Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046390 | sp|P93324|CHOMT_MEDSA | 100.000 | 372 | 0 | 0 | 1 | 372 | 1 | 372 | 0.0 | 771 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa0046390 | 0.854303 | 1.346464e-61 | -8.615850e-47 |
| Msa0046390 | Msa0059880 | 0.851596 | 8.007215e-61 | -8.615850e-47 |
| Msa0046390 | Msa0064990 | 0.800085 | 1.700626e-48 | -8.615850e-47 |
| Msa0046390 | Msa0080010 | 0.801939 | 7.105699e-49 | -8.615850e-47 |
| Msa0046390 | Msa0085110 | 0.979341 | 9.323992e-148 | -8.615850e-47 |
| Msa0046390 | Msa0095910 | 0.807637 | 4.585457e-50 | -8.615850e-47 |
| Msa0046390 | Msa0096860 | 0.804186 | 2.437554e-49 | -8.615850e-47 |
| Msa0046390 | Msa0107830 | 0.803300 | 3.723936e-49 | -8.615850e-47 |
| Msa0046390 | Msa0139460 | 0.812029 | 5.207252e-51 | -8.615850e-47 |
| Msa0046390 | Msa0150910 | 0.856145 | 3.921243e-62 | -8.615850e-47 |
| Msa0046390 | Msa0150920 | 0.833549 | 5.002549e-56 | -8.615850e-47 |
| Msa0046390 | Msa0154750 | 0.811056 | 8.471669e-51 | -8.615850e-47 |
| Msa0046390 | Msa0160580 | 0.809503 | 1.832205e-50 | -8.615850e-47 |
| Msa0046390 | Msa0175060 | 0.800934 | 1.141937e-48 | -8.615850e-47 |
| Msa0046390 | Msa0177540 | 0.810202 | 1.296093e-50 | -8.615850e-47 |
| Msa0046390 | Msa0177550 | 0.924777 | 4.474191e-90 | -8.615850e-47 |
| Msa0046390 | Msa0190670 | 0.810759 | 9.827194e-51 | -8.615850e-47 |
| Msa0046390 | Msa0194230 | 0.836934 | 6.994174e-57 | -8.615850e-47 |
| Msa0046390 | Msa0195190 | 0.820043 | 8.447982e-53 | -8.615850e-47 |
| Msa0046390 | Msa0197020 | 0.816055 | 6.735317e-52 | -8.615850e-47 |
| Msa0046390 | Msa0207640 | 0.831096 | 2.025800e-55 | -8.615850e-47 |
| Msa0046390 | Msa0212550 | 0.843343 | 1.485772e-58 | -8.615850e-47 |
| Msa0046390 | Msa0234120 | 0.814598 | 1.420298e-51 | -8.615850e-47 |
| Msa0046390 | Msa0245660 | 0.801843 | 7.436574e-49 | -8.615850e-47 |
| Msa0046390 | Msa0252930 | 0.822844 | 1.906270e-53 | -8.615850e-47 |
| Msa0046390 | Msa0259110 | 0.830359 | 3.070566e-55 | -8.615850e-47 |
| Msa0046390 | Msa0259300 | 0.832034 | 1.190033e-55 | -8.615850e-47 |
| Msa0046390 | Msa0274250 | 0.846055 | 2.761584e-59 | -8.615850e-47 |
| Msa0046390 | Msa0274260 | 0.842294 | 2.823483e-58 | -8.615850e-47 |
| Msa0046390 | Msa0276580 | 0.808755 | 2.650563e-50 | -8.615850e-47 |
| Msa0046390 | Msa0276780 | 0.809284 | 2.041288e-50 | -8.615850e-47 |
| Msa0046390 | Msa0278460 | 0.804007 | 2.655950e-49 | -8.615850e-47 |
| Msa0046390 | Msa0278950 | 0.837572 | 4.801594e-57 | -8.615850e-47 |
| Msa0046390 | Msa0278960 | 0.803619 | 3.197317e-49 | -8.615850e-47 |
| Msa0046390 | Msa0287630 | 0.812443 | 4.228330e-51 | -8.615850e-47 |
| Msa0046390 | Msa0287720 | 0.809877 | 1.522383e-50 | -8.615850e-47 |
| Msa0046390 | Msa0308740 | 0.824925 | 6.196532e-54 | -8.615850e-47 |
| Msa0046390 | Msa0314440 | 0.826773 | 2.257192e-54 | -8.615850e-47 |
| Msa0046390 | Msa0316600 | 0.808726 | 2.688458e-50 | -8.615850e-47 |
| Msa0046390 | Msa0318370 | 0.813952 | 1.972507e-51 | -8.615850e-47 |
| Msa0046390 | Msa0319830 | 0.804173 | 2.453448e-49 | -8.615850e-47 |
| Msa0046390 | Msa0328090 | 0.804017 | 2.643398e-49 | -8.615850e-47 |
| Msa0046390 | Msa0342130 | 0.821440 | 4.033803e-53 | -8.615850e-47 |
| Msa0046390 | Msa0342160 | 0.810715 | 1.004254e-50 | -8.615850e-47 |
| Msa0046390 | Msa0346170 | 0.844879 | 5.749336e-59 | -8.615850e-47 |
| Msa0046390 | Msa0348370 | 0.804202 | 2.419426e-49 | -8.615850e-47 |
| Msa0046390 | Msa0349910 | 0.809814 | 1.571107e-50 | -8.615850e-47 |
| Msa0046390 | Msa0366510 | 0.843495 | 1.352864e-58 | -8.615850e-47 |
| Msa0046390 | Msa0374040 | 0.835645 | 1.487022e-56 | -8.615850e-47 |
| Msa0046390 | Msa0378390 | 0.811679 | 6.204162e-51 | -8.615850e-47 |
| Msa0046390 | Msa0390200 | 0.800569 | 1.355404e-48 | -8.615850e-47 |
| Msa0046390 | Msa0396700 | 0.821066 | 4.918604e-53 | -8.615850e-47 |
| Msa0046390 | Msa0396790 | 0.801569 | 8.464069e-49 | -8.615850e-47 |
| Msa0046390 | Msa0409490 | 0.804347 | 2.256194e-49 | -8.615850e-47 |
| Msa0046390 | Msa0414480 | 0.852768 | 3.716775e-61 | -8.615850e-47 |
| Msa0046390 | Msa0418150 | 0.811974 | 5.353481e-51 | -8.615850e-47 |
| Msa0046390 | Msa0418160 | 0.820381 | 7.070162e-53 | -8.615850e-47 |
| Msa0046390 | Msa0423200 | 0.823258 | 1.526282e-53 | -8.615850e-47 |
| Msa0046390 | Msa0423220 | 0.804034 | 2.621682e-49 | -8.615850e-47 |
| Msa0046390 | Msa0427740 | 0.801143 | 1.034953e-48 | -8.615850e-47 |
| Msa0046390 | Msa0444400 | 0.817827 | 2.694206e-52 | -8.615850e-47 |
| Msa0046390 | Msa0445530 | 0.800621 | 1.322770e-48 | -8.615850e-47 |
| Msa0046390 | Msa0464300 | 0.801704 | 7.940084e-49 | -8.615850e-47 |
| Msa0046390 | Msa0464310 | 0.853587 | 2.166031e-61 | -8.615850e-47 |
| Msa0046390 | Msa0469450 | 0.818833 | 1.594979e-52 | -8.615850e-47 |
| Msa0046390 | Msa0490060 | 0.802757 | 4.822041e-49 | -8.615850e-47 |
| Msa0046390 | Msa0491800 | 0.822665 | 2.097625e-53 | -8.615850e-47 |
| Msa0046390 | Msa0491950 | 0.813339 | 2.690829e-51 | -8.615850e-47 |
| Msa0046390 | Msa0491960 | 0.800301 | 1.536552e-48 | -8.615850e-47 |
| Msa0046390 | Msa0502940 | 0.801500 | 8.742316e-49 | -8.615850e-47 |
| Msa0046390 | Msa0515130 | 0.836227 | 1.058938e-56 | -8.615850e-47 |
| Msa0046390 | Msa0515150 | 0.843929 | 1.035409e-58 | -8.615850e-47 |
| Msa0046390 | Msa0518570 | 0.801337 | 9.442229e-49 | -8.615850e-47 |
| Msa0046390 | Msa0535570 | 0.851043 | 1.147617e-60 | -8.615850e-47 |
| Msa0046390 | Msa0538440 | 0.828784 | 7.414980e-55 | -8.615850e-47 |
| Msa0046390 | Msa0538450 | 0.836956 | 6.905704e-57 | -8.615850e-47 |
| Msa0046390 | Msa0538520 | 0.842301 | 2.812027e-58 | -8.615850e-47 |
| Msa0046390 | Msa0538530 | 0.817030 | 4.072738e-52 | -8.615850e-47 |
| Msa0046390 | Msa0546760 | 0.806715 | 7.188969e-50 | -8.615850e-47 |
| Msa0046390 | Msa0549170 | 0.809821 | 1.565437e-50 | -8.615850e-47 |
| Msa0046390 | Msa0554660 | 0.818995 | 1.465212e-52 | -8.615850e-47 |
| Msa0046390 | Msa0589740 | 0.801433 | 9.026357e-49 | -8.615850e-47 |
| Msa0046390 | Msa0591490 | 0.853214 | 2.770259e-61 | -8.615850e-47 |
| Msa0046390 | Msa0594320 | 0.820849 | 5.519695e-53 | -8.615850e-47 |
| Msa0046390 | Msa0594330 | 0.834682 | 2.603019e-56 | -8.615850e-47 |
| Msa0046390 | Msa0597800 | 0.800788 | 1.222823e-48 | -8.615850e-47 |
| Msa0046390 | Msa0597820 | 0.823003 | 1.749798e-53 | -8.615850e-47 |
| Msa0046390 | Msa0604200 | 0.802890 | 4.525962e-49 | -8.615850e-47 |
| Msa0046390 | Msa0604280 | 0.804925 | 1.709223e-49 | -8.615850e-47 |
| Msa0046390 | Msa0630130 | 0.822445 | 2.359803e-53 | -8.615850e-47 |
| Msa0046390 | Msa0631700 | 0.843602 | 1.266799e-58 | -8.615850e-47 |
| Msa0046390 | Msa0634290 | 0.831025 | 2.108931e-55 | -8.615850e-47 |
| Msa0046390 | Msa0637700 | 0.803016 | 4.261895e-49 | -8.615850e-47 |
| Msa0046390 | Msa0640290 | 0.805085 | 1.582938e-49 | -8.615850e-47 |
| Msa0046390 | Msa0643840 | 0.822402 | 2.414939e-53 | -8.615850e-47 |
| Msa0046390 | Msa0668220 | 0.843018 | 1.813172e-58 | -8.615850e-47 |
| Msa0046390 | Msa0668230 | 0.812565 | 3.978010e-51 | -8.615850e-47 |
| Msa0046390 | Msa0670360 | 0.851662 | 7.671500e-61 | -8.615850e-47 |
| Msa0046390 | Msa0671490 | 0.807823 | 4.187078e-50 | -8.615850e-47 |
| Msa0046390 | Msa0671640 | 0.847743 | 9.534042e-60 | -8.615850e-47 |
| Msa0046390 | Msa0678620 | 0.810880 | 9.247905e-51 | -8.615850e-47 |
| Msa0046390 | Msa0685080 | 0.804730 | 1.877820e-49 | -8.615850e-47 |
| Msa0046390 | Msa0708680 | 0.804723 | 1.884216e-49 | -8.615850e-47 |
| Msa0046390 | Msa0711240 | 0.824252 | 8.924531e-54 | -8.615850e-47 |
| Msa0046390 | Msa0711250 | 0.822282 | 2.575180e-53 | -8.615850e-47 |
| Msa0046390 | Msa0711260 | 0.801818 | 7.523243e-49 | -8.615850e-47 |
| Msa0046390 | Msa0715260 | 0.802771 | 4.789487e-49 | -8.615850e-47 |
| Msa0046390 | Msa0716630 | 0.817823 | 2.699578e-52 | -8.615850e-47 |
| Msa0046390 | Msa0727480 | 0.805378 | 1.374267e-49 | -8.615850e-47 |
| Msa0046390 | Msa0728210 | 0.830118 | 3.515991e-55 | -8.615850e-47 |
| Msa0046390 | Msa0728520 | 0.811296 | 7.516801e-51 | -8.615850e-47 |
| Msa0046390 | Msa0735340 | 0.802520 | 5.395661e-49 | -8.615850e-47 |
| Msa0046390 | Msa0751960 | 0.817888 | 2.610377e-52 | -8.615850e-47 |
| Msa0046390 | Msa0757240 | 0.802781 | 4.767398e-49 | -8.615850e-47 |
| Msa0046390 | Msa0761420 | 0.803527 | 3.341154e-49 | -8.615850e-47 |
| Msa0046390 | Msa0768670 | 0.813619 | 2.335947e-51 | -8.615850e-47 |
| Msa0046390 | Msa0776540 | 0.811810 | 5.812358e-51 | -8.615850e-47 |
| Msa0046390 | Msa0777070 | 0.824986 | 5.995148e-54 | -8.615850e-47 |
| Msa0046390 | Msa0787860 | 0.827004 | 1.987574e-54 | -8.615850e-47 |
| Msa0046390 | Msa0789410 | 0.825923 | 3.596010e-54 | -8.615850e-47 |
| Msa0046390 | Msa0792330 | 0.829263 | 5.676431e-55 | -8.615850e-47 |
| Msa0046390 | Msa0798230 | 0.809238 | 2.089116e-50 | -8.615850e-47 |
| Msa0046390 | Msa0798240 | 0.814087 | 1.842147e-51 | -8.615850e-47 |
| Msa0046390 | Msa0799110 | 0.818458 | 1.939588e-52 | -8.615850e-47 |
| Msa0046390 | Msa0799120 | 0.822756 | 1.997444e-53 | -8.615850e-47 |
| Msa0046390 | Msa0806930 | 0.806417 | 8.311379e-50 | -8.615850e-47 |
| Msa0046390 | Msa0814160 | 0.853702 | 2.006976e-61 | -8.615850e-47 |
| Msa0046390 | Msa0816140 | 0.816589 | 5.114608e-52 | -8.615850e-47 |
| Msa0046390 | Msa0824850 | 0.816327 | 5.855890e-52 | -8.615850e-47 |
| Msa0046390 | Msa0824860 | 0.825184 | 5.382877e-54 | -8.615850e-47 |
| Msa0046390 | Msa0831890 | 0.806563 | 7.741046e-50 | -8.615850e-47 |
| Msa0046390 | Msa0836740 | 0.803732 | 3.028873e-49 | -8.615850e-47 |
| Msa0046390 | Msa0854840 | 0.856881 | 2.383034e-62 | -8.615850e-47 |
| Msa0046390 | Msa0861730 | 0.812541 | 4.024721e-51 | -8.615850e-47 |
| Msa0046390 | Msa0863840 | 0.831141 | 1.975467e-55 | -8.615850e-47 |
| Msa0046390 | Msa0863850 | 0.824546 | 7.614601e-54 | -8.615850e-47 |
| Msa0046390 | Msa0863860 | 0.823441 | 1.383227e-53 | -8.615850e-47 |
| Msa0046390 | Msa0864160 | 0.825149 | 5.485469e-54 | -8.615850e-47 |
| Msa0046390 | Msa0867080 | 0.802264 | 6.093464e-49 | -8.615850e-47 |
| Msa0046390 | Msa0868870 | 0.801585 | 8.399232e-49 | -8.615850e-47 |
| Msa0046390 | Msa0874750 | 0.818186 | 2.234978e-52 | -8.615850e-47 |
| Msa0046390 | Msa0883640 | 0.808991 | 2.358963e-50 | -8.615850e-47 |
| Msa0046390 | Msa0896920 | 0.842610 | 2.327695e-58 | -8.615850e-47 |
| Msa0046390 | Msa0896950 | 0.805588 | 1.241858e-49 | -8.615850e-47 |
| Msa0046390 | Msa0910830 | 0.822295 | 2.557239e-53 | -8.615850e-47 |
| Msa0046390 | Msa0932930 | 0.822721 | 2.035305e-53 | -8.615850e-47 |
| Msa0046390 | Msa0933610 | 0.804195 | 2.427296e-49 | -8.615850e-47 |
| Msa0046390 | Msa0941120 | 0.814659 | 1.376213e-51 | -8.615850e-47 |
| Msa0046390 | Msa0960090 | 0.809495 | 1.839280e-50 | -8.615850e-47 |
| Msa0046390 | Msa0967820 | 0.806460 | 8.137881e-50 | -8.615850e-47 |
| Msa0046390 | Msa0976400 | 0.809469 | 1.863502e-50 | -8.615850e-47 |
| Msa0046390 | Msa0985700 | 0.810871 | 9.290744e-51 | -8.615850e-47 |
| Msa0046390 | Msa0987640 | 0.807247 | 5.548614e-50 | -8.615850e-47 |
| Msa0046390 | Msa0996980 | 0.830020 | 3.714768e-55 | -8.615850e-47 |
| Msa0046390 | Msa1006030 | 0.835339 | 1.777677e-56 | -8.615850e-47 |
| Msa0046390 | Msa1006170 | 0.826217 | 3.063051e-54 | -8.615850e-47 |
| Msa0046390 | Msa1021620 | 0.805557 | 1.260192e-49 | -8.615850e-47 |
| Msa0046390 | Msa1022490 | 0.841822 | 3.762744e-58 | -8.615850e-47 |
| Msa0046390 | Msa1022510 | 0.841588 | 4.338306e-58 | -8.615850e-47 |
| Msa0046390 | Msa1024350 | 0.830857 | 2.319147e-55 | -8.615850e-47 |
| Msa0046390 | Msa1024420 | 0.810752 | 9.858485e-51 | -8.615850e-47 |
| Msa0046390 | Msa1035050 | 0.804831 | 1.788861e-49 | -8.615850e-47 |
| Msa0046390 | Msa1041630 | 0.801211 | 1.001891e-48 | -8.615850e-47 |
| Msa0046390 | Msa1048350 | 0.825524 | 4.472265e-54 | -8.615850e-47 |
| Msa0046390 | Msa1048390 | 0.813434 | 2.565070e-51 | -8.615850e-47 |
| Msa0046390 | Msa1049400 | 0.809544 | 1.795565e-50 | -8.615850e-47 |
| Msa0046390 | Msa1061670 | 0.858439 | 8.230384e-63 | -8.615850e-47 |
| Msa0046390 | Msa1061840 | 0.808480 | 3.034468e-50 | -8.615850e-47 |
| Msa0046390 | Msa1064940 | 0.849098 | 4.020586e-60 | -8.615850e-47 |
| Msa0046390 | Msa1075090 | 0.807500 | 4.903280e-50 | -8.615850e-47 |
| Msa0046390 | Msa1081610 | 0.807490 | 4.926763e-50 | -8.615850e-47 |
| Msa0046390 | Msa1087370 | 0.844001 | 9.907914e-59 | -8.615850e-47 |
| Msa0046390 | Msa1087380 | 0.847118 | 1.415634e-59 | -8.615850e-47 |
| Msa0046390 | Msa1100330 | 0.825153 | 5.474177e-54 | -8.615850e-47 |
| Msa0046390 | Msa1106680 | 0.829960 | 3.842102e-55 | -8.615850e-47 |
| Msa0046390 | Msa1106960 | 0.852350 | 4.891992e-61 | -8.615850e-47 |
| Msa0046390 | Msa1109890 | 0.812972 | 3.239271e-51 | -8.615850e-47 |
| Msa0046390 | Msa1110040 | 0.816308 | 5.914555e-52 | -8.615850e-47 |
| Msa0046390 | Msa1115900 | 0.804218 | 2.400882e-49 | -8.615850e-47 |
| Msa0046390 | Msa1138110 | 0.826414 | 2.748519e-54 | -8.615850e-47 |
| Msa0046390 | Msa1147030 | 0.827570 | 1.454751e-54 | -8.615850e-47 |
| Msa0046390 | Msa1148210 | 0.820962 | 5.198186e-53 | -8.615850e-47 |
| Msa0046390 | Msa1153690 | 0.849412 | 3.286994e-60 | -8.615850e-47 |
| Msa0046390 | Msa1167960 | 0.802523 | 5.387042e-49 | -8.615850e-47 |
| Msa0046390 | Msa1170340 | 0.814663 | 1.373730e-51 | -8.615850e-47 |
| Msa0046390 | Msa1173290 | 0.853670 | 2.049815e-61 | -8.615850e-47 |
| Msa0046390 | Msa1177090 | 0.837249 | 5.810550e-57 | -8.615850e-47 |
| Msa0046390 | Msa1191350 | 0.801370 | 9.298118e-49 | -8.615850e-47 |
| Msa0046390 | Msa1206380 | 0.802156 | 6.411255e-49 | -8.615850e-47 |
| Msa0046390 | Msa1208050 | 0.801002 | 1.105664e-48 | -8.615850e-47 |
| Msa0046390 | Msa1208140 | 0.806235 | 9.075529e-50 | -8.615850e-47 |
| Msa0046390 | Msa1238250 | 0.801290 | 9.654062e-49 | -8.615850e-47 |
| Msa0046390 | Msa1256730 | 0.812364 | 4.399786e-51 | -8.615850e-47 |
| Msa0046390 | Msa1267990 | 0.801515 | 8.681778e-49 | -8.615850e-47 |
| Msa0046390 | Msa1296490 | 0.821226 | 4.518946e-53 | -8.615850e-47 |
| Msa0046390 | Msa1298090 | 0.811646 | 6.308383e-51 | -8.615850e-47 |
| Msa0046390 | Msa1316960 | 0.817367 | 3.422078e-52 | -8.615850e-47 |
| Msa0046390 | Msa1319030 | 0.814037 | 1.889554e-51 | -8.615850e-47 |
| Msa0046390 | Msa1319190 | 0.806960 | 6.382272e-50 | -8.615850e-47 |
| Msa0046390 | Msa1321970 | 0.805091 | 1.577663e-49 | -8.615850e-47 |
| Msa0046390 | Msa1323030 | 0.815842 | 7.514587e-52 | -8.615850e-47 |
| Msa0046390 | Msa1323150 | 0.826407 | 2.759641e-54 | -8.615850e-47 |
| Msa0046390 | Msa1341030 | 0.981126 | 7.747344e-152 | -8.615850e-47 |
| Msa0046390 | Msa1343590 | 0.802672 | 5.019269e-49 | -8.615850e-47 |
| Msa0046390 | Msa1355340 | 0.852799 | 3.640908e-61 | -8.615850e-47 |
| Msa0046390 | Msa1357840 | 0.821623 | 3.659559e-53 | -8.615850e-47 |
| Msa0046390 | Msa1395150 | 0.803259 | 3.797361e-49 | -8.615850e-47 |
| Msa0046390 | Msa1411550 | 0.847242 | 1.308792e-59 | -8.615850e-47 |
| Msa0046390 | Msa1412360 | 0.801638 | 8.194661e-49 | -8.615850e-47 |
| Msa0046390 | Msa1419390 | 0.828146 | 1.057321e-54 | -8.615850e-47 |
| Msa0046390 | Msa1448150 | 0.802278 | 6.051446e-49 | -8.615850e-47 |
| Msa0046390 | Msa1453650 | 0.804528 | 2.068331e-49 | -8.615850e-47 |
| Msa0046390 | Msa1459610 | 0.819256 | 1.278069e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046390 | MtrunA17_Chr1g0200491 | 98.656 | 372 | 5 | 0 | 1 | 372 | 1 | 372 | 0.0 | 763 |
| Msa0046390 | MtrunA17_Chr7g0218131 | 65.684 | 373 | 124 | 3 | 1 | 372 | 1 | 370 | 0.0 | 508 |
| Msa0046390 | MtrunA17_Chr7g0218261 | 64.110 | 365 | 128 | 2 | 8 | 372 | 7 | 368 | 6.61e-173 | 486 |
| Msa0046390 | MtrunA17_Chr7g0218211 | 61.749 | 366 | 136 | 3 | 8 | 372 | 7 | 369 | 4.71e-167 | 471 |
| Msa0046390 | MtrunA17_Chr7g0218181 | 61.308 | 367 | 133 | 3 | 8 | 372 | 8 | 367 | 1.89e-165 | 467 |
| Msa0046390 | MtrunA17_Chr7g0218301 | 59.043 | 376 | 149 | 3 | 1 | 372 | 1 | 375 | 8.29e-161 | 455 |
| Msa0046390 | MtrunA17_Chr2g0307521 | 61.473 | 353 | 131 | 3 | 21 | 372 | 15 | 363 | 1.52e-160 | 454 |
| Msa0046390 | MtrunA17_Chr7g0218271 | 57.979 | 376 | 153 | 3 | 1 | 372 | 1 | 375 | 4.15e-159 | 451 |
| Msa0046390 | MtrunA17_Chr3g0085201 | 57.341 | 361 | 149 | 4 | 13 | 372 | 1 | 357 | 5.51e-144 | 412 |
| Msa0046390 | MtrunA17_Chr3g0085211 | 56.657 | 353 | 148 | 4 | 21 | 372 | 22 | 370 | 5.78e-140 | 402 |
| Msa0046390 | MtrunA17_Chr1g0163601 | 52.973 | 370 | 166 | 6 | 7 | 372 | 5 | 370 | 4.20e-135 | 390 |
| Msa0046390 | MtrunA17_Chr1g0163611 | 51.630 | 368 | 171 | 5 | 9 | 372 | 6 | 370 | 5.22e-134 | 387 |
| Msa0046390 | MtrunA17_Chr1g0163621 | 51.475 | 373 | 166 | 6 | 12 | 372 | 15 | 384 | 1.96e-128 | 374 |
| Msa0046390 | MtrunA17_Chr3g0128011 | 48.901 | 364 | 179 | 6 | 10 | 372 | 60 | 417 | 1.10e-118 | 350 |
| Msa0046390 | MtrunA17_Chr5g0448091 | 44.633 | 354 | 191 | 5 | 20 | 372 | 14 | 363 | 1.15e-101 | 305 |
| Msa0046390 | MtrunA17_Chr7g0276401 | 42.623 | 366 | 203 | 6 | 8 | 372 | 16 | 375 | 2.40e-91 | 279 |
| Msa0046390 | MtrunA17_Chr8g0367441 | 40.720 | 361 | 201 | 8 | 18 | 372 | 24 | 377 | 8.68e-86 | 265 |
| Msa0046390 | MtrunA17_Chr7g0276411 | 38.965 | 367 | 209 | 8 | 13 | 372 | 4 | 362 | 2.06e-84 | 260 |
| Msa0046390 | MtrunA17_Chr8g0367451 | 39.833 | 359 | 207 | 7 | 18 | 372 | 23 | 376 | 3.76e-83 | 258 |
| Msa0046390 | MtrunA17_Chr8g0367491 | 39.429 | 350 | 204 | 6 | 26 | 372 | 32 | 376 | 3.50e-81 | 253 |
| Msa0046390 | MtrunA17_Chr8g0367501 | 39.237 | 367 | 214 | 7 | 11 | 372 | 3 | 365 | 5.92e-77 | 243 |
| Msa0046390 | MtrunA17_Chr8g0367381 | 39.571 | 326 | 170 | 7 | 18 | 339 | 24 | 326 | 2.71e-71 | 226 |
| Msa0046390 | MtrunA17_Chr8g0345851 | 44.106 | 263 | 144 | 3 | 111 | 372 | 30 | 290 | 1.56e-69 | 220 |
| Msa0046390 | MtrunA17_Chr3g0130011 | 36.800 | 375 | 208 | 11 | 9 | 372 | 2 | 358 | 7.53e-64 | 207 |
| Msa0046390 | MtrunA17_Chr2g0314271 | 34.195 | 348 | 216 | 5 | 13 | 356 | 1 | 339 | 4.20e-63 | 205 |
| Msa0046390 | MtrunA17_Chr3g0130061 | 35.121 | 373 | 217 | 10 | 9 | 372 | 2 | 358 | 1.02e-59 | 197 |
| Msa0046390 | MtrunA17_Chr4g0022021 | 35.168 | 327 | 186 | 12 | 41 | 357 | 44 | 354 | 7.77e-51 | 174 |
| Msa0046390 | MtrunA17_Chr4g0021981 | 34.985 | 323 | 192 | 8 | 41 | 357 | 44 | 354 | 2.43e-50 | 172 |
| Msa0046390 | MtrunA17_Chr3g0121301 | 31.579 | 323 | 204 | 7 | 39 | 357 | 38 | 347 | 5.10e-48 | 166 |
| Msa0046390 | MtrunA17_Chr5g0432251 | 28.012 | 332 | 221 | 7 | 34 | 358 | 26 | 346 | 1.40e-46 | 162 |
| Msa0046390 | MtrunA17_Chr6g0482291 | 42.938 | 177 | 91 | 3 | 197 | 372 | 9 | 176 | 5.94e-46 | 155 |
| Msa0046390 | MtrunA17_Chr5g0432301 | 30.422 | 332 | 213 | 7 | 34 | 358 | 27 | 347 | 1.45e-45 | 160 |
| Msa0046390 | MtrunA17_Chr7g0219141 | 29.907 | 321 | 213 | 5 | 41 | 358 | 33 | 344 | 6.73e-44 | 155 |
| Msa0046390 | MtrunA17_Chr7g0219161 | 29.283 | 321 | 215 | 6 | 41 | 358 | 33 | 344 | 6.78e-44 | 155 |
| Msa0046390 | MtrunA17_Chr5g0432241 | 29.518 | 332 | 216 | 8 | 34 | 358 | 27 | 347 | 5.37e-43 | 153 |
| Msa0046390 | MtrunA17_Chr1g0188391 | 29.938 | 324 | 211 | 7 | 41 | 357 | 33 | 347 | 7.31e-42 | 150 |
| Msa0046390 | MtrunA17_Chr1g0188371 | 29.653 | 317 | 204 | 8 | 38 | 346 | 30 | 335 | 1.40e-41 | 149 |
| Msa0046390 | MtrunA17_Chr5g0432211 | 29.565 | 345 | 210 | 10 | 34 | 371 | 26 | 344 | 1.78e-41 | 148 |
| Msa0046390 | MtrunA17_Chr4g0014561 | 30.618 | 356 | 229 | 8 | 13 | 357 | 1 | 349 | 1.18e-40 | 147 |
| Msa0046390 | MtrunA17_Chr4g0046531 | 29.630 | 324 | 213 | 5 | 38 | 357 | 30 | 342 | 2.08e-40 | 151 |
| Msa0046390 | MtrunA17_Chr4g0046531 | 29.412 | 340 | 220 | 8 | 38 | 371 | 392 | 717 | 3.24e-38 | 145 |
| Msa0046390 | MtrunA17_Chr4g0014681 | 30.618 | 356 | 229 | 8 | 13 | 357 | 1 | 349 | 2.09e-40 | 146 |
| Msa0046390 | MtrunA17_Chr7g0223231 | 29.878 | 328 | 202 | 8 | 38 | 357 | 29 | 336 | 3.53e-40 | 145 |
| Msa0046390 | MtrunA17_Chr7g0223241 | 29.518 | 332 | 206 | 8 | 34 | 357 | 25 | 336 | 1.01e-39 | 144 |
| Msa0046390 | MtrunA17_Chr4g0046361 | 31.765 | 340 | 215 | 9 | 34 | 365 | 26 | 356 | 4.12e-39 | 142 |
| Msa0046390 | MtrunA17_Chr4g0014641 | 30.982 | 326 | 211 | 7 | 40 | 358 | 32 | 350 | 3.48e-38 | 140 |
| Msa0046390 | MtrunA17_Chr4g0040621 | 28.732 | 355 | 222 | 12 | 19 | 358 | 18 | 356 | 3.50e-38 | 140 |
| Msa0046390 | MtrunA17_Chr8g0367401 | 52.727 | 110 | 52 | 0 | 166 | 275 | 2 | 111 | 7.80e-37 | 130 |
| Msa0046390 | MtrunA17_Chr5g0432261 | 27.463 | 335 | 191 | 9 | 34 | 358 | 22 | 314 | 3.18e-34 | 129 |
| Msa0046390 | MtrunA17_Chr4g0046341 | 31.686 | 344 | 213 | 9 | 34 | 365 | 26 | 359 | 2.96e-33 | 127 |
| Msa0046390 | MtrunA17_Chr4g0014661 | 30.484 | 351 | 222 | 8 | 17 | 357 | 5 | 343 | 7.13e-31 | 120 |
| Msa0046390 | MtrunA17_Chr4g0014591 | 30.199 | 351 | 223 | 8 | 17 | 357 | 5 | 343 | 2.72e-29 | 116 |
| Msa0046390 | MtrunA17_Chr1g0170941 | 67.105 | 76 | 25 | 0 | 197 | 272 | 1 | 76 | 3.09e-29 | 108 |
| Msa0046390 | MtrunA17_Chr1g0170931 | 49.138 | 116 | 55 | 2 | 26 | 139 | 6 | 119 | 1.51e-27 | 105 |
| Msa0046390 | MtrunA17_Chr8g0367461 | 41.593 | 113 | 64 | 2 | 261 | 372 | 1 | 112 | 3.84e-25 | 98.6 |
| Msa0046390 | MtrunA17_Chr8g0367421 | 41.818 | 110 | 47 | 1 | 166 | 275 | 2 | 94 | 4.93e-24 | 95.9 |
| Msa0046390 | MtrunA17_Chr4g0014601 | 30.224 | 268 | 167 | 8 | 17 | 277 | 5 | 259 | 2.11e-23 | 98.2 |
| Msa0046390 | MtrunA17_Chr7g0219171 | 33.333 | 120 | 76 | 2 | 242 | 358 | 117 | 235 | 4.83e-21 | 91.3 |
| Msa0046390 | MtrunA17_Chr6g0476581 | 55.682 | 88 | 32 | 3 | 8 | 93 | 8 | 90 | 1.54e-19 | 83.2 |
| Msa0046390 | MtrunA17_Chr1g0170951 | 47.945 | 73 | 38 | 0 | 283 | 355 | 17 | 89 | 1.79e-18 | 80.1 |
| Msa0046390 | MtrunA17_Chr8g0367391 | 35.772 | 123 | 72 | 3 | 251 | 372 | 18 | 134 | 2.91e-17 | 77.8 |
| Msa0046390 | MtrunA17_Chr8g0367471 | 51.471 | 68 | 33 | 0 | 189 | 256 | 1 | 68 | 1.03e-15 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046390 | AT5G54160.1 | 48.837 | 344 | 169 | 4 | 20 | 362 | 15 | 352 | 2.06e-113 | 335 |
| Msa0046390 | AT1G51990.2 | 39.945 | 363 | 209 | 6 | 12 | 371 | 5 | 361 | 2.39e-91 | 278 |
| Msa0046390 | AT1G51990.1 | 39.945 | 363 | 209 | 6 | 12 | 371 | 5 | 361 | 1.17e-90 | 277 |
| Msa0046390 | AT1G77520.1 | 40.160 | 376 | 205 | 9 | 6 | 372 | 17 | 381 | 1.66e-87 | 269 |
| Msa0046390 | AT1G33030.1 | 40.286 | 350 | 195 | 8 | 28 | 372 | 10 | 350 | 6.64e-80 | 249 |
| Msa0046390 | AT1G63140.2 | 38.564 | 376 | 217 | 8 | 6 | 372 | 11 | 381 | 7.15e-79 | 247 |
| Msa0046390 | AT1G63140.4 | 39.612 | 361 | 204 | 8 | 21 | 372 | 46 | 401 | 1.01e-78 | 248 |
| Msa0046390 | AT1G21130.1 | 40.510 | 353 | 198 | 9 | 26 | 372 | 27 | 373 | 3.02e-77 | 243 |
| Msa0046390 | AT1G77530.1 | 40.107 | 374 | 208 | 8 | 6 | 372 | 17 | 381 | 1.75e-75 | 238 |
| Msa0046390 | AT1G21110.1 | 40.227 | 353 | 199 | 9 | 26 | 372 | 27 | 373 | 2.31e-75 | 238 |
| Msa0046390 | AT1G21100.1 | 40.510 | 353 | 198 | 9 | 26 | 372 | 27 | 373 | 2.41e-75 | 238 |
| Msa0046390 | AT1G21120.1 | 39.943 | 353 | 200 | 9 | 26 | 372 | 27 | 373 | 1.64e-74 | 236 |
| Msa0046390 | AT1G21120.2 | 39.660 | 353 | 201 | 9 | 26 | 372 | 75 | 421 | 5.92e-74 | 236 |
| Msa0046390 | AT5G53810.1 | 39.181 | 342 | 199 | 6 | 38 | 372 | 39 | 378 | 2.65e-72 | 230 |
| Msa0046390 | AT1G76790.1 | 37.815 | 357 | 204 | 8 | 26 | 372 | 17 | 365 | 9.06e-67 | 216 |
| Msa0046390 | AT3G53140.1 | 35.530 | 349 | 207 | 7 | 17 | 356 | 5 | 344 | 1.92e-62 | 204 |
| Msa0046390 | AT5G37170.1 | 37.730 | 326 | 160 | 9 | 56 | 372 | 43 | 334 | 1.46e-60 | 198 |
| Msa0046390 | AT1G62900.1 | 45.320 | 203 | 108 | 3 | 172 | 372 | 4 | 205 | 1.65e-55 | 181 |
| Msa0046390 | AT1G33030.3 | 40.079 | 252 | 143 | 5 | 28 | 277 | 10 | 255 | 1.29e-53 | 179 |
| Msa0046390 | AT1G33030.2 | 40.161 | 249 | 141 | 5 | 28 | 274 | 10 | 252 | 1.26e-52 | 176 |
| Msa0046390 | AT5G37170.2 | 44.444 | 198 | 106 | 4 | 178 | 372 | 38 | 234 | 3.06e-51 | 171 |
| Msa0046390 | AT1G63140.1 | 38.697 | 261 | 149 | 5 | 21 | 274 | 46 | 302 | 1.70e-49 | 169 |
| Msa0046390 | AT1G21130.2 | 43.083 | 253 | 135 | 6 | 26 | 274 | 27 | 274 | 3.18e-49 | 168 |
| Msa0046390 | AT5G37170.3 | 44.920 | 187 | 99 | 4 | 189 | 372 | 1 | 186 | 2.29e-48 | 162 |
| Msa0046390 | AT4G35150.1 | 38.073 | 218 | 115 | 7 | 162 | 365 | 105 | 316 | 7.59e-43 | 152 |
| Msa0046390 | AT4G35160.1 | 31.522 | 368 | 217 | 12 | 9 | 357 | 16 | 367 | 1.58e-42 | 152 |
| Msa0046390 | AT1G63140.3 | 37.288 | 236 | 137 | 5 | 21 | 249 | 46 | 277 | 3.88e-38 | 138 |
| Msa0046390 | AT1G77530.2 | 37.751 | 249 | 142 | 5 | 6 | 249 | 17 | 257 | 1.20e-37 | 137 |
Find 75 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCTTTATTAATGGATATT+TGG | 0.122440 | 1_1:-78545080 | None:intergenic |
| AAGTTAATTCCCTTTATTAA+TGG | 0.172707 | 1_1:-78545088 | None:intergenic |
| TCACTTGTGTTTGGTTCTTC+TGG | 0.194077 | 1_1:-78545584 | None:intergenic |
| TGATGAAAGTAGAGGTTATT+TGG | 0.221768 | 1_1:+78544515 | Msa0046390:CDS |
| GAAAATGCACCACCACTTTC+AGG | 0.245970 | 1_1:+78545130 | Msa0046390:CDS |
| ACGGCAAGCAACTTGAAATT+TGG | 0.263471 | 1_1:-78545714 | None:intergenic |
| ATCCAAATATCCATTAATAA+AGG | 0.266045 | 1_1:+78545078 | Msa0046390:CDS |
| ATCCTGCATTATTACAAGTT+TGG | 0.305992 | 1_1:+78544562 | Msa0046390:CDS |
| TGCCGTGCTTTCAACAGTTT+GGG | 0.308799 | 1_1:+78545731 | Msa0046390:CDS |
| TTGCCGTGCTTTCAACAGTT+TGG | 0.318040 | 1_1:+78545730 | Msa0046390:CDS |
| TTAGATTCTTCACTTGTGTT+TGG | 0.326373 | 1_1:-78545593 | None:intergenic |
| GACTTGTTCAAGAACGTTCA+TGG | 0.340035 | 1_1:+78544875 | Msa0046390:CDS |
| TGTAGGCTGTATGCCATAAT+TGG | 0.348746 | 1_1:+78545474 | Msa0046390:intron |
| GTTCTGAGGTAGCACTAATT+TGG | 0.352301 | 1_1:-78544173 | None:intergenic |
| GGTGGTGCCGAGAGAGTTTA+CGG | 0.386591 | 1_1:+78544462 | Msa0046390:CDS |
| AGCACTCGGACTTGCCTAAT+AGG | 0.390804 | 1_1:+78544370 | Msa0046390:CDS |
| AGTGACAAAGTATGAATTCA+TGG | 0.400109 | 1_1:+78544898 | Msa0046390:CDS |
| GTTATCCTCCTTGGTAATGT+AGG | 0.401834 | 1_1:-78544151 | None:intergenic |
| ACTAATTTGGTTATCCTCCT+TGG | 0.402910 | 1_1:-78544160 | None:intergenic |
| TCCAAATATCCATTAATAAA+GGG | 0.404369 | 1_1:+78545079 | Msa0046390:CDS |
| TATACTTACCTTCAGTATCA+TGG | 0.410761 | 1_1:-78545329 | None:intergenic |
| AGCATGCGGTCAAGCCTATT+AGG | 0.413248 | 1_1:-78544384 | None:intergenic |
| TGAAATATACACTGGATTTG+AGG | 0.429712 | 1_1:+78544997 | Msa0046390:CDS |
| CACAAAGCTTTATCACCAAA+TGG | 0.430052 | 1_1:+78545533 | Msa0046390:CDS |
| AAATAACCTCTACTTTCATC+AGG | 0.441916 | 1_1:-78544513 | None:intergenic |
| GAGAAATTGAGCAAACTCTC+TGG | 0.445194 | 1_1:+78545686 | Msa0046390:CDS |
| GAAATATACACTGGATTTGA+GGG | 0.446533 | 1_1:+78544998 | Msa0046390:CDS |
| GTTGATGTTGGAGGTGGAAG+TGG | 0.451719 | 1_1:+78545034 | Msa0046390:CDS |
| ATAGCAGCATTTAACACTGC+TGG | 0.468445 | 1_1:-78544252 | None:intergenic |
| CTCATGTTTATCACAGTTGG+TGG | 0.480360 | 1_1:+78545638 | Msa0046390:CDS |
| TATGTTTGCAAGTGTTCCAC+AGG | 0.500462 | 1_1:+78545300 | Msa0046390:CDS |
| ATATCAACATTAGTTGATGT+TGG | 0.501358 | 1_1:+78545022 | Msa0046390:CDS |
| ACATTAGTTGATGTTGGAGG+TGG | 0.504612 | 1_1:+78545028 | Msa0046390:CDS |
| GAGAGTTTACGGACTCTCAA+TGG | 0.504711 | 1_1:+78544473 | Msa0046390:CDS |
| TAAGGGATTGAGCATGTTGG+AGG | 0.505746 | 1_1:+78545274 | Msa0046390:intron |
| AATCTCATGTTTATCACAGT+TGG | 0.506086 | 1_1:+78545635 | Msa0046390:CDS |
| CTCGGCACCACCATCCTCAA+TGG | 0.508530 | 1_1:-78544451 | None:intergenic |
| TGCTGGATAAACAAGATTAG+TGG | 0.509486 | 1_1:-78544235 | None:intergenic |
| TTTATTTGAGATCATAGCTA+AGG | 0.511778 | 1_1:+78544284 | Msa0046390:CDS |
| TTTCAACAGTTTGGGAGTGA+TGG | 0.524643 | 1_1:+78545739 | Msa0046390:CDS |
| ATCCTCAATGGTTCGAGTAG+TGG | 0.527799 | 1_1:-78544439 | None:intergenic |
| TGTTTATCACAGTTGGTGGA+AGG | 0.529690 | 1_1:+78545642 | Msa0046390:CDS |
| TCCGAGTGCTGCGTTGATGC+TGG | 0.530284 | 1_1:-78544357 | None:intergenic |
| TACCAAACTTGTAATAATGC+AGG | 0.531997 | 1_1:-78544564 | None:intergenic |
| GTTTATCACAGTTGGTGGAA+GGG | 0.544261 | 1_1:+78545643 | Msa0046390:CDS |
| AAAGTATGAATTCATGGGAA+AGG | 0.556043 | 1_1:+78544904 | Msa0046390:CDS |
| ACCAGCATCAACGCAGCACT+CGG | 0.557596 | 1_1:+78544356 | Msa0046390:CDS |
| TTCCACTACTCGAACCATTG+AGG | 0.558053 | 1_1:+78544437 | Msa0046390:CDS |
| TATCATGTTATACCTGAAAG+TGG | 0.563244 | 1_1:-78545142 | None:intergenic |
| GTGACAAAGTATGAATTCAT+GGG | 0.563593 | 1_1:+78544899 | Msa0046390:CDS |
| ATAGCTAAGGCAACACCACC+TGG | 0.567142 | 1_1:+78544297 | Msa0046390:CDS |
| TCAACATTAGTTGATGTTGG+AGG | 0.568137 | 1_1:+78545025 | Msa0046390:CDS |
| CTCCCAAACTGTTGAAAGCA+CGG | 0.568203 | 1_1:-78545733 | None:intergenic |
| AATTTAGAAGCAATTTCAGA+TGG | 0.568884 | 1_1:-78544333 | None:intergenic |
| TGAGAGTCCGTAAACTCTCT+CGG | 0.571590 | 1_1:-78544469 | None:intergenic |
| AGAATGCTTGAAATATACAC+TGG | 0.575900 | 1_1:+78544989 | Msa0046390:CDS |
| TGTTAAGGGATTGAGCATGT+TGG | 0.581677 | 1_1:+78545271 | Msa0046390:intron |
| CTCTACTTTCATCAGGGACA+AGG | 0.594593 | 1_1:-78544506 | None:intergenic |
| ACTGTCTTCAGTTTGTTCTG+AGG | 0.597743 | 1_1:-78544187 | None:intergenic |
| CAGTGCATGTCTTTCAGCAA+TGG | 0.602261 | 1_1:+78544206 | Msa0046390:CDS |
| CTTGTCCCTGATGAAAGTAG+AGG | 0.618925 | 1_1:+78544507 | Msa0046390:CDS |
| AAATGGAAAAGTGATTATTG+TGG | 0.620942 | 1_1:+78545550 | Msa0046390:CDS |
| GATGGTGACATGAAAGCACC+AGG | 0.624085 | 1_1:-78544315 | None:intergenic |
| GTTTACGGACTCTCAATGGT+CGG | 0.636343 | 1_1:+78544477 | Msa0046390:CDS |
| ACTACTCGAACCATTGAGGA+TGG | 0.639748 | 1_1:+78544441 | Msa0046390:CDS |
| TAGCAAGCAAACGCAGCATG+CGG | 0.640854 | 1_1:-78544398 | None:intergenic |
| GGGAAATTCCTACATTACCA+AGG | 0.642464 | 1_1:+78544143 | Msa0046390:CDS |
| AATAACCTCTACTTTCATCA+GGG | 0.648899 | 1_1:-78544512 | None:intergenic |
| GGGTGATGCCATGATACTGA+AGG | 0.650842 | 1_1:+78545321 | Msa0046390:CDS |
| ACTCGAACCATTGAGGATGG+TGG | 0.675966 | 1_1:+78544444 | Msa0046390:CDS |
| ATGTTTGCAAGTGTTCCACA+GGG | 0.705139 | 1_1:+78545301 | Msa0046390:CDS |
| AGTATCATGGCATCACCCTG+TGG | 0.705622 | 1_1:-78545316 | None:intergenic |
| AAATTCCTACATTACCAAGG+AGG | 0.730361 | 1_1:+78544146 | Msa0046390:CDS |
| CATGTTATACCTGAAAGTGG+TGG | 0.738842 | 1_1:-78545139 | None:intergenic |
| GGTGACATGAAAGCACCAGG+TGG | 0.810388 | 1_1:-78544312 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATACATATATAAAATCAA+GGG | + | chr1_1:78544607-78544626 | Msa0046390:intron | 15.0% |
| !! | TCATACATATATAAAATCAA+GGG | + | chr1_1:78544607-78544626 | Msa0046390:intron | 15.0% |
| !! | CTCATACATATATAAAATCA+AGG | + | chr1_1:78544606-78544625 | Msa0046390:intron | 20.0% |
| !! | ATATTCACCTATTAAACATA+TGG | + | chr1_1:78544659-78544678 | Msa0046390:intron | 20.0% |
| !!! | CCATTGATTTGTTAAAAATT+TGG | - | chr1_1:78544943-78544962 | None:intergenic | 20.0% |
| !!! | CCAAATTTTTAACAAATCAA+TGG | + | chr1_1:78544940-78544959 | Msa0046390:CDS | 20.0% |
| !! | ATCCAAATATCCATTAATAA+AGG | + | chr1_1:78545078-78545097 | Msa0046390:CDS | 20.0% |
| !! | TCCAAATATCCATTAATAAA+GGG | + | chr1_1:78545079-78545098 | Msa0046390:CDS | 20.0% |
| !! | AAGTTAATTCCCTTTATTAA+TGG | - | chr1_1:78545091-78545110 | None:intergenic | 20.0% |
| !! | AGTAAAACTTTAGTATAAGA+TGG | - | chr1_1:78545206-78545225 | None:intergenic | 20.0% |
| !! | CTCATACATATATAAAATCA+AGG | + | chr1_1:78544606-78544625 | Msa0046390:intron | 20.0% |
| !! | ATATTCACCTATTAAACATA+TGG | + | chr1_1:78544659-78544678 | Msa0046390:intron | 20.0% |
| !!! | CCATTGATTTGTTAAAAATT+TGG | - | chr1_1:78544943-78544962 | None:intergenic | 20.0% |
| !!! | CCAAATTTTTAACAAATCAA+TGG | + | chr1_1:78544940-78544959 | Msa0046390:CDS | 20.0% |
| !! | ATCCAAATATCCATTAATAA+AGG | + | chr1_1:78545078-78545097 | Msa0046390:CDS | 20.0% |
| !! | TCCAAATATCCATTAATAAA+GGG | + | chr1_1:78545079-78545098 | Msa0046390:CDS | 20.0% |
| !! | AAGTTAATTCCCTTTATTAA+TGG | - | chr1_1:78545091-78545110 | None:intergenic | 20.0% |
| !! | AGTAAAACTTTAGTATAAGA+TGG | - | chr1_1:78545206-78545225 | None:intergenic | 20.0% |
| !! | TTTATTTGAGATCATAGCTA+AGG | + | chr1_1:78544284-78544303 | Msa0046390:CDS | 25.0% |
| ! | AATTTAGAAGCAATTTCAGA+TGG | - | chr1_1:78544336-78544355 | None:intergenic | 25.0% |
| ! | ATATCCTCCATATGTTTAAT+AGG | - | chr1_1:78544669-78544688 | None:intergenic | 25.0% |
| ! | GGAGGATATATAAGTTATAA+AGG | + | chr1_1:78544680-78544699 | Msa0046390:intron | 25.0% |
| ! | TTAAGCTAATTGTAGCAATT+AGG | + | chr1_1:78544762-78544781 | Msa0046390:intron | 25.0% |
| !!! | TCTTACTTTTGTTCCAATTA+TGG | + | chr1_1:78544792-78544811 | Msa0046390:intron | 25.0% |
| !! | ATATCAACATTAGTTGATGT+TGG | + | chr1_1:78545022-78545041 | Msa0046390:CDS | 25.0% |
| !! | TCCCTTTATTAATGGATATT+TGG | - | chr1_1:78545083-78545102 | None:intergenic | 25.0% |
| !! | GACTTTGTTTACATAATTGT+AGG | + | chr1_1:78545457-78545476 | Msa0046390:intron | 25.0% |
| !! | ATTTTTCATCTGACCAATTA+TGG | - | chr1_1:78545490-78545509 | None:intergenic | 25.0% |
| !!! | ACAATAATCACTTTTCCATT+TGG | - | chr1_1:78545551-78545570 | None:intergenic | 25.0% |
| ! | AAATGGAAAAGTGATTATTG+TGG | + | chr1_1:78545550-78545569 | Msa0046390:CDS | 25.0% |
| !! | TTTATTTGAGATCATAGCTA+AGG | + | chr1_1:78544284-78544303 | Msa0046390:CDS | 25.0% |
| ! | AATTTAGAAGCAATTTCAGA+TGG | - | chr1_1:78544336-78544355 | None:intergenic | 25.0% |
| ! | ATATCCTCCATATGTTTAAT+AGG | - | chr1_1:78544669-78544688 | None:intergenic | 25.0% |
| ! | GGAGGATATATAAGTTATAA+AGG | + | chr1_1:78544680-78544699 | Msa0046390:intron | 25.0% |
| ! | TTAAGCTAATTGTAGCAATT+AGG | + | chr1_1:78544762-78544781 | Msa0046390:intron | 25.0% |
| !!! | TCTTACTTTTGTTCCAATTA+TGG | + | chr1_1:78544792-78544811 | Msa0046390:intron | 25.0% |
| !! | ATATCAACATTAGTTGATGT+TGG | + | chr1_1:78545022-78545041 | Msa0046390:CDS | 25.0% |
| !! | TCCCTTTATTAATGGATATT+TGG | - | chr1_1:78545083-78545102 | None:intergenic | 25.0% |
| !! | GACTTTGTTTACATAATTGT+AGG | + | chr1_1:78545457-78545476 | Msa0046390:intron | 25.0% |
| !! | ATTTTTCATCTGACCAATTA+TGG | - | chr1_1:78545490-78545509 | None:intergenic | 25.0% |
| !!! | ACAATAATCACTTTTCCATT+TGG | - | chr1_1:78545551-78545570 | None:intergenic | 25.0% |
| ! | AAATGGAAAAGTGATTATTG+TGG | + | chr1_1:78545550-78545569 | Msa0046390:CDS | 25.0% |
| AATAACCTCTACTTTCATCA+GGG | - | chr1_1:78544515-78544534 | None:intergenic | 30.0% | |
| AAATAACCTCTACTTTCATC+AGG | - | chr1_1:78544516-78544535 | None:intergenic | 30.0% | |
| TGATGAAAGTAGAGGTTATT+TGG | + | chr1_1:78544515-78544534 | Msa0046390:CDS | 30.0% | |
| ATCCTGCATTATTACAAGTT+TGG | + | chr1_1:78544562-78544581 | Msa0046390:CDS | 30.0% | |
| TACCAAACTTGTAATAATGC+AGG | - | chr1_1:78544567-78544586 | None:intergenic | 30.0% | |
| TTCACCTATTAAACATATGG+AGG | + | chr1_1:78544662-78544681 | Msa0046390:intron | 30.0% | |
| ACTAAAGCTTAGACCATAAT+TGG | - | chr1_1:78544808-78544827 | None:intergenic | 30.0% | |
| ! | TCTATCCAGGATGAATTTTA+AGG | + | chr1_1:78544829-78544848 | Msa0046390:intron | 30.0% |
| AGTGACAAAGTATGAATTCA+TGG | + | chr1_1:78544898-78544917 | Msa0046390:CDS | 30.0% | |
| GTGACAAAGTATGAATTCAT+GGG | + | chr1_1:78544899-78544918 | Msa0046390:CDS | 30.0% | |
| AAAGTATGAATTCATGGGAA+AGG | + | chr1_1:78544904-78544923 | Msa0046390:CDS | 30.0% | |
| AGAATGCTTGAAATATACAC+TGG | + | chr1_1:78544989-78545008 | Msa0046390:CDS | 30.0% | |
| TGAAATATACACTGGATTTG+AGG | + | chr1_1:78544997-78545016 | Msa0046390:CDS | 30.0% | |
| GAAATATACACTGGATTTGA+GGG | + | chr1_1:78544998-78545017 | Msa0046390:CDS | 30.0% | |
| ! | TGGTGCATTTTCAATAACTT+GGG | - | chr1_1:78545122-78545141 | None:intergenic | 30.0% |
| TATCATGTTATACCTGAAAG+TGG | - | chr1_1:78545145-78545164 | None:intergenic | 30.0% | |
| ! | TATACCACCAACTTTTGTTA+AGG | + | chr1_1:78545256-78545275 | Msa0046390:intron | 30.0% |
| ! | ATACCACCAACTTTTGTTAA+GGG | + | chr1_1:78545257-78545276 | Msa0046390:intron | 30.0% |
| TATACTTACCTTCAGTATCA+TGG | - | chr1_1:78545332-78545351 | None:intergenic | 30.0% | |
| TTAGATTCTTCACTTGTGTT+TGG | - | chr1_1:78545596-78545615 | None:intergenic | 30.0% | |
| AATCTCATGTTTATCACAGT+TGG | + | chr1_1:78545635-78545654 | Msa0046390:CDS | 30.0% | |
| AATAACCTCTACTTTCATCA+GGG | - | chr1_1:78544515-78544534 | None:intergenic | 30.0% | |
| AAATAACCTCTACTTTCATC+AGG | - | chr1_1:78544516-78544535 | None:intergenic | 30.0% | |
| TGATGAAAGTAGAGGTTATT+TGG | + | chr1_1:78544515-78544534 | Msa0046390:CDS | 30.0% | |
| ATCCTGCATTATTACAAGTT+TGG | + | chr1_1:78544562-78544581 | Msa0046390:CDS | 30.0% | |
| TACCAAACTTGTAATAATGC+AGG | - | chr1_1:78544567-78544586 | None:intergenic | 30.0% | |
| TTCACCTATTAAACATATGG+AGG | + | chr1_1:78544662-78544681 | Msa0046390:intron | 30.0% | |
| ACTAAAGCTTAGACCATAAT+TGG | - | chr1_1:78544808-78544827 | None:intergenic | 30.0% | |
| ! | TCTATCCAGGATGAATTTTA+AGG | + | chr1_1:78544829-78544848 | Msa0046390:intron | 30.0% |
| AGTGACAAAGTATGAATTCA+TGG | + | chr1_1:78544898-78544917 | Msa0046390:CDS | 30.0% | |
| GTGACAAAGTATGAATTCAT+GGG | + | chr1_1:78544899-78544918 | Msa0046390:CDS | 30.0% | |
| AAAGTATGAATTCATGGGAA+AGG | + | chr1_1:78544904-78544923 | Msa0046390:CDS | 30.0% | |
| AGAATGCTTGAAATATACAC+TGG | + | chr1_1:78544989-78545008 | Msa0046390:CDS | 30.0% | |
| TGAAATATACACTGGATTTG+AGG | + | chr1_1:78544997-78545016 | Msa0046390:CDS | 30.0% | |
| GAAATATACACTGGATTTGA+GGG | + | chr1_1:78544998-78545017 | Msa0046390:CDS | 30.0% | |
| ! | TGGTGCATTTTCAATAACTT+GGG | - | chr1_1:78545122-78545141 | None:intergenic | 30.0% |
| TATCATGTTATACCTGAAAG+TGG | - | chr1_1:78545145-78545164 | None:intergenic | 30.0% | |
| ! | TATACCACCAACTTTTGTTA+AGG | + | chr1_1:78545256-78545275 | Msa0046390:intron | 30.0% |
| ! | ATACCACCAACTTTTGTTAA+GGG | + | chr1_1:78545257-78545276 | Msa0046390:intron | 30.0% |
| TATACTTACCTTCAGTATCA+TGG | - | chr1_1:78545332-78545351 | None:intergenic | 30.0% | |
| TTAGATTCTTCACTTGTGTT+TGG | - | chr1_1:78545596-78545615 | None:intergenic | 30.0% | |
| AATCTCATGTTTATCACAGT+TGG | + | chr1_1:78545635-78545654 | Msa0046390:CDS | 30.0% | |
| AAATTCCTACATTACCAAGG+AGG | + | chr1_1:78544146-78544165 | Msa0046390:CDS | 35.0% | |
| ACTAATTTGGTTATCCTCCT+TGG | - | chr1_1:78544163-78544182 | None:intergenic | 35.0% | |
| TGCTGGATAAACAAGATTAG+TGG | - | chr1_1:78544238-78544257 | None:intergenic | 35.0% | |
| AAAATCAAGGGATAGTGACT+TGG | + | chr1_1:78544619-78544638 | Msa0046390:intron | 35.0% | |
| ! | CTAAGCTTTAGTTTCTATCC+AGG | + | chr1_1:78544816-78544835 | Msa0046390:intron | 35.0% |
| !! | CAGGATGAATTTTAAGGAAG+CGG | + | chr1_1:78544835-78544854 | Msa0046390:intron | 35.0% |
| ! | TCAACATTAGTTGATGTTGG+AGG | + | chr1_1:78545025-78545044 | Msa0046390:CDS | 35.0% |
| ! | GGTGCATTTTCAATAACTTG+GGG | - | chr1_1:78545121-78545140 | None:intergenic | 35.0% |
| ! | GTGGTGCATTTTCAATAACT+TGG | - | chr1_1:78545123-78545142 | None:intergenic | 35.0% |
| AATCCCTTAACAAAAGTTGG+TGG | - | chr1_1:78545263-78545282 | None:intergenic | 35.0% | |
| CTCAATCCCTTAACAAAAGT+TGG | - | chr1_1:78545266-78545285 | None:intergenic | 35.0% | |
| ! | CACAAAGCTTTATCACCAAA+TGG | + | chr1_1:78545533-78545552 | Msa0046390:CDS | 35.0% |
| AAATTCCTACATTACCAAGG+AGG | + | chr1_1:78544146-78544165 | Msa0046390:CDS | 35.0% | |
| ACTAATTTGGTTATCCTCCT+TGG | - | chr1_1:78544163-78544182 | None:intergenic | 35.0% | |
| TGCTGGATAAACAAGATTAG+TGG | - | chr1_1:78544238-78544257 | None:intergenic | 35.0% | |
| AAAATCAAGGGATAGTGACT+TGG | + | chr1_1:78544619-78544638 | Msa0046390:intron | 35.0% | |
| ! | CTAAGCTTTAGTTTCTATCC+AGG | + | chr1_1:78544816-78544835 | Msa0046390:intron | 35.0% |
| !! | CAGGATGAATTTTAAGGAAG+CGG | + | chr1_1:78544835-78544854 | Msa0046390:intron | 35.0% |
| ! | TCAACATTAGTTGATGTTGG+AGG | + | chr1_1:78545025-78545044 | Msa0046390:CDS | 35.0% |
| ! | GGTGCATTTTCAATAACTTG+GGG | - | chr1_1:78545121-78545140 | None:intergenic | 35.0% |
| ! | GTGGTGCATTTTCAATAACT+TGG | - | chr1_1:78545123-78545142 | None:intergenic | 35.0% |
| AATCCCTTAACAAAAGTTGG+TGG | - | chr1_1:78545263-78545282 | None:intergenic | 35.0% | |
| CTCAATCCCTTAACAAAAGT+TGG | - | chr1_1:78545266-78545285 | None:intergenic | 35.0% | |
| ! | CACAAAGCTTTATCACCAAA+TGG | + | chr1_1:78545533-78545552 | Msa0046390:CDS | 35.0% |
| GGGAAATTCCTACATTACCA+AGG | + | chr1_1:78544143-78544162 | Msa0046390:CDS | 40.0% | |
| !! | GTTATCCTCCTTGGTAATGT+AGG | - | chr1_1:78544154-78544173 | None:intergenic | 40.0% |
| !! | GTTCTGAGGTAGCACTAATT+TGG | - | chr1_1:78544176-78544195 | None:intergenic | 40.0% |
| ! | ACTGTCTTCAGTTTGTTCTG+AGG | - | chr1_1:78544190-78544209 | None:intergenic | 40.0% |
| ATAGCAGCATTTAACACTGC+TGG | - | chr1_1:78544255-78544274 | None:intergenic | 40.0% | |
| CGCTTCCTTAAAATTCATCC+TGG | - | chr1_1:78544837-78544856 | None:intergenic | 40.0% | |
| !! | GATGAATTTTAAGGAAGCGG+TGG | + | chr1_1:78544838-78544857 | Msa0046390:CDS | 40.0% |
| ! | GACTTGTTCAAGAACGTTCA+TGG | + | chr1_1:78544875-78544894 | Msa0046390:CDS | 40.0% |
| ! | ACATTAGTTGATGTTGGAGG+TGG | + | chr1_1:78545028-78545047 | Msa0046390:CDS | 40.0% |
| CATGTTATACCTGAAAGTGG+TGG | - | chr1_1:78545142-78545161 | None:intergenic | 40.0% | |
| TGTTAAGGGATTGAGCATGT+TGG | + | chr1_1:78545271-78545290 | Msa0046390:intron | 40.0% | |
| TATGTTTGCAAGTGTTCCAC+AGG | + | chr1_1:78545300-78545319 | Msa0046390:CDS | 40.0% | |
| ATGTTTGCAAGTGTTCCACA+GGG | + | chr1_1:78545301-78545320 | Msa0046390:CDS | 40.0% | |
| TGTAGGCTGTATGCCATAAT+TGG | + | chr1_1:78545474-78545493 | Msa0046390:intron | 40.0% | |
| !! | TCACTTGTGTTTGGTTCTTC+TGG | - | chr1_1:78545587-78545606 | None:intergenic | 40.0% |
| CTCATGTTTATCACAGTTGG+TGG | + | chr1_1:78545638-78545657 | Msa0046390:CDS | 40.0% | |
| !! | TGTTTATCACAGTTGGTGGA+AGG | + | chr1_1:78545642-78545661 | Msa0046390:CDS | 40.0% |
| !! | GTTTATCACAGTTGGTGGAA+GGG | + | chr1_1:78545643-78545662 | Msa0046390:CDS | 40.0% |
| GAGAAATTGAGCAAACTCTC+TGG | + | chr1_1:78545686-78545705 | Msa0046390:CDS | 40.0% | |
| ACGGCAAGCAACTTGAAATT+TGG | - | chr1_1:78545717-78545736 | None:intergenic | 40.0% | |
| TTTCAACAGTTTGGGAGTGA+TGG | + | chr1_1:78545739-78545758 | Msa0046390:CDS | 40.0% | |
| GGGAAATTCCTACATTACCA+AGG | + | chr1_1:78544143-78544162 | Msa0046390:CDS | 40.0% | |
| !! | GTTATCCTCCTTGGTAATGT+AGG | - | chr1_1:78544154-78544173 | None:intergenic | 40.0% |
| !! | GTTCTGAGGTAGCACTAATT+TGG | - | chr1_1:78544176-78544195 | None:intergenic | 40.0% |
| ! | ACTGTCTTCAGTTTGTTCTG+AGG | - | chr1_1:78544190-78544209 | None:intergenic | 40.0% |
| ATAGCAGCATTTAACACTGC+TGG | - | chr1_1:78544255-78544274 | None:intergenic | 40.0% | |
| CGCTTCCTTAAAATTCATCC+TGG | - | chr1_1:78544837-78544856 | None:intergenic | 40.0% | |
| !! | GATGAATTTTAAGGAAGCGG+TGG | + | chr1_1:78544838-78544857 | Msa0046390:CDS | 40.0% |
| ! | GACTTGTTCAAGAACGTTCA+TGG | + | chr1_1:78544875-78544894 | Msa0046390:CDS | 40.0% |
| ! | ACATTAGTTGATGTTGGAGG+TGG | + | chr1_1:78545028-78545047 | Msa0046390:CDS | 40.0% |
| CATGTTATACCTGAAAGTGG+TGG | - | chr1_1:78545142-78545161 | None:intergenic | 40.0% | |
| TGTTAAGGGATTGAGCATGT+TGG | + | chr1_1:78545271-78545290 | Msa0046390:intron | 40.0% | |
| TATGTTTGCAAGTGTTCCAC+AGG | + | chr1_1:78545300-78545319 | Msa0046390:CDS | 40.0% | |
| ATGTTTGCAAGTGTTCCACA+GGG | + | chr1_1:78545301-78545320 | Msa0046390:CDS | 40.0% | |
| TGTAGGCTGTATGCCATAAT+TGG | + | chr1_1:78545474-78545493 | Msa0046390:intron | 40.0% | |
| !! | TCACTTGTGTTTGGTTCTTC+TGG | - | chr1_1:78545587-78545606 | None:intergenic | 40.0% |
| CTCATGTTTATCACAGTTGG+TGG | + | chr1_1:78545638-78545657 | Msa0046390:CDS | 40.0% | |
| !! | TGTTTATCACAGTTGGTGGA+AGG | + | chr1_1:78545642-78545661 | Msa0046390:CDS | 40.0% |
| !! | GTTTATCACAGTTGGTGGAA+GGG | + | chr1_1:78545643-78545662 | Msa0046390:CDS | 40.0% |
| GAGAAATTGAGCAAACTCTC+TGG | + | chr1_1:78545686-78545705 | Msa0046390:CDS | 40.0% | |
| ACGGCAAGCAACTTGAAATT+TGG | - | chr1_1:78545717-78545736 | None:intergenic | 40.0% | |
| TTTCAACAGTTTGGGAGTGA+TGG | + | chr1_1:78545739-78545758 | Msa0046390:CDS | 40.0% | |
| CAGTGCATGTCTTTCAGCAA+TGG | + | chr1_1:78544206-78544225 | Msa0046390:CDS | 45.0% | |
| TTCCACTACTCGAACCATTG+AGG | + | chr1_1:78544437-78544456 | Msa0046390:CDS | 45.0% | |
| ATCCTCAATGGTTCGAGTAG+TGG | - | chr1_1:78544442-78544461 | None:intergenic | 45.0% | |
| ACTACTCGAACCATTGAGGA+TGG | + | chr1_1:78544441-78544460 | Msa0046390:CDS | 45.0% | |
| TGAGAGTCCGTAAACTCTCT+CGG | - | chr1_1:78544472-78544491 | None:intergenic | 45.0% | |
| GAGAGTTTACGGACTCTCAA+TGG | + | chr1_1:78544473-78544492 | Msa0046390:CDS | 45.0% | |
| GTTTACGGACTCTCAATGGT+CGG | + | chr1_1:78544477-78544496 | Msa0046390:CDS | 45.0% | |
| CTCTACTTTCATCAGGGACA+AGG | - | chr1_1:78544509-78544528 | None:intergenic | 45.0% | |
| CTTGTCCCTGATGAAAGTAG+AGG | + | chr1_1:78544507-78544526 | Msa0046390:CDS | 45.0% | |
| !! | GAATTTTAAGGAAGCGGTGG+TGG | + | chr1_1:78544841-78544860 | Msa0046390:CDS | 45.0% |
| GAAAATGCACCACCACTTTC+AGG | + | chr1_1:78545130-78545149 | Msa0046390:CDS | 45.0% | |
| TAAGGGATTGAGCATGTTGG+AGG | + | chr1_1:78545274-78545293 | Msa0046390:intron | 45.0% | |
| TTGCCGTGCTTTCAACAGTT+TGG | + | chr1_1:78545730-78545749 | Msa0046390:CDS | 45.0% | |
| TGCCGTGCTTTCAACAGTTT+GGG | + | chr1_1:78545731-78545750 | Msa0046390:CDS | 45.0% | |
| CTCCCAAACTGTTGAAAGCA+CGG | - | chr1_1:78545736-78545755 | None:intergenic | 45.0% | |
| CAGTGCATGTCTTTCAGCAA+TGG | + | chr1_1:78544206-78544225 | Msa0046390:CDS | 45.0% | |
| TTCCACTACTCGAACCATTG+AGG | + | chr1_1:78544437-78544456 | Msa0046390:CDS | 45.0% | |
| ATCCTCAATGGTTCGAGTAG+TGG | - | chr1_1:78544442-78544461 | None:intergenic | 45.0% | |
| ACTACTCGAACCATTGAGGA+TGG | + | chr1_1:78544441-78544460 | Msa0046390:CDS | 45.0% | |
| TGAGAGTCCGTAAACTCTCT+CGG | - | chr1_1:78544472-78544491 | None:intergenic | 45.0% | |
| GAGAGTTTACGGACTCTCAA+TGG | + | chr1_1:78544473-78544492 | Msa0046390:CDS | 45.0% | |
| GTTTACGGACTCTCAATGGT+CGG | + | chr1_1:78544477-78544496 | Msa0046390:CDS | 45.0% | |
| CTCTACTTTCATCAGGGACA+AGG | - | chr1_1:78544509-78544528 | None:intergenic | 45.0% | |
| CTTGTCCCTGATGAAAGTAG+AGG | + | chr1_1:78544507-78544526 | Msa0046390:CDS | 45.0% | |
| !! | GAATTTTAAGGAAGCGGTGG+TGG | + | chr1_1:78544841-78544860 | Msa0046390:CDS | 45.0% |
| GAAAATGCACCACCACTTTC+AGG | + | chr1_1:78545130-78545149 | Msa0046390:CDS | 45.0% | |
| TAAGGGATTGAGCATGTTGG+AGG | + | chr1_1:78545274-78545293 | Msa0046390:intron | 45.0% | |
| TTGCCGTGCTTTCAACAGTT+TGG | + | chr1_1:78545730-78545749 | Msa0046390:CDS | 45.0% | |
| TGCCGTGCTTTCAACAGTTT+GGG | + | chr1_1:78545731-78545750 | Msa0046390:CDS | 45.0% | |
| CTCCCAAACTGTTGAAAGCA+CGG | - | chr1_1:78545736-78545755 | None:intergenic | 45.0% | |
| ATAGCTAAGGCAACACCACC+TGG | + | chr1_1:78544297-78544316 | Msa0046390:CDS | 50.0% | |
| !! | GATGGTGACATGAAAGCACC+AGG | - | chr1_1:78544318-78544337 | None:intergenic | 50.0% |
| AGCACTCGGACTTGCCTAAT+AGG | + | chr1_1:78544370-78544389 | Msa0046390:CDS | 50.0% | |
| AGCATGCGGTCAAGCCTATT+AGG | - | chr1_1:78544387-78544406 | None:intergenic | 50.0% | |
| TAGCAAGCAAACGCAGCATG+CGG | - | chr1_1:78544401-78544420 | None:intergenic | 50.0% | |
| ACTCGAACCATTGAGGATGG+TGG | + | chr1_1:78544444-78544463 | Msa0046390:CDS | 50.0% | |
| GTTGATGTTGGAGGTGGAAG+TGG | + | chr1_1:78545034-78545053 | Msa0046390:CDS | 50.0% | |
| AGTATCATGGCATCACCCTG+TGG | - | chr1_1:78545319-78545338 | None:intergenic | 50.0% | |
| GGGTGATGCCATGATACTGA+AGG | + | chr1_1:78545321-78545340 | Msa0046390:CDS | 50.0% | |
| ATAGCTAAGGCAACACCACC+TGG | + | chr1_1:78544297-78544316 | Msa0046390:CDS | 50.0% | |
| !! | GATGGTGACATGAAAGCACC+AGG | - | chr1_1:78544318-78544337 | None:intergenic | 50.0% |
| AGCACTCGGACTTGCCTAAT+AGG | + | chr1_1:78544370-78544389 | Msa0046390:CDS | 50.0% | |
| AGCATGCGGTCAAGCCTATT+AGG | - | chr1_1:78544387-78544406 | None:intergenic | 50.0% | |
| TAGCAAGCAAACGCAGCATG+CGG | - | chr1_1:78544401-78544420 | None:intergenic | 50.0% | |
| ACTCGAACCATTGAGGATGG+TGG | + | chr1_1:78544444-78544463 | Msa0046390:CDS | 50.0% | |
| GTTGATGTTGGAGGTGGAAG+TGG | + | chr1_1:78545034-78545053 | Msa0046390:CDS | 50.0% | |
| AGTATCATGGCATCACCCTG+TGG | - | chr1_1:78545319-78545338 | None:intergenic | 50.0% | |
| GGGTGATGCCATGATACTGA+AGG | + | chr1_1:78545321-78545340 | Msa0046390:CDS | 50.0% | |
| !! | GGTGACATGAAAGCACCAGG+TGG | - | chr1_1:78544315-78544334 | None:intergenic | 55.0% |
| ACCAGCATCAACGCAGCACT+CGG | + | chr1_1:78544356-78544375 | Msa0046390:CDS | 55.0% | |
| ! | GGTGGTGCCGAGAGAGTTTA+CGG | + | chr1_1:78544462-78544481 | Msa0046390:CDS | 55.0% |
| !! | GGTGACATGAAAGCACCAGG+TGG | - | chr1_1:78544315-78544334 | None:intergenic | 55.0% |
| ACCAGCATCAACGCAGCACT+CGG | + | chr1_1:78544356-78544375 | Msa0046390:CDS | 55.0% | |
| ! | GGTGGTGCCGAGAGAGTTTA+CGG | + | chr1_1:78544462-78544481 | Msa0046390:CDS | 55.0% |
| ! | TCCGAGTGCTGCGTTGATGC+TGG | - | chr1_1:78544360-78544379 | None:intergenic | 60.0% |
| CTCGGCACCACCATCCTCAA+TGG | - | chr1_1:78544454-78544473 | None:intergenic | 60.0% | |
| ! | TCCGAGTGCTGCGTTGATGC+TGG | - | chr1_1:78544360-78544379 | None:intergenic | 60.0% |
| CTCGGCACCACCATCCTCAA+TGG | - | chr1_1:78544454-78544473 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 78544141 | 78545775 | 78544141 | ID=Msa0046390;Name=Msa0046390 |
| chr1_1 | mRNA | 78544141 | 78545775 | 78544141 | ID=Msa0046390-mRNA-1;Parent=Msa0046390;Name=Msa0046390-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|4|0|372 |
| chr1_1 | exon | 78544141 | 78544583 | 78544141 | ID=Msa0046390-mRNA-1:exon:27030;Parent=Msa0046390-mRNA-1 |
| chr1_1 | exon | 78544838 | 78545151 | 78544838 | ID=Msa0046390-mRNA-1:exon:27031;Parent=Msa0046390-mRNA-1 |
| chr1_1 | exon | 78545278 | 78545342 | 78545278 | ID=Msa0046390-mRNA-1:exon:27032;Parent=Msa0046390-mRNA-1 |
| chr1_1 | exon | 78545479 | 78545775 | 78545479 | ID=Msa0046390-mRNA-1:exon:27033;Parent=Msa0046390-mRNA-1 |
| chr1_1 | CDS | 78544141 | 78544583 | 78544141 | ID=Msa0046390-mRNA-1:cds;Parent=Msa0046390-mRNA-1 |
| chr1_1 | CDS | 78544838 | 78545151 | 78544838 | ID=Msa0046390-mRNA-1:cds;Parent=Msa0046390-mRNA-1 |
| chr1_1 | CDS | 78545278 | 78545342 | 78545278 | ID=Msa0046390-mRNA-1:cds;Parent=Msa0046390-mRNA-1 |
| chr1_1 | CDS | 78545479 | 78545775 | 78545479 | ID=Msa0046390-mRNA-1:cds;Parent=Msa0046390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
