AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0637560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0637560 MtrunA17_Chr4g0020671 96.101 436 17 0 1 436 1 436 0.0 859
Msa0637560 MtrunA17_Chr7g0273861 53.616 401 150 10 5 376 3 396 1.54e-125 370
Msa0637560 MtrunA17_Chr1g0172611 33.333 393 197 10 4 365 3 361 1.10e-44 159
Msa0637560 MtrunA17_Chr4g0045641 29.793 386 205 14 100 427 145 522 2.76e-33 131
Msa0637560 MtrunA17_Chr1g0181581 29.762 420 210 15 1 348 1 407 1.40e-31 125
Msa0637560 MtrunA17_Chr7g0263731 30.937 459 213 21 4 380 3 439 2.38e-29 119
Msa0637560 MtrunA17_Chr6g0462191 31.834 289 152 9 100 348 106 389 1.52e-27 113
Msa0637560 MtrunA17_Chr8g0346021 29.338 317 147 13 1 257 1 300 1.19e-23 103
Msa0637560 MtrunA17_Chr1g0200161 26.910 301 170 7 4 254 3 303 2.06e-23 102
Msa0637560 MtrunA17_Chr4g0025441 28.889 360 197 12 100 426 95 428 3.48e-21 95.5
Msa0637560 MtrunA17_Chr3g0126901 25.714 385 241 11 1 357 1 368 1.18e-20 94.0
Msa0637560 MtrunA17_Chr1g0204901 30.970 268 147 10 97 356 132 369 1.81e-20 93.2
Msa0637560 MtrunA17_Chr1g0146931 27.869 305 168 10 100 359 121 418 7.06e-19 88.6
Msa0637560 MtrunA17_Chr8g0389781 60.000 60 24 0 100 159 125 184 1.36e-17 84.7
Msa0637560 MtrunA17_Chr3g0135851 29.703 202 114 5 90 268 80 276 1.50e-17 84.3
Msa0637560 MtrunA17_Chr1g0203711 31.122 196 109 6 9 180 1 194 6.40e-17 82.4
Msa0637560 MtrunA17_Chr6g0472551 45.570 79 41 1 92 168 106 184 6.52e-17 82.8
Msa0637560 MtrunA17_Chr2g0283321 33.908 174 82 4 99 254 61 219 1.80e-16 79.7
Msa0637560 MtrunA17_Chr1g0166431 62.069 58 22 0 96 153 112 169 5.91e-16 79.7
Msa0637560 MtrunA17_Chr4g0057321 28.000 300 168 8 95 356 82 371 7.42e-16 79.3
Msa0637560 MtrunA17_Chr4g0060381 37.615 109 63 1 51 159 55 158 1.99e-15 78.6
Msa0637560 MtrunA17_Chr8g0340761 49.351 77 39 0 103 179 128 204 2.19e-15 77.8
Msa0637560 MtrunA17_Chr8g0371131 34.868 152 74 6 31 173 5 140 3.31e-15 72.4
Msa0637560 MtrunA17_Chr7g0273951 50.000 66 33 0 103 168 108 173 3.79e-15 76.6
Msa0637560 MtrunA17_Chr2g0330921 29.801 151 87 2 32 163 9 159 2.07e-14 74.3
Msa0637560 MtrunA17_Chr2g0316401 26.667 210 132 5 64 254 26 232 2.52e-12 67.4
Msa0637560 MtrunA17_Chr1g0156121 42.683 82 45 1 94 173 117 198 4.67e-12 68.2
Msa0637560 MtrunA17_Chr8g0342551 40.000 130 73 2 100 228 89 214 1.66e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0637560 AT5G13460.1 47.234 470 182 18 4 436 3 443 9.20e-115 343
Msa0637560 AT5G03960.3 33.766 385 216 13 4 367 3 369 8.42e-37 139
Msa0637560 AT5G03960.2 33.766 385 216 13 4 367 3 369 8.42e-37 139
Msa0637560 AT2G43680.4 31.653 357 196 12 98 426 319 655 1.13e-36 142
Msa0637560 AT2G43680.2 31.653 357 196 12 98 426 319 655 1.13e-36 142
Msa0637560 AT2G43680.3 31.653 357 196 12 98 426 319 655 1.13e-36 142
Msa0637560 AT2G43680.5 31.653 357 196 12 98 426 319 655 1.13e-36 142
Msa0637560 AT2G43680.1 31.742 356 195 12 99 426 321 656 1.19e-36 142
Msa0637560 AT3G52290.1 30.435 391 214 14 6 348 3 383 3.35e-36 138
Msa0637560 AT5G03960.1 33.506 385 216 14 4 367 3 368 1.34e-34 133
Msa0637560 AT3G59690.2 31.933 357 197 12 99 427 167 505 1.83e-34 135
Msa0637560 AT3G59690.1 31.933 357 197 12 99 427 167 505 1.83e-34 135
Msa0637560 AT5G03040.1 28.224 411 230 14 1 351 1 406 2.59e-31 125
Msa0637560 AT5G03040.3 28.224 411 230 14 1 351 1 406 2.59e-31 125
Msa0637560 AT5G03040.2 28.224 411 230 14 1 351 1 406 2.59e-31 125
Msa0637560 AT4G10640.1 29.925 401 201 17 1 356 1 366 4.05e-25 107
Msa0637560 AT1G01110.2 26.329 395 193 12 92 406 112 488 4.26e-23 102
Msa0637560 AT3G49260.1 34.286 175 94 6 103 257 122 295 5.26e-23 101
Msa0637560 AT3G49260.4 34.286 175 94 6 103 257 122 295 5.26e-23 101
Msa0637560 AT3G49260.2 34.286 175 94 6 103 257 122 295 5.26e-23 101
Msa0637560 AT3G49260.3 33.143 175 97 5 103 257 122 296 1.62e-22 100
Msa0637560 AT2G26180.1 30.183 328 182 12 60 349 47 365 1.32e-20 94.0
Msa0637560 AT4G14750.1 32.020 203 112 6 2 190 14 204 3.09e-20 92.4
Msa0637560 AT4G14750.2 31.884 207 115 6 2 194 73 267 3.94e-20 92.8
Msa0637560 AT4G14750.3 31.884 207 115 6 2 194 73 267 4.43e-20 92.8
Msa0637560 AT4G00820.1 31.148 244 125 9 39 254 74 302 6.74e-20 92.4
Msa0637560 AT1G72670.1 34.706 170 90 5 100 254 92 255 4.35e-19 89.4
Msa0637560 AT3G09710.2 26.804 388 216 12 57 380 60 443 7.52e-19 89.0
Msa0637560 AT3G09710.1 26.984 378 214 13 57 380 60 429 8.00e-19 89.0
Msa0637560 AT1G17480.1 37.121 132 69 3 100 231 93 210 7.38e-18 85.1
Msa0637560 AT3G22190.3 33.511 188 107 5 103 279 90 270 2.19e-17 84.3
Msa0637560 AT3G22190.2 33.511 188 107 5 103 279 90 270 2.19e-17 84.3
Msa0637560 AT3G22190.4 33.511 188 107 5 103 279 90 270 2.19e-17 84.3
Msa0637560 AT3G22190.1 33.511 188 107 5 103 279 90 270 2.19e-17 84.3
Msa0637560 AT4G23060.1 29.206 315 153 10 97 378 163 440 5.85e-17 83.2
Msa0637560 AT2G26410.2 28.351 194 119 4 94 273 141 328 5.60e-16 80.5
Msa0637560 AT2G26410.1 28.351 194 119 4 94 273 141 328 5.60e-16 80.5
Msa0637560 AT2G33990.1 32.927 164 100 4 101 257 47 207 7.92e-16 77.8
Msa0637560 AT3G16490.1 50.000 66 33 0 99 164 105 170 1.90e-15 78.2
Msa0637560 AT1G18840.1 41.228 114 57 4 56 164 64 172 1.94e-15 79.0
Msa0637560 AT1G18840.3 41.228 114 57 4 56 164 64 172 1.94e-15 79.0
Msa0637560 AT1G18840.2 41.228 114 57 4 56 164 64 172 1.94e-15 79.0
Msa0637560 AT4G29150.1 47.436 78 38 1 82 159 115 189 8.86e-15 76.3
Msa0637560 AT1G74690.1 46.154 91 31 2 94 169 109 196 9.44e-15 76.6
Msa0637560 AT1G51960.1 53.226 62 29 0 103 164 102 163 1.70e-14 75.1
Msa0637560 AT5G07240.1 52.542 59 28 0 103 161 108 166 2.36e-14 74.7
Msa0637560 AT5G07240.2 52.542 59 28 0 103 161 154 212 2.78e-14 75.1
Msa0637560 AT5G62070.1 55.556 54 24 0 102 155 118 171 1.58e-13 72.4
Msa0637560 AT3G49380.1 34.307 137 71 3 24 157 46 166 1.87e-13 71.6
Msa0637560 AT3G15050.1 32.609 138 88 2 101 237 50 183 6.98e-12 65.9
Msa0637560 AT3G51380.1 47.692 65 34 0 100 164 36 100 2.11e-11 60.8
Msa0637560 AT1G14380.6 49.153 59 30 0 101 159 94 152 5.31e-11 65.1
Msa0637560 AT1G14380.5 49.153 59 30 0 101 159 94 152 5.31e-11 65.1
Msa0637560 AT1G14380.2 49.153 59 30 0 101 159 94 152 5.31e-11 65.1
Msa0637560 AT1G14380.7 49.153 59 30 0 101 159 94 152 5.33e-11 65.1
Msa0637560 AT1G14380.1 46.032 63 34 0 101 163 94 156 5.44e-11 65.1
Msa0637560 AT1G14380.3 46.032 63 34 0 101 163 94 156 5.44e-11 65.1
Msa0637560 AT1G14380.4 46.032 63 34 0 101 163 94 156 5.44e-11 65.1

Find 115 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTTCCACATTCTTGATTT+TGG 0.128829 4_3:-29499469 Msa0637560:five_prime_UTR
GTTCTAAAGACAAGATAATT+AGG 0.184028 4_3:-29497194 Msa0637560:CDS
TCCAAATGGTTGAAGGAAAA+TGG 0.192772 4_3:-29497245 Msa0637560:CDS
TCTAAAATCGGTGACGAATT+TGG 0.198095 4_3:-29496499 Msa0637560:CDS
TCAAAATTCAAACTGCCTTT+AGG 0.203753 4_3:-29498440 Msa0637560:CDS
TCCAATCCTTCAACTGGATT+TGG 0.229739 4_3:+29496436 None:intergenic
CAGATAGCTCACTGCCTAAT+TGG 0.230370 4_3:-29496057 Msa0637560:CDS
CAAAATTCAAACTGCCTTTA+GGG 0.238522 4_3:-29498439 Msa0637560:CDS
TTCAATAGAATGTGTTTAGA+TGG 0.287264 4_3:-29495746 Msa0637560:three_prime_UTR
ATGTGTTTGAATGTTTATTT+TGG 0.291236 4_3:-29495905 Msa0637560:three_prime_UTR
AAAAGAAGGAAATGGATATT+TGG 0.296004 4_3:-29498669 Msa0637560:CDS
CACTAAGCTTGCCTCTATTA+AGG 0.318000 4_3:+29496167 None:intergenic
TATTCTTTCTCTCTTAATAA+TGG 0.318278 4_3:+29496977 None:intergenic
GAACTTTGTCTATCCCAATT+AGG 0.328904 4_3:+29496043 None:intergenic
TACTGATATGTTAAAATGTT+TGG 0.331383 4_3:-29496001 Msa0637560:three_prime_UTR
GAATTTCTGCCCTTTCAAAT+AGG 0.333791 4_3:-29499542 Msa0637560:five_prime_UTR
GAAATTCCTCTTTGCCTTCA+TGG 0.340724 4_3:+29499697 None:intergenic
ATCTTCAGAATCAGAATGTT+TGG 0.344137 4_3:+29498572 None:intergenic
GCCATGTATGCCGGAGTTGC+CGG 0.349143 4_3:+29496331 None:intergenic
AAAATCAAGCAGGACTATAA+AGG 0.350189 4_3:-29496095 Msa0637560:CDS
TAGTTCCAAGACCTTGCTTT+TGG 0.367342 4_3:+29496265 None:intergenic
TCCTTGCACAAATCTTTGAT+TGG 0.374460 4_3:+29497271 None:intergenic
GATCATAATTCCTTGTATCA+TGG 0.391427 4_3:-29495979 Msa0637560:three_prime_UTR
TTACTATAAAGAATGTTTGC+TGG 0.393081 4_3:-29499437 Msa0637560:five_prime_UTR
GGTGATTCCAATCCTTCAAC+TGG 0.395148 4_3:+29496430 None:intergenic
AGAAGGAGAAAAGAAGGAAA+TGG 0.396134 4_3:-29498677 Msa0637560:CDS
AAGAATGTTTGCTGGTTTCA+AGG 0.398592 4_3:-29499429 Msa0637560:five_prime_UTR
GTATCATTAGCTTCATTTGA+AGG 0.398734 4_3:+29496021 None:intergenic
AAATTCCTCTTTGCCTTCAT+GGG 0.398795 4_3:+29499698 None:intergenic
CCGGAGAGCTTGACAATGAT+TGG 0.404978 4_3:+29496350 None:intergenic
TACAGCTCACATTCTAAAAT+CGG 0.405037 4_3:-29496511 Msa0637560:CDS
TAAAACTAGGAGATCTTTGT+TGG 0.405800 4_3:+29496137 None:intergenic
AGATAGCTCACTGCCTAATT+GGG 0.412832 4_3:-29496056 Msa0637560:CDS
CCAAATGGTTGAAGGAAAAT+GGG 0.421909 4_3:-29497244 Msa0637560:CDS
TCAATAGAATGTGTTTAGAT+GGG 0.423672 4_3:-29495745 Msa0637560:three_prime_UTR
AATCAAGAATGTGGAAACTT+TGG 0.423828 4_3:+29499473 None:intergenic
TCAGAAAGAAGTAAAGTGAA+TGG 0.437880 4_3:-29496613 Msa0637560:CDS
AGGCACCGTTTGGAAGAAAT+AGG 0.438762 4_3:+29499356 None:intergenic
AAAATTCTTTAATCTCCCTC+TGG 0.440216 4_3:+29498469 None:intergenic
TTCTAAAGACAAGATAATTA+GGG 0.440984 4_3:-29497193 Msa0637560:intron
AAAAGACAAGAGGCACCGTT+TGG 0.442166 4_3:+29499346 None:intergenic
TCCAAATCCAGTTGAAGGAT+TGG 0.443208 4_3:-29496437 Msa0637560:CDS
CTTAATAGAGGCAAGCTTAG+TGG 0.449370 4_3:-29496166 Msa0637560:CDS
GAATTTCTTGAAAATAGTAT+TGG 0.453636 4_3:+29496409 None:intergenic
CAAGAATGTGGAAACTTTGG+TGG 0.455525 4_3:+29499476 None:intergenic
CATTTAGCAATATGATCAAA+AGG 0.457277 4_3:+29498867 None:intergenic
CAAAATCCAAATCCAGTTGA+AGG 0.460055 4_3:-29496442 Msa0637560:CDS
GAGGTACTGGCTGGAGCAAT+GGG 0.470588 4_3:-29496584 Msa0637560:CDS
CACAGGAGGAAGTGTTCAAT+AGG 0.472141 4_3:-29496379 Msa0637560:CDS
TCCGGCAACTCCGGCATACA+TGG 0.476116 4_3:-29496332 Msa0637560:CDS
GAAGTAAAGTGAATGGAAGA+TGG 0.476780 4_3:-29496606 Msa0637560:CDS
GAAGGCCTTGAGGGCATTGA+AGG 0.479233 4_3:-29497385 Msa0637560:CDS
AAGATTCTTTCCTATTTGAA+AGG 0.479896 4_3:+29499532 None:intergenic
TCTTCAGAGTATTCATAGCT+TGG 0.482970 4_3:+29497316 None:intergenic
ATCATAATTCCTTGTATCAT+GGG 0.489613 4_3:-29495978 Msa0637560:three_prime_UTR
AACAGTGAAGTCCTTAATAG+AGG 0.490528 4_3:-29496178 Msa0637560:CDS
AGGCATGTTCATGTGTCTGT+TGG 0.490884 4_3:+29499764 None:intergenic
GGCATGTTCATGTGTCTGTT+GGG 0.491128 4_3:+29499765 None:intergenic
TGTTCATGGACAGGCAAAGA+AGG 0.491711 4_3:-29497403 Msa0637560:intron
AAACTTCAAGCTATCATTCG+TGG 0.499142 4_3:-29497354 Msa0637560:CDS
CCAATCATTGTCAAGCTCTC+CGG 0.502381 4_3:-29496350 Msa0637560:CDS
ACAGGCAAAGAAGGCCTTGA+GGG 0.502406 4_3:-29497394 Msa0637560:intron
TTATCTTTGCTATTTCATGA+TGG 0.508588 4_3:-29499829 Msa0637560:five_prime_UTR
GGAGGTACTGGCTGGAGCAA+TGG 0.509178 4_3:-29496585 Msa0637560:CDS
ACTCACAAGGTAACCCCTAA+AGG 0.511074 4_3:+29498425 None:intergenic
GTTCACCAAAAGCAAGGTCT+TGG 0.512945 4_3:-29496270 Msa0637560:CDS
CTGCAGTCATTAACTTGAGA+TGG 0.516273 4_3:+29499398 None:intergenic
AGATTCTTTCCTATTTGAAA+GGG 0.517957 4_3:+29499533 None:intergenic
AATAGGTGCATGGGAACAAA+GGG 0.522008 4_3:+29499373 None:intergenic
GTCAAGCTCTCCGGCAACTC+CGG 0.529311 4_3:-29496341 Msa0637560:CDS
GACATGCACATTTAAATGAA+AGG 0.532027 4_3:-29499862 Msa0637560:five_prime_UTR
GAAGGAAATGGATATTTGGA+AGG 0.532923 4_3:-29498665 Msa0637560:CDS
ACTCAAACAGTCAAAGAAAG+TGG 0.539967 4_3:-29497058 Msa0637560:CDS
AGGAGACTCCAAATGGTTGA+AGG 0.541413 4_3:-29497252 Msa0637560:CDS
TGAATGGAAGATGGAGGTAC+TGG 0.544699 4_3:-29496597 Msa0637560:CDS
GGATGACAGTACATTATTGA+AGG 0.551794 4_3:-29497036 Msa0637560:CDS
TCAGTAGCAGCCATGTATGC+CGG 0.554373 4_3:+29496322 None:intergenic
TCAAGCCCTCCCATGATACA+AGG 0.554446 4_3:+29495969 None:intergenic
TTGTGCAAGGAGACTCCAAA+TGG 0.554466 4_3:-29497259 Msa0637560:CDS
TGGAAGATGGAGGTACTGGC+TGG 0.555626 4_3:-29496593 Msa0637560:CDS
ATGCACCTATTTCTTCCAAA+CGG 0.556416 4_3:-29499361 Msa0637560:five_prime_UTR
CTCAACCTATCAAAATCCAG+AGG 0.560910 4_3:-29498485 Msa0637560:CDS
GTTATATCATAGTTTAGTGA+AGG 0.565875 4_3:-29499807 Msa0637560:five_prime_UTR
AAATAGGTGCATGGGAACAA+AGG 0.566155 4_3:+29499372 None:intergenic
CAGTACATTATTGAAGGAAG+AGG 0.569837 4_3:-29497030 Msa0637560:CDS
TAATTCCTTGTATCATGGGA+GGG 0.573248 4_3:-29495974 Msa0637560:three_prime_UTR
AAAATTCAAACTGCCTTTAG+GGG 0.573375 4_3:-29498438 Msa0637560:CDS
ATTTAGCAATATGATCAAAA+GGG 0.575789 4_3:+29498868 None:intergenic
CTCACATTCTACACAAGAGA+AGG 0.576649 4_3:-29498791 Msa0637560:intron
AAAATCGGTGACGAATTTGG+AGG 0.576765 4_3:-29496496 Msa0637560:CDS
AGTCACCAAAATCAAGAATG+TGG 0.584098 4_3:+29499464 None:intergenic
TATTCCCTTCAATGCCCTCA+AGG 0.584662 4_3:+29497380 None:intergenic
GTTGGTGGAGCTGTAATTGA+AGG 0.587261 4_3:+29498624 None:intergenic
ACTGAAATACCCTTAAAACT+AGG 0.588800 4_3:+29496124 None:intergenic
CAATAGAATGTGTTTAGATG+GGG 0.589383 4_3:-29495744 Msa0637560:three_prime_UTR
GCTCATGAAGATAAATGCAT+AGG 0.590914 4_3:+29499657 None:intergenic
CTCAAACAGTCAAAGAAAGT+GGG 0.591986 4_3:-29497057 Msa0637560:CDS
AAATTGAAAAGGACCCATGA+AGG 0.594324 4_3:-29499711 Msa0637560:five_prime_UTR
CAGTGCCTATAAAATCAAGC+AGG 0.595648 4_3:-29496105 Msa0637560:CDS
TTTGGAAGAAATAGGTGCAT+GGG 0.596236 4_3:+29499364 None:intergenic
GCTGGTTTAATCTAGTGAAG+AGG 0.596678 4_3:-29498828 Msa0637560:CDS
GTTTGGAAGAAATAGGTGCA+TGG 0.599993 4_3:+29499363 None:intergenic
AACAATATCAAAAGAAACAG+AGG 0.603713 4_3:-29498604 Msa0637560:CDS
GTAAAGTGAATGGAAGATGG+AGG 0.607160 4_3:-29496603 Msa0637560:CDS
ATAATTCCTTGTATCATGGG+AGG 0.614389 4_3:-29495975 Msa0637560:three_prime_UTR
TCCAATCAAAGATTTGTGCA+AGG 0.626481 4_3:-29497272 Msa0637560:CDS
CAACAAGTTCACCAAAAGCA+AGG 0.636655 4_3:-29496276 Msa0637560:CDS
AAGGCCTTGAGGGCATTGAA+GGG 0.639367 4_3:-29497384 Msa0637560:CDS
AAGGACCCATGAAGGCAAAG+AGG 0.649590 4_3:-29499703 Msa0637560:five_prime_UTR
TCAACCTATCAAAATCCAGA+GGG 0.651212 4_3:-29498484 Msa0637560:CDS
GACAGGCAAAGAAGGCCTTG+AGG 0.658532 4_3:-29497395 Msa0637560:intron
AATATCAAAAGAAACAGAGG+AGG 0.669914 4_3:-29498601 Msa0637560:CDS
ATTGAACACTTCCTCCTGTG+AGG 0.674211 4_3:+29496382 None:intergenic
TTGAGAATTGAACATTAGTG+TGG 0.682763 4_3:-29495882 Msa0637560:three_prime_UTR
TTGAAATTGAGAATCACACA+AGG 0.722024 4_3:+29495764 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGAAAAAAAAATTGAAA+AGG - chr4_3:29495891-29495910 Msa0637560:three_prime_UTR 10.0%
!!! ATTCATATTTTTATTAACTT+TGG + chr4_3:29496299-29496318 None:intergenic 10.0%
!! CTGATTTATGTATATTTATT+TGG - chr4_3:29496441-29496460 Msa0637560:CDS 15.0%
!! ACAAAATTTGATTCTTAATT+TGG + chr4_3:29496487-29496506 None:intergenic 15.0%
!! AAATAAATTATTCAATGCTT+AGG - chr4_3:29496576-29496595 Msa0637560:CDS 15.0%
!!! ATATGATTGTTATTAGAATA+AGG - chr4_3:29497480-29497499 Msa0637560:intron 15.0%
!!! ATATGATTGTTATTAGAATA+AGG - chr4_3:29497480-29497499 Msa0637560:intron 15.0%
!! GGTGTTTAAATTAAAAATAT+AGG - chr4_3:29497501-29497520 Msa0637560:intron 15.0%
!!! AAAAAAAAAGTATCATAACT+AGG - chr4_3:29497722-29497741 Msa0637560:intron 15.0%
!! CAAAAATATATATAAGAGTT+AGG + chr4_3:29498693-29498712 None:intergenic 15.0%
!! TTATGAAAAATGAGTATAAT+AGG + chr4_3:29499817-29499836 None:intergenic 15.0%
!! CAAAAAATCTTGAATGATAT+AGG - chr4_3:29496049-29496068 Msa0637560:CDS 20.0%
!! ATATGAATAAGTGATTAACT+TGG - chr4_3:29496311-29496330 Msa0637560:CDS 20.0%
!! TAGTTGAAAAAAAAAAGATG+AGG + chr4_3:29496367-29496386 None:intergenic 20.0%
!!! CTTTTTTTTTTCAACTATCT+TGG - chr4_3:29496370-29496389 Msa0637560:CDS 20.0%
!!! AAGAATCAAATTTTGTTACA+AGG - chr4_3:29496491-29496510 Msa0637560:CDS 20.0%
!! ATTTAGCAATATGATCAAAA+GGG + chr4_3:29496748-29496767 None:intergenic 20.0%
!! AAATGAACAAAGAAAAATCT+CGG - chr4_3:29497793-29497812 Msa0637560:intron 20.0%
!! TTAGTAAGTAAAAGAAACAA+TGG - chr4_3:29498152-29498171 Msa0637560:intron 20.0%
!! TATAACTAAAGCTTATAGTA+AGG + chr4_3:29498181-29498200 None:intergenic 20.0%
!!! TTCTAAAGACAAGATAATTA+GGG - chr4_3:29498420-29498439 Msa0637560:intron 20.0%
!!! TGAATTTTCTCATTTTTAGA+TGG - chr4_3:29498532-29498551 Msa0637560:CDS 20.0%
!! TATTCTTTCTCTCTTAATAA+TGG + chr4_3:29498639-29498658 None:intergenic 20.0%
!! TTATGACAAAAGATAAAACA+AGG - chr4_3:29498811-29498830 Msa0637560:CDS 20.0%
!! GAATTTCTTGAAAATAGTAT+TGG + chr4_3:29499207-29499226 None:intergenic 20.0%
!! TACTGATATGTTAAAATGTT+TGG - chr4_3:29499612-29499631 Msa0637560:five_prime_UTR 20.0%
!!! ATGTGTTTGAATGTTTATTT+TGG - chr4_3:29499708-29499727 Msa0637560:five_prime_UTR 20.0%
!!! AGTTGATTTTTACATTGATT+AGG - chr4_3:29499766-29499785 Msa0637560:five_prime_UTR 20.0%
!!! TTATCTTTGCTATTTCATGA+TGG - chr4_3:29495784-29495803 Msa0637560:three_prime_UTR 25.0%
! GTTATATCATAGTTTAGTGA+AGG - chr4_3:29495806-29495825 Msa0637560:three_prime_UTR 25.0%
!!! TTTGTTTTTCTAAATGTAGC+AGG + chr4_3:29495872-29495891 None:intergenic 25.0%
! AGATTCTTTCCTATTTGAAA+GGG + chr4_3:29496083-29496102 None:intergenic 25.0%
! AAGATTCTTTCCTATTTGAA+AGG + chr4_3:29496084-29496103 None:intergenic 25.0%
! TTACTATAAAGAATGTTTGC+TGG - chr4_3:29496176-29496195 Msa0637560:CDS 25.0%
! TTGGTTATAAAAAAGACAAG+AGG + chr4_3:29496280-29496299 None:intergenic 25.0%
!!! AACATCAGACTTTTCTAAAA+TGG + chr4_3:29496533-29496552 None:intergenic 25.0%
! AAGCATACTCATATAGAAAA+TGG + chr4_3:29496688-29496707 None:intergenic 25.0%
! TTTCTATATGAGTATGCTTA+TGG - chr4_3:29496689-29496708 Msa0637560:intron 25.0%
! CATTTAGCAATATGATCAAA+AGG + chr4_3:29496749-29496768 None:intergenic 25.0%
!! CTTTTGATCATATTGCTAAA+TGG - chr4_3:29496747-29496766 Msa0637560:intron 25.0%
!! GAAAACCTTATATTTTCAGA+AGG - chr4_3:29496919-29496938 Msa0637560:intron 25.0%
!! TTTCTCCTTCTGAAAATATA+AGG + chr4_3:29496927-29496946 None:intergenic 25.0%
! AAAAGAAGGAAATGGATATT+TGG - chr4_3:29496944-29496963 Msa0637560:intron 25.0%
!!! TCTGTTTCTTTTGATATTGT+TGG + chr4_3:29497010-29497029 None:intergenic 25.0%
! AACAATATCAAAAGAAACAG+AGG - chr4_3:29497009-29497028 Msa0637560:CDS 25.0%
! AATGAACAAAGAAAAATCTC+GGG - chr4_3:29497794-29497813 Msa0637560:intron 25.0%
! TAGTATATTTAGAGAACATG+TGG - chr4_3:29497845-29497864 Msa0637560:intron 25.0%
! GTAAAGGAAATCTAGTAAAT+TGG + chr4_3:29497994-29498013 None:intergenic 25.0%
! ATTGAAAGAGAAAGTTGTAA+AGG - chr4_3:29498126-29498145 Msa0637560:intron 25.0%
!! TTATAGCATTTTCTTGTTCA+TGG - chr4_3:29498196-29498215 Msa0637560:intron 25.0%
!!! GTTCTAAAGACAAGATAATT+AGG - chr4_3:29498419-29498438 Msa0637560:intron 25.0%
!!! TTGTTTTGTACAATTACGTT+GGG - chr4_3:29498718-29498737 Msa0637560:intron 25.0%
! GTTTATATGTTTAATGCCAA+TGG + chr4_3:29498772-29498791 None:intergenic 25.0%
!!! ATTGATAACTTTTTCTTGCA+AGG + chr4_3:29499402-29499421 None:intergenic 25.0%
! ATCATAATTCCTTGTATCAT+GGG - chr4_3:29499635-29499654 Msa0637560:five_prime_UTR 25.0%
! TTCAATAGAATGTGTTTAGA+TGG - chr4_3:29499867-29499886 Msa0637560:five_prime_UTR 25.0%
! TCAATAGAATGTGTTTAGAT+GGG - chr4_3:29499868-29499887 Msa0637560:five_prime_UTR 25.0%
GACATGCACATTTAAATGAA+AGG - chr4_3:29495751-29495770 Msa0637560:three_prime_UTR 30.0%
AATCAAGAATGTGGAAACTT+TGG + chr4_3:29496143-29496162 None:intergenic 30.0%
! AGTTTCCACATTCTTGATTT+TGG - chr4_3:29496144-29496163 Msa0637560:CDS 30.0%
TGATGAGTAAATGTGTGAAA+CGG + chr4_3:29496604-29496623 None:intergenic 30.0%
! ATTTTCAGAAGGAGAAAAGA+AGG - chr4_3:29496930-29496949 Msa0637560:intron 30.0%
! GTTTCTTTTGATATTGTTGG+TGG + chr4_3:29497007-29497026 None:intergenic 30.0%
AATATCAAAAGAAACAGAGG+AGG - chr4_3:29497012-29497031 Msa0637560:CDS 30.0%
ATCTTCAGAATCAGAATGTT+TGG + chr4_3:29497044-29497063 None:intergenic 30.0%
AAAATTCTTTAATCTCCCTC+TGG + chr4_3:29497147-29497166 None:intergenic 30.0%
! AAAGGCAGTTTGAATTTTGA+TGG + chr4_3:29497173-29497192 None:intergenic 30.0%
TCAAAATTCAAACTGCCTTT+AGG - chr4_3:29497173-29497192 Msa0637560:intron 30.0%
CAAAATTCAAACTGCCTTTA+GGG - chr4_3:29497174-29497193 Msa0637560:intron 30.0%
AAAATTCAAACTGCCTTTAG+GGG - chr4_3:29497175-29497194 Msa0637560:intron 30.0%
TGTTATAAACCCACTTAGAT+TGG - chr4_3:29497296-29497315 Msa0637560:CDS 30.0%
TTATTGCTGTGATTTAGTCA+GGG + chr4_3:29497590-29497609 None:intergenic 30.0%
TTTATTGCTGTGATTTAGTC+AGG + chr4_3:29497591-29497610 None:intergenic 30.0%
ATAGGATCAGAATCAATTTG+AGG + chr4_3:29498029-29498048 None:intergenic 30.0%
AACTAAAGCTTATAGTAAGG+TGG + chr4_3:29498178-29498197 None:intergenic 30.0%
!! GTTGTTTTGTACAATTACGT+TGG - chr4_3:29498717-29498736 Msa0637560:intron 30.0%
TCAGAAAGAAGTAAAGTGAA+TGG - chr4_3:29499000-29499019 Msa0637560:intron 30.0%
!! TACAGCTCACATTCTAAAAT+CGG - chr4_3:29499102-29499121 Msa0637560:intron 30.0%
TAAAACTAGGAGATCTTTGT+TGG + chr4_3:29499479-29499498 None:intergenic 30.0%
!!! ACAAAGATCTCCTAGTTTTA+AGG - chr4_3:29499479-29499498 Msa0637560:five_prime_UTR 30.0%
!!! CAAAGATCTCCTAGTTTTAA+GGG - chr4_3:29499480-29499499 Msa0637560:five_prime_UTR 30.0%
ACTGAAATACCCTTAAAACT+AGG + chr4_3:29499492-29499511 None:intergenic 30.0%
! ATAGTCCTGCTTGATTTTAT+AGG + chr4_3:29499516-29499535 None:intergenic 30.0%
AAAATCAAGCAGGACTATAA+AGG - chr4_3:29499518-29499537 Msa0637560:five_prime_UTR 30.0%
! GTATCATTAGCTTCATTTGA+AGG + chr4_3:29499595-29499614 None:intergenic 30.0%
GATCATAATTCCTTGTATCA+TGG - chr4_3:29499634-29499653 Msa0637560:five_prime_UTR 30.0%
TTGAGAATTGAACATTAGTG+TGG - chr4_3:29499731-29499750 Msa0637560:five_prime_UTR 30.0%
TTGAAATTGAGAATCACACA+AGG + chr4_3:29499852-29499871 None:intergenic 30.0%
AAATTGAAAAGGACCCATGA+AGG - chr4_3:29495902-29495921 Msa0637560:three_prime_UTR 35.0%
AAATTCCTCTTTGCCTTCAT+GGG + chr4_3:29495918-29495937 None:intergenic 35.0%
GCTCATGAAGATAAATGCAT+AGG + chr4_3:29495959-29495978 None:intergenic 35.0%
GAATTTCTGCCCTTTCAAAT+AGG - chr4_3:29496071-29496090 Msa0637560:CDS 35.0%
AGTCACCAAAATCAAGAATG+TGG + chr4_3:29496152-29496171 None:intergenic 35.0%
!! AAGAATGTTTGCTGGTTTCA+AGG - chr4_3:29496184-29496203 Msa0637560:CDS 35.0%
TTTGGAAGAAATAGGTGCAT+GGG + chr4_3:29496252-29496271 None:intergenic 35.0%
! ATGCACCTATTTCTTCCAAA+CGG - chr4_3:29496252-29496271 Msa0637560:CDS 35.0%
!! TTTTCAACTATCTTGGCTTG+TGG - chr4_3:29496377-29496396 Msa0637560:CDS 35.0%
! AAACCAGCTCTTCTTTTTCT+TGG + chr4_3:29496773-29496792 None:intergenic 35.0%
! TAGTGAAGAGGCTTTTTGTA+TGG - chr4_3:29496797-29496816 Msa0637560:intron 35.0%
! AGTGAAGAGGCTTTTTGTAT+GGG - chr4_3:29496798-29496817 Msa0637560:intron 35.0%
AGAAGGAGAAAAGAAGGAAA+TGG - chr4_3:29496936-29496955 Msa0637560:intron 35.0%
GAAGGAAATGGATATTTGGA+AGG - chr4_3:29496948-29496967 Msa0637560:intron 35.0%
TCAACCTATCAAAATCCAGA+GGG - chr4_3:29497129-29497148 Msa0637560:intron 35.0%
TCGAACATGAAACCTTAAAG+AGG + chr4_3:29497357-29497376 None:intergenic 35.0%
TATTGCTGTGATTTAGTCAG+GGG + chr4_3:29497589-29497608 None:intergenic 35.0%
AACTTATTCTCTCTCGTAGT+AGG + chr4_3:29497665-29497684 None:intergenic 35.0%
AACAAAGAAAAATCTCGGGA+AGG - chr4_3:29497798-29497817 Msa0637560:intron 35.0%
!! CAGAAGCTTGTTAAAAAGTC+AGG - chr4_3:29497962-29497981 Msa0637560:intron 35.0%
! CAATTTGAGGTACTACTAGA+TGG + chr4_3:29498016-29498035 None:intergenic 35.0%
TGATTCTGATCCTATTGTGT+TGG - chr4_3:29498034-29498053 Msa0637560:intron 35.0%
AGTACCTCAAATTCAACTCT+AGG - chr4_3:29498080-29498099 Msa0637560:intron 35.0%
GTACCTCAAATTCAACTCTA+GGG - chr4_3:29498081-29498100 Msa0637560:intron 35.0%
GGGAAGGTAAAAACAAATAC+AGG - chr4_3:29498101-29498120 Msa0637560:intron 35.0%
AAACTTCAAGCTATCATTCG+TGG - chr4_3:29498259-29498278 Msa0637560:intron 35.0%
! TCTTCAGAGTATTCATAGCT+TGG + chr4_3:29498300-29498319 None:intergenic 35.0%
TCCAATCAAAGATTTGTGCA+AGG - chr4_3:29498341-29498360 Msa0637560:intron 35.0%
TCCTTGCACAAATCTTTGAT+TGG + chr4_3:29498345-29498364 None:intergenic 35.0%
TCCAAATGGTTGAAGGAAAA+TGG - chr4_3:29498368-29498387 Msa0637560:intron 35.0%
CCAAATGGTTGAAGGAAAAT+GGG - chr4_3:29498369-29498388 Msa0637560:intron 35.0%
ACTCAAACAGTCAAAGAAAG+TGG - chr4_3:29498555-29498574 Msa0637560:CDS 35.0%
CTCAAACAGTCAAAGAAAGT+GGG - chr4_3:29498556-29498575 Msa0637560:CDS 35.0%
GGATGACAGTACATTATTGA+AGG - chr4_3:29498577-29498596 Msa0637560:CDS 35.0%
CAGTACATTATTGAAGGAAG+AGG - chr4_3:29498583-29498602 Msa0637560:CDS 35.0%
TTATGTGTTTATAGCGCCAT+TGG - chr4_3:29498753-29498772 Msa0637560:intron 35.0%
GGATAGCTTATGAAAACAAC+AGG + chr4_3:29498860-29498879 None:intergenic 35.0%
!! GTTGTTTTCATAAGCTATCC+TGG - chr4_3:29498860-29498879 Msa0637560:exon 35.0%
AACTTATAGAAACCCTACAG+AGG - chr4_3:29498968-29498987 Msa0637560:intron 35.0%
GAAGTAAAGTGAATGGAAGA+TGG - chr4_3:29499007-29499026 Msa0637560:intron 35.0%
! TCTAAAATCGGTGACGAATT+TGG - chr4_3:29499114-29499133 Msa0637560:intron 35.0%
CAAAATCCAAATCCAGTTGA+AGG - chr4_3:29499171-29499190 Msa0637560:intron 35.0%
! CAAGAAATTCTTTTCCTCAC+AGG - chr4_3:29499217-29499236 Msa0637560:intron 35.0%
AACAGTGAAGTCCTTAATAG+AGG - chr4_3:29499435-29499454 Msa0637560:five_prime_UTR 35.0%
GAACTTTGTCTATCCCAATT+AGG + chr4_3:29499573-29499592 None:intergenic 35.0%
ATAATTCCTTGTATCATGGG+AGG - chr4_3:29499638-29499657 Msa0637560:five_prime_UTR 35.0%
TAATTCCTTGTATCATGGGA+GGG - chr4_3:29499639-29499658 Msa0637560:five_prime_UTR 35.0%
GAAATTCCTCTTTGCCTTCA+TGG + chr4_3:29495919-29495938 None:intergenic 40.0%
CAAGAATGTGGAAACTTTGG+TGG + chr4_3:29496140-29496159 None:intergenic 40.0%
! CTGCAGTCATTAACTTGAGA+TGG + chr4_3:29496218-29496237 None:intergenic 40.0%
AATAGGTGCATGGGAACAAA+GGG + chr4_3:29496243-29496262 None:intergenic 40.0%
AAATAGGTGCATGGGAACAA+AGG + chr4_3:29496244-29496263 None:intergenic 40.0%
GTTTGGAAGAAATAGGTGCA+TGG + chr4_3:29496253-29496272 None:intergenic 40.0%
! GCTGGTTTAATCTAGTGAAG+AGG - chr4_3:29496785-29496804 Msa0637560:intron 40.0%
CTCACATTCTACACAAGAGA+AGG - chr4_3:29496822-29496841 Msa0637560:intron 40.0%
CTCAACCTATCAAAATCCAG+AGG - chr4_3:29497128-29497147 Msa0637560:intron 40.0%
!! ATCTCCCTCTGGATTTTGAT+AGG + chr4_3:29497136-29497155 None:intergenic 40.0%
ACAGCTTGAAGAAACTCACA+AGG + chr4_3:29497204-29497223 None:intergenic 40.0%
CTATAGCCTAAATCCTCCTT+TGG - chr4_3:29497227-29497246 Msa0637560:CDS 40.0%
ATCATGCCAAAGGAGGATTT+AGG + chr4_3:29497236-29497255 None:intergenic 40.0%
ACTAAAGATCATGCCAAAGG+AGG + chr4_3:29497243-29497262 None:intergenic 40.0%
AGCACTAAAGATCATGCCAA+AGG + chr4_3:29497246-29497265 None:intergenic 40.0%
ATTCCCTCCAGTGTCAATTT+GGG - chr4_3:29497376-29497395 Msa0637560:CDS 40.0%
AGTCTGATAGTTATGGACGA+AGG - chr4_3:29497821-29497840 Msa0637560:intron 40.0%
TAGAGAACATGTGGCTGATA+CGG - chr4_3:29497854-29497873 Msa0637560:intron 40.0%
ATACGGCCTCAATTGTATTG+AGG - chr4_3:29497871-29497890 Msa0637560:intron 40.0%
CTACGTCCTCAATACAATTG+AGG + chr4_3:29497880-29497899 None:intergenic 40.0%
CAAGCTTCTGCTTCGAAAAA+AGG + chr4_3:29497952-29497971 None:intergenic 40.0%
! GAGGTACTACTAGATGGTAA+AGG + chr4_3:29498010-29498029 None:intergenic 40.0%
!! GATCCTATTGTGTTGGTCTT+CGG - chr4_3:29498041-29498060 Msa0637560:intron 40.0%
TTTCCGAAGACCAACACAAT+AGG + chr4_3:29498047-29498066 None:intergenic 40.0%
CTTCCCTAGAGTTGAATTTG+AGG + chr4_3:29498087-29498106 None:intergenic 40.0%
! CTCAAATTCAACTCTAGGGA+AGG - chr4_3:29498085-29498104 Msa0637560:intron 40.0%
! GCATTTTCTTGTTCATGGAC+AGG - chr4_3:29498201-29498220 Msa0637560:intron 40.0%
! CCCATTTTCCTTCAACCATT+TGG + chr4_3:29498372-29498391 None:intergenic 40.0%
CTGTTTGGGGGAAAATACTT+CGG + chr4_3:29498888-29498907 None:intergenic 40.0%
AAGCATTTGAGCGACTGTTT+GGG + chr4_3:29498902-29498921 None:intergenic 40.0%
TAAGCATTTGAGCGACTGTT+TGG + chr4_3:29498903-29498922 None:intergenic 40.0%
GTAAAGTGAATGGAAGATGG+AGG - chr4_3:29499010-29499029 Msa0637560:intron 40.0%
AAAATCGGTGACGAATTTGG+AGG - chr4_3:29499117-29499136 Msa0637560:intron 40.0%
TCCAAATCCAGTTGAAGGAT+TGG - chr4_3:29499176-29499195 Msa0637560:intron 40.0%
TCCAATCCTTCAACTGGATT+TGG + chr4_3:29499180-29499199 None:intergenic 40.0%
! GAAATTCTTTTCCTCACAGG+AGG - chr4_3:29499220-29499239 Msa0637560:intron 40.0%
CAACAAGTTCACCAAAAGCA+AGG - chr4_3:29499337-29499356 Msa0637560:five_prime_UTR 40.0%
! TAGTTCCAAGACCTTGCTTT+TGG + chr4_3:29499351-29499370 None:intergenic 40.0%
CACTAAGCTTGCCTCTATTA+AGG + chr4_3:29499449-29499468 None:intergenic 40.0%
CTTAATAGAGGCAAGCTTAG+TGG - chr4_3:29499447-29499466 Msa0637560:five_prime_UTR 40.0%
CAGTGCCTATAAAATCAAGC+AGG - chr4_3:29499508-29499527 Msa0637560:five_prime_UTR 40.0%
AGATAGCTCACTGCCTAATT+GGG - chr4_3:29499557-29499576 Msa0637560:five_prime_UTR 40.0%
GGCATGTTCATGTGTCTGTT+GGG + chr4_3:29495851-29495870 None:intergenic 45.0%
AGGCATGTTCATGTGTCTGT+TGG + chr4_3:29495852-29495871 None:intergenic 45.0%
! AGGCACCGTTTGGAAGAAAT+AGG + chr4_3:29496260-29496279 None:intergenic 45.0%
!! AAAAGACAAGAGGCACCGTT+TGG + chr4_3:29496270-29496289 None:intergenic 45.0%
TGGCCAAGAAAAAGAAGAGC+TGG - chr4_3:29496767-29496786 Msa0637560:intron 45.0%
! GTTGGTGGAGCTGTAATTGA+AGG + chr4_3:29496992-29497011 None:intergenic 45.0%
ACTCACAAGGTAACCCCTAA+AGG + chr4_3:29497191-29497210 None:intergenic 45.0%
! TAAACCCACTTAGATTGGCC+TGG - chr4_3:29497301-29497320 Msa0637560:CDS 45.0%
!! TTAGATTGGCCTGGTGGTAT+TGG - chr4_3:29497310-29497329 Msa0637560:CDS 45.0%
GATTCCCTCCAGTGTCAATT+TGG - chr4_3:29497375-29497394 Msa0637560:CDS 45.0%
TAACCCACCCAAATTGACAC+TGG + chr4_3:29497386-29497405 None:intergenic 45.0%
GGGAAGGAGTCTGATAGTTA+TGG - chr4_3:29497814-29497833 Msa0637560:intron 45.0%
TTTAGGCGACGGCATCAAAA+AGG + chr4_3:29497915-29497934 None:intergenic 45.0%
AGGTTCTGCCACCAAGATTT+AGG + chr4_3:29497932-29497951 None:intergenic 45.0%
TGTTCATGGACAGGCAAAGA+AGG - chr4_3:29498210-29498229 Msa0637560:intron 45.0%
TATTCCCTTCAATGCCCTCA+AGG + chr4_3:29498236-29498255 None:intergenic 45.0%
TTGTGCAAGGAGACTCCAAA+TGG - chr4_3:29498354-29498373 Msa0637560:intron 45.0%
AGGAGACTCCAAATGGTTGA+AGG - chr4_3:29498361-29498380 Msa0637560:intron 45.0%
AGCATTTGAGCGACTGTTTG+GGG + chr4_3:29498901-29498920 None:intergenic 45.0%
! TGAATGGAAGATGGAGGTAC+TGG - chr4_3:29499016-29499035 Msa0637560:intron 45.0%
GGTGATTCCAATCCTTCAAC+TGG + chr4_3:29499186-29499205 None:intergenic 45.0%
ATTGAACACTTCCTCCTGTG+AGG + chr4_3:29499234-29499253 None:intergenic 45.0%
!! CACAGGAGGAAGTGTTCAAT+AGG - chr4_3:29499234-29499253 Msa0637560:intron 45.0%
CCAATCATTGTCAAGCTCTC+CGG - chr4_3:29499263-29499282 Msa0637560:intron 45.0%
GTTCACCAAAAGCAAGGTCT+TGG - chr4_3:29499343-29499362 Msa0637560:five_prime_UTR 45.0%
CAGATAGCTCACTGCCTAAT+TGG - chr4_3:29499556-29499575 Msa0637560:five_prime_UTR 45.0%
AAGGACCCATGAAGGCAAAG+AGG - chr4_3:29495910-29495929 Msa0637560:three_prime_UTR 50.0%
ACCACCAGGCCAATCTAAGT+GGG + chr4_3:29497308-29497327 None:intergenic 50.0%
TACCACCAGGCCAATCTAAG+TGG + chr4_3:29497309-29497328 None:intergenic 50.0%
!! GTGGTATTGGCTTGAGACCT+GGG - chr4_3:29497323-29497342 Msa0637560:CDS 50.0%
! TTAAAGAGGAGCACACTCCC+AGG + chr4_3:29497343-29497362 None:intergenic 50.0%
! TGGGAGTGTGCTCCTCTTTA+AGG - chr4_3:29497342-29497361 Msa0637560:CDS 50.0%
CCACCCAAATTGACACTGGA+GGG + chr4_3:29497382-29497401 None:intergenic 50.0%
CCTCCAGTGTCAATTTGGGT+GGG - chr4_3:29497380-29497399 Msa0637560:CDS 50.0%
TGATGCCGTCGCCTAAATCT+TGG - chr4_3:29497918-29497937 Msa0637560:intron 50.0%
TGCCACCAAGATTTAGGCGA+CGG + chr4_3:29497926-29497945 None:intergenic 50.0%
ACAGGCAAAGAAGGCCTTGA+GGG - chr4_3:29498219-29498238 Msa0637560:intron 50.0%
!! AAGGCCTTGAGGGCATTGAA+GGG - chr4_3:29498229-29498248 Msa0637560:intron 50.0%
GCATTTGAGCGACTGTTTGG+GGG + chr4_3:29498900-29498919 None:intergenic 50.0%
TGACTCTGCTGACCTCTGTA+GGG + chr4_3:29498983-29499002 None:intergenic 50.0%
CCGGAGAGCTTGACAATGAT+TGG + chr4_3:29499266-29499285 None:intergenic 50.0%
TCAGTAGCAGCCATGTATGC+CGG + chr4_3:29499294-29499313 None:intergenic 50.0%
TCAAGCCCTCCCATGATACA+AGG + chr4_3:29499647-29499666 None:intergenic 50.0%
!! ACCCACTTAGATTGGCCTGG+TGG - chr4_3:29497304-29497323 Msa0637560:CDS 55.0%
GGTCTCAAGCCAATACCACC+AGG + chr4_3:29497322-29497341 None:intergenic 55.0%
!! GGTGGTATTGGCTTGAGACC+TGG - chr4_3:29497322-29497341 Msa0637560:CDS 55.0%
CCCTCCAGTGTCAATTTGGG+TGG - chr4_3:29497379-29497398 Msa0637560:CDS 55.0%
CCCACCCAAATTGACACTGG+AGG + chr4_3:29497383-29497402 None:intergenic 55.0%
TGCCGTCGCCTAAATCTTGG+TGG - chr4_3:29497921-29497940 Msa0637560:intron 55.0%
GACAGGCAAAGAAGGCCTTG+AGG - chr4_3:29498218-29498237 Msa0637560:intron 55.0%
!! GAAGGCCTTGAGGGCATTGA+AGG - chr4_3:29498228-29498247 Msa0637560:intron 55.0%
!! GGGGAAAATACTTCGGTGCC+AGG + chr4_3:29498881-29498900 None:intergenic 55.0%
CTGACTCTGCTGACCTCTGT+AGG + chr4_3:29498984-29499003 None:intergenic 55.0%
!! TGGAAGATGGAGGTACTGGC+TGG - chr4_3:29499020-29499039 Msa0637560:intron 55.0%
!! GAGGTACTGGCTGGAGCAAT+GGG - chr4_3:29499029-29499048 Msa0637560:intron 55.0%
!! GGAGGTACTGGCTGGAGCAA+TGG - chr4_3:29499028-29499047 Msa0637560:intron 60.0%
GTCAAGCTCTCCGGCAACTC+CGG - chr4_3:29499272-29499291 Msa0637560:intron 60.0%
TCCGGCAACTCCGGCATACA+TGG - chr4_3:29499281-29499300 Msa0637560:intron 60.0%
GCCATGTATGCCGGAGTTGC+CGG + chr4_3:29499285-29499304 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 29495744 29499891 29495744 ID=Msa0637560;Name=Msa0637560
chr4_3 mRNA 29495744 29499891 29495744 ID=Msa0637560-mRNA-1;Parent=Msa0637560;Name=Msa0637560-mRNA-1;_AED=0.09;_eAED=0.09;_QI=614|1|1|1|0.8|0.66|6|289|436
chr4_3 exon 29495744 29496647 29495744 ID=Msa0637560-mRNA-1:exon:7204;Parent=Msa0637560-mRNA-1
chr4_3 exon 29496953 29497084 29496953 ID=Msa0637560-mRNA-1:exon:7203;Parent=Msa0637560-mRNA-1
chr4_3 exon 29497194 29497412 29497194 ID=Msa0637560-mRNA-1:exon:7202;Parent=Msa0637560-mRNA-1
chr4_3 exon 29498431 29498697 29498431 ID=Msa0637560-mRNA-1:exon:7201;Parent=Msa0637560-mRNA-1
chr4_3 exon 29498792 29498910 29498792 ID=Msa0637560-mRNA-1:exon:7200;Parent=Msa0637560-mRNA-1
chr4_3 exon 29499319 29499891 29499319 ID=Msa0637560-mRNA-1:exon:7199;Parent=Msa0637560-mRNA-1
chr4_3 five_prime_UTR 29499319 29499891 29499319 ID=Msa0637560-mRNA-1:five_prime_utr;Parent=Msa0637560-mRNA-1
chr4_3 five_prime_UTR 29498870 29498910 29498870 ID=Msa0637560-mRNA-1:five_prime_utr;Parent=Msa0637560-mRNA-1
chr4_3 CDS 29498792 29498869 29498792 ID=Msa0637560-mRNA-1:cds;Parent=Msa0637560-mRNA-1
chr4_3 CDS 29498431 29498697 29498431 ID=Msa0637560-mRNA-1:cds;Parent=Msa0637560-mRNA-1
chr4_3 CDS 29497194 29497412 29497194 ID=Msa0637560-mRNA-1:cds;Parent=Msa0637560-mRNA-1
chr4_3 CDS 29496953 29497084 29496953 ID=Msa0637560-mRNA-1:cds;Parent=Msa0637560-mRNA-1
chr4_3 CDS 29496033 29496647 29496033 ID=Msa0637560-mRNA-1:cds;Parent=Msa0637560-mRNA-1
chr4_3 three_prime_UTR 29495744 29496032 29495744 ID=Msa0637560-mRNA-1:three_prime_utr;Parent=Msa0637560-mRNA-1
Gene Sequence

>Msa0637560

ATGGCCAAGAAAAAGAAGAGCTGGTTTAATCTAGTGAAGAGGCTTTTTGTATGGGACTCACATTCTACACAAGAGAAGAAGGAGAAAAGAAGGAAATGGATATTTGGAAGGTTAAAGACAAAAAAGTTACCTTCAATTACAGCTCCACCAACAATATCAAAAGAAACAGAGGAGGAAAAAACCAAACATTCTGATTCTGAAGATGCTGTTAGTGCTACTGAAGTTGTTTCAGAATCTAGTTATCAAAATCAAGATAAATATGAAGAATCTCAACCTATCAAAATCCAGAGGGAGATTAAAGAATTTTCAGCCATCAAAATTCAAACTGCCTTTAGGGGTTACCTTGCAAAGAAGGCCTTGAGGGCATTGAAGGGAATAGTGAAACTTCAAGCTATCATTCGTGGAAGAGCAGTGAGACGCCAAGCTATGAATACTCTGAAGAGCTTGCAGTCAATTGTAAGTATCCAATCAAAGATTTGTGCAAGGAGACTCCAAATGGTTGAAGGAAAATGGGATTATTTTGAAGATGAAGAGATACATAGTTCTAAAGACAAGATAATTAGGATGGACTCAAACAGTCAAAGAAAGTGGGATGACAGTACATTATTGAAGGAAGAGGTAGATGCTTCTTGCATGATCAAGAAAGAAGCCATTATTAAGAGAGAAAGAATAAAAGAGTACACATTTAATCATAGAAGGTCAGCAGAGTCAGAAAGAAGTAAAGTGAATGGAAGATGGAGGTACTGGCTGGAGCAATGGGTAGATACACAACTTTCTAAAAGTAAAGAACTTGAAGATTTAGACTCAGTTTACAGCTCACATTCTAAAATCGGTGACGAATTTGGAGGAAGACAACTTAAGCTGAGAAATACTACTAGACAAAATCCAAATCCAGTTGAAGGATTGGAATCACCAATACTATTTTCAAGAAATTCTTTTCCTCACAGGAGGAAGTGTTCAATAGGAGAAGACCAATCATTGTCAAGCTCTCCGGCAACTCCGGCATACATGGCTGCTACTGAATCAGCTAAAGCAAAAGCAAGATCAACAAGTTCACCAAAAGCAAGGTCTTGGAACTATGACATGAACACTGATAGCTATTTATCACCTTGCAAGAAAAAGTTATCAATTGTTTCATCTGTTAACAGTGAAGTCCTTAATAGAGGCAAGCTTAGTGGTTGTAACCAACAAAGATCTCCTAGTTTTAAGGGTATTTCAGTGCCTATAAAATCAAGCAGGACTATAAAGGATCTCAGTATTAATTCAGATAGCTCACTGCCTAATTGGGATAGACAAAGTTCCTTCAAATGA
Protein sequence

>Msa0637560

MAKKKKSWFNLVKRLFVWDSHSTQEKKEKRRKWIFGRLKTKKLPSITAPPTISKETEEEKTKHSDSEDAVSATEVVSESSYQNQDKYEESQPIKIQREIKEFSAIKIQTAFRGYLAKKALRALKGIVKLQAIIRGRAVRRQAMNTLKSLQSIVSIQSKICARRLQMVEGKWDYFEDEEIHSSKDKIIRMDSNSQRKWDDSTLLKEEVDASCMIKKEAIIKRERIKEYTFNHRRSAESERSKVNGRWRYWLEQWVDTQLSKSKELEDLDSVYSSHSKIGDEFGGRQLKLRNTTRQNPNPVEGLESPILFSRNSFPHRRKCSIGEDQSLSSSPATPAYMAATESAKAKARSTSSPKARSWNYDMNTDSYLSPCKKKLSIVSSVNSEVLNRGKLSGCNQQRSPSFKGISVPIKSSRTIKDLSINSDSSLPNWDRQSSFK*