AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0795870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0795870 MtrunA17_Chr5g0398891 99.062 320 2 1 1 319 1 320 0.0 640
Msa0795870 MtrunA17_Chr4g0048121 50.508 295 129 4 1 295 1 278 7.45e-101 298
Msa0795870 MtrunA17_Chr2g0281201 53.279 244 113 1 73 316 10 252 8.44e-97 286
Msa0795870 MtrunA17_Chr1g0177121 42.953 298 154 3 1 295 1 285 1.63e-86 262
Msa0795870 MtrunA17_Chr1g0177131 48.988 247 125 1 49 295 44 289 2.35e-84 258
Msa0795870 MtrunA17_Chr7g0267551 46.122 245 131 1 53 297 31 274 8.69e-78 239
Msa0795870 MtrunA17_Chr5g0404401 46.128 297 136 6 1 294 1 276 3.39e-77 238
Msa0795870 MtrunA17_Chr2g0322801 44.781 297 148 5 1 295 1 283 1.27e-75 234
Msa0795870 MtrunA17_Chr6g0461261 41.077 297 158 3 1 297 1 280 7.67e-73 227
Msa0795870 MtrunA17_Chr8g0370611 41.221 131 64 3 1 129 1 120 5.92e-20 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0795870 AT1G08560.1 65.312 320 100 5 1 319 1 310 6.53e-133 380
Msa0795870 AT1G61290.1 48.562 313 139 4 1 311 1 293 7.25e-104 306
Msa0795870 AT1G61290.2 48.562 313 139 4 1 311 1 293 7.25e-104 306
Msa0795870 AT4G03330.1 47.937 315 149 3 1 315 1 300 1.38e-94 283
Msa0795870 AT1G11250.1 47.458 295 132 4 1 295 1 272 9.90e-92 275
Msa0795870 AT3G11820.1 50.575 261 128 1 35 295 29 288 2.95e-88 268
Msa0795870 AT3G11820.2 52.632 247 116 1 49 295 12 257 7.62e-88 266
Msa0795870 AT3G52400.1 43.624 298 158 3 1 297 1 289 5.05e-80 247
Msa0795870 AT2G18260.2 38.730 315 182 4 1 315 1 304 1.02e-70 222
Msa0795870 AT2G18260.1 38.730 315 182 4 1 315 1 304 1.02e-70 222
Msa0795870 AT3G03800.2 43.019 265 150 1 53 317 38 301 5.76e-68 215
Msa0795870 AT3G03800.1 43.019 265 150 1 53 317 38 301 5.76e-68 215
Msa0795870 AT5G08080.1 43.729 295 149 4 1 295 1 278 2.00e-66 211
Msa0795870 AT5G08080.4 43.729 295 149 4 1 295 1 278 2.00e-66 211
Msa0795870 AT5G08080.3 43.434 297 158 6 1 295 1 289 8.16e-65 207
Msa0795870 AT5G08080.5 39.171 217 115 4 1 217 1 200 1.25e-31 118
Msa0795870 AT5G08080.2 39.171 217 115 4 1 217 1 200 1.25e-31 118

Find 61 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGATTGAGAAGAGTTTAT+TGG 0.159342 5_3:-7884614 Msa0795870:CDS
GGAGATGATGAAAGTTTCTT+AGG 0.183110 5_3:-7884715 Msa0795870:CDS
GGAGCTTATGATGGAGTTTC+AGG 0.211805 5_3:-7885098 Msa0795870:intron
CTTTGATCAATTGGGTATAA+AGG 0.240284 5_3:+7885582 None:intergenic
ATCATTCATCTTTGATCAAT+TGG 0.253149 5_3:+7885573 None:intergenic
ATTTGAGAGAAGAGAGAAAA+AGG 0.256376 5_3:+7885760 None:intergenic
TGAAGAAAGCAAAGTGTATT+AGG 0.275539 5_3:-7885246 Msa0795870:CDS
ATAATAATTGTTCTATATAT+TGG 0.292414 5_3:-7884138 Msa0795870:three_prime_UTR
CAAATCTCACAAAATCAAAA+AGG 0.336260 5_3:-7885742 Msa0795870:intron
AACTGATATGAATTTGTTCT+TGG 0.340603 5_3:-7885419 Msa0795870:CDS
CAATATATGATAACATAATA+AGG 0.342005 5_3:+7884226 None:intergenic
TAGAATTGGTCTTGTTTGAT+TGG 0.344183 5_3:-7884098 Msa0795870:three_prime_UTR
ACTAGAATTGCTGTTACTAA+TGG 0.388743 5_3:-7885139 Msa0795870:CDS
ACATGGAAGAGGAAAGGTTC+TGG 0.392183 5_3:-7884677 Msa0795870:CDS
AAGATCTTCACTGACCCATT+TGG 0.394651 5_3:-7885443 Msa0795870:CDS
AATTCATATCAGTTTCCAAA+TGG 0.400693 5_3:+7885428 None:intergenic
TGAGAAAGTAAGAACAGAAA+TGG 0.403034 5_3:-7885389 Msa0795870:CDS
ATTCTAGTTCTATAAATTGC+TGG 0.404484 5_3:+7885154 None:intergenic
TAGGACTCAACTCGAAGAAA+TGG 0.407461 5_3:-7885227 Msa0795870:CDS
TCATTCATCTTTGATCAATT+GGG 0.411410 5_3:+7885574 None:intergenic
TTACAATTTAGAAATAGAAT+TGG 0.412578 5_3:-7884112 Msa0795870:three_prime_UTR
TGAAGCACAAGGTGAGAAAA+TGG 0.413624 5_3:-7884554 Msa0795870:CDS
GATGAAGTTGATTTAGAAGC+TGG 0.444831 5_3:-7885496 Msa0795870:CDS
GCAGGAAGTGGATGTGCATT+GGG 0.446829 5_3:-7884441 Msa0795870:CDS
AGAAGATATTATACAGTGAC+AGG 0.449572 5_3:-7884781 Msa0795870:CDS
CTGCTGAAACTCACTACAAT+GGG 0.453019 5_3:+7884379 None:intergenic
CTGAAGCTTTGAAAGAATTG+AGG 0.453110 5_3:-7885300 Msa0795870:CDS
TTCATATTACACATAAAAGA+AGG 0.454819 5_3:+7884346 None:intergenic
GCTGCTAATAGAAGACTCTC+TGG 0.458709 5_3:-7885193 Msa0795870:CDS
ATTCATATCAGTTTCCAAAT+GGG 0.460811 5_3:+7885429 None:intergenic
GCTTCTCATTATGTTAAAGA+TGG 0.464968 5_3:-7884505 Msa0795870:CDS
TGAAGCTTTGAAAGAATTGA+GGG 0.466131 5_3:-7885299 Msa0795870:CDS
GAGATGATGAAAGTTTCTTA+GGG 0.469669 5_3:-7884714 Msa0795870:CDS
TATGAATTTGTTCTTGGAAG+AGG 0.470619 5_3:-7885413 Msa0795870:CDS
AGCAGGAAGTGGATGTGCAT+TGG 0.476019 5_3:-7884442 Msa0795870:CDS
ATTGAGAAGATAATATCAAA+TGG 0.477269 5_3:-7884736 Msa0795870:CDS
ATCAGAAAAGTAGCAGGAAG+TGG 0.480407 5_3:-7884453 Msa0795870:CDS
AACAGTATCAGAAAAGTAGC+AGG 0.504319 5_3:-7884459 Msa0795870:CDS
GAAACTCAAGGAGCTTATGA+TGG 0.521896 5_3:-7885107 Msa0795870:CDS
GATGGTACAAAGAATCTTCA+CGG 0.525784 5_3:-7884487 Msa0795870:CDS
GTATGTTACAACAGGGGCTG+AGG 0.531696 5_3:-7884840 Msa0795870:intron
GAGAAAGTAAGAACAGAAAT+GGG 0.536281 5_3:-7885388 Msa0795870:CDS
TGATGAAAGTTTCTTAGGGA+AGG 0.540453 5_3:-7884710 Msa0795870:CDS
AGACTCTCTGGACTTAAAGA+TGG 0.542560 5_3:-7885181 Msa0795870:CDS
TGAATATTGAAAGGAAGTGA+AGG 0.545573 5_3:+7885853 None:intergenic
AAGTAGATTTGAATATTGAA+AGG 0.547316 5_3:+7885844 None:intergenic
GCAATACAAGAACATGGAAG+AGG 0.566682 5_3:-7884688 Msa0795870:CDS
ACTGCTGAAACTCACTACAA+TGG 0.567938 5_3:+7884378 None:intergenic
AGCGAATACAAAGAAACAGT+AGG 0.587219 5_3:-7884805 Msa0795870:CDS
GCGAATACAAAGAAACAGTA+GGG 0.593645 5_3:-7884804 Msa0795870:CDS
TGGCTTGCGTAAGAAACTCA+AGG 0.596215 5_3:-7885119 Msa0795870:CDS
GAAAGAAGCGCAGATTGAGA+AGG 0.596374 5_3:+7885793 None:intergenic
AGTTGGGAAAATGGGTCTAA+CGG 0.597842 5_3:+7885885 None:intergenic
AGGGGAACATGCTGATGAAG+AGG 0.599762 5_3:-7884761 Msa0795870:CDS
ACAAGAACATGGAAGAGGAA+AGG 0.606969 5_3:-7884683 Msa0795870:CDS
GGGAAGGCAATACAAGAACA+TGG 0.609551 5_3:-7884694 Msa0795870:CDS
AGGAAAGGTTCTGGAAACTG+TGG 0.660613 5_3:-7884668 Msa0795870:CDS
AGTCGTACACAACTCAACAA+AGG 0.678381 5_3:+7884266 None:intergenic
GAAGATATTATACAGTGACA+GGG 0.694420 5_3:-7884780 Msa0795870:CDS
GCTGTTATGGTTGAAGCACA+AGG 0.705464 5_3:-7884565 Msa0795870:CDS
AAGATATTATACAGTGACAG+GGG 0.720898 5_3:-7884779 Msa0795870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAATTGTTCTATATAT+TGG - chr5_3:7885853-7885872 Msa0795870:five_prime_UTR 10.0%
!! ATAATAATTGTTCTATATAT+TGG - chr5_3:7885853-7885872 Msa0795870:five_prime_UTR 10.0%
!! TAAAAAGAATATAAATGTGA+AGG + chr5_3:7884374-7884393 None:intergenic 15.0%
!!! GAATTTATGTATCAATTTTA+AGG - chr5_3:7884986-7885005 Msa0795870:intron 15.0%
!!! GAAATTAGTCTTATTTAATA+AGG + chr5_3:7885048-7885067 None:intergenic 15.0%
!! CAATATATGATAACATAATA+AGG + chr5_3:7885768-7885787 None:intergenic 15.0%
!! TTACAATTTAGAAATAGAAT+TGG - chr5_3:7885879-7885898 Msa0795870:five_prime_UTR 15.0%
!! TAAAAAGAATATAAATGTGA+AGG + chr5_3:7884374-7884393 None:intergenic 15.0%
!!! GAATTTATGTATCAATTTTA+AGG - chr5_3:7884986-7885005 Msa0795870:intron 15.0%
!!! GAAATTAGTCTTATTTAATA+AGG + chr5_3:7885048-7885067 None:intergenic 15.0%
!! CAATATATGATAACATAATA+AGG + chr5_3:7885768-7885787 None:intergenic 15.0%
!! TTACAATTTAGAAATAGAAT+TGG - chr5_3:7885879-7885898 Msa0795870:five_prime_UTR 15.0%
!! AAGTAGATTTGAATATTGAA+AGG + chr5_3:7884150-7884169 None:intergenic 20.0%
!! AGATTAACATACAAAAATTG+TGG + chr5_3:7884342-7884361 None:intergenic 20.0%
!!! TATATTCTTTTTATCTATGC+AGG - chr5_3:7884381-7884400 Msa0795870:CDS 20.0%
!!! TTTTTTTAGATCAACATAGT+TGG + chr5_3:7884463-7884482 None:intergenic 20.0%
!! ATTGAGAAGATAATATCAAA+TGG - chr5_3:7885255-7885274 Msa0795870:CDS 20.0%
!!! TCATCAAATATTTTTGGATA+TGG - chr5_3:7885404-7885423 Msa0795870:CDS 20.0%
!! TTCATATTACACATAAAAGA+AGG + chr5_3:7885648-7885667 None:intergenic 20.0%
!! AAGTAGATTTGAATATTGAA+AGG + chr5_3:7884150-7884169 None:intergenic 20.0%
!! AGATTAACATACAAAAATTG+TGG + chr5_3:7884342-7884361 None:intergenic 20.0%
!!! TATATTCTTTTTATCTATGC+AGG - chr5_3:7884381-7884400 Msa0795870:CDS 20.0%
!!! TTTTTTTAGATCAACATAGT+TGG + chr5_3:7884463-7884482 None:intergenic 20.0%
!! ATTGAGAAGATAATATCAAA+TGG - chr5_3:7885255-7885274 Msa0795870:CDS 20.0%
!!! TCATCAAATATTTTTGGATA+TGG - chr5_3:7885404-7885423 Msa0795870:CDS 20.0%
!! TTCATATTACACATAAAAGA+AGG + chr5_3:7885648-7885667 None:intergenic 20.0%
!!! TTTTTATGAGTTGGGAAAAT+GGG + chr5_3:7884117-7884136 None:intergenic 25.0%
!!! TTTTTTATGAGTTGGGAAAA+TGG + chr5_3:7884118-7884137 None:intergenic 25.0%
! CAAATCTCACAAAATCAAAA+AGG - chr5_3:7884249-7884268 Msa0795870:three_prime_UTR 25.0%
! TCATTCATCTTTGATCAATT+GGG + chr5_3:7884420-7884439 None:intergenic 25.0%
! ATCATTCATCTTTGATCAAT+TGG + chr5_3:7884421-7884440 None:intergenic 25.0%
! ATTCATATCAGTTTCCAAAT+GGG + chr5_3:7884565-7884584 None:intergenic 25.0%
! AATTCATATCAGTTTCCAAA+TGG + chr5_3:7884566-7884585 None:intergenic 25.0%
!! AACTGATATGAATTTGTTCT+TGG - chr5_3:7884572-7884591 Msa0795870:CDS 25.0%
!!! ATTCTAGTTCTATAAATTGC+TGG + chr5_3:7884840-7884859 None:intergenic 25.0%
! TCAGATAATGTCATATTCTA+AGG - chr5_3:7885066-7885085 Msa0795870:intron 25.0%
!! GGAACTTCATCAAATATTTT+TGG - chr5_3:7885398-7885417 Msa0795870:CDS 25.0%
!! GATTATACTTTTGCTTATTC+TGG - chr5_3:7885572-7885591 Msa0795870:exon 25.0%
!!! TTTTTATGAGTTGGGAAAAT+GGG + chr5_3:7884117-7884136 None:intergenic 25.0%
!!! TTTTTTATGAGTTGGGAAAA+TGG + chr5_3:7884118-7884137 None:intergenic 25.0%
! CAAATCTCACAAAATCAAAA+AGG - chr5_3:7884249-7884268 Msa0795870:three_prime_UTR 25.0%
! TCATTCATCTTTGATCAATT+GGG + chr5_3:7884420-7884439 None:intergenic 25.0%
! ATCATTCATCTTTGATCAAT+TGG + chr5_3:7884421-7884440 None:intergenic 25.0%
! ATTCATATCAGTTTCCAAAT+GGG + chr5_3:7884565-7884584 None:intergenic 25.0%
! AATTCATATCAGTTTCCAAA+TGG + chr5_3:7884566-7884585 None:intergenic 25.0%
!! AACTGATATGAATTTGTTCT+TGG - chr5_3:7884572-7884591 Msa0795870:CDS 25.0%
!!! ATTCTAGTTCTATAAATTGC+TGG + chr5_3:7884840-7884859 None:intergenic 25.0%
! TCAGATAATGTCATATTCTA+AGG - chr5_3:7885066-7885085 Msa0795870:intron 25.0%
!! GGAACTTCATCAAATATTTT+TGG - chr5_3:7885398-7885417 Msa0795870:CDS 25.0%
!! GATTATACTTTTGCTTATTC+TGG - chr5_3:7885572-7885591 Msa0795870:exon 25.0%
!!! GTGAAGGTTTTTTATGAGTT+GGG + chr5_3:7884125-7884144 None:intergenic 30.0%
!!! AGTGAAGGTTTTTTATGAGT+TGG + chr5_3:7884126-7884145 None:intergenic 30.0%
TGAATATTGAAAGGAAGTGA+AGG + chr5_3:7884141-7884160 None:intergenic 30.0%
!! GGAAATTTTTGAGGAATCTA+GGG + chr5_3:7884180-7884199 None:intergenic 30.0%
!! AGGAAATTTTTGAGGAATCT+AGG + chr5_3:7884181-7884200 None:intergenic 30.0%
! GATTGAGAAGGAAATTTTTG+AGG + chr5_3:7884189-7884208 None:intergenic 30.0%
ATTTGAGAGAAGAGAGAAAA+AGG + chr5_3:7884234-7884253 None:intergenic 30.0%
CTTTGATCAATTGGGTATAA+AGG + chr5_3:7884412-7884431 None:intergenic 30.0%
! TATGAATTTGTTCTTGGAAG+AGG - chr5_3:7884578-7884597 Msa0795870:CDS 30.0%
TGAGAAAGTAAGAACAGAAA+TGG - chr5_3:7884602-7884621 Msa0795870:CDS 30.0%
GAGAAAGTAAGAACAGAAAT+GGG - chr5_3:7884603-7884622 Msa0795870:CDS 30.0%
!! TGAAGCTTTGAAAGAATTGA+GGG - chr5_3:7884692-7884711 Msa0795870:CDS 30.0%
TGAAGAAAGCAAAGTGTATT+AGG - chr5_3:7884745-7884764 Msa0795870:CDS 30.0%
! ACTAGAATTGCTGTTACTAA+TGG - chr5_3:7884852-7884871 Msa0795870:intron 30.0%
!!! TCTTCTGCTTTTTTTCTTTC+TGG - chr5_3:7884936-7884955 Msa0795870:intron 30.0%
AAACCTTGTATGTTACAACA+GGG - chr5_3:7885144-7885163 Msa0795870:CDS 30.0%
AGAAGATATTATACAGTGAC+AGG - chr5_3:7885210-7885229 Msa0795870:CDS 30.0%
GAAGATATTATACAGTGACA+GGG - chr5_3:7885211-7885230 Msa0795870:CDS 30.0%
AAGATATTATACAGTGACAG+GGG - chr5_3:7885212-7885231 Msa0795870:CDS 30.0%
GAGATGATGAAAGTTTCTTA+GGG - chr5_3:7885277-7885296 Msa0795870:CDS 30.0%
AGAGATTGAGAAGAGTTTAT+TGG - chr5_3:7885377-7885396 Msa0795870:CDS 30.0%
!! ATTTTTGGATATGGCTGTTA+TGG - chr5_3:7885413-7885432 Msa0795870:CDS 30.0%
GCTTCTCATTATGTTAAAGA+TGG - chr5_3:7885486-7885505 Msa0795870:CDS 30.0%
!! TAGAATTGGTCTTGTTTGAT+TGG - chr5_3:7885893-7885912 Msa0795870:five_prime_UTR 30.0%
!!! GTGAAGGTTTTTTATGAGTT+GGG + chr5_3:7884125-7884144 None:intergenic 30.0%
!!! AGTGAAGGTTTTTTATGAGT+TGG + chr5_3:7884126-7884145 None:intergenic 30.0%
TGAATATTGAAAGGAAGTGA+AGG + chr5_3:7884141-7884160 None:intergenic 30.0%
!! GGAAATTTTTGAGGAATCTA+GGG + chr5_3:7884180-7884199 None:intergenic 30.0%
!! AGGAAATTTTTGAGGAATCT+AGG + chr5_3:7884181-7884200 None:intergenic 30.0%
! GATTGAGAAGGAAATTTTTG+AGG + chr5_3:7884189-7884208 None:intergenic 30.0%
ATTTGAGAGAAGAGAGAAAA+AGG + chr5_3:7884234-7884253 None:intergenic 30.0%
CTTTGATCAATTGGGTATAA+AGG + chr5_3:7884412-7884431 None:intergenic 30.0%
! TATGAATTTGTTCTTGGAAG+AGG - chr5_3:7884578-7884597 Msa0795870:CDS 30.0%
TGAGAAAGTAAGAACAGAAA+TGG - chr5_3:7884602-7884621 Msa0795870:CDS 30.0%
GAGAAAGTAAGAACAGAAAT+GGG - chr5_3:7884603-7884622 Msa0795870:CDS 30.0%
!! TGAAGCTTTGAAAGAATTGA+GGG - chr5_3:7884692-7884711 Msa0795870:CDS 30.0%
TGAAGAAAGCAAAGTGTATT+AGG - chr5_3:7884745-7884764 Msa0795870:CDS 30.0%
! ACTAGAATTGCTGTTACTAA+TGG - chr5_3:7884852-7884871 Msa0795870:intron 30.0%
!!! TCTTCTGCTTTTTTTCTTTC+TGG - chr5_3:7884936-7884955 Msa0795870:intron 30.0%
AAACCTTGTATGTTACAACA+GGG - chr5_3:7885144-7885163 Msa0795870:CDS 30.0%
AGAAGATATTATACAGTGAC+AGG - chr5_3:7885210-7885229 Msa0795870:CDS 30.0%
GAAGATATTATACAGTGACA+GGG - chr5_3:7885211-7885230 Msa0795870:CDS 30.0%
AAGATATTATACAGTGACAG+GGG - chr5_3:7885212-7885231 Msa0795870:CDS 30.0%
GAGATGATGAAAGTTTCTTA+GGG - chr5_3:7885277-7885296 Msa0795870:CDS 30.0%
AGAGATTGAGAAGAGTTTAT+TGG - chr5_3:7885377-7885396 Msa0795870:CDS 30.0%
!! ATTTTTGGATATGGCTGTTA+TGG - chr5_3:7885413-7885432 Msa0795870:CDS 30.0%
GCTTCTCATTATGTTAAAGA+TGG - chr5_3:7885486-7885505 Msa0795870:CDS 30.0%
!! TAGAATTGGTCTTGTTTGAT+TGG - chr5_3:7885893-7885912 Msa0795870:five_prime_UTR 30.0%
! GATGAAGTTGATTTAGAAGC+TGG - chr5_3:7884495-7884514 Msa0795870:CDS 35.0%
!! CTGAAGCTTTGAAAGAATTG+AGG - chr5_3:7884691-7884710 Msa0795870:CDS 35.0%
AGCAGAAGAGAAATTGACAA+GGG + chr5_3:7884925-7884944 None:intergenic 35.0%
AAGCAGAAGAGAAATTGACA+AGG + chr5_3:7884926-7884945 None:intergenic 35.0%
GAAACCTTGTATGTTACAAC+AGG - chr5_3:7885143-7885162 Msa0795870:CDS 35.0%
AACCTTGTATGTTACAACAG+GGG - chr5_3:7885145-7885164 Msa0795870:CDS 35.0%
AGCGAATACAAAGAAACAGT+AGG - chr5_3:7885186-7885205 Msa0795870:CDS 35.0%
GCGAATACAAAGAAACAGTA+GGG - chr5_3:7885187-7885206 Msa0795870:CDS 35.0%
GGAGATGATGAAAGTTTCTT+AGG - chr5_3:7885276-7885295 Msa0795870:CDS 35.0%
TGATGAAAGTTTCTTAGGGA+AGG - chr5_3:7885281-7885300 Msa0795870:CDS 35.0%
GATGGTACAAAGAATCTTCA+CGG - chr5_3:7885504-7885523 Msa0795870:CDS 35.0%
AACAGTATCAGAAAAGTAGC+AGG - chr5_3:7885532-7885551 Msa0795870:CDS 35.0%
! GATGAAGTTGATTTAGAAGC+TGG - chr5_3:7884495-7884514 Msa0795870:CDS 35.0%
!! CTGAAGCTTTGAAAGAATTG+AGG - chr5_3:7884691-7884710 Msa0795870:CDS 35.0%
AGCAGAAGAGAAATTGACAA+GGG + chr5_3:7884925-7884944 None:intergenic 35.0%
AAGCAGAAGAGAAATTGACA+AGG + chr5_3:7884926-7884945 None:intergenic 35.0%
GAAACCTTGTATGTTACAAC+AGG - chr5_3:7885143-7885162 Msa0795870:CDS 35.0%
AACCTTGTATGTTACAACAG+GGG - chr5_3:7885145-7885164 Msa0795870:CDS 35.0%
AGCGAATACAAAGAAACAGT+AGG - chr5_3:7885186-7885205 Msa0795870:CDS 35.0%
GCGAATACAAAGAAACAGTA+GGG - chr5_3:7885187-7885206 Msa0795870:CDS 35.0%
GGAGATGATGAAAGTTTCTT+AGG - chr5_3:7885276-7885295 Msa0795870:CDS 35.0%
TGATGAAAGTTTCTTAGGGA+AGG - chr5_3:7885281-7885300 Msa0795870:CDS 35.0%
GATGGTACAAAGAATCTTCA+CGG - chr5_3:7885504-7885523 Msa0795870:CDS 35.0%
AACAGTATCAGAAAAGTAGC+AGG - chr5_3:7885532-7885551 Msa0795870:CDS 35.0%
AGTTGGGAAAATGGGTCTAA+CGG + chr5_3:7884109-7884128 None:intergenic 40.0%
!! GAAGCTGGTCTTCAAAAACA+AGG - chr5_3:7884510-7884529 Msa0795870:CDS 40.0%
AAGATCTTCACTGACCCATT+TGG - chr5_3:7884548-7884567 Msa0795870:CDS 40.0%
TAGGACTCAACTCGAAGAAA+TGG - chr5_3:7884764-7884783 Msa0795870:CDS 40.0%
AGACTCTCTGGACTTAAAGA+TGG - chr5_3:7884810-7884829 Msa0795870:CDS 40.0%
GAAACTCAAGGAGCTTATGA+TGG - chr5_3:7884884-7884903 Msa0795870:intron 40.0%
GCAATACAAGAACATGGAAG+AGG - chr5_3:7885303-7885322 Msa0795870:CDS 40.0%
ACAAGAACATGGAAGAGGAA+AGG - chr5_3:7885308-7885327 Msa0795870:CDS 40.0%
TGAAGCACAAGGTGAGAAAA+TGG - chr5_3:7885437-7885456 Msa0795870:CDS 40.0%
ATCAGAAAAGTAGCAGGAAG+TGG - chr5_3:7885538-7885557 Msa0795870:CDS 40.0%
CTGCTGAAACTCACTACAAT+GGG + chr5_3:7885615-7885634 None:intergenic 40.0%
ACTGCTGAAACTCACTACAA+TGG + chr5_3:7885616-7885635 None:intergenic 40.0%
AGTCGTACACAACTCAACAA+AGG + chr5_3:7885728-7885747 None:intergenic 40.0%
AGTTGGGAAAATGGGTCTAA+CGG + chr5_3:7884109-7884128 None:intergenic 40.0%
!! GAAGCTGGTCTTCAAAAACA+AGG - chr5_3:7884510-7884529 Msa0795870:CDS 40.0%
AAGATCTTCACTGACCCATT+TGG - chr5_3:7884548-7884567 Msa0795870:CDS 40.0%
TAGGACTCAACTCGAAGAAA+TGG - chr5_3:7884764-7884783 Msa0795870:CDS 40.0%
AGACTCTCTGGACTTAAAGA+TGG - chr5_3:7884810-7884829 Msa0795870:CDS 40.0%
GAAACTCAAGGAGCTTATGA+TGG - chr5_3:7884884-7884903 Msa0795870:intron 40.0%
GCAATACAAGAACATGGAAG+AGG - chr5_3:7885303-7885322 Msa0795870:CDS 40.0%
ACAAGAACATGGAAGAGGAA+AGG - chr5_3:7885308-7885327 Msa0795870:CDS 40.0%
TGAAGCACAAGGTGAGAAAA+TGG - chr5_3:7885437-7885456 Msa0795870:CDS 40.0%
ATCAGAAAAGTAGCAGGAAG+TGG - chr5_3:7885538-7885557 Msa0795870:CDS 40.0%
CTGCTGAAACTCACTACAAT+GGG + chr5_3:7885615-7885634 None:intergenic 40.0%
ACTGCTGAAACTCACTACAA+TGG + chr5_3:7885616-7885635 None:intergenic 40.0%
AGTCGTACACAACTCAACAA+AGG + chr5_3:7885728-7885747 None:intergenic 40.0%
! GAAAGAAGCGCAGATTGAGA+AGG + chr5_3:7884201-7884220 None:intergenic 45.0%
!! GCTGGTCTTCAAAAACAAGG+TGG - chr5_3:7884513-7884532 Msa0795870:CDS 45.0%
GCTGCTAATAGAAGACTCTC+TGG - chr5_3:7884798-7884817 Msa0795870:CDS 45.0%
! TGGCTTGCGTAAGAAACTCA+AGG - chr5_3:7884872-7884891 Msa0795870:intron 45.0%
! GGAGCTTATGATGGAGTTTC+AGG - chr5_3:7884893-7884912 Msa0795870:intron 45.0%
AGCCCCTGTTGTAACATACA+AGG + chr5_3:7885150-7885169 None:intergenic 45.0%
GGGAAGGCAATACAAGAACA+TGG - chr5_3:7885297-7885316 Msa0795870:CDS 45.0%
ACATGGAAGAGGAAAGGTTC+TGG - chr5_3:7885314-7885333 Msa0795870:CDS 45.0%
!! AGGAAAGGTTCTGGAAACTG+TGG - chr5_3:7885323-7885342 Msa0795870:CDS 45.0%
GCTGTTATGGTTGAAGCACA+AGG - chr5_3:7885426-7885445 Msa0795870:CDS 45.0%
! GAAAGAAGCGCAGATTGAGA+AGG + chr5_3:7884201-7884220 None:intergenic 45.0%
!! GCTGGTCTTCAAAAACAAGG+TGG - chr5_3:7884513-7884532 Msa0795870:CDS 45.0%
GCTGCTAATAGAAGACTCTC+TGG - chr5_3:7884798-7884817 Msa0795870:CDS 45.0%
! TGGCTTGCGTAAGAAACTCA+AGG - chr5_3:7884872-7884891 Msa0795870:intron 45.0%
! GGAGCTTATGATGGAGTTTC+AGG - chr5_3:7884893-7884912 Msa0795870:intron 45.0%
AGCCCCTGTTGTAACATACA+AGG + chr5_3:7885150-7885169 None:intergenic 45.0%
GGGAAGGCAATACAAGAACA+TGG - chr5_3:7885297-7885316 Msa0795870:CDS 45.0%
ACATGGAAGAGGAAAGGTTC+TGG - chr5_3:7885314-7885333 Msa0795870:CDS 45.0%
!! AGGAAAGGTTCTGGAAACTG+TGG - chr5_3:7885323-7885342 Msa0795870:CDS 45.0%
GCTGTTATGGTTGAAGCACA+AGG - chr5_3:7885426-7885445 Msa0795870:CDS 45.0%
GTATGTTACAACAGGGGCTG+AGG - chr5_3:7885151-7885170 Msa0795870:CDS 50.0%
AGGGGAACATGCTGATGAAG+AGG - chr5_3:7885230-7885249 Msa0795870:CDS 50.0%
AGCAGGAAGTGGATGTGCAT+TGG - chr5_3:7885549-7885568 Msa0795870:CDS 50.0%
GCAGGAAGTGGATGTGCATT+GGG - chr5_3:7885550-7885569 Msa0795870:CDS 50.0%
GTATGTTACAACAGGGGCTG+AGG - chr5_3:7885151-7885170 Msa0795870:CDS 50.0%
AGGGGAACATGCTGATGAAG+AGG - chr5_3:7885230-7885249 Msa0795870:CDS 50.0%
AGCAGGAAGTGGATGTGCAT+TGG - chr5_3:7885549-7885568 Msa0795870:CDS 50.0%
GCAGGAAGTGGATGTGCATT+GGG - chr5_3:7885550-7885569 Msa0795870:CDS 50.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 7884096 7885917 7884096 ID=Msa0795870;Name=Msa0795870
chr5_3 mRNA 7884096 7885917 7884096 ID=Msa0795870-mRNA-1;Parent=Msa0795870;Name=Msa0795870-mRNA-1;_AED=0.02;_eAED=0.02;_QI=204|1|1|1|0.5|0.33|3|276|319
chr5_3 exon 7884096 7884848 7884096 ID=Msa0795870-mRNA-1:exon:3244;Parent=Msa0795870-mRNA-1
chr5_3 exon 7885099 7885610 7885099 ID=Msa0795870-mRNA-1:exon:3243;Parent=Msa0795870-mRNA-1
chr5_3 exon 7885743 7885917 7885743 ID=Msa0795870-mRNA-1:exon:3242;Parent=Msa0795870-mRNA-1
chr5_3 five_prime_UTR 7885743 7885917 7885743 ID=Msa0795870-mRNA-1:five_prime_utr;Parent=Msa0795870-mRNA-1
chr5_3 five_prime_UTR 7885582 7885610 7885582 ID=Msa0795870-mRNA-1:five_prime_utr;Parent=Msa0795870-mRNA-1
chr5_3 CDS 7885099 7885581 7885099 ID=Msa0795870-mRNA-1:cds;Parent=Msa0795870-mRNA-1
chr5_3 CDS 7884372 7884848 7884372 ID=Msa0795870-mRNA-1:cds;Parent=Msa0795870-mRNA-1
chr5_3 three_prime_UTR 7884096 7884371 7884096 ID=Msa0795870-mRNA-1:three_prime_utr;Parent=Msa0795870-mRNA-1
Gene Sequence

>Msa0795870

ATGAATGATCTAATGACAAAATCATTCACCAACTATGTTGATCTAAAAAAAGCAGCTATGAAAGATGAAGTTGATTTAGAAGCTGGTCTTCAAAAACAAGGTGGTGTTGAATTAACAAGATCTTCACTGACCCATTTGGAAACTGATATGAATTTGTTCTTGGAAGAGGCTGAGAAAGTAAGAACAGAAATGGGTGAAATTCGCGATATACTAACAAAGCTTGAACAAGCAAATGAAGAGAGCAAGAGTCTTCACAAAACTGAAGCTTTGAAAGAATTGAGGGAAAGAATTAATACTGATATTGTAACAGTTTTGAAGAAAGCAAAGTGTATTAGGACTCAACTCGAAGAAATGGATCGTGCTAATGCTGCTAATAGAAGACTCTCTGGACTTAAAGATGGTTCACCAGCAATTTATAGAACTAGAATTGCTGTTACTAATGGCTTGCGTAAGAAACTCAAGGAGCTTATGATGGAGTTTCAGGGGCTGAGGCAGAAAATGATGAGCGAATACAAAGAAACAGTAGGGAGAAGATATTATACAGTGACAGGGGAACATGCTGATGAAGAGGTAATTGAGAAGATAATATCAAATGGAGATGATGAAAGTTTCTTAGGGAAGGCAATACAAGAACATGGAAGAGGAAAGGTTCTGGAAACTGTGGTTGAGATACAAGACAGACATGATGCTGCTAAAGAGATTGAGAAGAGTTTATTGGAACTTCATCAAATATTTTTGGATATGGCTGTTATGGTTGAAGCACAAGGTGAGAAAATGGATGATATTGAACATCATGTTCTTCATGCTTCTCATTATGTTAAAGATGGTACAAAGAATCTTCACGGTGCTAAACAGTATCAGAAAAGTAGCAGGAAGTGGATGTGCATTGGGATTATACTTTTGCTTATTCTGGTTCTCATCATTGTTATTCCCATTGTAGTGAGTTTCAGCAGTTCTTGA

Protein sequence

>Msa0795870

MNDLMTKSFTNYVDLKKAAMKDEVDLEAGLQKQGGVELTRSSLTHLETDMNLFLEEAEKVRTEMGEIRDILTKLEQANEESKSLHKTEALKELRERINTDIVTVLKKAKCIRTQLEEMDRANAANRRLSGLKDGSPAIYRTRIAVTNGLRKKLKELMMEFQGLRQKMMSEYKETVGRRYYTVTGEHADEEVIEKIISNGDDESFLGKAIQEHGRGKVLETVVEIQDRHDAAKEIEKSLLELHQIFLDMAVMVEAQGEKMDDIEHHVLHASHYVKDGTKNLHGAKQYQKSSRKWMCIGIILLLILVLIIVIPIVVSFSSS*