | 188 | 5 | 20 | 372 | 14 | 363 | 5.31e-103 | 308 |
| Msa0177540 | MtrunA17_Chr7g0276401 | 42.896 | 366 | 202 | 6 | 8 | 372 | 16 | 375 | 5.44e-92 | 280 |
| Msa0177540 | MtrunA17_Chr8g0367441 | 40.720 | 361 | 201 | 8 | 18 | 372 | 24 | 377 | 1.52e-85 | 264 |
| Msa0177540 | MtrunA17_Chr7g0276411 | 39.237 | 367 | 208 | 8 | 13 | 372 | 4 | 362 | 1.18e-84 | 261 |
| Msa0177540 | MtrunA17_Chr8g0367451 | 39.889 | 361 | 204 | 8 | 18 | 372 | 23 | 376 | 7.35e-83 | 257 |
| Msa0177540 | MtrunA17_Chr8g0367491 | 39.489 | 352 | 201 | 7 | 26 | 372 | 32 | 376 | 7.60e-81 | 252 |
| Msa0177540 | MtrunA17_Chr8g0367501 | 39.295 | 369 | 211 | 8 | 11 | 372 | 3 | 365 | 5.73e-77 | 243 |
| Msa0177540 | MtrunA17_Chr8g0367381 | 39.634 | 328 | 167 | 8 | 18 | 339 | 24 | 326 | 4.96e-71 | 225 |
| Msa0177540 | MtrunA17_Chr8g0345851 | 44.487 | 263 | 143 | 3 | 111 | 372 | 30 | 290 | 2.29e-70 | 222 |
| Msa0177540 | MtrunA17_Chr3g0130011 | 36.800 | 375 | 208 | 11 | 9 | 372 | 2 | 358 | 7.21e-64 | 207 |
| Msa0177540 | MtrunA17_Chr2g0314271 | 34.195 | 348 | 216 | 5 | 13 | 356 | 1 | 339 | 3.15e-63 | 206 |
| Msa0177540 | MtrunA17_Chr3g0130061 | 35.121 | 373 | 217 | 10 | 9 | 372 | 2 | 358 | 7.45e-60 | 197 |
| Msa0177540 | MtrunA17_Chr4g0022021 | 35.474 | 327 | 185 | 12 | 41 | 357 | 44 | 354 | 4.49e-51 | 174 |
| Msa0177540 | MtrunA17_Chr4g0021981 | 35.294 | 323 | 191 | 8 | 41 | 357 | 44 | 354 | 8.19e-51 | 174 |
| Msa0177540 | MtrunA17_Chr3g0121301 | 31.761 | 318 | 200 | 7 | 39 | 352 | 38 | 342 | 8.11e-48 | 166 |
| Msa0177540 | MtrunA17_Chr5g0432251 | 28.614 | 332 | 219 | 7 | 34 | 358 | 26 | 346 | 1.93e-47 | 164 |
| Msa0177540 | MtrunA17_Chr5g0432301 | 30.723 | 332 | 212 | 8 | 34 | 358 | 27 | 347 | 2.91e-46 | 162 |
| Msa0177540 | MtrunA17_Chr6g0482291 | 42.938 | 177 | 91 | 3 | 197 | 372 | 9 | 176 | 6.90e-46 | 155 |
| Msa0177540 | MtrunA17_Chr7g0219141 | 30.530 | 321 | 211 | 5 | 41 | 358 | 33 | 344 | 1.13e-44 | 157 |
| Msa0177540 | MtrunA17_Chr7g0219161 | 29.595 | 321 | 214 | 5 | 41 | 358 | 33 | 344 | 1.85e-44 | 157 |
| Msa0177540 | MtrunA17_Chr5g0432241 | 29.819 | 332 | 215 | 8 | 34 | 358 | 27 | 347 | 1.25e-43 | 154 |
| Msa0177540 | MtrunA17_Chr5g0432211 | 29.855 | 345 | 209 | 10 | 34 | 371 | 26 | 344 | 4.72e-42 | 150 |
| Msa0177540 | MtrunA17_Chr1g0188391 | 29.938 | 324 | 211 | 7 | 41 | 357 | 33 | 347 | 7.95e-42 | 150 |
| Msa0177540 | MtrunA17_Chr1g0188371 | 29.022 | 317 | 206 | 8 | 38 | 346 | 30 | 335 | 7.87e-41 | 147 |
| Msa0177540 | MtrunA17_Chr4g0046531 | 29.630 | 324 | 213 | 5 | 38 | 357 | 30 | 342 | 2.85e-40 | 151 |
| Msa0177540 | MtrunA17_Chr4g0046531 | 29.412 | 340 | 220 | 8 | 38 | 371 | 392 | 717 | 4.41e-38 | 145 |
| Msa0177540 | MtrunA17_Chr7g0223231 | 29.878 | 328 | 202 | 8 | 38 | 357 | 29 | 336 | 4.49e-40 | 145 |
| Msa0177540 | MtrunA17_Chr4g0014561 | 30.337 | 356 | 230 | 8 | 13 | 357 | 1 | 349 | 5.50e-40 | 145 |
| Msa0177540 | MtrunA17_Chr4g0014681 | 30.337 | 356 | 230 | 8 | 13 | 357 | 1 | 349 | 8.87e-40 | 144 |
| Msa0177540 | MtrunA17_Chr7g0223241 | 29.518 | 332 | 206 | 8 | 34 | 357 | 25 | 336 | 1.22e-39 | 144 |
| Msa0177540 | MtrunA17_Chr4g0046361 | 31.471 | 340 | 216 | 9 | 34 | 365 | 26 | 356 | 1.89e-38 | 141 |
| Msa0177540 | MtrunA17_Chr4g0040621 | 29.014 | 355 | 221 | 12 | 19 | 358 | 18 | 356 | 4.98e-38 | 140 |
| Msa0177540 | MtrunA17_Chr4g0014641 | 30.675 | 326 | 212 | 7 | 40 | 358 | 32 | 350 | 1.62e-37 | 138 |
| Msa0177540 | MtrunA17_Chr8g0367401 | 52.727 | 110 | 52 | 0 | 166 | 275 | 2 | 111 | 8.76e-37 | 130 |
| Msa0177540 | MtrunA17_Chr5g0432261 | 28.358 | 335 | 188 | 9 | 34 | 358 | 22 | 314 | 2.41e-35 | 132 |
| Msa0177540 | MtrunA17_Chr4g0046341 | 31.686 | 344 | 213 | 9 | 34 | 365 | 26 | 359 | 1.27e-32 | 125 |
| Msa0177540 | MtrunA17_Chr4g0014661 | 30.199 | 351 | 223 | 8 | 17 | 357 | 5 | 343 | 2.58e-30 | 119 |
| Msa0177540 | MtrunA17_Chr1g0170941 | 67.105 | 76 | 25 | 0 | 197 | 272 | 1 | 76 | 3.12e-29 | 108 |
| Msa0177540 | MtrunA17_Chr4g0014591 | 29.915 | 351 | 224 | 8 | 17 | 357 | 5 | 343 | 4.45e-29 | 115 |
| Msa0177540 | MtrunA17_Chr1g0170931 | 50.000 | 116 | 54 | 2 | 26 | 139 | 6 | 119 | 7.47e-28 | 106 |
| Msa0177540 | MtrunA17_Chr8g0367461 | 42.478 | 113 | 63 | 2 | 261 | 372 | 1 | 112 | 1.33e-25 | 99.8 |
| Msa0177540 | MtrunA17_Chr8g0367421 | 41.818 | 110 | 47 | 1 | 166 | 275 | 2 | 94 | 5.93e-24 | 95.5 |
| Msa0177540 | MtrunA17_Chr4g0014601 | 29.851 | 268 | 168 | 8 | 17 | 277 | 5 | 259 | 6.10e-23 | 97.1 |
| Msa0177540 | MtrunA17_Chr7g0219171 | 35.000 | 120 | 74 | 2 | 242 | 358 | 117 | 235 | 9.81e-22 | 93.2 |
| Msa0177540 | MtrunA17_Chr6g0476581 | 55.682 | 88 | 32 | 3 | 8 | 93 | 8 | 90 | 1.52e-19 | 83.6 |
| Msa0177540 | MtrunA17_Chr1g0170951 | 47.945 | 73 | 38 | 0 | 283 | 355 | 17 | 89 | 1.87e-18 | 79.7 |
| Msa0177540 | MtrunA17_Chr8g0367391 | 35.772 | 123 | 72 | 3 | 251 | 372 | 18 | 134 | 3.89e-17 | 77.4 |
| Msa0177540 | MtrunA17_Chr8g0367471 | 51.471 | 68 | 33 | 0 | 189 | 256 | 1 | 68 | 1.16e-15 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0177540 | AT5G54160.1 | 49.128 | 344 | 168 | 4 | 20 | 362 | 15 | 352 | 2.50e-114 | 337 |
| Msa0177540 | AT1G51990.2 | 40.220 | 363 | 208 | 6 | 12 | 371 | 5 | 361 | 1.76e-91 | 279 |
| Msa0177540 | AT1G51990.1 | 40.220 | 363 | 208 | 6 | 12 | 371 | 5 | 361 | 1.15e-90 | 277 |
| Msa0177540 | AT1G77520.1 | 40.691 | 376 | 203 | 9 | 6 | 372 | 17 | 381 | 1.31e-88 | 272 |
| Msa0177540 | AT1G33030.1 | 40.286 | 350 | 195 | 8 | 28 | 372 | 10 | 350 | 4.17e-80 | 249 |
| Msa0177540 | AT1G63140.2 | 40.166 | 361 | 202 | 8 | 21 | 372 | 26 | 381 | 6.26e-80 | 250 |
| Msa0177540 | AT1G63140.4 | 40.166 | 361 | 202 | 8 | 21 | 372 | 46 | 401 | 8.99e-80 | 250 |
| Msa0177540 | AT1G21130.1 | 40.510 | 353 | 198 | 9 | 26 | 372 | 27 | 373 | 6.97e-78 | 244 |
| Msa0177540 | AT1G77530.1 | 40.909 | 374 | 205 | 8 | 6 | 372 | 17 | 381 | 7.33e-77 | 242 |
| Msa0177540 | AT1G21100.1 | 40.510 | 353 | 198 | 9 | 26 | 372 | 27 | 373 | 7.88e-76 | 239 |
| Msa0177540 | AT1G21110.1 | 40.227 | 353 | 199 | 9 | 26 | 372 | 27 | 373 | 8.32e-76 | 239 |
| Msa0177540 | AT1G21120.1 | 39.943 | 353 | 200 | 9 | 26 | 372 | 27 | 373 | 7.00e-75 | 237 |
| Msa0177540 | AT1G21120.2 | 39.660 | 353 | 201 | 9 | 26 | 372 | 75 | 421 | 1.92e-74 | 237 |
| Msa0177540 | AT5G53810.1 | 39.766 | 342 | 197 | 6 | 38 | 372 | 39 | 378 | 4.00e-73 | 232 |
| Msa0177540 | AT1G76790.1 | 37.815 | 357 | 204 | 8 | 26 | 372 | 17 | 365 | 3.68e-67 | 216 |
| Msa0177540 | AT3G53140.1 | 35.530 | 349 | 207 | 7 | 17 | 356 | 5 | 344 | 2.11e-62 | 204 |
| Msa0177540 | AT5G37170.1 | 37.423 | 326 | 161 | 9 | 56 | 372 | 43 | 334 | 2.74e-60 | 197 |
| Msa0177540 | AT1G62900.1 | 45.631 | 206 | 109 | 3 | 169 | 372 | 1 | 205 | 5.30e-56 | 182 |
| Msa0177540 | AT1G33030.3 | 40.476 | 252 | 142 | 5 | 28 | 277 | 10 | 255 | 5.38e-54 | 179 |
| Msa0177540 | AT1G33030.2 | 40.562 | 249 | 140 | 5 | 28 | 274 | 10 | 252 | 5.40e-53 | 176 |
| Msa0177540 | AT5G37170.2 | 43.939 | 198 | 107 | 4 | 178 | 372 | 38 | 234 | 5.62e-51 | 170 |
| Msa0177540 | AT1G63140.1 | 38.931 | 262 | 149 | 5 | 21 | 275 | 46 | 303 | 2.51e-50 | 171 |
| Msa0177540 | AT1G21130.2 | 43.083 | 253 | 135 | 6 | 26 | 274 | 27 | 274 | 1.09e-49 | 169 |
| Msa0177540 | AT5G37170.3 | 44.385 | 187 | 100 | 4 | 189 | 372 | 1 | 186 | 3.59e-48 | 161 |
| Msa0177540 | AT4G35150.1 | 37.615 | 218 | 116 | 7 | 162 | 365 | 105 | 316 | 4.26e-43 | 152 |
| Msa0177540 | AT4G35160.1 | 31.250 | 368 | 218 | 12 | 9 | 357 | 16 | 367 | 2.68e-42 | 152 |
| Msa0177540 | AT1G63140.3 | 37.712 | 236 | 136 | 5 | 21 | 249 | 46 | 277 | 5.54e-39 | 140 |
| Msa0177540 | AT1G77530.2 | 38.554 | 249 | 140 | 5 | 6 | 249 | 17 | 257 | 7.90e-39 | 140 |
Find 81 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCTTTATTAATGGGTATT+TGG | 0.121685 | 1_4:-64610989 | None:intergenic |
| CCATTGACTTGTTAAATATT+TGG | 0.158407 | 1_4:-64610849 | None:intergenic |
| TCACTTGTGTTTGGTTCTTC+TGG | 0.194077 | 1_4:-64611494 | None:intergenic |
| ACGGCAAGCAATTTGAAATT+TGG | 0.215832 | 1_4:-64611624 | None:intergenic |
| TCTTTCAAGGATGAACTTTA+AGG | 0.216506 | 1_4:+64610738 | Msa0177540:intron |
| AAGTTAATTCCCTTTATTAA+TGG | 0.220033 | 1_4:-64610997 | None:intergenic |
| TGATGAAAGTAGAGGTTATT+TGG | 0.221768 | 1_4:+64610275 | Msa0177540:CDS |
| GAAAATGCACCACCACTTTC+AGG | 0.245970 | 1_4:+64611039 | Msa0177540:CDS |
| ATCCAAATACCCATTAATAA+AGG | 0.266045 | 1_4:+64610987 | Msa0177540:CDS |
| AGTTAATTCCCTTTATTAAT+GGG | 0.307073 | 1_4:-64610996 | None:intergenic |
| TGCCGTGCTTTCAACAGTTT+GGG | 0.308799 | 1_4:+64611641 | Msa0177540:CDS |
| TTGCCGTGCTTTCAACAGTT+TGG | 0.318040 | 1_4:+64611640 | Msa0177540:CDS |
| TTAGATTCTTCACTTGTGTT+TGG | 0.326373 | 1_4:-64611503 | None:intergenic |
| ATCCTGCATTGTTACAAGTT+TGG | 0.339882 | 1_4:+64610322 | Msa0177540:CDS |
| GATTTGTTCAAGAACGTTCA+TGG | 0.341231 | 1_4:+64610784 | Msa0177540:CDS |
| GTTCTGAGGTAGCACTAATT+TGG | 0.352301 | 1_4:-64609933 | None:intergenic |
| AACACTCGGACTTGCCTAAT+AGG | 0.352781 | 1_4:+64610130 | Msa0177540:CDS |
| AACATTCGGTCAAGCCTATT+AGG | 0.371607 | 1_4:-64610144 | None:intergenic |
| CACAAAGCTTTAACACCAAA+TGG | 0.375069 | 1_4:+64611443 | Msa0177540:CDS |
| AATGACAAAATATGAATTCA+TGG | 0.386118 | 1_4:+64610807 | Msa0177540:CDS |
| GGTGGTGCCGAGAGAGTTTA+CGG | 0.386591 | 1_4:+64610222 | Msa0177540:CDS |
| GTTATCCTCCTTGGTAATGT+AGG | 0.401834 | 1_4:-64609911 | None:intergenic |
| ACTAATTTGGTTATCCTCCT+TGG | 0.402910 | 1_4:-64609920 | None:intergenic |
| TCCAAATACCCATTAATAAA+GGG | 0.404369 | 1_4:+64610988 | Msa0177540:CDS |
| TGTAGGCTGTGTGCCATAAT+TGG | 0.410164 | 1_4:+64611384 | Msa0177540:intron |
| TGAAATATACACTGGATTTG+AGG | 0.429712 | 1_4:+64610906 | Msa0177540:CDS |
| CCAAATATTTAACAAGTCAA+TGG | 0.438744 | 1_4:+64610849 | Msa0177540:CDS |
| TATACTTACCTTCAGTATCA+TGG | 0.439779 | 1_4:-64611236 | None:intergenic |
| AAATAACCTCTACTTTCATC+AGG | 0.441916 | 1_4:-64610273 | None:intergenic |
| GAGAAATTGAGCAAACTCTC+TGG | 0.445194 | 1_4:+64611596 | Msa0177540:CDS |
| GAAATATACACTGGATTTGA+GGG | 0.446533 | 1_4:+64610907 | Msa0177540:CDS |
| GTTGATGTTGGAGGTGGAAG+TGG | 0.451719 | 1_4:+64610943 | Msa0177540:CDS |
| ATCCTCGATGGTACGAGTAC+TGG | 0.463390 | 1_4:-64610199 | None:intergenic |
| ATAGCAGCATTTAACACTGC+TGG | 0.468445 | 1_4:-64610012 | None:intergenic |
| CTCATGTTTATCACAGTTGG+TGG | 0.480360 | 1_4:+64611548 | Msa0177540:CDS |
| TATGTTTGCAAGTGTTCCAC+AGG | 0.500462 | 1_4:+64611207 | Msa0177540:CDS |
| ATATCAACATTAGTTGATGT+TGG | 0.501358 | 1_4:+64610931 | Msa0177540:CDS |
| ACATTAGTTGATGTTGGAGG+TGG | 0.504612 | 1_4:+64610937 | Msa0177540:CDS |
| GAGAGTTTACGGACTCTCAA+TGG | 0.504711 | 1_4:+64610233 | Msa0177540:CDS |
| TAAGGGATTGAGCATGTTGG+AGG | 0.505746 | 1_4:+64611181 | Msa0177540:intron |
| AATCTCATGTTTATCACAGT+TGG | 0.506086 | 1_4:+64611545 | Msa0177540:CDS |
| TGCTGGATAAACAAGATTAG+TGG | 0.509486 | 1_4:-64609995 | None:intergenic |
| TTTATTTGAGATCATAGCTA+AGG | 0.511778 | 1_4:+64610044 | Msa0177540:CDS |
| TAGCAAGCAAACGCAACATT+CGG | 0.513879 | 1_4:-64610158 | None:intergenic |
| TTTCAACAGTTTGGGAGTGA+TGG | 0.524643 | 1_4:+64611649 | Msa0177540:CDS |
| TGTTTATCACAGTTGGTGGA+AGG | 0.529690 | 1_4:+64611552 | Msa0177540:CDS |
| TCCGAGTGTTGCGTTGATGC+TGG | 0.531087 | 1_4:-64610117 | None:intergenic |
| TTTACGGACTCTCAATGGTC+GGG | 0.536710 | 1_4:+64610238 | Msa0177540:CDS |
| AAAATATGAATTCATGGGAA+AGG | 0.542398 | 1_4:+64610813 | Msa0177540:CDS |
| ATGACAAAATATGAATTCAT+GGG | 0.543683 | 1_4:+64610808 | Msa0177540:CDS |
| GTTTATCACAGTTGGTGGAA+GGG | 0.544261 | 1_4:+64611553 | Msa0177540:CDS |
| TACCAAACTTGTAACAATGC+AGG | 0.552486 | 1_4:-64610324 | None:intergenic |
| GCCAGCATCAACGCAACACT+CGG | 0.555632 | 1_4:+64610116 | Msa0177540:CDS |
| TGTTAAGGGATTGAGCATGT+TGG | 0.556394 | 1_4:+64611178 | Msa0177540:intron |
| GAACTTTAAGGAAGCAGTAG+TGG | 0.556591 | 1_4:+64610750 | Msa0177540:CDS |
| AATTTAGAAGCGATTTCTGA+TGG | 0.561004 | 1_4:-64610093 | None:intergenic |
| TATCATGTTATACCTGAAAG+TGG | 0.563244 | 1_4:-64611051 | None:intergenic |
| ATAGCTAAGGCAACACCACC+TGG | 0.567142 | 1_4:+64610057 | Msa0177540:CDS |
| TCAACATTAGTTGATGTTGG+AGG | 0.568137 | 1_4:+64610934 | Msa0177540:CDS |
| CTCCCAAACTGTTGAAAGCA+CGG | 0.568203 | 1_4:-64611643 | None:intergenic |
| TGAGAGTCCGTAAACTCTCT+CGG | 0.571590 | 1_4:-64610229 | None:intergenic |
| CTCGGCACCACCATCCTCGA+TGG | 0.574871 | 1_4:-64610211 | None:intergenic |
| AGAATGCTTGAAATATACAC+TGG | 0.575900 | 1_4:+64610898 | Msa0177540:CDS |
| GTTTACGGACTCTCAATGGT+CGG | 0.585206 | 1_4:+64610237 | Msa0177540:CDS |
| CTCTACTTTCATCAGGGACA+AGG | 0.594593 | 1_4:-64610266 | None:intergenic |
| ACTGTCTTCAGTTTGTTCTG+AGG | 0.597743 | 1_4:-64609947 | None:intergenic |
| CAGTGCATGTCTTTCAGCAA+TGG | 0.602261 | 1_4:+64609966 | Msa0177540:CDS |
| AGTACTCGTACCATCGAGGA+TGG | 0.616377 | 1_4:+64610201 | Msa0177540:CDS |
| CTTGTCCCTGATGAAAGTAG+AGG | 0.618925 | 1_4:+64610267 | Msa0177540:CDS |
| AAATGGAAAAGTGATTATTG+TGG | 0.620942 | 1_4:+64611460 | Msa0177540:CDS |
| GGGAAATTCCTACATTACCA+AGG | 0.642464 | 1_4:+64609903 | Msa0177540:CDS |
| AATAACCTCTACTTTCATCA+GGG | 0.648899 | 1_4:-64610272 | None:intergenic |
| GGGTGATGCCATGATACTGA+AGG | 0.650842 | 1_4:+64611228 | Msa0177540:CDS |
| ACTCGTACCATCGAGGATGG+TGG | 0.675542 | 1_4:+64610204 | Msa0177540:CDS |
| GATGGTGACATGAAAGCACC+AGG | 0.677429 | 1_4:-64610075 | None:intergenic |
| ATGTTTGCAAGTGTTCCACA+GGG | 0.705139 | 1_4:+64611208 | Msa0177540:CDS |
| AGTATCATGGCATCACCCTG+TGG | 0.705622 | 1_4:-64611223 | None:intergenic |
| TTCCAGTACTCGTACCATCG+AGG | 0.725495 | 1_4:+64610197 | Msa0177540:CDS |
| AAATTCCTACATTACCAAGG+AGG | 0.730361 | 1_4:+64609906 | Msa0177540:CDS |
| CATGTTATACCTGAAAGTGG+TGG | 0.738842 | 1_4:-64611048 | None:intergenic |
| GGTGACATGAAAGCACCAGG+TGG | 0.810388 | 1_4:-64610072 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATACATATATAAAATGTA+CGG | + | chr1_4:64610360-64610379 | Msa0177540:intron | 15.0% |
| !! | TTTATATATGTATGAGAAAT+AGG | - | chr1_4:64610355-64610374 | None:intergenic | 15.0% |
| !! | TCATACATATATAAAATGTA+CGG | + | chr1_4:64610360-64610379 | Msa0177540:intron | 15.0% |
| !! | TCATACATATATAAAATGTA+CGG | + | chr1_4:64610360-64610379 | Msa0177540:intron | 15.0% |
| !! | TTTATATATGTATGAGAAAT+AGG | - | chr1_4:64610355-64610374 | None:intergenic | 15.0% |
| !! | TCATACATATATAAAATGTA+CGG | + | chr1_4:64610360-64610379 | Msa0177540:intron | 15.0% |
| !! | ATATACACCTATTAAACATA+TGG | + | chr1_4:64610408-64610427 | Msa0177540:intron | 20.0% |
| !! | AATGACAAAATATGAATTCA+TGG | + | chr1_4:64610807-64610826 | Msa0177540:CDS | 20.0% |
| !! | ATGACAAAATATGAATTCAT+GGG | + | chr1_4:64610808-64610827 | Msa0177540:CDS | 20.0% |
| !! | AGTTAATTCCCTTTATTAAT+GGG | - | chr1_4:64610999-64611018 | None:intergenic | 20.0% |
| !! | AAGTTAATTCCCTTTATTAA+TGG | - | chr1_4:64611000-64611019 | None:intergenic | 20.0% |
| !! | ATATACACCTATTAAACATA+TGG | + | chr1_4:64610408-64610427 | Msa0177540:intron | 20.0% |
| !! | AATGACAAAATATGAATTCA+TGG | + | chr1_4:64610807-64610826 | Msa0177540:CDS | 20.0% |
| !! | ATGACAAAATATGAATTCAT+GGG | + | chr1_4:64610808-64610827 | Msa0177540:CDS | 20.0% |
| !! | AGTTAATTCCCTTTATTAAT+GGG | - | chr1_4:64610999-64611018 | None:intergenic | 20.0% |
| !! | AAGTTAATTCCCTTTATTAA+TGG | - | chr1_4:64611000-64611019 | None:intergenic | 20.0% |
| !! | TTTATTTGAGATCATAGCTA+AGG | + | chr1_4:64610044-64610063 | Msa0177540:CDS | 25.0% |
| ! | TTAAACTATTTATCCGAACA+CGG | - | chr1_4:64610539-64610558 | None:intergenic | 25.0% |
| ! | ATATTCACCTATGAAACATA+TGG | + | chr1_4:64610563-64610582 | Msa0177540:intron | 25.0% |
| !!! | TCTTACTTTTGTTCCAATTA+TGG | + | chr1_4:64610701-64610720 | Msa0177540:intron | 25.0% |
| ! | AAAATATGAATTCATGGGAA+AGG | + | chr1_4:64610813-64610832 | Msa0177540:CDS | 25.0% |
| !!! | CCATTGACTTGTTAAATATT+TGG | - | chr1_4:64610852-64610871 | None:intergenic | 25.0% |
| ! | CCAAATATTTAACAAGTCAA+TGG | + | chr1_4:64610849-64610868 | Msa0177540:CDS | 25.0% |
| !! | ATATCAACATTAGTTGATGT+TGG | + | chr1_4:64610931-64610950 | Msa0177540:CDS | 25.0% |
| ! | ATCCAAATACCCATTAATAA+AGG | + | chr1_4:64610987-64611006 | Msa0177540:CDS | 25.0% |
| ! | TCCAAATACCCATTAATAAA+GGG | + | chr1_4:64610988-64611007 | Msa0177540:CDS | 25.0% |
| !! | GACTTTGTTTACATAATTGT+AGG | + | chr1_4:64611367-64611386 | Msa0177540:intron | 25.0% |
| !! | ATTTTTCATCTGACCAATTA+TGG | - | chr1_4:64611400-64611419 | None:intergenic | 25.0% |
| !!! | ACAATAATCACTTTTCCATT+TGG | - | chr1_4:64611461-64611480 | None:intergenic | 25.0% |
| ! | AAATGGAAAAGTGATTATTG+TGG | + | chr1_4:64611460-64611479 | Msa0177540:CDS | 25.0% |
| !! | TTTATTTGAGATCATAGCTA+AGG | + | chr1_4:64610044-64610063 | Msa0177540:CDS | 25.0% |
| ! | TTAAACTATTTATCCGAACA+CGG | - | chr1_4:64610539-64610558 | None:intergenic | 25.0% |
| ! | ATATTCACCTATGAAACATA+TGG | + | chr1_4:64610563-64610582 | Msa0177540:intron | 25.0% |
| !!! | TCTTACTTTTGTTCCAATTA+TGG | + | chr1_4:64610701-64610720 | Msa0177540:intron | 25.0% |
| ! | AAAATATGAATTCATGGGAA+AGG | + | chr1_4:64610813-64610832 | Msa0177540:CDS | 25.0% |
| !!! | CCATTGACTTGTTAAATATT+TGG | - | chr1_4:64610852-64610871 | None:intergenic | 25.0% |
| ! | CCAAATATTTAACAAGTCAA+TGG | + | chr1_4:64610849-64610868 | Msa0177540:CDS | 25.0% |
| !! | ATATCAACATTAGTTGATGT+TGG | + | chr1_4:64610931-64610950 | Msa0177540:CDS | 25.0% |
| ! | ATCCAAATACCCATTAATAA+AGG | + | chr1_4:64610987-64611006 | Msa0177540:CDS | 25.0% |
| ! | TCCAAATACCCATTAATAAA+GGG | + | chr1_4:64610988-64611007 | Msa0177540:CDS | 25.0% |
| !! | GACTTTGTTTACATAATTGT+AGG | + | chr1_4:64611367-64611386 | Msa0177540:intron | 25.0% |
| !! | ATTTTTCATCTGACCAATTA+TGG | - | chr1_4:64611400-64611419 | None:intergenic | 25.0% |
| !!! | ACAATAATCACTTTTCCATT+TGG | - | chr1_4:64611461-64611480 | None:intergenic | 25.0% |
| ! | AAATGGAAAAGTGATTATTG+TGG | + | chr1_4:64611460-64611479 | Msa0177540:CDS | 25.0% |
| AATTTAGAAGCGATTTCTGA+TGG | - | chr1_4:64610096-64610115 | None:intergenic | 30.0% | |
| AATAACCTCTACTTTCATCA+GGG | - | chr1_4:64610275-64610294 | None:intergenic | 30.0% | |
| AAATAACCTCTACTTTCATC+AGG | - | chr1_4:64610276-64610295 | None:intergenic | 30.0% | |
| TGATGAAAGTAGAGGTTATT+TGG | + | chr1_4:64610275-64610294 | Msa0177540:CDS | 30.0% | |
| TACACCTATTAAACATATGG+AGG | + | chr1_4:64610411-64610430 | Msa0177540:intron | 30.0% | |
| GTATCCTCCATATGTTTAAT+AGG | - | chr1_4:64610418-64610437 | None:intergenic | 30.0% | |
| TTAAACATATGGAGGATACT+TGG | + | chr1_4:64610419-64610438 | Msa0177540:intron | 30.0% | |
| TTATCCTCCATATGTTTCAT+AGG | - | chr1_4:64610573-64610592 | None:intergenic | 30.0% | |
| ACTAAAGCTTAGACCATAAT+TGG | - | chr1_4:64610717-64610736 | None:intergenic | 30.0% | |
| ! | CTAAGCTTTAGTTTCTTTCA+AGG | + | chr1_4:64610725-64610744 | Msa0177540:intron | 30.0% |
| TCTTTCAAGGATGAACTTTA+AGG | + | chr1_4:64610738-64610757 | Msa0177540:intron | 30.0% | |
| AGAATGCTTGAAATATACAC+TGG | + | chr1_4:64610898-64610917 | Msa0177540:CDS | 30.0% | |
| TGAAATATACACTGGATTTG+AGG | + | chr1_4:64610906-64610925 | Msa0177540:CDS | 30.0% | |
| GAAATATACACTGGATTTGA+GGG | + | chr1_4:64610907-64610926 | Msa0177540:CDS | 30.0% | |
| ! | TCCCTTTATTAATGGGTATT+TGG | - | chr1_4:64610992-64611011 | None:intergenic | 30.0% |
| ! | TGGTGCATTTTCAATAACTT+GGG | - | chr1_4:64611031-64611050 | None:intergenic | 30.0% |
| TATCATGTTATACCTGAAAG+TGG | - | chr1_4:64611054-64611073 | None:intergenic | 30.0% | |
| TATACTACCAACTCTTGTTA+AGG | + | chr1_4:64611163-64611182 | Msa0177540:intron | 30.0% | |
| ATACTACCAACTCTTGTTAA+GGG | + | chr1_4:64611164-64611183 | Msa0177540:intron | 30.0% | |
| TATACTTACCTTCAGTATCA+TGG | - | chr1_4:64611239-64611258 | None:intergenic | 30.0% | |
| TTAGATTCTTCACTTGTGTT+TGG | - | chr1_4:64611506-64611525 | None:intergenic | 30.0% | |
| AATCTCATGTTTATCACAGT+TGG | + | chr1_4:64611545-64611564 | Msa0177540:CDS | 30.0% | |
| AATTTAGAAGCGATTTCTGA+TGG | - | chr1_4:64610096-64610115 | None:intergenic | 30.0% | |
| AATAACCTCTACTTTCATCA+GGG | - | chr1_4:64610275-64610294 | None:intergenic | 30.0% | |
| AAATAACCTCTACTTTCATC+AGG | - | chr1_4:64610276-64610295 | None:intergenic | 30.0% | |
| TGATGAAAGTAGAGGTTATT+TGG | + | chr1_4:64610275-64610294 | Msa0177540:CDS | 30.0% | |
| TACACCTATTAAACATATGG+AGG | + | chr1_4:64610411-64610430 | Msa0177540:intron | 30.0% | |
| GTATCCTCCATATGTTTAAT+AGG | - | chr1_4:64610418-64610437 | None:intergenic | 30.0% | |
| TTAAACATATGGAGGATACT+TGG | + | chr1_4:64610419-64610438 | Msa0177540:intron | 30.0% | |
| TTATCCTCCATATGTTTCAT+AGG | - | chr1_4:64610573-64610592 | None:intergenic | 30.0% | |
| ACTAAAGCTTAGACCATAAT+TGG | - | chr1_4:64610717-64610736 | None:intergenic | 30.0% | |
| ! | CTAAGCTTTAGTTTCTTTCA+AGG | + | chr1_4:64610725-64610744 | Msa0177540:intron | 30.0% |
| TCTTTCAAGGATGAACTTTA+AGG | + | chr1_4:64610738-64610757 | Msa0177540:intron | 30.0% | |
| AGAATGCTTGAAATATACAC+TGG | + | chr1_4:64610898-64610917 | Msa0177540:CDS | 30.0% | |
| TGAAATATACACTGGATTTG+AGG | + | chr1_4:64610906-64610925 | Msa0177540:CDS | 30.0% | |
| GAAATATACACTGGATTTGA+GGG | + | chr1_4:64610907-64610926 | Msa0177540:CDS | 30.0% | |
| ! | TCCCTTTATTAATGGGTATT+TGG | - | chr1_4:64610992-64611011 | None:intergenic | 30.0% |
| ! | TGGTGCATTTTCAATAACTT+GGG | - | chr1_4:64611031-64611050 | None:intergenic | 30.0% |
| TATCATGTTATACCTGAAAG+TGG | - | chr1_4:64611054-64611073 | None:intergenic | 30.0% | |
| TATACTACCAACTCTTGTTA+AGG | + | chr1_4:64611163-64611182 | Msa0177540:intron | 30.0% | |
| ATACTACCAACTCTTGTTAA+GGG | + | chr1_4:64611164-64611183 | Msa0177540:intron | 30.0% | |
| TATACTTACCTTCAGTATCA+TGG | - | chr1_4:64611239-64611258 | None:intergenic | 30.0% | |
| TTAGATTCTTCACTTGTGTT+TGG | - | chr1_4:64611506-64611525 | None:intergenic | 30.0% | |
| AATCTCATGTTTATCACAGT+TGG | + | chr1_4:64611545-64611564 | Msa0177540:CDS | 30.0% | |
| AAATTCCTACATTACCAAGG+AGG | + | chr1_4:64609906-64609925 | Msa0177540:CDS | 35.0% | |
| ACTAATTTGGTTATCCTCCT+TGG | - | chr1_4:64609923-64609942 | None:intergenic | 35.0% | |
| TGCTGGATAAACAAGATTAG+TGG | - | chr1_4:64609998-64610017 | None:intergenic | 35.0% | |
| ATCCTGCATTGTTACAAGTT+TGG | + | chr1_4:64610322-64610341 | Msa0177540:CDS | 35.0% | |
| TACCAAACTTGTAACAATGC+AGG | - | chr1_4:64610327-64610346 | None:intergenic | 35.0% | |
| AAATGTACGGATAGACAAAG+TGG | + | chr1_4:64610373-64610392 | Msa0177540:intron | 35.0% | |
| TGCAGGATAACATAGAAATG+TGG | - | chr1_4:64610310-64610329 | None:intergenic | 35.0% | |
| !! | CCAAACTTGTTAACAAATGC+AGG | - | chr1_4:64610471-64610490 | None:intergenic | 35.0% |
| ! | CCTGCATTTGTTAACAAGTT+TGG | + | chr1_4:64610468-64610487 | Msa0177540:intron | 35.0% |
| TTCACCTATGAAACATATGG+AGG | + | chr1_4:64610566-64610585 | Msa0177540:intron | 35.0% | |
| ! | GATTTGTTCAAGAACGTTCA+TGG | + | chr1_4:64610784-64610803 | Msa0177540:CDS | 35.0% |
| ! | TCAACATTAGTTGATGTTGG+AGG | + | chr1_4:64610934-64610953 | Msa0177540:CDS | 35.0% |
| ! | GGTGCATTTTCAATAACTTG+GGG | - | chr1_4:64611030-64611049 | None:intergenic | 35.0% |
| ! | GTGGTGCATTTTCAATAACT+TGG | - | chr1_4:64611032-64611051 | None:intergenic | 35.0% |
| ! | CACAAAGCTTTAACACCAAA+TGG | + | chr1_4:64611443-64611462 | Msa0177540:CDS | 35.0% |
| ! | ACGGCAAGCAATTTGAAATT+TGG | - | chr1_4:64611627-64611646 | None:intergenic | 35.0% |
| AAATTCCTACATTACCAAGG+AGG | + | chr1_4:64609906-64609925 | Msa0177540:CDS | 35.0% | |
| ACTAATTTGGTTATCCTCCT+TGG | - | chr1_4:64609923-64609942 | None:intergenic | 35.0% | |
| TGCTGGATAAACAAGATTAG+TGG | - | chr1_4:64609998-64610017 | None:intergenic | 35.0% | |
| ATCCTGCATTGTTACAAGTT+TGG | + | chr1_4:64610322-64610341 | Msa0177540:CDS | 35.0% | |
| TACCAAACTTGTAACAATGC+AGG | - | chr1_4:64610327-64610346 | None:intergenic | 35.0% | |
| AAATGTACGGATAGACAAAG+TGG | + | chr1_4:64610373-64610392 | Msa0177540:intron | 35.0% | |
| TGCAGGATAACATAGAAATG+TGG | - | chr1_4:64610310-64610329 | None:intergenic | 35.0% | |
| !! | CCAAACTTGTTAACAAATGC+AGG | - | chr1_4:64610471-64610490 | None:intergenic | 35.0% |
| ! | CCTGCATTTGTTAACAAGTT+TGG | + | chr1_4:64610468-64610487 | Msa0177540:intron | 35.0% |
| TTCACCTATGAAACATATGG+AGG | + | chr1_4:64610566-64610585 | Msa0177540:intron | 35.0% | |
| ! | GATTTGTTCAAGAACGTTCA+TGG | + | chr1_4:64610784-64610803 | Msa0177540:CDS | 35.0% |
| ! | TCAACATTAGTTGATGTTGG+AGG | + | chr1_4:64610934-64610953 | Msa0177540:CDS | 35.0% |
| ! | GGTGCATTTTCAATAACTTG+GGG | - | chr1_4:64611030-64611049 | None:intergenic | 35.0% |
| ! | GTGGTGCATTTTCAATAACT+TGG | - | chr1_4:64611032-64611051 | None:intergenic | 35.0% |
| ! | CACAAAGCTTTAACACCAAA+TGG | + | chr1_4:64611443-64611462 | Msa0177540:CDS | 35.0% |
| ! | ACGGCAAGCAATTTGAAATT+TGG | - | chr1_4:64611627-64611646 | None:intergenic | 35.0% |
| GGGAAATTCCTACATTACCA+AGG | + | chr1_4:64609903-64609922 | Msa0177540:CDS | 40.0% | |
| !! | GTTATCCTCCTTGGTAATGT+AGG | - | chr1_4:64609914-64609933 | None:intergenic | 40.0% |
| !! | GTTCTGAGGTAGCACTAATT+TGG | - | chr1_4:64609936-64609955 | None:intergenic | 40.0% |
| ! | ACTGTCTTCAGTTTGTTCTG+AGG | - | chr1_4:64609950-64609969 | None:intergenic | 40.0% |
| ATAGCAGCATTTAACACTGC+TGG | - | chr1_4:64610015-64610034 | None:intergenic | 40.0% | |
| AACATTCGGTCAAGCCTATT+AGG | - | chr1_4:64610147-64610166 | None:intergenic | 40.0% | |
| TAGCAAGCAAACGCAACATT+CGG | - | chr1_4:64610161-64610180 | None:intergenic | 40.0% | |
| ! | GAACTTTAAGGAAGCAGTAG+TGG | + | chr1_4:64610750-64610769 | Msa0177540:CDS | 40.0% |
| ! | ACATTAGTTGATGTTGGAGG+TGG | + | chr1_4:64610937-64610956 | Msa0177540:CDS | 40.0% |
| CATGTTATACCTGAAAGTGG+TGG | - | chr1_4:64611051-64611070 | None:intergenic | 40.0% | |
| CTCAATCCCTTAACAAGAGT+TGG | - | chr1_4:64611173-64611192 | None:intergenic | 40.0% | |
| TGTTAAGGGATTGAGCATGT+TGG | + | chr1_4:64611178-64611197 | Msa0177540:intron | 40.0% | |
| TATGTTTGCAAGTGTTCCAC+AGG | + | chr1_4:64611207-64611226 | Msa0177540:CDS | 40.0% | |
| ATGTTTGCAAGTGTTCCACA+GGG | + | chr1_4:64611208-64611227 | Msa0177540:CDS | 40.0% | |
| !! | TCACTTGTGTTTGGTTCTTC+TGG | - | chr1_4:64611497-64611516 | None:intergenic | 40.0% |
| CTCATGTTTATCACAGTTGG+TGG | + | chr1_4:64611548-64611567 | Msa0177540:CDS | 40.0% | |
| !! | TGTTTATCACAGTTGGTGGA+AGG | + | chr1_4:64611552-64611571 | Msa0177540:CDS | 40.0% |
| !! | GTTTATCACAGTTGGTGGAA+GGG | + | chr1_4:64611553-64611572 | Msa0177540:CDS | 40.0% |
| GAGAAATTGAGCAAACTCTC+TGG | + | chr1_4:64611596-64611615 | Msa0177540:CDS | 40.0% | |
| TTTCAACAGTTTGGGAGTGA+TGG | + | chr1_4:64611649-64611668 | Msa0177540:CDS | 40.0% | |
| GGGAAATTCCTACATTACCA+AGG | + | chr1_4:64609903-64609922 | Msa0177540:CDS | 40.0% | |
| !! | GTTATCCTCCTTGGTAATGT+AGG | - | chr1_4:64609914-64609933 | None:intergenic | 40.0% |
| !! | GTTCTGAGGTAGCACTAATT+TGG | - | chr1_4:64609936-64609955 | None:intergenic | 40.0% |
| ! | ACTGTCTTCAGTTTGTTCTG+AGG | - | chr1_4:64609950-64609969 | None:intergenic | 40.0% |
| ATAGCAGCATTTAACACTGC+TGG | - | chr1_4:64610015-64610034 | None:intergenic | 40.0% | |
| AACATTCGGTCAAGCCTATT+AGG | - | chr1_4:64610147-64610166 | None:intergenic | 40.0% | |
| TAGCAAGCAAACGCAACATT+CGG | - | chr1_4:64610161-64610180 | None:intergenic | 40.0% | |
| ! | GAACTTTAAGGAAGCAGTAG+TGG | + | chr1_4:64610750-64610769 | Msa0177540:CDS | 40.0% |
| ! | ACATTAGTTGATGTTGGAGG+TGG | + | chr1_4:64610937-64610956 | Msa0177540:CDS | 40.0% |
| CATGTTATACCTGAAAGTGG+TGG | - | chr1_4:64611051-64611070 | None:intergenic | 40.0% | |
| CTCAATCCCTTAACAAGAGT+TGG | - | chr1_4:64611173-64611192 | None:intergenic | 40.0% | |
| TGTTAAGGGATTGAGCATGT+TGG | + | chr1_4:64611178-64611197 | Msa0177540:intron | 40.0% | |
| TATGTTTGCAAGTGTTCCAC+AGG | + | chr1_4:64611207-64611226 | Msa0177540:CDS | 40.0% | |
| ATGTTTGCAAGTGTTCCACA+GGG | + | chr1_4:64611208-64611227 | Msa0177540:CDS | 40.0% | |
| !! | TCACTTGTGTTTGGTTCTTC+TGG | - | chr1_4:64611497-64611516 | None:intergenic | 40.0% |
| CTCATGTTTATCACAGTTGG+TGG | + | chr1_4:64611548-64611567 | Msa0177540:CDS | 40.0% | |
| !! | TGTTTATCACAGTTGGTGGA+AGG | + | chr1_4:64611552-64611571 | Msa0177540:CDS | 40.0% |
| !! | GTTTATCACAGTTGGTGGAA+GGG | + | chr1_4:64611553-64611572 | Msa0177540:CDS | 40.0% |
| GAGAAATTGAGCAAACTCTC+TGG | + | chr1_4:64611596-64611615 | Msa0177540:CDS | 40.0% | |
| TTTCAACAGTTTGGGAGTGA+TGG | + | chr1_4:64611649-64611668 | Msa0177540:CDS | 40.0% | |
| CAGTGCATGTCTTTCAGCAA+TGG | + | chr1_4:64609966-64609985 | Msa0177540:CDS | 45.0% | |
| AACACTCGGACTTGCCTAAT+AGG | + | chr1_4:64610130-64610149 | Msa0177540:CDS | 45.0% | |
| TGAGAGTCCGTAAACTCTCT+CGG | - | chr1_4:64610232-64610251 | None:intergenic | 45.0% | |
| GAGAGTTTACGGACTCTCAA+TGG | + | chr1_4:64610233-64610252 | Msa0177540:CDS | 45.0% | |
| GTTTACGGACTCTCAATGGT+CGG | + | chr1_4:64610237-64610256 | Msa0177540:CDS | 45.0% | |
| TTTACGGACTCTCAATGGTC+GGG | + | chr1_4:64610238-64610257 | Msa0177540:CDS | 45.0% | |
| CTCTACTTTCATCAGGGACA+AGG | - | chr1_4:64610269-64610288 | None:intergenic | 45.0% | |
| CTTGTCCCTGATGAAAGTAG+AGG | + | chr1_4:64610267-64610286 | Msa0177540:CDS | 45.0% | |
| GAAAATGCACCACCACTTTC+AGG | + | chr1_4:64611039-64611058 | Msa0177540:CDS | 45.0% | |
| TAAGGGATTGAGCATGTTGG+AGG | + | chr1_4:64611181-64611200 | Msa0177540:intron | 45.0% | |
| TGTAGGCTGTGTGCCATAAT+TGG | + | chr1_4:64611384-64611403 | Msa0177540:intron | 45.0% | |
| TTGCCGTGCTTTCAACAGTT+TGG | + | chr1_4:64611640-64611659 | Msa0177540:CDS | 45.0% | |
| TGCCGTGCTTTCAACAGTTT+GGG | + | chr1_4:64611641-64611660 | Msa0177540:CDS | 45.0% | |
| CTCCCAAACTGTTGAAAGCA+CGG | - | chr1_4:64611646-64611665 | None:intergenic | 45.0% | |
| CAGTGCATGTCTTTCAGCAA+TGG | + | chr1_4:64609966-64609985 | Msa0177540:CDS | 45.0% | |
| AACACTCGGACTTGCCTAAT+AGG | + | chr1_4:64610130-64610149 | Msa0177540:CDS | 45.0% | |
| TGAGAGTCCGTAAACTCTCT+CGG | - | chr1_4:64610232-64610251 | None:intergenic | 45.0% | |
| GAGAGTTTACGGACTCTCAA+TGG | + | chr1_4:64610233-64610252 | Msa0177540:CDS | 45.0% | |
| GTTTACGGACTCTCAATGGT+CGG | + | chr1_4:64610237-64610256 | Msa0177540:CDS | 45.0% | |
| TTTACGGACTCTCAATGGTC+GGG | + | chr1_4:64610238-64610257 | Msa0177540:CDS | 45.0% | |
| CTCTACTTTCATCAGGGACA+AGG | - | chr1_4:64610269-64610288 | None:intergenic | 45.0% | |
| CTTGTCCCTGATGAAAGTAG+AGG | + | chr1_4:64610267-64610286 | Msa0177540:CDS | 45.0% | |
| GAAAATGCACCACCACTTTC+AGG | + | chr1_4:64611039-64611058 | Msa0177540:CDS | 45.0% | |
| TAAGGGATTGAGCATGTTGG+AGG | + | chr1_4:64611181-64611200 | Msa0177540:intron | 45.0% | |
| TGTAGGCTGTGTGCCATAAT+TGG | + | chr1_4:64611384-64611403 | Msa0177540:intron | 45.0% | |
| TTGCCGTGCTTTCAACAGTT+TGG | + | chr1_4:64611640-64611659 | Msa0177540:CDS | 45.0% | |
| TGCCGTGCTTTCAACAGTTT+GGG | + | chr1_4:64611641-64611660 | Msa0177540:CDS | 45.0% | |
| CTCCCAAACTGTTGAAAGCA+CGG | - | chr1_4:64611646-64611665 | None:intergenic | 45.0% | |
| ATAGCTAAGGCAACACCACC+TGG | + | chr1_4:64610057-64610076 | Msa0177540:CDS | 50.0% | |
| !! | GATGGTGACATGAAAGCACC+AGG | - | chr1_4:64610078-64610097 | None:intergenic | 50.0% |
| TTCCAGTACTCGTACCATCG+AGG | + | chr1_4:64610197-64610216 | Msa0177540:CDS | 50.0% | |
| ATCCTCGATGGTACGAGTAC+TGG | - | chr1_4:64610202-64610221 | None:intergenic | 50.0% | |
| AGTACTCGTACCATCGAGGA+TGG | + | chr1_4:64610201-64610220 | Msa0177540:CDS | 50.0% | |
| GTACGGATAGTGACCGTGTT+CGG | + | chr1_4:64610523-64610542 | Msa0177540:intron | 50.0% | |
| GTTGATGTTGGAGGTGGAAG+TGG | + | chr1_4:64610943-64610962 | Msa0177540:CDS | 50.0% | |
| AGTATCATGGCATCACCCTG+TGG | - | chr1_4:64611226-64611245 | None:intergenic | 50.0% | |
| GGGTGATGCCATGATACTGA+AGG | + | chr1_4:64611228-64611247 | Msa0177540:CDS | 50.0% | |
| ATAGCTAAGGCAACACCACC+TGG | + | chr1_4:64610057-64610076 | Msa0177540:CDS | 50.0% | |
| !! | GATGGTGACATGAAAGCACC+AGG | - | chr1_4:64610078-64610097 | None:intergenic | 50.0% |
| TTCCAGTACTCGTACCATCG+AGG | + | chr1_4:64610197-64610216 | Msa0177540:CDS | 50.0% | |
| ATCCTCGATGGTACGAGTAC+TGG | - | chr1_4:64610202-64610221 | None:intergenic | 50.0% | |
| AGTACTCGTACCATCGAGGA+TGG | + | chr1_4:64610201-64610220 | Msa0177540:CDS | 50.0% | |
| GTACGGATAGTGACCGTGTT+CGG | + | chr1_4:64610523-64610542 | Msa0177540:intron | 50.0% | |
| GTTGATGTTGGAGGTGGAAG+TGG | + | chr1_4:64610943-64610962 | Msa0177540:CDS | 50.0% | |
| AGTATCATGGCATCACCCTG+TGG | - | chr1_4:64611226-64611245 | None:intergenic | 50.0% | |
| GGGTGATGCCATGATACTGA+AGG | + | chr1_4:64611228-64611247 | Msa0177540:CDS | 50.0% | |
| !! | GGTGACATGAAAGCACCAGG+TGG | - | chr1_4:64610075-64610094 | None:intergenic | 55.0% |
| GCCAGCATCAACGCAACACT+CGG | + | chr1_4:64610116-64610135 | Msa0177540:CDS | 55.0% | |
| ! | TCCGAGTGTTGCGTTGATGC+TGG | - | chr1_4:64610120-64610139 | None:intergenic | 55.0% |
| ACTCGTACCATCGAGGATGG+TGG | + | chr1_4:64610204-64610223 | Msa0177540:CDS | 55.0% | |
| ! | GGTGGTGCCGAGAGAGTTTA+CGG | + | chr1_4:64610222-64610241 | Msa0177540:CDS | 55.0% |
| !! | GGTGACATGAAAGCACCAGG+TGG | - | chr1_4:64610075-64610094 | None:intergenic | 55.0% |
| GCCAGCATCAACGCAACACT+CGG | + | chr1_4:64610116-64610135 | Msa0177540:CDS | 55.0% | |
| ! | TCCGAGTGTTGCGTTGATGC+TGG | - | chr1_4:64610120-64610139 | None:intergenic | 55.0% |
| ACTCGTACCATCGAGGATGG+TGG | + | chr1_4:64610204-64610223 | Msa0177540:CDS | 55.0% | |
| ! | GGTGGTGCCGAGAGAGTTTA+CGG | + | chr1_4:64610222-64610241 | Msa0177540:CDS | 55.0% |
| CTCGGCACCACCATCCTCGA+TGG | - | chr1_4:64610214-64610233 | None:intergenic | 65.0% | |
| CTCGGCACCACCATCCTCGA+TGG | - | chr1_4:64610214-64610233 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 64609901 | 64611685 | 64609901 | ID=Msa0177540;Name=Msa0177540 |
| chr1_4 | mRNA | 64609901 | 64611685 | 64609901 | ID=Msa0177540-mRNA-1;Parent=Msa0177540;Name=Msa0177540-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|4|0|372 |
| chr1_4 | exon | 64609901 | 64610343 | 64609901 | ID=Msa0177540-mRNA-1:exon:20982;Parent=Msa0177540-mRNA-1 |
| chr1_4 | exon | 64610747 | 64611060 | 64610747 | ID=Msa0177540-mRNA-1:exon:20983;Parent=Msa0177540-mRNA-1 |
| chr1_4 | exon | 64611185 | 64611249 | 64611185 | ID=Msa0177540-mRNA-1:exon:20984;Parent=Msa0177540-mRNA-1 |
| chr1_4 | exon | 64611389 | 64611685 | 64611389 | ID=Msa0177540-mRNA-1:exon:20985;Parent=Msa0177540-mRNA-1 |
| chr1_4 | CDS | 64609901 | 64610343 | 64609901 | ID=Msa0177540-mRNA-1:cds;Parent=Msa0177540-mRNA-1 |
| chr1_4 | CDS | 64610747 | 64611060 | 64610747 | ID=Msa0177540-mRNA-1:cds;Parent=Msa0177540-mRNA-1 |
| chr1_4 | CDS | 64611185 | 64611249 | 64611185 | ID=Msa0177540-mRNA-1:cds;Parent=Msa0177540-mRNA-1 |
| chr1_4 | CDS | 64611389 | 64611685 | 64611389 | ID=Msa0177540-mRNA-1:cds;Parent=Msa0177540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
