Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0085110 | sp|P93324|CHOMT_MEDSA | 100.000 | 372 | 0 | 0 | 1 | 372 | 1 | 372 | 0.0 | 771 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0085110 | A0A072VZR2 | 98.656 | 372 | 5 | 0 | 1 | 372 | 1 | 372 | 0.0 | 763 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0010150 | Msa0085110 | 0.846961 | 1.562894e-59 | -8.615850e-47 |
Msa0046390 | Msa0085110 | 0.979341 | 9.323992e-148 | -8.615850e-47 |
Msa0059880 | Msa0085110 | 0.843841 | 1.093227e-58 | -8.615850e-47 |
Msa0085110 | Msa0095910 | 0.801548 | 8.550434e-49 | -8.615850e-47 |
Msa0085110 | Msa0096860 | 0.801907 | 7.214833e-49 | -8.615850e-47 |
Msa0085110 | Msa0107830 | 0.813533 | 2.438847e-51 | -8.615850e-47 |
Msa0085110 | Msa0150910 | 0.848481 | 5.965066e-60 | -8.615850e-47 |
Msa0085110 | Msa0150920 | 0.826596 | 2.487341e-54 | -8.615850e-47 |
Msa0085110 | Msa0154750 | 0.804731 | 1.876454e-49 | -8.615850e-47 |
Msa0085110 | Msa0160580 | 0.808921 | 2.442466e-50 | -8.615850e-47 |
Msa0085110 | Msa0177540 | 0.803031 | 4.232930e-49 | -8.615850e-47 |
Msa0085110 | Msa0177550 | 0.925686 | 1.310202e-90 | -8.615850e-47 |
Msa0085110 | Msa0190670 | 0.810925 | 9.046650e-51 | -8.615850e-47 |
Msa0085110 | Msa0194230 | 0.830857 | 2.319031e-55 | -8.615850e-47 |
Msa0085110 | Msa0195190 | 0.815696 | 8.098377e-52 | -8.615850e-47 |
Msa0085110 | Msa0197020 | 0.805616 | 1.224867e-49 | -8.615850e-47 |
Msa0085110 | Msa0207640 | 0.823057 | 1.700309e-53 | -8.615850e-47 |
Msa0085110 | Msa0212550 | 0.833496 | 5.157802e-56 | -8.615850e-47 |
Msa0085110 | Msa0234120 | 0.813350 | 2.676215e-51 | -8.615850e-47 |
Msa0085110 | Msa0252930 | 0.813299 | 2.746003e-51 | -8.615850e-47 |
Msa0085110 | Msa0259110 | 0.822355 | 2.475856e-53 | -8.615850e-47 |
Msa0085110 | Msa0259300 | 0.818336 | 2.066893e-52 | -8.615850e-47 |
Msa0085110 | Msa0274250 | 0.844015 | 9.822764e-59 | -8.615850e-47 |
Msa0085110 | Msa0274260 | 0.839736 | 1.325610e-57 | -8.615850e-47 |
Msa0085110 | Msa0276780 | 0.807491 | 4.924611e-50 | -8.615850e-47 |
Msa0085110 | Msa0278950 | 0.834371 | 3.116033e-56 | -8.615850e-47 |
Msa0085110 | Msa0287630 | 0.801352 | 9.375034e-49 | -8.615850e-47 |
Msa0085110 | Msa0287720 | 0.806565 | 7.735430e-50 | -8.615850e-47 |
Msa0085110 | Msa0308740 | 0.823418 | 1.400415e-53 | -8.615850e-47 |
Msa0085110 | Msa0314440 | 0.824069 | 9.854836e-54 | -8.615850e-47 |
Msa0085110 | Msa0316600 | 0.801903 | 7.228412e-49 | -8.615850e-47 |
Msa0085110 | Msa0318370 | 0.810627 | 1.049269e-50 | -8.615850e-47 |
Msa0085110 | Msa0319830 | 0.813758 | 2.176932e-51 | -8.615850e-47 |
Msa0085110 | Msa0342130 | 0.818303 | 2.103592e-52 | -8.615850e-47 |
Msa0085110 | Msa0342160 | 0.801772 | 7.689541e-49 | -8.615850e-47 |
Msa0085110 | Msa0346170 | 0.839016 | 2.039260e-57 | -8.615850e-47 |
Msa0085110 | Msa0366510 | 0.828828 | 7.234943e-55 | -8.615850e-47 |
Msa0085110 | Msa0374040 | 0.821816 | 3.300980e-53 | -8.615850e-47 |
Msa0085110 | Msa0378390 | 0.805592 | 1.238982e-49 | -8.615850e-47 |
Msa0085110 | Msa0390200 | 0.809994 | 1.436795e-50 | -8.615850e-47 |
Msa0085110 | Msa0396700 | 0.820411 | 6.958407e-53 | -8.615850e-47 |
Msa0085110 | Msa0396790 | 0.806505 | 7.962320e-50 | -8.615850e-47 |
Msa0085110 | Msa0414480 | 0.843251 | 1.571759e-58 | -8.615850e-47 |
Msa0085110 | Msa0418150 | 0.802670 | 5.025733e-49 | -8.615850e-47 |
Msa0085110 | Msa0418160 | 0.815669 | 8.211671e-52 | -8.615850e-47 |
Msa0085110 | Msa0423200 | 0.811733 | 6.039275e-51 | -8.615850e-47 |
Msa0085110 | Msa0444400 | 0.804942 | 1.695562e-49 | -8.615850e-47 |
Msa0085110 | Msa0445530 | 0.803179 | 3.943971e-49 | -8.615850e-47 |
Msa0085110 | Msa0464310 | 0.855499 | 6.055672e-62 | -8.615850e-47 |
Msa0085110 | Msa0469450 | 0.810035 | 1.407782e-50 | -8.615850e-47 |
Msa0085110 | Msa0491800 | 0.821941 | 3.089585e-53 | -8.615850e-47 |
Msa0085110 | Msa0491950 | 0.817574 | 3.072488e-52 | -8.615850e-47 |
Msa0085110 | Msa0515130 | 0.828542 | 8.485148e-55 | -8.615850e-47 |
Msa0085110 | Msa0515150 | 0.829291 | 5.588950e-55 | -8.615850e-47 |
Msa0085110 | Msa0535570 | 0.843093 | 1.731654e-58 | -8.615850e-47 |
Msa0085110 | Msa0538440 | 0.818795 | 1.626795e-52 | -8.615850e-47 |
Msa0085110 | Msa0538450 | 0.826713 | 2.332062e-54 | -8.615850e-47 |
Msa0085110 | Msa0538520 | 0.831676 | 1.458852e-55 | -8.615850e-47 |
Msa0085110 | Msa0538530 | 0.807169 | 5.764329e-50 | -8.615850e-47 |
Msa0085110 | Msa0546760 | 0.811707 | 6.118213e-51 | -8.615850e-47 |
Msa0085110 | Msa0554660 | 0.803320 | 3.688043e-49 | -8.615850e-47 |
Msa0085110 | Msa0591490 | 0.845293 | 4.445034e-59 | -8.615850e-47 |
Msa0085110 | Msa0594320 | 0.810297 | 1.236106e-50 | -8.615850e-47 |
Msa0085110 | Msa0594330 | 0.831271 | 1.834489e-55 | -8.615850e-47 |
Msa0085110 | Msa0597820 | 0.817326 | 3.494722e-52 | -8.615850e-47 |
Msa0085110 | Msa0630130 | 0.809499 | 1.836101e-50 | -8.615850e-47 |
Msa0085110 | Msa0631700 | 0.835167 | 1.964162e-56 | -8.615850e-47 |
Msa0085110 | Msa0634290 | 0.823739 | 1.177707e-53 | -8.615850e-47 |
Msa0085110 | Msa0637700 | 0.803416 | 3.522557e-49 | -8.615850e-47 |
Msa0085110 | Msa0640290 | 0.801089 | 1.061511e-48 | -8.615850e-47 |
Msa0085110 | Msa0643840 | 0.813891 | 2.034871e-51 | -8.615850e-47 |
Msa0085110 | Msa0668220 | 0.836540 | 8.814629e-57 | -8.615850e-47 |
Msa0085110 | Msa0668230 | 0.812241 | 4.682006e-51 | -8.615850e-47 |
Msa0085110 | Msa0670360 | 0.843839 | 1.094675e-58 | -8.615850e-47 |
Msa0085110 | Msa0671640 | 0.832724 | 8.027943e-56 | -8.615850e-47 |
Msa0085110 | Msa0678620 | 0.800919 | 1.149502e-48 | -8.615850e-47 |
Msa0085110 | Msa0682420 | 0.805338 | 1.401024e-49 | -8.615850e-47 |
Msa0085110 | Msa0711240 | 0.804918 | 1.715424e-49 | -8.615850e-47 |
Msa0085110 | Msa0728210 | 0.818440 | 1.958010e-52 | -8.615850e-47 |
Msa0085110 | Msa0728520 | 0.816755 | 4.695556e-52 | -8.615850e-47 |
Msa0085110 | Msa0751960 | 0.812019 | 5.232621e-51 | -8.615850e-47 |
Msa0085110 | Msa0776540 | 0.817424 | 3.321359e-52 | -8.615850e-47 |
Msa0085110 | Msa0777070 | 0.816458 | 5.474244e-52 | -8.615850e-47 |
Msa0085110 | Msa0787860 | 0.832597 | 8.630759e-56 | -8.615850e-47 |
Msa0085110 | Msa0789410 | 0.814066 | 1.861188e-51 | -8.615850e-47 |
Msa0085110 | Msa0792330 | 0.818782 | 1.637400e-52 | -8.615850e-47 |
Msa0085110 | Msa0798230 | 0.804095 | 2.546859e-49 | -8.615850e-47 |
Msa0085110 | Msa0799110 | 0.800300 | 1.537736e-48 | -8.615850e-47 |
Msa0085110 | Msa0799120 | 0.812460 | 4.193260e-51 | -8.615850e-47 |
Msa0085110 | Msa0806930 | 0.802025 | 6.822170e-49 | -8.615850e-47 |
Msa0085110 | Msa0814160 | 0.845063 | 5.129998e-59 | -8.615850e-47 |
Msa0085110 | Msa0816140 | 0.821268 | 4.419783e-53 | -8.615850e-47 |
Msa0085110 | Msa0824850 | 0.820857 | 5.494477e-53 | -8.615850e-47 |
Msa0085110 | Msa0824860 | 0.813797 | 2.134425e-51 | -8.615850e-47 |
Msa0085110 | Msa0831890 | 0.805242 | 1.467053e-49 | -8.615850e-47 |
Msa0085110 | Msa0836740 | 0.800120 | 1.672574e-48 | -8.615850e-47 |
Msa0085110 | Msa0854840 | 0.848291 | 6.729430e-60 | -8.615850e-47 |
Msa0085110 | Msa0861730 | 0.803969 | 2.704220e-49 | -8.615850e-47 |
Msa0085110 | Msa0863840 | 0.815911 | 7.251563e-52 | -8.615850e-47 |
Msa0085110 | Msa0863850 | 0.817384 | 3.390468e-52 | -8.615850e-47 |
Msa0085110 | Msa0863860 | 0.824369 | 8.380229e-54 | -8.615850e-47 |
Msa0085110 | Msa0864160 | 0.825646 | 4.183741e-54 | -8.615850e-47 |
Msa0085110 | Msa0874750 | 0.812028 | 5.208801e-51 | -8.615850e-47 |
Msa0085110 | Msa0883640 | 0.801019 | 1.096722e-48 | -8.615850e-47 |
Msa0085110 | Msa0896920 | 0.833403 | 5.440218e-56 | -8.615850e-47 |
Msa0085110 | Msa0910830 | 0.814474 | 1.512847e-51 | -8.615850e-47 |
Msa0085110 | Msa0932930 | 0.814539 | 1.463393e-51 | -8.615850e-47 |
Msa0085110 | Msa0941120 | 0.807065 | 6.062252e-50 | -8.615850e-47 |
Msa0085110 | Msa0960090 | 0.801525 | 8.643762e-49 | -8.615850e-47 |
Msa0085110 | Msa0976400 | 0.803060 | 4.175185e-49 | -8.615850e-47 |
Msa0085110 | Msa0985700 | 0.802916 | 4.469775e-49 | -8.615850e-47 |
Msa0085110 | Msa0987640 | 0.800572 | 1.353150e-48 | -8.615850e-47 |
Msa0085110 | Msa0996980 | 0.819647 | 1.040496e-52 | -8.615850e-47 |
Msa0085110 | Msa1006030 | 0.828550 | 8.447585e-55 | -8.615850e-47 |
Msa0085110 | Msa1006170 | 0.817019 | 4.096990e-52 | -8.615850e-47 |
Msa0085110 | Msa1022490 | 0.830989 | 2.152448e-55 | -8.615850e-47 |
Msa0085110 | Msa1022510 | 0.831698 | 1.440561e-55 | -8.615850e-47 |
Msa0085110 | Msa1024350 | 0.823325 | 1.472087e-53 | -8.615850e-47 |
Msa0085110 | Msa1024420 | 0.802317 | 5.942364e-49 | -8.615850e-47 |
Msa0085110 | Msa1035050 | 0.804970 | 1.672815e-49 | -8.615850e-47 |
Msa0085110 | Msa1048350 | 0.816822 | 4.535590e-52 | -8.615850e-47 |
Msa0085110 | Msa1048390 | 0.815168 | 1.061225e-51 | -8.615850e-47 |
Msa0085110 | Msa1049400 | 0.808175 | 3.524396e-50 | -8.615850e-47 |
Msa0085110 | Msa1061670 | 0.857730 | 1.337726e-62 | -8.615850e-47 |
Msa0085110 | Msa1061840 | 0.803361 | 3.616946e-49 | -8.615850e-47 |
Msa0085110 | Msa1064940 | 0.838971 | 2.093789e-57 | -8.615850e-47 |
Msa0085110 | Msa1075090 | 0.802608 | 5.174163e-49 | -8.615850e-47 |
Msa0085110 | Msa1081610 | 0.800110 | 1.680525e-48 | -8.615850e-47 |
Msa0085110 | Msa1087370 | 0.837670 | 4.531374e-57 | -8.615850e-47 |
Msa0085110 | Msa1087380 | 0.833282 | 5.832473e-56 | -8.615850e-47 |
Msa0085110 | Msa1100330 | 0.827988 | 1.153817e-54 | -8.615850e-47 |
Msa0085110 | Msa1106680 | 0.828882 | 7.023159e-55 | -8.615850e-47 |
Msa0085110 | Msa1106960 | 0.856625 | 2.834351e-62 | -8.615850e-47 |
Msa0085110 | Msa1109890 | 0.804023 | 2.636184e-49 | -8.615850e-47 |
Msa0085110 | Msa1110040 | 0.805744 | 1.151660e-49 | -8.615850e-47 |
Msa0085110 | Msa1138110 | 0.816336 | 5.826895e-52 | -8.615850e-47 |
Msa0085110 | Msa1147030 | 0.819668 | 1.029232e-52 | -8.615850e-47 |
Msa0085110 | Msa1148210 | 0.807930 | 3.974106e-50 | -8.615850e-47 |
Msa0085110 | Msa1153690 | 0.837345 | 5.490403e-57 | -8.615850e-47 |
Msa0085110 | Msa1173290 | 0.844049 | 9.617432e-59 | -8.615850e-47 |
Msa0085110 | Msa1177090 | 0.839906 | 1.197430e-57 | -8.615850e-47 |
Msa0085110 | Msa1206330 | 0.803601 | 3.224506e-49 | -8.615850e-47 |
Msa0085110 | Msa1206380 | 0.809849 | 1.544047e-50 | -8.615850e-47 |
Msa0085110 | Msa1208140 | 0.800349 | 1.502527e-48 | -8.615850e-47 |
Msa0085110 | Msa1256730 | 0.807530 | 4.831942e-50 | -8.615850e-47 |
Msa0085110 | Msa1296490 | 0.812870 | 3.411131e-51 | -8.615850e-47 |
Msa0085110 | Msa1298090 | 0.811321 | 7.422341e-51 | -8.615850e-47 |
Msa0085110 | Msa1316960 | 0.811798 | 5.847650e-51 | -8.615850e-47 |
Msa0085110 | Msa1323030 | 0.807936 | 3.961074e-50 | -8.615850e-47 |
Msa0085110 | Msa1323150 | 0.813247 | 2.819802e-51 | -8.615850e-47 |
Msa0085110 | Msa1341030 | 0.972909 | 1.533435e-135 | -8.615850e-47 |
Msa0085110 | Msa1355340 | 0.843199 | 1.623016e-58 | -8.615850e-47 |
Msa0085110 | Msa1357840 | 0.829167 | 5.990256e-55 | -8.615850e-47 |
Msa0085110 | Msa1411550 | 0.845811 | 3.217250e-59 | -8.615850e-47 |
Msa0085110 | Msa1412360 | 0.800658 | 1.299807e-48 | -8.615850e-47 |
Msa0085110 | Msa1419390 | 0.817475 | 3.235235e-52 | -8.615850e-47 |
Msa0085110 | Msa1453650 | 0.808755 | 2.650110e-50 | -8.615850e-47 |
Msa0085110 | Msa1459610 | 0.804966 | 1.676310e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0085110 | MtrunA17_Chr1g0200491 | 98.656 | 372 | 5 | 0 | 1 | 372 | 1 | 372 | 0.0 | 763 |
Msa0085110 | MtrunA17_Chr7g0218131 | 65.684 | 373 | 124 | 3 | 1 | 372 | 1 | 370 | 0.0 | 508 |
Msa0085110 | MtrunA17_Chr7g0218261 | 64.110 | 365 | 128 | 2 | 8 | 372 | 7 | 368 | 6.61e-173 | 486 |
Msa0085110 | MtrunA17_Chr7g0218211 | 61.749 | 366 | 136 | 3 | 8 | 372 | 7 | 369 | 4.71e-167 | 471 |
Msa0085110 | MtrunA17_Chr7g0218181 | 61.308 | 367 | 133 | 3 | 8 | 372 | 8 | 367 | 1.89e-165 | 467 |
Msa0085110 | MtrunA17_Chr7g0218301 | 59.043 | 376 | 149 | 3 | 1 | 372 | 1 | 375 | 8.29e-161 | 455 |
Msa0085110 | MtrunA17_Chr2g0307521 | 61.473 | 353 | 131 | 3 | 21 | 372 | 15 | 363 | 1.52e-160 | 454 |
Msa0085110 | MtrunA17_Chr7g0218271 | 57.979 | 376 | 153 | 3 | 1 | 372 | 1 | 375 | 4.15e-159 | 451 |
Msa0085110 | MtrunA17_Chr3g0085201 | 57.341 | 361 | 149 | 4 | 13 | 372 | 1 | 357 | 5.51e-144 | 412 |
Msa0085110 | MtrunA17_Chr3g0085211 | 56.657 | 353 | 148 | 4 | 21 | 372 | 22 | 370 | 5.78e-140 | 402 |
Msa0085110 | MtrunA17_Chr1g0163601 | 52.973 | 370 | 166 | 6 | 7 | 372 | 5 | 370 | 4.20e-135 | 390 |
Msa0085110 | MtrunA17_Chr1g0163611 | 51.630 | 368 | 171 | 5 | 9 | 372 | 6 | 370 | 5.22e-134 | 387 |
Msa0085110 | MtrunA17_Chr1g0163621 | 51.475 | 373 | 166 | 6 | 12 | 372 | 15 | 384 | 1.96e-128 | 374 |
Msa0085110 | MtrunA17_Chr3g0128011 | 48.901 | 364 | 179 | 6 | 10 | 372 | 60 | 417 | 1.10e-118 | 350 |
Msa0085110 | MtrunA17_Chr5g0448091 | 44.633 | 354 | 191 | 5 | 20 | 372 | 14 | 363 | 1.15e-101 | 305 |
Msa0085110 | MtrunA17_Chr7g0276401 | 42.623 | 366 | 203 | 6 | 8 | 372 | 16 | 375 | 2.40e-91 | 279 |
Msa0085110 | MtrunA17_Chr8g0367441 | 40.720 | 361 | 201 | 8 | 18 | 372 | 24 | 377 | 8.68e-86 | 265 |
Msa0085110 | MtrunA17_Chr7g0276411 | 38.965 | 367 | 209 | 8 | 13 | 372 | 4 | 362 | 2.06e-84 | 260 |
Msa0085110 | MtrunA17_Chr8g0367451 | 39.833 | 359 | 207 | 7 | 18 | 372 | 23 | 376 | 3.76e-83 | 258 |
Msa0085110 | MtrunA17_Chr8g0367491 | 39.429 | 350 | 204 | 6 | 26 | 372 | 32 | 376 | 3.50e-81 | 253 |
Msa0085110 | MtrunA17_Chr8g0367501 | 39.237 | 367 | 214 | 7 | 11 | 372 | 3 | 365 | 5.92e-77 | 243 |
Msa0085110 | MtrunA17_Chr8g0367381 | 39.571 | 326 | 170 | 7 | 18 | 339 | 24 | 326 | 2.71e-71 | 226 |
Msa0085110 | MtrunA17_Chr8g0345851 | 44.106 | 263 | 144 | 3 | 111 | 372 | 30 | 290 | 1.56e-69 | 220 |
Msa0085110 | MtrunA17_Chr3g0130011 | 36.800 | 375 | 208 | 11 | 9 | 372 | 2 | 358 | 7.53e-64 | 207 |
Msa0085110 | MtrunA17_Chr2g0314271 | 34.195 | 348 | 216 | 5 | 13 | 356 | 1 | 339 | 4.20e-63 | 205 |
Msa0085110 | MtrunA17_Chr3g0130061 | 35.121 | 373 | 217 | 10 | 9 | 372 | 2 | 358 | 1.02e-59 | 197 |
Msa0085110 | MtrunA17_Chr4g0022021 | 35.168 | 327 | 186 | 12 | 41 | 357 | 44 | 354 | 7.77e-51 | 174 |
Msa0085110 | MtrunA17_Chr4g0021981 | 34.985 | 323 | 192 | 8 | 41 | 357 | 44 | 354 | 2.43e-50 | 172 |
Msa0085110 | MtrunA17_Chr3g0121301 | 31.579 | 323 | 204 | 7 | 39 | 357 | 38 | 347 | 5.10e-48 | 166 |
Msa0085110 | MtrunA17_Chr5g0432251 | 28.012 | 332 | 221 | 7 | 34 | 358 | 26 | 346 | 1.40e-46 | 162 |
Msa0085110 | MtrunA17_Chr6g0482291 | 42.938 | 177 | 91 | 3 | 197 | 372 | 9 | 176 | 5.94e-46 | 155 |
Msa0085110 | MtrunA17_Chr5g0432301 | 30.422 | 332 | 213 | 7 | 34 | 358 | 27 | 347 | 1.45e-45 | 160 |
Msa0085110 | MtrunA17_Chr7g0219141 | 29.907 | 321 | 213 | 5 | 41 | 358 | 33 | 344 | 6.73e-44 | 155 |
Msa0085110 | MtrunA17_Chr7g0219161 | 29.283 | 321 | 215 | 6 | 41 | 358 | 33 | 344 | 6.78e-44 | 155 |
Msa0085110 | MtrunA17_Chr5g0432241 | 29.518 | 332 | 216 | 8 | 34 | 358 | 27 | 347 | 5.37e-43 | 153 |
Msa0085110 | MtrunA17_Chr1g0188391 | 29.938 | 324 | 211 | 7 | 41 | 357 | 33 | 347 | 7.31e-42 | 150 |
Msa0085110 | MtrunA17_Chr1g0188371 | 29.653 | 317 | 204 | 8 | 38 | 346 | 30 | 335 | 1.40e-41 | 149 |
Msa0085110 | MtrunA17_Chr5g0432211 | 29.565 | 345 | 210 | 10 | 34 | 371 | 26 | 344 | 1.78e-41 | 148 |
Msa0085110 | MtrunA17_Chr4g0014561 | 30.618 | 356 | 229 | 8 | 13 | 357 | 1 | 349 | 1.18e-40 | 147 |
Msa0085110 | MtrunA17_Chr4g0046531 | 29.630 | 324 | 213 | 5 | 38 | 357 | 30 | 342 | 2.08e-40 | 151 |
Msa0085110 | MtrunA17_Chr4g0046531 | 29.412 | 340 | 220 | 8 | 38 | 371 | 392 | 717 | 3.24e-38 | 145 |
Msa0085110 | MtrunA17_Chr4g0014681 | 30.618 | 356 | 229 | 8 | 13 | 357 | 1 | 349 | 2.09e-40 | 146 |
Msa0085110 | MtrunA17_Chr7g0223231 | 29.878 | 328 | 202 | 8 | 38 | 357 | 29 | 336 | 3.53e-40 | 145 |
Msa0085110 | MtrunA17_Chr7g0223241 | 29.518 | 332 | 206 | 8 | 34 | 357 | 25 | 336 | 1.01e-39 | 144 |
Msa0085110 | MtrunA17_Chr4g0046361 | 31.765 | 340 | 215 | 9 | 34 | 365 | 26 | 356 | 4.12e-39 | 142 |
Msa0085110 | MtrunA17_Chr4g0014641 | 30.982 | 326 | 211 | 7 | 40 | 358 | 32 | 350 | 3.48e-38 | 140 |
Msa0085110 | MtrunA17_Chr4g0040621 | 28.732 | 355 | 222 | 12 | 19 | 358 | 18 | 356 | 3.50e-38 | 140 |
Msa0085110 | MtrunA17_Chr8g0367401 | 52.727 | 110 | 52 | 0 | 166 | 275 | 2 | 111 | 7.80e-37 | 130 |
Msa0085110 | MtrunA17_Chr5g0432261 | 27.463 | 335 | 191 | 9 | 34 | 358 | 22 | 314 | 3.18e-34 | 129 |
Msa0085110 | MtrunA17_Chr4g0046341 | 31.686 | 344 | 213 | 9 | 34 | 365 | 26 | 359 | 2.96e-33 | 127 |
Msa0085110 | MtrunA17_Chr4g0014661 | 30.484 | 351 | 222 | 8 | 17 | 357 | 5 | 343 | 7.13e-31 | 120 |
Msa0085110 | MtrunA17_Chr4g0014591 | 30.199 | 351 | 223 | 8 | 17 | 357 | 5 | 343 | 2.72e-29 | 116 |
Msa0085110 | MtrunA17_Chr1g0170941 | 67.105 | 76 | 25 | 0 | 197 | 272 | 1 | 76 | 3.09e-29 | 108 |
Msa0085110 | MtrunA17_Chr1g0170931 | 49.138 | 116 | 55 | 2 | 26 | 139 | 6 | 119 | 1.51e-27 | 105 |
Msa0085110 | MtrunA17_Chr8g0367461 | 41.593 | 113 | 64 | 2 | 261 | 372 | 1 | 112 | 3.84e-25 | 98.6 |
Msa0085110 | MtrunA17_Chr8g0367421 | 41.818 | 110 | 47 | 1 | 166 | 275 | 2 | 94 | 4.93e-24 | 95.9 |
Msa0085110 | MtrunA17_Chr4g0014601 | 30.224 | 268 | 167 | 8 | 17 | 277 | 5 | 259 | 2.11e-23 | 98.2 |
Msa0085110 | MtrunA17_Chr7g0219171 | 33.333 | 120 | 76 | 2 | 242 | 358 | 117 | 235 | 4.83e-21 | 91.3 |
Msa0085110 | MtrunA17_Chr6g0476581 | 55.682 | 88 | 32 | 3 | 8 | 93 | 8 | 90 | 1.54e-19 | 83.2 |
Msa0085110 | MtrunA17_Chr1g0170951 | 47.945 | 73 | 38 | 0 | 283 | 355 | 17 | 89 | 1.79e-18 | 80.1 |
Msa0085110 | MtrunA17_Chr8g0367391 | 35.772 | 123 | 72 | 3 | 251 | 372 | 18 | 134 | 2.91e-17 | 77.8 |
Msa0085110 | MtrunA17_Chr8g0367471 | 51.471 | 68 | 33 | 0 | 189 | 256 | 1 | 68 | 1.03e-15 | 72.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0085110 | AT5G54160.1 | 48.837 | 344 | 169 | 4 | 20 | 362 | 15 | 352 | 2.06e-113 | 335 |
Msa0085110 | AT1G51990.2 | 39.945 | 363 | 209 | 6 | 12 | 371 | 5 | 361 | 2.39e-91 | 278 |
Msa0085110 | AT1G51990.1 | 39.945 | 363 | 209 | 6 | 12 | 371 | 5 | 361 | 1.17e-90 | 277 |
Msa0085110 | AT1G77520.1 | 40.160 | 376 | 205 | 9 | 6 | 372 | 17 | 381 | 1.66e-87 | 269 |
Msa0085110 | AT1G33030.1 | 40.286 | 350 | 195 | 8 | 28 | 372 | 10 | 350 | 6.64e-80 | 249 |
Msa0085110 | AT1G63140.2 | 38.564 | 376 | 217 | 8 | 6 | 372 | 11 | 381 | 7.15e-79 | 247 |
Msa0085110 | AT1G63140.4 | 39.612 | 361 | 204 | 8 | 21 | 372 | 46 | 401 | 1.01e-78 | 248 |
Msa0085110 | AT1G21130.1 | 40.510 | 353 | 198 | 9 | 26 | 372 | 27 | 373 | 3.02e-77 | 243 |
Msa0085110 | AT1G77530.1 | 40.107 | 374 | 208 | 8 | 6 | 372 | 17 | 381 | 1.75e-75 | 238 |
Msa0085110 | AT1G21110.1 | 40.227 | 353 | 199 | 9 | 26 | 372 | 27 | 373 | 2.31e-75 | 238 |
Msa0085110 | AT1G21100.1 | 40.510 | 353 | 198 | 9 | 26 | 372 | 27 | 373 | 2.41e-75 | 238 |
Msa0085110 | AT1G21120.1 | 39.943 | 353 | 200 | 9 | 26 | 372 | 27 | 373 | 1.64e-74 | 236 |
Msa0085110 | AT1G21120.2 | 39.660 | 353 | 201 | 9 | 26 | 372 | 75 | 421 | 5.92e-74 | 236 |
Msa0085110 | AT5G53810.1 | 39.181 | 342 | 199 | 6 | 38 | 372 | 39 | 378 | 2.65e-72 | 230 |
Msa0085110 | AT1G76790.1 | 37.815 | 357 | 204 | 8 | 26 | 372 | 17 | 365 | 9.06e-67 | 216 |
Msa0085110 | AT3G53140.1 | 35.530 | 349 | 207 | 7 | 17 | 356 | 5 | 344 | 1.92e-62 | 204 |
Msa0085110 | AT5G37170.1 | 37.730 | 326 | 160 | 9 | 56 | 372 | 43 | 334 | 1.46e-60 | 198 |
Msa0085110 | AT1G62900.1 | 45.320 | 203 | 108 | 3 | 172 | 372 | 4 | 205 | 1.65e-55 | 181 |
Msa0085110 | AT1G33030.3 | 40.079 | 252 | 143 | 5 | 28 | 277 | 10 | 255 | 1.29e-53 | 179 |
Msa0085110 | AT1G33030.2 | 40.161 | 249 | 141 | 5 | 28 | 274 | 10 | 252 | 1.26e-52 | 176 |
Msa0085110 | AT5G37170.2 | 44.444 | 198 | 106 | 4 | 178 | 372 | 38 | 234 | 3.06e-51 | 171 |
Msa0085110 | AT1G63140.1 | 38.697 | 261 | 149 | 5 | 21 | 274 | 46 | 302 | 1.70e-49 | 169 |
Msa0085110 | AT1G21130.2 | 43.083 | 253 | 135 | 6 | 26 | 274 | 27 | 274 | 3.18e-49 | 168 |
Msa0085110 | AT5G37170.3 | 44.920 | 187 | 99 | 4 | 189 | 372 | 1 | 186 | 2.29e-48 | 162 |
Msa0085110 | AT4G35150.1 | 38.073 | 218 | 115 | 7 | 162 | 365 | 105 | 316 | 7.59e-43 | 152 |
Msa0085110 | AT4G35160.1 | 31.522 | 368 | 217 | 12 | 9 | 357 | 16 | 367 | 1.58e-42 | 152 |
Msa0085110 | AT1G63140.3 | 37.288 | 236 | 137 | 5 | 21 | 249 | 46 | 277 | 3.88e-38 | 138 |
Msa0085110 | AT1G77530.2 | 37.751 | 249 | 142 | 5 | 6 | 249 | 17 | 257 | 1.20e-37 | 137 |
Find 75 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCCTTTATTAATGGATATT+TGG | 0.122440 | 1_2:-65059616 | None:intergenic |
AAGTTAATTCCCTTTATTAA+TGG | 0.172707 | 1_2:-65059624 | None:intergenic |
TCACTTGTGTTTGGTTCTTC+TGG | 0.194077 | 1_2:-65060120 | None:intergenic |
TGATGAAAGTAGAGGTTATT+TGG | 0.221768 | 1_2:+65059051 | Msa0085110:CDS |
GAAAATGCACCACCACTTTC+AGG | 0.245970 | 1_2:+65059666 | Msa0085110:CDS |
ACGGCAAGCAACTTGAAATT+TGG | 0.263471 | 1_2:-65060250 | None:intergenic |
ATCCAAATATCCATTAATAA+AGG | 0.266045 | 1_2:+65059614 | Msa0085110:CDS |
ATCCTGCATTATTACAAGTT+TGG | 0.305992 | 1_2:+65059098 | Msa0085110:CDS |
TGCCGTGCTTTCAACAGTTT+GGG | 0.308799 | 1_2:+65060267 | Msa0085110:CDS |
TTGCCGTGCTTTCAACAGTT+TGG | 0.318040 | 1_2:+65060266 | Msa0085110:CDS |
TTAGATTCTTCACTTGTGTT+TGG | 0.326373 | 1_2:-65060129 | None:intergenic |
GACTTGTTCAAGAACGTTCA+TGG | 0.340035 | 1_2:+65059411 | Msa0085110:CDS |
TGTAGGCTGTATGCCATAAT+TGG | 0.348746 | 1_2:+65060010 | Msa0085110:intron |
GTTCTGAGGTAGCACTAATT+TGG | 0.352301 | 1_2:-65058709 | None:intergenic |
GGTGGTGCCGAGAGAGTTTA+CGG | 0.386591 | 1_2:+65058998 | Msa0085110:CDS |
AGCACTCGGACTTGCCTAAT+AGG | 0.390804 | 1_2:+65058906 | Msa0085110:CDS |
AGTGACAAAGTATGAATTCA+TGG | 0.400109 | 1_2:+65059434 | Msa0085110:CDS |
GTTATCCTCCTTGGTAATGT+AGG | 0.401834 | 1_2:-65058687 | None:intergenic |
ACTAATTTGGTTATCCTCCT+TGG | 0.402910 | 1_2:-65058696 | None:intergenic |
TCCAAATATCCATTAATAAA+GGG | 0.404369 | 1_2:+65059615 | Msa0085110:CDS |
TATACTTACCTTCAGTATCA+TGG | 0.410761 | 1_2:-65059865 | None:intergenic |
AGCATGCGGTCAAGCCTATT+AGG | 0.413248 | 1_2:-65058920 | None:intergenic |
TGAAATATACACTGGATTTG+AGG | 0.429712 | 1_2:+65059533 | Msa0085110:CDS |
CACAAAGCTTTATCACCAAA+TGG | 0.430052 | 1_2:+65060069 | Msa0085110:CDS |
AAATAACCTCTACTTTCATC+AGG | 0.441916 | 1_2:-65059049 | None:intergenic |
GAGAAATTGAGCAAACTCTC+TGG | 0.445194 | 1_2:+65060222 | Msa0085110:CDS |
GAAATATACACTGGATTTGA+GGG | 0.446533 | 1_2:+65059534 | Msa0085110:CDS |
GTTGATGTTGGAGGTGGAAG+TGG | 0.451719 | 1_2:+65059570 | Msa0085110:CDS |
ATAGCAGCATTTAACACTGC+TGG | 0.468445 | 1_2:-65058788 | None:intergenic |
CTCATGTTTATCACAGTTGG+TGG | 0.480360 | 1_2:+65060174 | Msa0085110:CDS |
TATGTTTGCAAGTGTTCCAC+AGG | 0.500462 | 1_2:+65059836 | Msa0085110:CDS |
ATATCAACATTAGTTGATGT+TGG | 0.501358 | 1_2:+65059558 | Msa0085110:CDS |
ACATTAGTTGATGTTGGAGG+TGG | 0.504612 | 1_2:+65059564 | Msa0085110:CDS |
GAGAGTTTACGGACTCTCAA+TGG | 0.504711 | 1_2:+65059009 | Msa0085110:CDS |
TAAGGGATTGAGCATGTTGG+AGG | 0.505746 | 1_2:+65059810 | Msa0085110:intron |
AATCTCATGTTTATCACAGT+TGG | 0.506086 | 1_2:+65060171 | Msa0085110:CDS |
CTCGGCACCACCATCCTCAA+TGG | 0.508530 | 1_2:-65058987 | None:intergenic |
TGCTGGATAAACAAGATTAG+TGG | 0.509486 | 1_2:-65058771 | None:intergenic |
TTTATTTGAGATCATAGCTA+AGG | 0.511778 | 1_2:+65058820 | Msa0085110:CDS |
TTTCAACAGTTTGGGAGTGA+TGG | 0.524643 | 1_2:+65060275 | Msa0085110:CDS |
ATCCTCAATGGTTCGAGTAG+TGG | 0.527799 | 1_2:-65058975 | None:intergenic |
TGTTTATCACAGTTGGTGGA+AGG | 0.529690 | 1_2:+65060178 | Msa0085110:CDS |
TCCGAGTGCTGCGTTGATGC+TGG | 0.530284 | 1_2:-65058893 | None:intergenic |
TACCAAACTTGTAATAATGC+AGG | 0.531997 | 1_2:-65059100 | None:intergenic |
GTTTATCACAGTTGGTGGAA+GGG | 0.544261 | 1_2:+65060179 | Msa0085110:CDS |
AAAGTATGAATTCATGGGAA+AGG | 0.556043 | 1_2:+65059440 | Msa0085110:CDS |
ACCAGCATCAACGCAGCACT+CGG | 0.557596 | 1_2:+65058892 | Msa0085110:CDS |
TTCCACTACTCGAACCATTG+AGG | 0.558053 | 1_2:+65058973 | Msa0085110:CDS |
TATCATGTTATACCTGAAAG+TGG | 0.563244 | 1_2:-65059678 | None:intergenic |
GTGACAAAGTATGAATTCAT+GGG | 0.563593 | 1_2:+65059435 | Msa0085110:CDS |
ATAGCTAAGGCAACACCACC+TGG | 0.567142 | 1_2:+65058833 | Msa0085110:CDS |
TCAACATTAGTTGATGTTGG+AGG | 0.568137 | 1_2:+65059561 | Msa0085110:CDS |
CTCCCAAACTGTTGAAAGCA+CGG | 0.568203 | 1_2:-65060269 | None:intergenic |
AATTTAGAAGCAATTTCAGA+TGG | 0.568884 | 1_2:-65058869 | None:intergenic |
TGAGAGTCCGTAAACTCTCT+CGG | 0.571590 | 1_2:-65059005 | None:intergenic |
AGAATGCTTGAAATATACAC+TGG | 0.575900 | 1_2:+65059525 | Msa0085110:CDS |
TGTTAAGGGATTGAGCATGT+TGG | 0.581677 | 1_2:+65059807 | Msa0085110:intron |
CTCTACTTTCATCAGGGACA+AGG | 0.594593 | 1_2:-65059042 | None:intergenic |
ACTGTCTTCAGTTTGTTCTG+AGG | 0.597743 | 1_2:-65058723 | None:intergenic |
CAGTGCATGTCTTTCAGCAA+TGG | 0.602261 | 1_2:+65058742 | Msa0085110:CDS |
CTTGTCCCTGATGAAAGTAG+AGG | 0.618925 | 1_2:+65059043 | Msa0085110:CDS |
AAATGGAAAAGTGATTATTG+TGG | 0.620942 | 1_2:+65060086 | Msa0085110:CDS |
GATGGTGACATGAAAGCACC+AGG | 0.624085 | 1_2:-65058851 | None:intergenic |
GTTTACGGACTCTCAATGGT+CGG | 0.636343 | 1_2:+65059013 | Msa0085110:CDS |
ACTACTCGAACCATTGAGGA+TGG | 0.639748 | 1_2:+65058977 | Msa0085110:CDS |
TAGCAAGCAAACGCAGCATG+CGG | 0.640854 | 1_2:-65058934 | None:intergenic |
GGGAAATTCCTACATTACCA+AGG | 0.642464 | 1_2:+65058679 | Msa0085110:CDS |
AATAACCTCTACTTTCATCA+GGG | 0.648899 | 1_2:-65059048 | None:intergenic |
GGGTGATGCCATGATACTGA+AGG | 0.650842 | 1_2:+65059857 | Msa0085110:CDS |
ACTCGAACCATTGAGGATGG+TGG | 0.675966 | 1_2:+65058980 | Msa0085110:CDS |
ATGTTTGCAAGTGTTCCACA+GGG | 0.705139 | 1_2:+65059837 | Msa0085110:CDS |
AGTATCATGGCATCACCCTG+TGG | 0.705622 | 1_2:-65059852 | None:intergenic |
AAATTCCTACATTACCAAGG+AGG | 0.730361 | 1_2:+65058682 | Msa0085110:CDS |
CATGTTATACCTGAAAGTGG+TGG | 0.738842 | 1_2:-65059675 | None:intergenic |
GGTGACATGAAAGCACCAGG+TGG | 0.810388 | 1_2:-65058848 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TCATACATATATAAAATCAA+GGG | + | chr1_2:65059143-65059162 | Msa0085110:intron | 15.0% |
!! | TCATACATATATAAAATCAA+GGG | + | chr1_2:65059143-65059162 | Msa0085110:intron | 15.0% |
!! | CTCATACATATATAAAATCA+AGG | + | chr1_2:65059142-65059161 | Msa0085110:intron | 20.0% |
!! | ATATTCACCTATTAAACATA+TGG | + | chr1_2:65059195-65059214 | Msa0085110:intron | 20.0% |
!!! | CCATTGATTTGTTAAAAATT+TGG | - | chr1_2:65059479-65059498 | None:intergenic | 20.0% |
!!! | CCAAATTTTTAACAAATCAA+TGG | + | chr1_2:65059476-65059495 | Msa0085110:CDS | 20.0% |
!! | ATCCAAATATCCATTAATAA+AGG | + | chr1_2:65059614-65059633 | Msa0085110:CDS | 20.0% |
!! | TCCAAATATCCATTAATAAA+GGG | + | chr1_2:65059615-65059634 | Msa0085110:CDS | 20.0% |
!! | AAGTTAATTCCCTTTATTAA+TGG | - | chr1_2:65059627-65059646 | None:intergenic | 20.0% |
!! | AGTAAAACTTTAGTATAAGA+TGG | - | chr1_2:65059742-65059761 | None:intergenic | 20.0% |
!! | CTCATACATATATAAAATCA+AGG | + | chr1_2:65059142-65059161 | Msa0085110:intron | 20.0% |
!! | ATATTCACCTATTAAACATA+TGG | + | chr1_2:65059195-65059214 | Msa0085110:intron | 20.0% |
!!! | CCATTGATTTGTTAAAAATT+TGG | - | chr1_2:65059479-65059498 | None:intergenic | 20.0% |
!!! | CCAAATTTTTAACAAATCAA+TGG | + | chr1_2:65059476-65059495 | Msa0085110:CDS | 20.0% |
!! | ATCCAAATATCCATTAATAA+AGG | + | chr1_2:65059614-65059633 | Msa0085110:CDS | 20.0% |
!! | TCCAAATATCCATTAATAAA+GGG | + | chr1_2:65059615-65059634 | Msa0085110:CDS | 20.0% |
!! | AAGTTAATTCCCTTTATTAA+TGG | - | chr1_2:65059627-65059646 | None:intergenic | 20.0% |
!! | AGTAAAACTTTAGTATAAGA+TGG | - | chr1_2:65059742-65059761 | None:intergenic | 20.0% |
!! | TTTATTTGAGATCATAGCTA+AGG | + | chr1_2:65058820-65058839 | Msa0085110:CDS | 25.0% |
! | AATTTAGAAGCAATTTCAGA+TGG | - | chr1_2:65058872-65058891 | None:intergenic | 25.0% |
! | ATATCCTCCATATGTTTAAT+AGG | - | chr1_2:65059205-65059224 | None:intergenic | 25.0% |
! | GGAGGATATATAAGTTATAA+AGG | + | chr1_2:65059216-65059235 | Msa0085110:intron | 25.0% |
! | TTAAGCTAATTGTAGCAATT+AGG | + | chr1_2:65059298-65059317 | Msa0085110:intron | 25.0% |
!!! | TCTTACTTTTGTTCCAATTA+TGG | + | chr1_2:65059328-65059347 | Msa0085110:intron | 25.0% |
!! | ATATCAACATTAGTTGATGT+TGG | + | chr1_2:65059558-65059577 | Msa0085110:CDS | 25.0% |
!! | TCCCTTTATTAATGGATATT+TGG | - | chr1_2:65059619-65059638 | None:intergenic | 25.0% |
!! | GACTTTGTTTACATAATTGT+AGG | + | chr1_2:65059993-65060012 | Msa0085110:intron | 25.0% |
!! | ATTTTTCATCTGACCAATTA+TGG | - | chr1_2:65060026-65060045 | None:intergenic | 25.0% |
!!! | ACAATAATCACTTTTCCATT+TGG | - | chr1_2:65060087-65060106 | None:intergenic | 25.0% |
! | AAATGGAAAAGTGATTATTG+TGG | + | chr1_2:65060086-65060105 | Msa0085110:CDS | 25.0% |
!! | TTTATTTGAGATCATAGCTA+AGG | + | chr1_2:65058820-65058839 | Msa0085110:CDS | 25.0% |
! | AATTTAGAAGCAATTTCAGA+TGG | - | chr1_2:65058872-65058891 | None:intergenic | 25.0% |
! | ATATCCTCCATATGTTTAAT+AGG | - | chr1_2:65059205-65059224 | None:intergenic | 25.0% |
! | GGAGGATATATAAGTTATAA+AGG | + | chr1_2:65059216-65059235 | Msa0085110:intron | 25.0% |
! | TTAAGCTAATTGTAGCAATT+AGG | + | chr1_2:65059298-65059317 | Msa0085110:intron | 25.0% |
!!! | TCTTACTTTTGTTCCAATTA+TGG | + | chr1_2:65059328-65059347 | Msa0085110:intron | 25.0% |
!! | ATATCAACATTAGTTGATGT+TGG | + | chr1_2:65059558-65059577 | Msa0085110:CDS | 25.0% |
!! | TCCCTTTATTAATGGATATT+TGG | - | chr1_2:65059619-65059638 | None:intergenic | 25.0% |
!! | GACTTTGTTTACATAATTGT+AGG | + | chr1_2:65059993-65060012 | Msa0085110:intron | 25.0% |
!! | ATTTTTCATCTGACCAATTA+TGG | - | chr1_2:65060026-65060045 | None:intergenic | 25.0% |
!!! | ACAATAATCACTTTTCCATT+TGG | - | chr1_2:65060087-65060106 | None:intergenic | 25.0% |
! | AAATGGAAAAGTGATTATTG+TGG | + | chr1_2:65060086-65060105 | Msa0085110:CDS | 25.0% |
AATAACCTCTACTTTCATCA+GGG | - | chr1_2:65059051-65059070 | None:intergenic | 30.0% | |
AAATAACCTCTACTTTCATC+AGG | - | chr1_2:65059052-65059071 | None:intergenic | 30.0% | |
TGATGAAAGTAGAGGTTATT+TGG | + | chr1_2:65059051-65059070 | Msa0085110:CDS | 30.0% | |
ATCCTGCATTATTACAAGTT+TGG | + | chr1_2:65059098-65059117 | Msa0085110:CDS | 30.0% | |
TACCAAACTTGTAATAATGC+AGG | - | chr1_2:65059103-65059122 | None:intergenic | 30.0% | |
TTCACCTATTAAACATATGG+AGG | + | chr1_2:65059198-65059217 | Msa0085110:intron | 30.0% | |
ACTAAAGCTTAGACCATAAT+TGG | - | chr1_2:65059344-65059363 | None:intergenic | 30.0% | |
! | TCTATCCAGGATGAATTTTA+AGG | + | chr1_2:65059365-65059384 | Msa0085110:intron | 30.0% |
AGTGACAAAGTATGAATTCA+TGG | + | chr1_2:65059434-65059453 | Msa0085110:CDS | 30.0% | |
GTGACAAAGTATGAATTCAT+GGG | + | chr1_2:65059435-65059454 | Msa0085110:CDS | 30.0% | |
AAAGTATGAATTCATGGGAA+AGG | + | chr1_2:65059440-65059459 | Msa0085110:CDS | 30.0% | |
AGAATGCTTGAAATATACAC+TGG | + | chr1_2:65059525-65059544 | Msa0085110:CDS | 30.0% | |
TGAAATATACACTGGATTTG+AGG | + | chr1_2:65059533-65059552 | Msa0085110:CDS | 30.0% | |
GAAATATACACTGGATTTGA+GGG | + | chr1_2:65059534-65059553 | Msa0085110:CDS | 30.0% | |
! | TGGTGCATTTTCAATAACTT+GGG | - | chr1_2:65059658-65059677 | None:intergenic | 30.0% |
TATCATGTTATACCTGAAAG+TGG | - | chr1_2:65059681-65059700 | None:intergenic | 30.0% | |
! | TATACCACCAACTTTTGTTA+AGG | + | chr1_2:65059792-65059811 | Msa0085110:intron | 30.0% |
! | ATACCACCAACTTTTGTTAA+GGG | + | chr1_2:65059793-65059812 | Msa0085110:intron | 30.0% |
TATACTTACCTTCAGTATCA+TGG | - | chr1_2:65059868-65059887 | None:intergenic | 30.0% | |
TTAGATTCTTCACTTGTGTT+TGG | - | chr1_2:65060132-65060151 | None:intergenic | 30.0% | |
AATCTCATGTTTATCACAGT+TGG | + | chr1_2:65060171-65060190 | Msa0085110:CDS | 30.0% | |
AATAACCTCTACTTTCATCA+GGG | - | chr1_2:65059051-65059070 | None:intergenic | 30.0% | |
AAATAACCTCTACTTTCATC+AGG | - | chr1_2:65059052-65059071 | None:intergenic | 30.0% | |
TGATGAAAGTAGAGGTTATT+TGG | + | chr1_2:65059051-65059070 | Msa0085110:CDS | 30.0% | |
ATCCTGCATTATTACAAGTT+TGG | + | chr1_2:65059098-65059117 | Msa0085110:CDS | 30.0% | |
TACCAAACTTGTAATAATGC+AGG | - | chr1_2:65059103-65059122 | None:intergenic | 30.0% | |
TTCACCTATTAAACATATGG+AGG | + | chr1_2:65059198-65059217 | Msa0085110:intron | 30.0% | |
ACTAAAGCTTAGACCATAAT+TGG | - | chr1_2:65059344-65059363 | None:intergenic | 30.0% | |
! | TCTATCCAGGATGAATTTTA+AGG | + | chr1_2:65059365-65059384 | Msa0085110:intron | 30.0% |
AGTGACAAAGTATGAATTCA+TGG | + | chr1_2:65059434-65059453 | Msa0085110:CDS | 30.0% | |
GTGACAAAGTATGAATTCAT+GGG | + | chr1_2:65059435-65059454 | Msa0085110:CDS | 30.0% | |
AAAGTATGAATTCATGGGAA+AGG | + | chr1_2:65059440-65059459 | Msa0085110:CDS | 30.0% | |
AGAATGCTTGAAATATACAC+TGG | + | chr1_2:65059525-65059544 | Msa0085110:CDS | 30.0% | |
TGAAATATACACTGGATTTG+AGG | + | chr1_2:65059533-65059552 | Msa0085110:CDS | 30.0% | |
GAAATATACACTGGATTTGA+GGG | + | chr1_2:65059534-65059553 | Msa0085110:CDS | 30.0% | |
! | TGGTGCATTTTCAATAACTT+GGG | - | chr1_2:65059658-65059677 | None:intergenic | 30.0% |
TATCATGTTATACCTGAAAG+TGG | - | chr1_2:65059681-65059700 | None:intergenic | 30.0% | |
! | TATACCACCAACTTTTGTTA+AGG | + | chr1_2:65059792-65059811 | Msa0085110:intron | 30.0% |
! | ATACCACCAACTTTTGTTAA+GGG | + | chr1_2:65059793-65059812 | Msa0085110:intron | 30.0% |
TATACTTACCTTCAGTATCA+TGG | - | chr1_2:65059868-65059887 | None:intergenic | 30.0% | |
TTAGATTCTTCACTTGTGTT+TGG | - | chr1_2:65060132-65060151 | None:intergenic | 30.0% | |
AATCTCATGTTTATCACAGT+TGG | + | chr1_2:65060171-65060190 | Msa0085110:CDS | 30.0% | |
AAATTCCTACATTACCAAGG+AGG | + | chr1_2:65058682-65058701 | Msa0085110:CDS | 35.0% | |
ACTAATTTGGTTATCCTCCT+TGG | - | chr1_2:65058699-65058718 | None:intergenic | 35.0% | |
TGCTGGATAAACAAGATTAG+TGG | - | chr1_2:65058774-65058793 | None:intergenic | 35.0% | |
AAAATCAAGGGATAGTGACT+TGG | + | chr1_2:65059155-65059174 | Msa0085110:intron | 35.0% | |
! | CTAAGCTTTAGTTTCTATCC+AGG | + | chr1_2:65059352-65059371 | Msa0085110:intron | 35.0% |
!! | CAGGATGAATTTTAAGGAAG+CGG | + | chr1_2:65059371-65059390 | Msa0085110:intron | 35.0% |
! | TCAACATTAGTTGATGTTGG+AGG | + | chr1_2:65059561-65059580 | Msa0085110:CDS | 35.0% |
! | GGTGCATTTTCAATAACTTG+GGG | - | chr1_2:65059657-65059676 | None:intergenic | 35.0% |
! | GTGGTGCATTTTCAATAACT+TGG | - | chr1_2:65059659-65059678 | None:intergenic | 35.0% |
AATCCCTTAACAAAAGTTGG+TGG | - | chr1_2:65059799-65059818 | None:intergenic | 35.0% | |
CTCAATCCCTTAACAAAAGT+TGG | - | chr1_2:65059802-65059821 | None:intergenic | 35.0% | |
! | CACAAAGCTTTATCACCAAA+TGG | + | chr1_2:65060069-65060088 | Msa0085110:CDS | 35.0% |
AAATTCCTACATTACCAAGG+AGG | + | chr1_2:65058682-65058701 | Msa0085110:CDS | 35.0% | |
ACTAATTTGGTTATCCTCCT+TGG | - | chr1_2:65058699-65058718 | None:intergenic | 35.0% | |
TGCTGGATAAACAAGATTAG+TGG | - | chr1_2:65058774-65058793 | None:intergenic | 35.0% | |
AAAATCAAGGGATAGTGACT+TGG | + | chr1_2:65059155-65059174 | Msa0085110:intron | 35.0% | |
! | CTAAGCTTTAGTTTCTATCC+AGG | + | chr1_2:65059352-65059371 | Msa0085110:intron | 35.0% |
!! | CAGGATGAATTTTAAGGAAG+CGG | + | chr1_2:65059371-65059390 | Msa0085110:intron | 35.0% |
! | TCAACATTAGTTGATGTTGG+AGG | + | chr1_2:65059561-65059580 | Msa0085110:CDS | 35.0% |
! | GGTGCATTTTCAATAACTTG+GGG | - | chr1_2:65059657-65059676 | None:intergenic | 35.0% |
! | GTGGTGCATTTTCAATAACT+TGG | - | chr1_2:65059659-65059678 | None:intergenic | 35.0% |
AATCCCTTAACAAAAGTTGG+TGG | - | chr1_2:65059799-65059818 | None:intergenic | 35.0% | |
CTCAATCCCTTAACAAAAGT+TGG | - | chr1_2:65059802-65059821 | None:intergenic | 35.0% | |
! | CACAAAGCTTTATCACCAAA+TGG | + | chr1_2:65060069-65060088 | Msa0085110:CDS | 35.0% |
GGGAAATTCCTACATTACCA+AGG | + | chr1_2:65058679-65058698 | Msa0085110:CDS | 40.0% | |
!! | GTTATCCTCCTTGGTAATGT+AGG | - | chr1_2:65058690-65058709 | None:intergenic | 40.0% |
!! | GTTCTGAGGTAGCACTAATT+TGG | - | chr1_2:65058712-65058731 | None:intergenic | 40.0% |
! | ACTGTCTTCAGTTTGTTCTG+AGG | - | chr1_2:65058726-65058745 | None:intergenic | 40.0% |
ATAGCAGCATTTAACACTGC+TGG | - | chr1_2:65058791-65058810 | None:intergenic | 40.0% | |
CGCTTCCTTAAAATTCATCC+TGG | - | chr1_2:65059373-65059392 | None:intergenic | 40.0% | |
!! | GATGAATTTTAAGGAAGCGG+TGG | + | chr1_2:65059374-65059393 | Msa0085110:CDS | 40.0% |
! | GACTTGTTCAAGAACGTTCA+TGG | + | chr1_2:65059411-65059430 | Msa0085110:CDS | 40.0% |
! | ACATTAGTTGATGTTGGAGG+TGG | + | chr1_2:65059564-65059583 | Msa0085110:CDS | 40.0% |
CATGTTATACCTGAAAGTGG+TGG | - | chr1_2:65059678-65059697 | None:intergenic | 40.0% | |
TGTTAAGGGATTGAGCATGT+TGG | + | chr1_2:65059807-65059826 | Msa0085110:intron | 40.0% | |
TATGTTTGCAAGTGTTCCAC+AGG | + | chr1_2:65059836-65059855 | Msa0085110:CDS | 40.0% | |
ATGTTTGCAAGTGTTCCACA+GGG | + | chr1_2:65059837-65059856 | Msa0085110:CDS | 40.0% | |
TGTAGGCTGTATGCCATAAT+TGG | + | chr1_2:65060010-65060029 | Msa0085110:intron | 40.0% | |
!! | TCACTTGTGTTTGGTTCTTC+TGG | - | chr1_2:65060123-65060142 | None:intergenic | 40.0% |
CTCATGTTTATCACAGTTGG+TGG | + | chr1_2:65060174-65060193 | Msa0085110:CDS | 40.0% | |
!! | TGTTTATCACAGTTGGTGGA+AGG | + | chr1_2:65060178-65060197 | Msa0085110:CDS | 40.0% |
!! | GTTTATCACAGTTGGTGGAA+GGG | + | chr1_2:65060179-65060198 | Msa0085110:CDS | 40.0% |
GAGAAATTGAGCAAACTCTC+TGG | + | chr1_2:65060222-65060241 | Msa0085110:CDS | 40.0% | |
ACGGCAAGCAACTTGAAATT+TGG | - | chr1_2:65060253-65060272 | None:intergenic | 40.0% | |
TTTCAACAGTTTGGGAGTGA+TGG | + | chr1_2:65060275-65060294 | Msa0085110:CDS | 40.0% | |
GGGAAATTCCTACATTACCA+AGG | + | chr1_2:65058679-65058698 | Msa0085110:CDS | 40.0% | |
!! | GTTATCCTCCTTGGTAATGT+AGG | - | chr1_2:65058690-65058709 | None:intergenic | 40.0% |
!! | GTTCTGAGGTAGCACTAATT+TGG | - | chr1_2:65058712-65058731 | None:intergenic | 40.0% |
! | ACTGTCTTCAGTTTGTTCTG+AGG | - | chr1_2:65058726-65058745 | None:intergenic | 40.0% |
ATAGCAGCATTTAACACTGC+TGG | - | chr1_2:65058791-65058810 | None:intergenic | 40.0% | |
CGCTTCCTTAAAATTCATCC+TGG | - | chr1_2:65059373-65059392 | None:intergenic | 40.0% | |
!! | GATGAATTTTAAGGAAGCGG+TGG | + | chr1_2:65059374-65059393 | Msa0085110:CDS | 40.0% |
! | GACTTGTTCAAGAACGTTCA+TGG | + | chr1_2:65059411-65059430 | Msa0085110:CDS | 40.0% |
! | ACATTAGTTGATGTTGGAGG+TGG | + | chr1_2:65059564-65059583 | Msa0085110:CDS | 40.0% |
CATGTTATACCTGAAAGTGG+TGG | - | chr1_2:65059678-65059697 | None:intergenic | 40.0% | |
TGTTAAGGGATTGAGCATGT+TGG | + | chr1_2:65059807-65059826 | Msa0085110:intron | 40.0% | |
TATGTTTGCAAGTGTTCCAC+AGG | + | chr1_2:65059836-65059855 | Msa0085110:CDS | 40.0% | |
ATGTTTGCAAGTGTTCCACA+GGG | + | chr1_2:65059837-65059856 | Msa0085110:CDS | 40.0% | |
TGTAGGCTGTATGCCATAAT+TGG | + | chr1_2:65060010-65060029 | Msa0085110:intron | 40.0% | |
!! | TCACTTGTGTTTGGTTCTTC+TGG | - | chr1_2:65060123-65060142 | None:intergenic | 40.0% |
CTCATGTTTATCACAGTTGG+TGG | + | chr1_2:65060174-65060193 | Msa0085110:CDS | 40.0% | |
!! | TGTTTATCACAGTTGGTGGA+AGG | + | chr1_2:65060178-65060197 | Msa0085110:CDS | 40.0% |
!! | GTTTATCACAGTTGGTGGAA+GGG | + | chr1_2:65060179-65060198 | Msa0085110:CDS | 40.0% |
GAGAAATTGAGCAAACTCTC+TGG | + | chr1_2:65060222-65060241 | Msa0085110:CDS | 40.0% | |
ACGGCAAGCAACTTGAAATT+TGG | - | chr1_2:65060253-65060272 | None:intergenic | 40.0% | |
TTTCAACAGTTTGGGAGTGA+TGG | + | chr1_2:65060275-65060294 | Msa0085110:CDS | 40.0% | |
CAGTGCATGTCTTTCAGCAA+TGG | + | chr1_2:65058742-65058761 | Msa0085110:CDS | 45.0% | |
TTCCACTACTCGAACCATTG+AGG | + | chr1_2:65058973-65058992 | Msa0085110:CDS | 45.0% | |
ATCCTCAATGGTTCGAGTAG+TGG | - | chr1_2:65058978-65058997 | None:intergenic | 45.0% | |
ACTACTCGAACCATTGAGGA+TGG | + | chr1_2:65058977-65058996 | Msa0085110:CDS | 45.0% | |
TGAGAGTCCGTAAACTCTCT+CGG | - | chr1_2:65059008-65059027 | None:intergenic | 45.0% | |
GAGAGTTTACGGACTCTCAA+TGG | + | chr1_2:65059009-65059028 | Msa0085110:CDS | 45.0% | |
GTTTACGGACTCTCAATGGT+CGG | + | chr1_2:65059013-65059032 | Msa0085110:CDS | 45.0% | |
CTCTACTTTCATCAGGGACA+AGG | - | chr1_2:65059045-65059064 | None:intergenic | 45.0% | |
CTTGTCCCTGATGAAAGTAG+AGG | + | chr1_2:65059043-65059062 | Msa0085110:CDS | 45.0% | |
!! | GAATTTTAAGGAAGCGGTGG+TGG | + | chr1_2:65059377-65059396 | Msa0085110:CDS | 45.0% |
GAAAATGCACCACCACTTTC+AGG | + | chr1_2:65059666-65059685 | Msa0085110:CDS | 45.0% | |
TAAGGGATTGAGCATGTTGG+AGG | + | chr1_2:65059810-65059829 | Msa0085110:intron | 45.0% | |
TTGCCGTGCTTTCAACAGTT+TGG | + | chr1_2:65060266-65060285 | Msa0085110:CDS | 45.0% | |
TGCCGTGCTTTCAACAGTTT+GGG | + | chr1_2:65060267-65060286 | Msa0085110:CDS | 45.0% | |
CTCCCAAACTGTTGAAAGCA+CGG | - | chr1_2:65060272-65060291 | None:intergenic | 45.0% | |
CAGTGCATGTCTTTCAGCAA+TGG | + | chr1_2:65058742-65058761 | Msa0085110:CDS | 45.0% | |
TTCCACTACTCGAACCATTG+AGG | + | chr1_2:65058973-65058992 | Msa0085110:CDS | 45.0% | |
ATCCTCAATGGTTCGAGTAG+TGG | - | chr1_2:65058978-65058997 | None:intergenic | 45.0% | |
ACTACTCGAACCATTGAGGA+TGG | + | chr1_2:65058977-65058996 | Msa0085110:CDS | 45.0% | |
TGAGAGTCCGTAAACTCTCT+CGG | - | chr1_2:65059008-65059027 | None:intergenic | 45.0% | |
GAGAGTTTACGGACTCTCAA+TGG | + | chr1_2:65059009-65059028 | Msa0085110:CDS | 45.0% | |
GTTTACGGACTCTCAATGGT+CGG | + | chr1_2:65059013-65059032 | Msa0085110:CDS | 45.0% | |
CTCTACTTTCATCAGGGACA+AGG | - | chr1_2:65059045-65059064 | None:intergenic | 45.0% | |
CTTGTCCCTGATGAAAGTAG+AGG | + | chr1_2:65059043-65059062 | Msa0085110:CDS | 45.0% | |
!! | GAATTTTAAGGAAGCGGTGG+TGG | + | chr1_2:65059377-65059396 | Msa0085110:CDS | 45.0% |
GAAAATGCACCACCACTTTC+AGG | + | chr1_2:65059666-65059685 | Msa0085110:CDS | 45.0% | |
TAAGGGATTGAGCATGTTGG+AGG | + | chr1_2:65059810-65059829 | Msa0085110:intron | 45.0% | |
TTGCCGTGCTTTCAACAGTT+TGG | + | chr1_2:65060266-65060285 | Msa0085110:CDS | 45.0% | |
TGCCGTGCTTTCAACAGTTT+GGG | + | chr1_2:65060267-65060286 | Msa0085110:CDS | 45.0% | |
CTCCCAAACTGTTGAAAGCA+CGG | - | chr1_2:65060272-65060291 | None:intergenic | 45.0% | |
ATAGCTAAGGCAACACCACC+TGG | + | chr1_2:65058833-65058852 | Msa0085110:CDS | 50.0% | |
!! | GATGGTGACATGAAAGCACC+AGG | - | chr1_2:65058854-65058873 | None:intergenic | 50.0% |
AGCACTCGGACTTGCCTAAT+AGG | + | chr1_2:65058906-65058925 | Msa0085110:CDS | 50.0% | |
AGCATGCGGTCAAGCCTATT+AGG | - | chr1_2:65058923-65058942 | None:intergenic | 50.0% | |
TAGCAAGCAAACGCAGCATG+CGG | - | chr1_2:65058937-65058956 | None:intergenic | 50.0% | |
ACTCGAACCATTGAGGATGG+TGG | + | chr1_2:65058980-65058999 | Msa0085110:CDS | 50.0% | |
GTTGATGTTGGAGGTGGAAG+TGG | + | chr1_2:65059570-65059589 | Msa0085110:CDS | 50.0% | |
AGTATCATGGCATCACCCTG+TGG | - | chr1_2:65059855-65059874 | None:intergenic | 50.0% | |
GGGTGATGCCATGATACTGA+AGG | + | chr1_2:65059857-65059876 | Msa0085110:CDS | 50.0% | |
ATAGCTAAGGCAACACCACC+TGG | + | chr1_2:65058833-65058852 | Msa0085110:CDS | 50.0% | |
!! | GATGGTGACATGAAAGCACC+AGG | - | chr1_2:65058854-65058873 | None:intergenic | 50.0% |
AGCACTCGGACTTGCCTAAT+AGG | + | chr1_2:65058906-65058925 | Msa0085110:CDS | 50.0% | |
AGCATGCGGTCAAGCCTATT+AGG | - | chr1_2:65058923-65058942 | None:intergenic | 50.0% | |
TAGCAAGCAAACGCAGCATG+CGG | - | chr1_2:65058937-65058956 | None:intergenic | 50.0% | |
ACTCGAACCATTGAGGATGG+TGG | + | chr1_2:65058980-65058999 | Msa0085110:CDS | 50.0% | |
GTTGATGTTGGAGGTGGAAG+TGG | + | chr1_2:65059570-65059589 | Msa0085110:CDS | 50.0% | |
AGTATCATGGCATCACCCTG+TGG | - | chr1_2:65059855-65059874 | None:intergenic | 50.0% | |
GGGTGATGCCATGATACTGA+AGG | + | chr1_2:65059857-65059876 | Msa0085110:CDS | 50.0% | |
!! | GGTGACATGAAAGCACCAGG+TGG | - | chr1_2:65058851-65058870 | None:intergenic | 55.0% |
ACCAGCATCAACGCAGCACT+CGG | + | chr1_2:65058892-65058911 | Msa0085110:CDS | 55.0% | |
! | GGTGGTGCCGAGAGAGTTTA+CGG | + | chr1_2:65058998-65059017 | Msa0085110:CDS | 55.0% |
!! | GGTGACATGAAAGCACCAGG+TGG | - | chr1_2:65058851-65058870 | None:intergenic | 55.0% |
ACCAGCATCAACGCAGCACT+CGG | + | chr1_2:65058892-65058911 | Msa0085110:CDS | 55.0% | |
! | GGTGGTGCCGAGAGAGTTTA+CGG | + | chr1_2:65058998-65059017 | Msa0085110:CDS | 55.0% |
! | TCCGAGTGCTGCGTTGATGC+TGG | - | chr1_2:65058896-65058915 | None:intergenic | 60.0% |
CTCGGCACCACCATCCTCAA+TGG | - | chr1_2:65058990-65059009 | None:intergenic | 60.0% | |
! | TCCGAGTGCTGCGTTGATGC+TGG | - | chr1_2:65058896-65058915 | None:intergenic | 60.0% |
CTCGGCACCACCATCCTCAA+TGG | - | chr1_2:65058990-65059009 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_2 | gene | 65058677 | 65060311 | 65058677 | ID=Msa0085110;Name=Msa0085110 |
chr1_2 | mRNA | 65058677 | 65060311 | 65058677 | ID=Msa0085110-mRNA-1;Parent=Msa0085110;Name=Msa0085110-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|4|0|372 |
chr1_2 | exon | 65058677 | 65059119 | 65058677 | ID=Msa0085110-mRNA-1:exon:21936;Parent=Msa0085110-mRNA-1 |
chr1_2 | exon | 65059374 | 65059687 | 65059374 | ID=Msa0085110-mRNA-1:exon:21937;Parent=Msa0085110-mRNA-1 |
chr1_2 | exon | 65059814 | 65059878 | 65059814 | ID=Msa0085110-mRNA-1:exon:21938;Parent=Msa0085110-mRNA-1 |
chr1_2 | exon | 65060015 | 65060311 | 65060015 | ID=Msa0085110-mRNA-1:exon:21939;Parent=Msa0085110-mRNA-1 |
chr1_2 | CDS | 65058677 | 65059119 | 65058677 | ID=Msa0085110-mRNA-1:cds;Parent=Msa0085110-mRNA-1 |
chr1_2 | CDS | 65059374 | 65059687 | 65059374 | ID=Msa0085110-mRNA-1:cds;Parent=Msa0085110-mRNA-1 |
chr1_2 | CDS | 65059814 | 65059878 | 65059814 | ID=Msa0085110-mRNA-1:cds;Parent=Msa0085110-mRNA-1 |
chr1_2 | CDS | 65060015 | 65060311 | 65060015 | ID=Msa0085110-mRNA-1:cds;Parent=Msa0085110-mRNA-1 |
Gene Sequence |
Protein sequence |