Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181330 | XP_003592284.1 | 100.000 | 449 | 0 | 0 | 1 | 449 | 1 | 449 | 0.0 | 946 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181330 | sp|P29516|TBB8_ARATH | 98.218 | 449 | 7 | 1 | 1 | 448 | 1 | 449 | 0.0 | 927 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181330 | G7IAN2 | 100.000 | 449 | 0 | 0 | 1 | 449 | 1 | 449 | 0.0 | 946 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0181330 | Msa0466520 | 0.820780 | 5.724006e-53 | -8.615850e-47 |
| Msa0181330 | Msa0557850 | 0.816825 | 4.529899e-52 | -8.615850e-47 |
| Msa0181330 | Msa0612520 | 0.802697 | 4.960329e-49 | -8.615850e-47 |
| Msa0181330 | Msa0690320 | 0.800199 | 1.612414e-48 | -8.615850e-47 |
| Msa0181330 | Msa0695560 | 0.816988 | 4.162305e-52 | -8.615850e-47 |
| Msa0181330 | Msa1406720 | 0.813818 | 2.111577e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181330 | MtrunA17_Chr1g0203181 | 100.000 | 449 | 0 | 0 | 1 | 449 | 1 | 449 | 0.0 | 946 |
| Msa0181330 | MtrunA17_Chr7g0255791 | 96.413 | 446 | 15 | 1 | 1 | 446 | 1 | 445 | 0.0 | 905 |
| Msa0181330 | MtrunA17_Chr4g0008361 | 97.674 | 430 | 10 | 0 | 1 | 430 | 1 | 430 | 0.0 | 863 |
| Msa0181330 | MtrunA17_Chr4g0008401 | 97.209 | 430 | 12 | 0 | 1 | 430 | 1 | 430 | 0.0 | 857 |
| Msa0181330 | MtrunA17_Chr2g0292921 | 96.047 | 430 | 17 | 0 | 1 | 430 | 1 | 430 | 0.0 | 850 |
| Msa0181330 | MtrunA17_Chr4g0051631 | 95.116 | 430 | 21 | 0 | 1 | 430 | 1 | 430 | 0.0 | 843 |
| Msa0181330 | MtrunA17_Chr4g0007371 | 95.370 | 432 | 18 | 1 | 1 | 430 | 1 | 432 | 0.0 | 842 |
| Msa0181330 | MtrunA17_Chr3g0142731 | 93.287 | 432 | 27 | 1 | 1 | 430 | 1 | 432 | 0.0 | 830 |
| Msa0181330 | MtrunA17_Chr8g0393021 | 91.422 | 443 | 37 | 1 | 1 | 442 | 1 | 443 | 0.0 | 827 |
| Msa0181330 | MtrunA17_Chr8g0386781 | 91.628 | 430 | 36 | 0 | 1 | 430 | 1 | 430 | 0.0 | 818 |
| Msa0181330 | MtrunA17_Chr8g0378821 | 41.475 | 434 | 244 | 2 | 1 | 424 | 1 | 434 | 4.65e-124 | 368 |
| Msa0181330 | MtrunA17_Chr3g0140821 | 41.705 | 434 | 243 | 2 | 1 | 424 | 1 | 434 | 1.34e-123 | 367 |
| Msa0181330 | MtrunA17_Chr4g0054511 | 41.475 | 434 | 244 | 2 | 1 | 424 | 1 | 434 | 4.83e-123 | 365 |
| Msa0181330 | MtrunA17_Chr1g0206881 | 41.244 | 434 | 245 | 2 | 1 | 424 | 1 | 434 | 6.12e-122 | 362 |
| Msa0181330 | MtrunA17_Chr6g0461281 | 40.402 | 448 | 256 | 2 | 1 | 437 | 1 | 448 | 8.21e-122 | 362 |
| Msa0181330 | MtrunA17_Chr7g0253411 | 40.553 | 434 | 248 | 2 | 1 | 424 | 1 | 434 | 9.03e-122 | 362 |
| Msa0181330 | MtrunA17_Chr2g0300671 | 37.045 | 440 | 264 | 4 | 1 | 431 | 1 | 436 | 6.16e-99 | 303 |
| Msa0181330 | MtrunA17_Chr2g0300491 | 36.667 | 450 | 274 | 3 | 1 | 442 | 1 | 447 | 8.56e-98 | 301 |
| Msa0181330 | MtrunA17_Chr7g0275431 | 35.160 | 438 | 267 | 7 | 2 | 423 | 3 | 439 | 7.62e-97 | 299 |
| Msa0181330 | MtrunA17_Chr3g0109241 | 31.852 | 135 | 84 | 1 | 269 | 395 | 4 | 138 | 3.04e-21 | 90.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181330 | AT5G23860.2 | 98.218 | 449 | 7 | 1 | 1 | 448 | 1 | 449 | 0.0 | 927 |
| Msa0181330 | AT5G23860.1 | 98.218 | 449 | 7 | 1 | 1 | 448 | 1 | 449 | 0.0 | 927 |
| Msa0181330 | AT5G62690.1 | 97.105 | 449 | 11 | 2 | 1 | 448 | 1 | 448 | 0.0 | 915 |
| Msa0181330 | AT5G62700.1 | 97.105 | 449 | 11 | 2 | 1 | 448 | 1 | 448 | 0.0 | 915 |
| Msa0181330 | AT2G29550.1 | 96.752 | 431 | 14 | 0 | 1 | 431 | 1 | 431 | 0.0 | 855 |
| Msa0181330 | AT5G12250.1 | 96.977 | 430 | 13 | 0 | 1 | 430 | 1 | 430 | 0.0 | 854 |
| Msa0181330 | AT1G75780.1 | 94.200 | 431 | 24 | 1 | 1 | 430 | 1 | 431 | 0.0 | 838 |
| Msa0181330 | AT1G20010.1 | 93.735 | 431 | 26 | 1 | 1 | 430 | 1 | 431 | 0.0 | 835 |
| Msa0181330 | AT4G20890.1 | 93.488 | 430 | 28 | 0 | 1 | 430 | 1 | 430 | 0.0 | 829 |
| Msa0181330 | AT5G44340.1 | 92.558 | 430 | 32 | 0 | 1 | 430 | 1 | 430 | 0.0 | 823 |
| Msa0181330 | AT5G19780.1 | 41.475 | 434 | 244 | 2 | 1 | 424 | 1 | 434 | 3.93e-124 | 368 |
| Msa0181330 | AT5G19770.1 | 41.475 | 434 | 244 | 2 | 1 | 424 | 1 | 434 | 3.93e-124 | 368 |
| Msa0181330 | AT1G64740.1 | 41.014 | 434 | 246 | 2 | 1 | 424 | 1 | 434 | 1.34e-123 | 367 |
| Msa0181330 | AT4G14960.2 | 41.705 | 434 | 243 | 2 | 1 | 424 | 1 | 434 | 2.20e-122 | 364 |
| Msa0181330 | AT1G50010.1 | 41.475 | 434 | 244 | 2 | 1 | 424 | 1 | 434 | 1.50e-121 | 362 |
| Msa0181330 | AT1G04820.1 | 41.475 | 434 | 244 | 2 | 1 | 424 | 1 | 434 | 1.50e-121 | 362 |
| Msa0181330 | AT4G14960.1 | 41.710 | 386 | 215 | 2 | 1 | 376 | 1 | 386 | 9.44e-103 | 313 |
| Msa0181330 | AT3G61650.1 | 35.388 | 438 | 266 | 7 | 2 | 423 | 3 | 439 | 5.17e-97 | 300 |
| Msa0181330 | AT5G05620.1 | 35.388 | 438 | 266 | 7 | 2 | 423 | 3 | 439 | 5.34e-97 | 300 |
Find 140 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTTATTATTCATGTTAA+TGG | 0.124820 | 1_4:+69525061 | Msa0181330:three_prime_UTR |
| AGCTTGGAGTAGTGAGTTTA+AGG | 0.176825 | 1_4:-69524022 | None:intergenic |
| CCCTCGGTTGCATTTCTTCA+TGG | 0.185531 | 1_4:+69524289 | Msa0181330:CDS |
| ACCAAATCGGAGCAAAATTC+TGG | 0.217661 | 1_4:+69522337 | Msa0181330:CDS |
| GCTTTCTTGCATTGGTATAC+TGG | 0.248415 | 1_4:+69524686 | Msa0181330:CDS |
| ACCTTTCGCCCAGTTGTTTC+CGG | 0.265804 | 1_4:-69522586 | None:intergenic |
| AAGGAGAATGAGTGAAGTTC+TGG | 0.274725 | 1_4:-69522184 | None:intergenic |
| CTTGGTGGTGGTACTGGTTC+TGG | 0.275474 | 1_4:+69523795 | Msa0181330:CDS |
| CATCTATTCAAGAGATGTTT+AGG | 0.284618 | 1_4:+69524624 | Msa0181330:CDS |
| CCCACCAACTGGTCTTAAAA+TGG | 0.292903 | 1_4:+69524577 | Msa0181330:CDS |
| GAACTCAGATCTTCGCAAAT+TGG | 0.295990 | 1_4:+69524247 | Msa0181330:CDS |
| AACGTAACCGTGACGAGTTT+TGG | 0.298191 | 1_4:-69522230 | None:intergenic |
| AGATGAGGAGGAAGAAGTTC+AGG | 0.309205 | 1_4:+69524823 | Msa0181330:CDS |
| AACCATTAACATGAATAATA+AGG | 0.316022 | 1_4:-69525063 | None:intergenic |
| CACTCCCTTGGTGGTGGTAC+TGG | 0.316198 | 1_4:+69523789 | Msa0181330:CDS |
| CGCCCAGTTGTTTCCGGCAC+CGG | 0.324024 | 1_4:-69522580 | None:intergenic |
| GACAGTGGATTTCACATTGT+TGG | 0.328696 | 1_4:-69524546 | None:intergenic |
| CAGTAGCATCTTGGTATTGC+TGG | 0.336251 | 1_4:-69524775 | None:intergenic |
| CATGAATAATAAGGAAATAT+AGG | 0.338724 | 1_4:-69525054 | None:intergenic |
| TCTTAATCTTACAACTAAAC+TGG | 0.340791 | 1_4:+69525135 | Msa0181330:three_prime_UTR |
| TCTTCGAATCCCACATCTGC+TGG | 0.346684 | 1_4:-69524379 | None:intergenic |
| GGATCTAGAGCCAGGGACTA+TGG | 0.360352 | 1_4:+69522494 | Msa0181330:CDS |
| GGTGGTACTGGTTCTGGAAT+GGG | 0.369152 | 1_4:+69523801 | Msa0181330:CDS |
| TCATTGTGGCCGAAATTAGA+TGG | 0.369833 | 1_4:-69524187 | None:intergenic |
| AGTCCGGTGCCGGAAACAAC+TGG | 0.370377 | 1_4:+69522577 | Msa0181330:CDS |
| GGGGTACTGGATTTGTTGTT+CGG | 0.380345 | 1_4:+69524970 | Msa0181330:three_prime_UTR |
| GAGAATTGTGATTGTCTTCA+AGG | 0.384367 | 1_4:+69522669 | Msa0181330:CDS |
| AGATCTGAACCATCTAATTT+CGG | 0.387444 | 1_4:+69524178 | Msa0181330:CDS |
| ACAGTGGATTTCACATTGTT+GGG | 0.387667 | 1_4:-69524545 | None:intergenic |
| TGCTGATGAATGCATGGTTC+TGG | 0.393880 | 1_4:+69523965 | Msa0181330:CDS |
| CGGTTGCATTTCTTCATGGT+GGG | 0.417830 | 1_4:+69524293 | Msa0181330:CDS |
| CAGGTTTGCCACTCCCTTGG+TGG | 0.418895 | 1_4:+69523780 | Msa0181330:CDS |
| ATTTGACAACAAATGAAAAC+AGG | 0.419191 | 1_4:-69525027 | None:intergenic |
| TTTCAGGTTTGCCACTCCCT+TGG | 0.428262 | 1_4:+69523777 | Msa0181330:CDS |
| GTTGTTCCCTTGGTACCTTC+CGG | 0.430541 | 1_4:-69522394 | None:intergenic |
| TGGTGGTACTGGTTCTGGAA+TGG | 0.433580 | 1_4:+69523800 | Msa0181330:CDS |
| GTTCTCATGGATCTAGAGCC+AGG | 0.435151 | 1_4:+69522486 | Msa0181330:CDS |
| AAAGTAAGCATCATTCGATC+AGG | 0.435587 | 1_4:-69523858 | None:intergenic |
| GTTGAAGATCGTTGTTCCCT+TGG | 0.436500 | 1_4:-69522404 | None:intergenic |
| TTATTATTCATGTTAATGGT+TGG | 0.436927 | 1_4:+69525065 | Msa0181330:three_prime_UTR |
| CTCGTGGTTCACAGCAGTAC+AGG | 0.444979 | 1_4:+69524333 | Msa0181330:CDS |
| TGAGTTTGAAGAACGAGTTT+TGG | 0.445375 | 1_4:-69522266 | None:intergenic |
| GCTTGGAGTAGTGAGTTTAA+GGG | 0.448732 | 1_4:-69524021 | None:intergenic |
| ATTCGGTGCTTGATGTTGTT+AGG | 0.449556 | 1_4:+69522637 | Msa0181330:CDS |
| GTCTGCGACATCCCACCAAC+TGG | 0.453884 | 1_4:+69524566 | Msa0181330:CDS |
| ACATGTTGTCTTCGATTCCC+TGG | 0.455659 | 1_4:+69524218 | Msa0181330:CDS |
| GGTTGCCGCATTGTCCTCCT+TGG | 0.459315 | 1_4:-69522317 | None:intergenic |
| GCAGAAAAGCTTTCTTGCAT+TGG | 0.466464 | 1_4:+69524678 | Msa0181330:CDS |
| TCAATCTCATTCCTTTCCCT+CGG | 0.470724 | 1_4:+69524273 | Msa0181330:CDS |
| CACATCTGCTGGGTCAGCTC+AGG | 0.473481 | 1_4:-69524368 | None:intergenic |
| CTCCGTGTTCCCATCTCCTA+AGG | 0.475795 | 1_4:+69523881 | Msa0181330:CDS |
| CTTCATCTGCAGTAGCATCT+TGG | 0.477927 | 1_4:-69524784 | None:intergenic |
| CGTTCCTAGAGCTGTTCTCA+TGG | 0.485327 | 1_4:+69522473 | Msa0181330:CDS |
| CATCTGCTCATCAACCTCCT+TGG | 0.489308 | 1_4:-69524477 | None:intergenic |
| TGGAGAGGGTATGGATGAGA+TGG | 0.489491 | 1_4:+69524706 | Msa0181330:CDS |
| CCAAATCGGAGCAAAATTCT+GGG | 0.491574 | 1_4:+69522338 | Msa0181330:CDS |
| TTGGTATACTGGAGAGGGTA+TGG | 0.494465 | 1_4:+69524697 | Msa0181330:CDS |
| GGACAATGCGGCAACCAAAT+CGG | 0.494756 | 1_4:+69522324 | Msa0181330:CDS |
| GTTTGCCACTCCCTTGGTGG+TGG | 0.498542 | 1_4:+69523783 | Msa0181330:CDS |
| GTGTCAGATACCTTAGGAGA+TGG | 0.506140 | 1_4:-69523891 | None:intergenic |
| GAAGTTGTGTGCGCTGAGCA+CGG | 0.506720 | 1_4:+69522360 | Msa0181330:CDS |
| GGCCGGAAAATCTGACCGTA+TGG | 0.507200 | 1_4:-69522534 | None:intergenic |
| CTGAGCTGACCCAGCAGATG+TGG | 0.508297 | 1_4:+69524369 | Msa0181330:CDS |
| ACAGAGAGTGTAGCGTTGTA+AGG | 0.511785 | 1_4:-69523924 | None:intergenic |
| AGGAGCTGAGTTGATTGATT+CGG | 0.521449 | 1_4:+69522620 | Msa0181330:CDS |
| ATTCATCATACTTTGTTGAG+TGG | 0.522858 | 1_4:+69524519 | Msa0181330:CDS |
| ACTATGGATAGCGTCAGATC+TGG | 0.524723 | 1_4:+69522510 | Msa0181330:CDS |
| GTCAAATAACGACCGTGGCG+AGG | 0.525061 | 1_4:-69524422 | None:intergenic |
| TGAGGAGGAAGAAGTTCAGG+AGG | 0.525475 | 1_4:+69524826 | Msa0181330:CDS |
| TTGCATTGGTATACTGGAGA+GGG | 0.526307 | 1_4:+69524692 | Msa0181330:CDS |
| GGGGTATGACTATGAAGATG+AGG | 0.526329 | 1_4:+69524808 | Msa0181330:CDS |
| CTTAAACAGTAGTATTGTGA+AGG | 0.527385 | 1_4:+69524855 | Msa0181330:exon |
| CATCAGCATTCTCAACAAGT+TGG | 0.528768 | 1_4:-69523950 | None:intergenic |
| AGATCTGAGTTCAATTGACC+AGG | 0.531971 | 1_4:-69524236 | None:intergenic |
| CTTCGAATCCCACATCTGCT+GGG | 0.532809 | 1_4:-69524378 | None:intergenic |
| ACAACAGTGTCAGATACCTT+AGG | 0.533881 | 1_4:-69523897 | None:intergenic |
| AAGAAATGCAACCGAGGGAA+AGG | 0.535472 | 1_4:-69524284 | None:intergenic |
| GAAGAAAGTGACTTTATAGC+GGG | 0.540763 | 1_4:-69522131 | None:intergenic |
| GGTGCTTGATGTTGTTAGGA+AGG | 0.544190 | 1_4:+69522641 | Msa0181330:CDS |
| AAGTTGTGTGCGCTGAGCAC+GGG | 0.549539 | 1_4:+69522361 | Msa0181330:CDS |
| AGCGTCAGATCTGGTCCATA+CGG | 0.552062 | 1_4:+69522519 | Msa0181330:CDS |
| TACTACAACGAAGCGAGTTG+TGG | 0.552610 | 1_4:+69522444 | Msa0181330:CDS |
| GCCGGAAACAACTGGGCGAA+AGG | 0.556278 | 1_4:+69522585 | Msa0181330:CDS |
| GAGGGTAAGTGAGCAATTCA+CGG | 0.558270 | 1_4:+69524646 | Msa0181330:CDS |
| TCGGTTGCATTTCTTCATGG+TGG | 0.559141 | 1_4:+69524292 | Msa0181330:CDS |
| GAGTAGTGAGTTTAAGGGTG+CGG | 0.561131 | 1_4:-69524016 | None:intergenic |
| AGATCCATGAGAACAGCTCT+AGG | 0.561201 | 1_4:-69522477 | None:intergenic |
| AGATGCTACTGCAGATGAAG+AGG | 0.562679 | 1_4:+69524787 | Msa0181330:CDS |
| CTTGCATTGGTATACTGGAG+AGG | 0.565550 | 1_4:+69524691 | Msa0181330:CDS |
| CTAATTTCGGCCACAATGAG+TGG | 0.567054 | 1_4:+69524191 | Msa0181330:CDS |
| GTATGACTATGAAGATGAGG+AGG | 0.571612 | 1_4:+69524811 | Msa0181330:CDS |
| CAGCATTCTCAACAAGTTGG+TGG | 0.573199 | 1_4:-69523947 | None:intergenic |
| TTTGCCCCACTCACTTCTCG+TGG | 0.577800 | 1_4:+69524317 | Msa0181330:CDS |
| TCGTGGTTCACAGCAGTACA+GGG | 0.585028 | 1_4:+69524334 | Msa0181330:CDS |
| CTATTCAAGAGATGTTTAGG+AGG | 0.585067 | 1_4:+69524627 | Msa0181330:CDS |
| GAGCACGGGATCGACTCCAC+CGG | 0.585627 | 1_4:+69522375 | Msa0181330:CDS |
| TGGTGGGATGTCGCAGACAG+TGG | 0.587878 | 1_4:-69524561 | None:intergenic |
| GCTCATCTTACCACGGAACA+TGG | 0.591088 | 1_4:-69524453 | None:intergenic |
| CGTGAGATTCTTCACATCCA+AGG | 0.593333 | 1_4:+69522300 | Msa0181330:CDS |
| GATGCTACTGCAGATGAAGA+GGG | 0.594540 | 1_4:+69524788 | Msa0181330:CDS |
| CAGTACCACCACCAAGGGAG+TGG | 0.594965 | 1_4:-69523788 | None:intergenic |
| GACTCCACCGGAAGGTACCA+AGG | 0.596275 | 1_4:+69522387 | Msa0181330:CDS |
| GTCCGGTGCCGGAAACAACT+GGG | 0.596726 | 1_4:+69522578 | Msa0181330:CDS |
| CTGACGCTATCCATAGTCCC+TGG | 0.596836 | 1_4:-69522504 | None:intergenic |
| TGCGCTGCTGATCCTCGCCA+CGG | 0.597098 | 1_4:+69524410 | Msa0181330:CDS |
| TACCTTAGGAGATGGGAACA+CGG | 0.597343 | 1_4:-69523883 | None:intergenic |
| ACAGCATCTGCCATGTTCCG+TGG | 0.598969 | 1_4:+69524443 | Msa0181330:CDS |
| TTCTCATGGATCTAGAGCCA+GGG | 0.599895 | 1_4:+69522487 | Msa0181330:CDS |
| TTAAACAGTAGTATTGTGAA+GGG | 0.600837 | 1_4:+69524856 | Msa0181330:exon |
| TGTCAGATACCTTAGGAGAT+GGG | 0.602090 | 1_4:-69523890 | None:intergenic |
| ACATGTAACACCACTCATTG+TGG | 0.605465 | 1_4:-69524201 | None:intergenic |
| GTTCCCTTGGTACCTTCCGG+TGG | 0.611432 | 1_4:-69522391 | None:intergenic |
| AGAACCAGTACCACCACCAA+GGG | 0.618252 | 1_4:-69523793 | None:intergenic |
| TATTCAAGAGATGTTTAGGA+GGG | 0.623258 | 1_4:+69524628 | Msa0181330:CDS |
| TGAGCTGACCCAGCAGATGT+GGG | 0.624406 | 1_4:+69524370 | Msa0181330:CDS |
| TCTCTCTCCAAAACTCGTCA+CGG | 0.627180 | 1_4:+69522223 | Msa0181330:five_prime_UTR |
| CCATGAAGAAATGCAACCGA+GGG | 0.631936 | 1_4:-69524289 | None:intergenic |
| AAGTAAGCATCATTCGATCA+GGG | 0.636592 | 1_4:-69523857 | None:intergenic |
| TGAGAATGCTGATGAATGCA+TGG | 0.647401 | 1_4:+69523959 | Msa0181330:CDS |
| AGAAGAAAGTGACTTTATAG+CGG | 0.648023 | 1_4:-69522132 | None:intergenic |
| GCTTGATGTTGTTAGGAAGG+AGG | 0.649257 | 1_4:+69522644 | Msa0181330:CDS |
| ACCATGAAGAAATGCAACCG+AGG | 0.650014 | 1_4:-69524290 | None:intergenic |
| GCGAAAGGTCACTACACTGA+AGG | 0.656934 | 1_4:+69522600 | Msa0181330:CDS |
| GTGAACCACGAGAAGTGAGT+GGG | 0.660953 | 1_4:-69524322 | None:intergenic |
| CACATCCAAGGAGGACAATG+CGG | 0.662506 | 1_4:+69522312 | Msa0181330:CDS |
| ACGGGATCGACTCCACCGGA+AGG | 0.666784 | 1_4:+69522379 | Msa0181330:CDS |
| CAGAACCAGTACCACCACCA+AGG | 0.675091 | 1_4:-69523794 | None:intergenic |
| ATGCTACTGCAGATGAAGAG+GGG | 0.676889 | 1_4:+69524789 | Msa0181330:CDS |
| TGTGAACCACGAGAAGTGAG+TGG | 0.677800 | 1_4:-69524323 | None:intergenic |
| ACTCCACCGGAAGGTACCAA+GGG | 0.680036 | 1_4:+69522388 | Msa0181330:CDS |
| GATCTGAGTTCAATTGACCA+GGG | 0.680125 | 1_4:-69524235 | None:intergenic |
| CCTTGGTGCTCATCTTACCA+CGG | 0.683046 | 1_4:-69524460 | None:intergenic |
| TTTGATTTCTAAGATCAGGG+AGG | 0.713644 | 1_4:+69523830 | Msa0181330:CDS |
| TGAACCACGAGAAGTGAGTG+GGG | 0.716024 | 1_4:-69524321 | None:intergenic |
| ATGCTGTCAAATAACGACCG+TGG | 0.720715 | 1_4:-69524427 | None:intergenic |
| CCGTGGTAAGATGAGCACCA+AGG | 0.721405 | 1_4:+69524460 | Msa0181330:CDS |
| ATTGCTGGTACTCTGAGACA+AGG | 0.726640 | 1_4:-69524760 | None:intergenic |
| TGGTAAGATGAGCACCAAGG+AGG | 0.729589 | 1_4:+69524463 | Msa0181330:CDS |
| GAGATTCTTCACATCCAAGG+AGG | 0.735981 | 1_4:+69522303 | Msa0181330:CDS |
| GGGATGTAACGAGTATGCGA+CGG | 0.754652 | 1_4:-69522111 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATGTTTATTTAACAATTTA+GGG | + | chr1_4:69523019-69523038 | Msa0181330:intron | 15.0% |
| !!! | ATTAGTTATACAAGTTTTTA+AGG | - | chr1_4:69523375-69523394 | None:intergenic | 15.0% |
| !! | AAAAACTTGTATAACTAATT+AGG | + | chr1_4:69523376-69523395 | Msa0181330:intron | 15.0% |
| !! | GCATGTTTATTTAACAATTT+AGG | + | chr1_4:69523018-69523037 | Msa0181330:intron | 20.0% |
| !!! | TTGATAATCAGATTTGATAT+GGG | + | chr1_4:69523414-69523433 | Msa0181330:intron | 20.0% |
| !! | TATATGTGTTGTGATAAATT+AGG | + | chr1_4:69523590-69523609 | Msa0181330:intron | 20.0% |
| !! | AAGTAAACAAAACAAAACTA+AGG | - | chr1_4:69523716-69523735 | None:intergenic | 20.0% |
| !!! | TTGTTTTGTTTACTTGAATT+TGG | + | chr1_4:69523721-69523740 | Msa0181330:intron | 20.0% |
| !!! | TGTTTTGTTTACTTGAATTT+GGG | + | chr1_4:69523722-69523741 | Msa0181330:intron | 20.0% |
| !! | ATTATTAGCAAAAACTTAAC+AGG | - | chr1_4:69524076-69524095 | None:intergenic | 20.0% |
| !! | CATGAATAATAAGGAAATAT+AGG | - | chr1_4:69525057-69525076 | None:intergenic | 20.0% |
| !! | TTCCTTATTATTCATGTTAA+TGG | + | chr1_4:69525061-69525080 | Msa0181330:three_prime_UTR | 20.0% |
| !! | AACCATTAACATGAATAATA+AGG | - | chr1_4:69525066-69525085 | None:intergenic | 20.0% |
| !! | TTATTATTCATGTTAATGGT+TGG | + | chr1_4:69525065-69525084 | Msa0181330:three_prime_UTR | 20.0% |
| !!! | GTTGATAATCAGATTTGATA+TGG | + | chr1_4:69523413-69523432 | Msa0181330:intron | 25.0% |
| !! | ATTTGAAGTGCTATAGTAAT+AGG | + | chr1_4:69523466-69523485 | Msa0181330:intron | 25.0% |
| ! | TTAGAAGTTGTGATATAACT+TGG | + | chr1_4:69523657-69523676 | Msa0181330:intron | 25.0% |
| !!! | ACTTTTGATTTCTAAGATCA+GGG | + | chr1_4:69523827-69523846 | Msa0181330:CDS | 25.0% |
| !!! | AAAATGGCTTCTACTTTTAT+TGG | + | chr1_4:69524593-69524612 | Msa0181330:CDS | 25.0% |
| ! | TTAAACAGTAGTATTGTGAA+GGG | + | chr1_4:69524856-69524875 | Msa0181330:exon | 25.0% |
| ! | ATTTGACAACAAATGAAAAC+AGG | - | chr1_4:69525030-69525049 | None:intergenic | 25.0% |
| ! | TCTTAATCTTACAACTAAAC+TGG | + | chr1_4:69525135-69525154 | Msa0181330:three_prime_UTR | 25.0% |
| AGAAGAAAGTGACTTTATAG+CGG | - | chr1_4:69522135-69522154 | None:intergenic | 30.0% | |
| ACACAAAAATTCCTAGATCA+AGG | - | chr1_4:69522915-69522934 | None:intergenic | 30.0% | |
| ACAAGTTATTCAAAACACAG+TGG | - | chr1_4:69523534-69523553 | None:intergenic | 30.0% | |
| ! | TTAGTATGTAAGAGCATGTT+TGG | + | chr1_4:69523563-69523582 | Msa0181330:intron | 30.0% |
| ! | TGAATTTGGGATTTCTAACA+TGG | + | chr1_4:69523735-69523754 | Msa0181330:intron | 30.0% |
| !!! | CACTTTTGATTTCTAAGATC+AGG | + | chr1_4:69523826-69523845 | Msa0181330:CDS | 30.0% |
| AACTTAACAGGCAAAAACAT+AGG | - | chr1_4:69524064-69524083 | None:intergenic | 30.0% | |
| AGATCTGAACCATCTAATTT+CGG | + | chr1_4:69524178-69524197 | Msa0181330:CDS | 30.0% | |
| ATTCATCATACTTTGTTGAG+TGG | + | chr1_4:69524519-69524538 | Msa0181330:CDS | 30.0% | |
| CATCTATTCAAGAGATGTTT+AGG | + | chr1_4:69524624-69524643 | Msa0181330:CDS | 30.0% | |
| TATTCAAGAGATGTTTAGGA+GGG | + | chr1_4:69524628-69524647 | Msa0181330:CDS | 30.0% | |
| CTTAAACAGTAGTATTGTGA+AGG | + | chr1_4:69524855-69524874 | Msa0181330:exon | 30.0% | |
| GAAGAAAGTGACTTTATAGC+GGG | - | chr1_4:69522134-69522153 | None:intergenic | 35.0% | |
| ! | TGAGTTTGAAGAACGAGTTT+TGG | - | chr1_4:69522269-69522288 | None:intergenic | 35.0% |
| TGTCCAAAAACGAAGTTATC+CGG | - | chr1_4:69522558-69522577 | None:intergenic | 35.0% | |
| GAGAATTGTGATTGTCTTCA+AGG | + | chr1_4:69522669-69522688 | Msa0181330:CDS | 35.0% | |
| !!! | AGAGTTTTGAACCTTGATCT+AGG | + | chr1_4:69523214-69523233 | Msa0181330:intron | 35.0% |
| ACACAGAAATTCCTAGATCA+AGG | - | chr1_4:69523228-69523247 | None:intergenic | 35.0% | |
| AATCAGATTTGATATGGGAG+TGG | + | chr1_4:69523419-69523438 | Msa0181330:intron | 35.0% | |
| ! | CATGGTTTTCAGAATCTTTC+AGG | + | chr1_4:69523753-69523772 | Msa0181330:intron | 35.0% |
| !!! | TCAGAATCTTTCAGGTTTTC+AGG | + | chr1_4:69523761-69523780 | Msa0181330:intron | 35.0% |
| !! | TTTGATTTCTAAGATCAGGG+AGG | + | chr1_4:69523830-69523849 | Msa0181330:CDS | 35.0% |
| AAGTAAGCATCATTCGATCA+GGG | - | chr1_4:69523860-69523879 | None:intergenic | 35.0% | |
| AAAGTAAGCATCATTCGATC+AGG | - | chr1_4:69523861-69523880 | None:intergenic | 35.0% | |
| ATTATGATGAACTCACAGCT+TGG | - | chr1_4:69524041-69524060 | None:intergenic | 35.0% | |
| ! | AAATTGAGCCTTGTGTTGTT+TGG | + | chr1_4:69524145-69524164 | Msa0181330:intron | 35.0% |
| ! | ACAGTGGATTTCACATTGTT+GGG | - | chr1_4:69524548-69524567 | None:intergenic | 35.0% |
| CTATTCAAGAGATGTTTAGG+AGG | + | chr1_4:69524627-69524646 | Msa0181330:CDS | 35.0% | |
| ! | AATGCAAGAAAGCTTTTCTG+CGG | - | chr1_4:69524679-69524698 | None:intergenic | 35.0% |
| AAGGAGAATGAGTGAAGTTC+TGG | - | chr1_4:69522187-69522206 | None:intergenic | 40.0% | |
| ACCAAATCGGAGCAAAATTC+TGG | + | chr1_4:69522337-69522356 | Msa0181330:CDS | 40.0% | |
| CCAAATCGGAGCAAAATTCT+GGG | + | chr1_4:69522338-69522357 | Msa0181330:CDS | 40.0% | |
| !! | AACTTCGTTTTTGGACAGTC+CGG | + | chr1_4:69522561-69522580 | Msa0181330:CDS | 40.0% |
| !! | AGGAGCTGAGTTGATTGATT+CGG | + | chr1_4:69522620-69522639 | Msa0181330:CDS | 40.0% |
| !! | ATTCGGTGCTTGATGTTGTT+AGG | + | chr1_4:69522637-69522656 | Msa0181330:CDS | 40.0% |
| TGTCAGATACCTTAGGAGAT+GGG | - | chr1_4:69523893-69523912 | None:intergenic | 40.0% | |
| ACAACAGTGTCAGATACCTT+AGG | - | chr1_4:69523900-69523919 | None:intergenic | 40.0% | |
| CATCAGCATTCTCAACAAGT+TGG | - | chr1_4:69523953-69523972 | None:intergenic | 40.0% | |
| TGAGAATGCTGATGAATGCA+TGG | + | chr1_4:69523959-69523978 | Msa0181330:CDS | 40.0% | |
| GCTTGGAGTAGTGAGTTTAA+GGG | - | chr1_4:69524024-69524043 | None:intergenic | 40.0% | |
| AGCTTGGAGTAGTGAGTTTA+AGG | - | chr1_4:69524025-69524044 | None:intergenic | 40.0% | |
| AACTGCAACCAAACAACACA+AGG | - | chr1_4:69524156-69524175 | None:intergenic | 40.0% | |
| !! | TTGTGTTGTTTGGTTGCAGT+TGG | + | chr1_4:69524155-69524174 | Msa0181330:intron | 40.0% |
| TCATTGTGGCCGAAATTAGA+TGG | - | chr1_4:69524190-69524209 | None:intergenic | 40.0% | |
| ACATGTAACACCACTCATTG+TGG | - | chr1_4:69524204-69524223 | None:intergenic | 40.0% | |
| GATCTGAGTTCAATTGACCA+GGG | - | chr1_4:69524238-69524257 | None:intergenic | 40.0% | |
| AGATCTGAGTTCAATTGACC+AGG | - | chr1_4:69524239-69524258 | None:intergenic | 40.0% | |
| GAACTCAGATCTTCGCAAAT+TGG | + | chr1_4:69524247-69524266 | Msa0181330:CDS | 40.0% | |
| TCAATCTCATTCCTTTCCCT+CGG | + | chr1_4:69524273-69524292 | Msa0181330:CDS | 40.0% | |
| ! | GACAGTGGATTTCACATTGT+TGG | - | chr1_4:69524549-69524568 | None:intergenic | 40.0% |
| !!! | CCATTTTAAGACCAGTTGGT+GGG | - | chr1_4:69524580-69524599 | None:intergenic | 40.0% |
| !!! | GAAGCCATTTTAAGACCAGT+TGG | - | chr1_4:69524584-69524603 | None:intergenic | 40.0% |
| GCAGAAAAGCTTTCTTGCAT+TGG | + | chr1_4:69524678-69524697 | Msa0181330:CDS | 40.0% | |
| ! | GCTTTCTTGCATTGGTATAC+TGG | + | chr1_4:69524686-69524705 | Msa0181330:CDS | 40.0% |
| ! | TTGCATTGGTATACTGGAGA+GGG | + | chr1_4:69524692-69524711 | Msa0181330:CDS | 40.0% |
| GTATGACTATGAAGATGAGG+AGG | + | chr1_4:69524811-69524830 | Msa0181330:CDS | 40.0% | |
| !! | GAAAAAGGTATTCAGGTTGG+GGG | - | chr1_4:69524949-69524968 | None:intergenic | 40.0% |
| !! | CGAAAAAGGTATTCAGGTTG+GGG | - | chr1_4:69524950-69524969 | None:intergenic | 40.0% |
| !! | CCGAAAAAGGTATTCAGGTT+GGG | - | chr1_4:69524951-69524970 | None:intergenic | 40.0% |
| ! | CCCAACCTGAATACCTTTTT+CGG | + | chr1_4:69524948-69524967 | Msa0181330:three_prime_UTR | 40.0% |
| ! | CCAACCTGAATACCTTTTTC+GGG | + | chr1_4:69524949-69524968 | Msa0181330:three_prime_UTR | 40.0% |
| !! | CAACCTGAATACCTTTTTCG+GGG | + | chr1_4:69524950-69524969 | Msa0181330:three_prime_UTR | 40.0% |
| !!! | AACCTGAATACCTTTTTCGG+GGG | + | chr1_4:69524951-69524970 | Msa0181330:three_prime_UTR | 40.0% |
| !!! | CGGCTTGCTATTGTAGTTTT+AGG | + | chr1_4:69524990-69525009 | Msa0181330:three_prime_UTR | 40.0% |
| AGAGAGAGAGAGAGAAAGGA+AGG | - | chr1_4:69522206-69522225 | None:intergenic | 45.0% | |
| AGAGAGAGAGAGAGAGAGAA+AGG | - | chr1_4:69522210-69522229 | None:intergenic | 45.0% | |
| TCTCTCTCCAAAACTCGTCA+CGG | + | chr1_4:69522223-69522242 | Msa0181330:five_prime_UTR | 45.0% | |
| ! | AACGTAACCGTGACGAGTTT+TGG | - | chr1_4:69522233-69522252 | None:intergenic | 45.0% |
| CGTGAGATTCTTCACATCCA+AGG | + | chr1_4:69522300-69522319 | Msa0181330:CDS | 45.0% | |
| GAGATTCTTCACATCCAAGG+AGG | + | chr1_4:69522303-69522322 | Msa0181330:CDS | 45.0% | |
| ! | CCCAGAATTTTGCTCCGATT+TGG | - | chr1_4:69522341-69522360 | None:intergenic | 45.0% |
| GTTGAAGATCGTTGTTCCCT+TGG | - | chr1_4:69522407-69522426 | None:intergenic | 45.0% | |
| TACTACAACGAAGCGAGTTG+TGG | + | chr1_4:69522444-69522463 | Msa0181330:CDS | 45.0% | |
| AGATCCATGAGAACAGCTCT+AGG | - | chr1_4:69522480-69522499 | None:intergenic | 45.0% | |
| ! | TTCTCATGGATCTAGAGCCA+GGG | + | chr1_4:69522487-69522506 | Msa0181330:CDS | 45.0% |
| ACTATGGATAGCGTCAGATC+TGG | + | chr1_4:69522510-69522529 | Msa0181330:CDS | 45.0% | |
| ! | GTCCATACGGTCAGATTTTC+CGG | + | chr1_4:69522532-69522551 | Msa0181330:CDS | 45.0% |
| CAAAAACGAAGTTATCCGGC+CGG | - | chr1_4:69522554-69522573 | None:intergenic | 45.0% | |
| GGTGCTTGATGTTGTTAGGA+AGG | + | chr1_4:69522641-69522660 | Msa0181330:CDS | 45.0% | |
| GCTTGATGTTGTTAGGAAGG+AGG | + | chr1_4:69522644-69522663 | Msa0181330:CDS | 45.0% | |
| AGAGAATCGAGCCTTGATCT+AGG | + | chr1_4:69522901-69522920 | Msa0181330:intron | 45.0% | |
| TACCTTAGGAGATGGGAACA+CGG | - | chr1_4:69523886-69523905 | None:intergenic | 45.0% | |
| GTGTCAGATACCTTAGGAGA+TGG | - | chr1_4:69523894-69523913 | None:intergenic | 45.0% | |
| ! | ACAGAGAGTGTAGCGTTGTA+AGG | - | chr1_4:69523927-69523946 | None:intergenic | 45.0% |
| ! | CAGCATTCTCAACAAGTTGG+TGG | - | chr1_4:69523950-69523969 | None:intergenic | 45.0% |
| TGCTGATGAATGCATGGTTC+TGG | + | chr1_4:69523965-69523984 | Msa0181330:CDS | 45.0% | |
| GAGTAGTGAGTTTAAGGGTG+CGG | - | chr1_4:69524019-69524038 | None:intergenic | 45.0% | |
| CTAATTTCGGCCACAATGAG+TGG | + | chr1_4:69524191-69524210 | Msa0181330:CDS | 45.0% | |
| ACATGTTGTCTTCGATTCCC+TGG | + | chr1_4:69524218-69524237 | Msa0181330:CDS | 45.0% | |
| AAGAAATGCAACCGAGGGAA+AGG | - | chr1_4:69524287-69524306 | None:intergenic | 45.0% | |
| CCATGAAGAAATGCAACCGA+GGG | - | chr1_4:69524292-69524311 | None:intergenic | 45.0% | |
| ACCATGAAGAAATGCAACCG+AGG | - | chr1_4:69524293-69524312 | None:intergenic | 45.0% | |
| TCGGTTGCATTTCTTCATGG+TGG | + | chr1_4:69524292-69524311 | Msa0181330:CDS | 45.0% | |
| CGGTTGCATTTCTTCATGGT+GGG | + | chr1_4:69524293-69524312 | Msa0181330:CDS | 45.0% | |
| ATGCTGTCAAATAACGACCG+TGG | - | chr1_4:69524430-69524449 | None:intergenic | 45.0% | |
| !! | CCCACCAACTGGTCTTAAAA+TGG | + | chr1_4:69524577-69524596 | Msa0181330:CDS | 45.0% |
| !!! | GCCATTTTAAGACCAGTTGG+TGG | - | chr1_4:69524581-69524600 | None:intergenic | 45.0% |
| GAGGGTAAGTGAGCAATTCA+CGG | + | chr1_4:69524646-69524665 | Msa0181330:CDS | 45.0% | |
| ! | CTTGCATTGGTATACTGGAG+AGG | + | chr1_4:69524691-69524710 | Msa0181330:CDS | 45.0% |
| TTGGTATACTGGAGAGGGTA+TGG | + | chr1_4:69524697-69524716 | Msa0181330:CDS | 45.0% | |
| !! | ATTGCTGGTACTCTGAGACA+AGG | - | chr1_4:69524763-69524782 | None:intergenic | 45.0% |
| CAGTAGCATCTTGGTATTGC+TGG | - | chr1_4:69524778-69524797 | None:intergenic | 45.0% | |
| CTTCATCTGCAGTAGCATCT+TGG | - | chr1_4:69524787-69524806 | None:intergenic | 45.0% | |
| AGATGCTACTGCAGATGAAG+AGG | + | chr1_4:69524787-69524806 | Msa0181330:CDS | 45.0% | |
| GATGCTACTGCAGATGAAGA+GGG | + | chr1_4:69524788-69524807 | Msa0181330:CDS | 45.0% | |
| ATGCTACTGCAGATGAAGAG+GGG | + | chr1_4:69524789-69524808 | Msa0181330:CDS | 45.0% | |
| GGGGTATGACTATGAAGATG+AGG | + | chr1_4:69524808-69524827 | Msa0181330:CDS | 45.0% | |
| AGATGAGGAGGAAGAAGTTC+AGG | + | chr1_4:69524823-69524842 | Msa0181330:CDS | 45.0% | |
| !! | CCCGAAAAAGGTATTCAGGT+TGG | - | chr1_4:69524952-69524971 | None:intergenic | 45.0% |
| !! | TACCCCCGAAAAAGGTATTC+AGG | - | chr1_4:69524956-69524975 | None:intergenic | 45.0% |
| !!! | AATACCTTTTTCGGGGGTAC+TGG | + | chr1_4:69524957-69524976 | Msa0181330:three_prime_UTR | 45.0% |
| AAATCCAGTACCCCCGAAAA+AGG | - | chr1_4:69524964-69524983 | None:intergenic | 45.0% | |
| !! | GGGGTACTGGATTTGTTGTT+CGG | + | chr1_4:69524970-69524989 | Msa0181330:three_prime_UTR | 45.0% |
| GGGATGTAACGAGTATGCGA+CGG | - | chr1_4:69522114-69522133 | None:intergenic | 50.0% | |
| CACATCCAAGGAGGACAATG+CGG | + | chr1_4:69522312-69522331 | Msa0181330:CDS | 50.0% | |
| GGACAATGCGGCAACCAAAT+CGG | + | chr1_4:69522324-69522343 | Msa0181330:CDS | 50.0% | |
| GTTGTTCCCTTGGTACCTTC+CGG | - | chr1_4:69522397-69522416 | None:intergenic | 50.0% | |
| CGTTCCTAGAGCTGTTCTCA+TGG | + | chr1_4:69522473-69522492 | Msa0181330:CDS | 50.0% | |
| ! | GTTCTCATGGATCTAGAGCC+AGG | + | chr1_4:69522486-69522505 | Msa0181330:CDS | 50.0% |
| AGCGTCAGATCTGGTCCATA+CGG | + | chr1_4:69522519-69522538 | Msa0181330:CDS | 50.0% | |
| ! | ATACGGTCAGATTTTCCGGC+CGG | + | chr1_4:69522536-69522555 | Msa0181330:CDS | 50.0% |
| ! | CGGCCGGATAACTTCGTTTT+TGG | + | chr1_4:69522552-69522571 | Msa0181330:CDS | 50.0% |
| ! | ACCTTTCGCCCAGTTGTTTC+CGG | - | chr1_4:69522589-69522608 | None:intergenic | 50.0% |
| GCGAAAGGTCACTACACTGA+AGG | + | chr1_4:69522600-69522619 | Msa0181330:CDS | 50.0% | |
| !! | TTTCAGGTTTGCCACTCCCT+TGG | + | chr1_4:69523777-69523796 | Msa0181330:CDS | 50.0% |
| AGAACCAGTACCACCACCAA+GGG | - | chr1_4:69523796-69523815 | None:intergenic | 50.0% | |
| !! | TGGTGGTACTGGTTCTGGAA+TGG | + | chr1_4:69523800-69523819 | Msa0181330:CDS | 50.0% |
| !! | GGTGGTACTGGTTCTGGAAT+GGG | + | chr1_4:69523801-69523820 | Msa0181330:CDS | 50.0% |
| CCCTCGGTTGCATTTCTTCA+TGG | + | chr1_4:69524289-69524308 | Msa0181330:CDS | 50.0% | |
| TGAACCACGAGAAGTGAGTG+GGG | - | chr1_4:69524324-69524343 | None:intergenic | 50.0% | |
| GTGAACCACGAGAAGTGAGT+GGG | - | chr1_4:69524325-69524344 | None:intergenic | 50.0% | |
| TGTGAACCACGAGAAGTGAG+TGG | - | chr1_4:69524326-69524345 | None:intergenic | 50.0% | |
| TCGTGGTTCACAGCAGTACA+GGG | + | chr1_4:69524334-69524353 | Msa0181330:CDS | 50.0% | |
| CTTCGAATCCCACATCTGCT+GGG | - | chr1_4:69524381-69524400 | None:intergenic | 50.0% | |
| TCTTCGAATCCCACATCTGC+TGG | - | chr1_4:69524382-69524401 | None:intergenic | 50.0% | |
| GCTCATCTTACCACGGAACA+TGG | - | chr1_4:69524456-69524475 | None:intergenic | 50.0% | |
| !! | CCTTGGTGCTCATCTTACCA+CGG | - | chr1_4:69524463-69524482 | None:intergenic | 50.0% |
| TGGTAAGATGAGCACCAAGG+AGG | + | chr1_4:69524463-69524482 | Msa0181330:CDS | 50.0% | |
| CATCTGCTCATCAACCTCCT+TGG | - | chr1_4:69524480-69524499 | None:intergenic | 50.0% | |
| ! | TGGAGAGGGTATGGATGAGA+TGG | + | chr1_4:69524706-69524725 | Msa0181330:CDS | 50.0% |
| TGAGGAGGAAGAAGTTCAGG+AGG | + | chr1_4:69524826-69524845 | Msa0181330:CDS | 50.0% | |
| GAAGTTGTGTGCGCTGAGCA+CGG | + | chr1_4:69522360-69522379 | Msa0181330:CDS | 55.0% | |
| AAGTTGTGTGCGCTGAGCAC+GGG | + | chr1_4:69522361-69522380 | Msa0181330:CDS | 55.0% | |
| !! | ACTCCACCGGAAGGTACCAA+GGG | + | chr1_4:69522388-69522407 | Msa0181330:CDS | 55.0% |
| ! | GGATCTAGAGCCAGGGACTA+TGG | + | chr1_4:69522494-69522513 | Msa0181330:CDS | 55.0% |
| CTGACGCTATCCATAGTCCC+TGG | - | chr1_4:69522507-69522526 | None:intergenic | 55.0% | |
| GGCCGGAAAATCTGACCGTA+TGG | - | chr1_4:69522537-69522556 | None:intergenic | 55.0% | |
| !! | GTTTTTGGACAGTCCGGTGC+CGG | + | chr1_4:69522567-69522586 | Msa0181330:CDS | 55.0% |
| CAGAACCAGTACCACCACCA+AGG | - | chr1_4:69523797-69523816 | None:intergenic | 55.0% | |
| !! | CTTGGTGGTGGTACTGGTTC+TGG | + | chr1_4:69523795-69523814 | Msa0181330:CDS | 55.0% |
| CTCCGTGTTCCCATCTCCTA+AGG | + | chr1_4:69523881-69523900 | Msa0181330:CDS | 55.0% | |
| TTTGCCCCACTCACTTCTCG+TGG | + | chr1_4:69524317-69524336 | Msa0181330:CDS | 55.0% | |
| CTCGTGGTTCACAGCAGTAC+AGG | + | chr1_4:69524333-69524352 | Msa0181330:CDS | 55.0% | |
| TGAGCTGACCCAGCAGATGT+GGG | + | chr1_4:69524370-69524389 | Msa0181330:CDS | 55.0% | |
| GTCAAATAACGACCGTGGCG+AGG | - | chr1_4:69524425-69524444 | None:intergenic | 55.0% | |
| ACAGCATCTGCCATGTTCCG+TGG | + | chr1_4:69524443-69524462 | Msa0181330:CDS | 55.0% | |
| CCGTGGTAAGATGAGCACCA+AGG | + | chr1_4:69524460-69524479 | Msa0181330:CDS | 55.0% | |
| GGTTGCCGCATTGTCCTCCT+TGG | - | chr1_4:69522320-69522339 | None:intergenic | 60.0% | |
| !! | GACTCCACCGGAAGGTACCA+AGG | + | chr1_4:69522387-69522406 | Msa0181330:CDS | 60.0% |
| GTTCCCTTGGTACCTTCCGG+TGG | - | chr1_4:69522394-69522413 | None:intergenic | 60.0% | |
| ! | AGTCCGGTGCCGGAAACAAC+TGG | + | chr1_4:69522577-69522596 | Msa0181330:CDS | 60.0% |
| ! | GTCCGGTGCCGGAAACAACT+GGG | + | chr1_4:69522578-69522597 | Msa0181330:CDS | 60.0% |
| GCCGGAAACAACTGGGCGAA+AGG | + | chr1_4:69522585-69522604 | Msa0181330:CDS | 60.0% | |
| CAGGTTTGCCACTCCCTTGG+TGG | + | chr1_4:69523780-69523799 | Msa0181330:CDS | 60.0% | |
| GTTTGCCACTCCCTTGGTGG+TGG | + | chr1_4:69523783-69523802 | Msa0181330:CDS | 60.0% | |
| CAGTACCACCACCAAGGGAG+TGG | - | chr1_4:69523791-69523810 | None:intergenic | 60.0% | |
| !! | CACTCCCTTGGTGGTGGTAC+TGG | + | chr1_4:69523789-69523808 | Msa0181330:CDS | 60.0% |
| CACATCTGCTGGGTCAGCTC+AGG | - | chr1_4:69524371-69524390 | None:intergenic | 60.0% | |
| CTGAGCTGACCCAGCAGATG+TGG | + | chr1_4:69524369-69524388 | Msa0181330:CDS | 60.0% | |
| TGGTGGGATGTCGCAGACAG+TGG | - | chr1_4:69524564-69524583 | None:intergenic | 60.0% | |
| GTCTGCGACATCCCACCAAC+TGG | + | chr1_4:69524566-69524585 | Msa0181330:CDS | 60.0% | |
| ! | GAGCACGGGATCGACTCCAC+CGG | + | chr1_4:69522375-69522394 | Msa0181330:CDS | 65.0% |
| ! | ACGGGATCGACTCCACCGGA+AGG | + | chr1_4:69522379-69522398 | Msa0181330:CDS | 65.0% |
| ! | CGCCCAGTTGTTTCCGGCAC+CGG | - | chr1_4:69522583-69522602 | None:intergenic | 65.0% |
| TGCGCTGCTGATCCTCGCCA+CGG | + | chr1_4:69524410-69524429 | Msa0181330:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 69522110 | 69525173 | 69522110 | ID=Msa0181330;Name=Msa0181330 |
| chr1_4 | mRNA | 69522110 | 69525173 | 69522110 | ID=Msa0181330-mRNA-1;Parent=Msa0181330;Name=Msa0181330-mRNA-1;_AED=0.04;_eAED=0.04;_QI=187|1|1|1|1|1|3|314|449 |
| chr1_4 | exon | 69522110 | 69522690 | 69522110 | ID=Msa0181330-mRNA-1:exon:23073;Parent=Msa0181330-mRNA-1 |
| chr1_4 | exon | 69523775 | 69524044 | 69523775 | ID=Msa0181330-mRNA-1:exon:23074;Parent=Msa0181330-mRNA-1 |
| chr1_4 | exon | 69524174 | 69525173 | 69524174 | ID=Msa0181330-mRNA-1:exon:23075;Parent=Msa0181330-mRNA-1 |
| chr1_4 | five_prime_UTR | 69522110 | 69522296 | 69522110 | ID=Msa0181330-mRNA-1:five_prime_utr;Parent=Msa0181330-mRNA-1 |
| chr1_4 | CDS | 69522297 | 69522690 | 69522297 | ID=Msa0181330-mRNA-1:cds;Parent=Msa0181330-mRNA-1 |
| chr1_4 | CDS | 69523775 | 69524044 | 69523775 | ID=Msa0181330-mRNA-1:cds;Parent=Msa0181330-mRNA-1 |
| chr1_4 | CDS | 69524174 | 69524859 | 69524174 | ID=Msa0181330-mRNA-1:cds;Parent=Msa0181330-mRNA-1 |
| chr1_4 | three_prime_UTR | 69524860 | 69525173 | 69524860 | ID=Msa0181330-mRNA-1:three_prime_utr;Parent=Msa0181330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
