AlfalfaGEDB | Msa0584360

M. sativa cultivar zhongmu-4 / Msa0584360

KEGG: -
GO: -
PFAM: PF01582.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0584360	XP_027187551.1	86.992	246	32	0	1	246	1	246	1.00e-158	450

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0584360	sp\|V9M2S5\|RPV1_VITRO	51.163	172	80	2	11	181	17	185	4.65e-53	187

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0010150	Msa0584360	0.815188	1.050704e-51	-8.615850e-47
Msa0150910	Msa0584360	0.801737	7.819070e-49	-8.615850e-47
Msa0150920	Msa0584360	0.803100	4.095330e-49	-8.615850e-47
Msa0177540	Msa0584360	0.803147	4.004576e-49	-8.615850e-47
Msa0177550	Msa0584360	0.803927	2.759558e-49	-8.615850e-47
Msa0190670	Msa0584360	0.822844	1.906167e-53	-8.615850e-47
Msa0209320	Msa0584360	0.811917	5.506480e-51	-8.615850e-47
Msa0209520	Msa0584360	0.807977	3.882968e-50	-8.615850e-47
Msa0272210	Msa0584360	0.816991	4.156456e-52	-8.615850e-47
Msa0274250	Msa0584360	0.809937	1.478010e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0584360	MtrunA17_Chr5g0415641	63.180	239	86	1	4	242	1	237	8.66e-110	316
Msa0584360	MtrunA17_Chr8g0362831	58.547	234	95	1	13	246	12	243	2.15e-94	277
Msa0584360	MtrunA17_Chr8g0363491	58.621	232	94	1	13	244	12	241	4.20e-94	276
Msa0584360	MtrunA17_Chr8g0362921	58.190	232	95	1	13	244	13	242	3.27e-93	274
Msa0584360	MtrunA17_Chr5g0415571	62.814	199	71	1	7	202	2	200	1.58e-91	268
Msa0584360	MtrunA17_Chr8g0362611	53.219	233	105	2	3	235	5	233	7.31e-86	257
Msa0584360	MtrunA17_Chr5g0415611	54.508	244	103	4	2	242	4	242	1.25e-85	256
Msa0584360	MtrunA17_Chr5g0415631	56.306	222	94	2	13	234	16	234	1.12e-83	250
Msa0584360	MtrunA17_Chr8g0362601	53.275	229	103	2	7	235	9	233	5.01e-83	251
Msa0584360	MtrunA17_Chr5g0415581	58.416	202	79	2	10	211	13	209	2.62e-78	236

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0584360	AT2G20142.1	47.337	169	84	2	13	181	5	168	7.94e-49	163
Msa0584360	AT1G63880.2	41.584	202	116	1	4	205	1	200	2.02e-44	159
Msa0584360	AT1G63880.1	41.584	202	116	1	4	205	1	200	5.04e-44	158
Msa0584360	AT5G18350.1	45.312	192	99	3	2	190	3	191	5.17e-44	158
Msa0584360	AT1G63730.1	43.750	208	102	5	4	205	1	199	2.32e-43	156
Msa0584360	AT1G64070.1	43.814	194	97	3	17	205	14	200	2.40e-43	156
Msa0584360	AT3G04220.2	40.838	191	108	3	17	205	63	250	7.43e-43	154
Msa0584360	AT3G04220.1	40.838	191	108	3	17	205	63	250	9.53e-43	154
Msa0584360	AT3G04220.3	40.838	191	108	3	17	205	63	250	1.00e-42	154
Msa0584360	AT1G65850.1	42.781	187	92	4	2	183	21	197	6.19e-42	152

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Find 54 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTATGCTAATTCAAAG+TGG	0.594469	4_2:+3624686	Msa0584360:CDS
AAATATCAAACGCACTTCTT+AGG	0.197866	4_2:+3624623	Msa0584360:CDS
AAATTGAATCATGTGTATGT+TGG	0.579734	4_2:+3626182	Msa0584360:CDS
AACTCGTGGAAAGAATTGCT+AGG	0.596444	4_2:+3626147	Msa0584360:CDS
AAGAAACCAACCAGCATCTT+GGG	0.425021	4_2:+3626309	Msa0584360:CDS
AAGAATTGCTAGGGATGTGT+TGG	0.551988	4_2:+3626157	Msa0584360:CDS
AAGCTGCCCAAGATGCTGGT+TGG	0.527754	4_2:-3626315	None:intergenic
AAGTTGCTAATTTAGCTGGC+TGG	0.459052	4_2:+3624902	Msa0584360:CDS
AATATCAAACGCACTTCTTA+GGG	0.450712	4_2:+3624624	Msa0584360:CDS
AATGAAAACTACACAGCACG+TGG	0.685108	4_2:-3626371	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATATCAAACGCACTTCTT+AGG	+	chr4_2:3624623-3624642	Msa0584360:CDS	30.0%
AATATCAAACGCACTTCTTA+GGG	+	chr4_2:3624624-3624643	Msa0584360:CDS	30.0%
ACTTGACTGTAAAAGGAATA+TGG	+	chr4_2:3624732-3624751	Msa0584360:CDS	30.0%
CTTGACTGTAAAAGGAATAT+GGG	+	chr4_2:3624733-3624752	Msa0584360:CDS	30.0%
GGATCTATACCATAAAAAAC+AGG	-	chr4_2:3624772-3624791	None:intergenic	30.0%
CTAAACATGAGCAACAATTT+AGG	+	chr4_2:3624836-3624855	Msa0584360:CDS	30.0%
TCTATAATATTCAAGTGGTG+GGG	-	chr4_2:3625728-3625747	None:intergenic	30.0%
CTCTATAATATTCAAGTGGT+GGG	-	chr4_2:3625729-3625748	None:intergenic	30.0%
TCTCTATAATATTCAAGTGG+TGG	-	chr4_2:3625730-3625749	None:intergenic	30.0%
CGGTGATTTGAATTTCTTTA+TGG	+	chr4_2:3625798-3625817	Msa0584360:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	3624451	3626385	3624451	ID=Msa0584360;Name=Msa0584360
chr4_2	mRNA	3624451	3626385	3624451	ID=Msa0584360-mRNA-1;Parent=Msa0584360;Name=Msa0584360-mRNA-1;_AED=0.72;_eAED=0.72;_QI=0\|0\|0\|0.5\|1\|1\|2\|0\|246
chr4_2	exon	3624451	3624941	3624451	ID=Msa0584360-mRNA-1:exon:1024;Parent=Msa0584360-mRNA-1
chr4_2	exon	3626136	3626385	3626136	ID=Msa0584360-mRNA-1:exon:1025;Parent=Msa0584360-mRNA-1
chr4_2	CDS	3624451	3624941	3624451	ID=Msa0584360-mRNA-1:cds;Parent=Msa0584360-mRNA-1
chr4_2	CDS	3626136	3626385	3626136	ID=Msa0584360-mRNA-1:cds;Parent=Msa0584360-mRNA-1

Gene Sequence

>Msa0584360

ATGCCTTACATGGCACAATCATCATCCTCCAACATTCCCCAAAATACTCACGAGGTATTCCTTAGCTTTAGGGGAGAGGACACACGCTATAACTTCACAAGCCATCTTCATGCTTGCTTAACAAGGTTTCAAATCAAAACCTACATAGACTACAATCTTGTGAGAGGGGATGAAATATCAAACGCACTTCTTAGGGCAATTGAGGAGTCAAAGCTTTCTGTGGTTGTTTTGTCTGAAAACTATGCTAATTCAAAGTGGTGTTTGGATGAACTTGTGAAAATACTTGACTGTAAAAGGAATATGGGACAAGTTGTAGTGCCTGTTTTTTATGGTATAGATCCTTCTAGTGTTCGTAATCAAACAGGAGGTTATGGAATTGCTTTTGCTAAACATGAGCAACAATTTAGGAACAATATGAATAAGGTGCTAAGGTGGAGGAGTGCTTTGGCTGAAGTTGCTAATTTAGCTGGCTGGGATTGCTCTCTTAATAGCATGGAATCCGAACTCGTGGAAAGAATTGCTAGGGATGTGTTGGAGAAATTGAATCATGTGTATGTTGGTGACATAGATGAGGAAATCAATAAATATGAGCAACTATCAAACCTACAAGCAATGAATCTCATGCGTGGAAGTGGATTCAATACTCAACTATGGAATGATCTTCAAGAAACCAACCAGCATCTTGGGCAGCTTAGAATGAAGAAAAACGTTATTCTACTTAGATTGCCACGTGCTGTGTAG

Protein sequence

>Msa0584360

MPYMAQSSSSNIPQNTHEVFLSFRGEDTRYNFTSHLHACLTRFQIKTYIDYNLVRGDEISNALLRAIEESKLSVVVLSENYANSKWCLDELVKILDCKRNMGQVVVPVFYGIDPSSVRNQTGGYGIAFAKHEQQFRNNMNKVLRWRSALAEVANLAGWDCSLNSMESELVERIARDVLEKLNHVYVGDIDEEINKYEQLSNLQAMNLMRGSGFNTQLWNDLQETNQHLGQLRMKKNVILLRLPRAV*