AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1406720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1406720 MtrunA17_Chr3g0119541 96.685 362 12 0 1 362 1 362 0.0 707
Msa1406720 MtrunA17_Chr5g0439251 74.269 342 88 0 20 361 19 360 0.0 530
Msa1406720 MtrunA17_Chr1g0177171 66.972 327 108 0 22 348 34 360 1.13e-159 457
Msa1406720 MtrunA17_Chr1g0189111 49.697 330 162 4 19 347 24 350 6.97e-103 309
Msa1406720 MtrunA17_Chr4g0026321 47.164 335 165 5 22 353 25 350 3.90e-101 303
Msa1406720 MtrunA17_Chr4g0043851 44.321 361 191 5 3 362 11 362 7.62e-100 301
Msa1406720 MtrunA17_Chr2g0321511 44.048 336 183 3 9 343 12 343 4.73e-96 291
Msa1406720 MtrunA17_Chr4g0003281 44.986 349 186 4 4 351 20 363 1.16e-94 288
Msa1406720 MtrunA17_Chr8g0389741 42.727 330 188 1 20 349 22 350 2.79e-94 290
Msa1406720 MtrunA17_Chr2g0285901 45.322 342 179 6 7 343 1 339 1.09e-92 282
Msa1406720 MtrunA17_Chr6g0487261 41.429 350 203 2 1 349 1 349 3.86e-92 285
Msa1406720 MtrunA17_Chr1g0146831 44.242 330 177 4 15 342 20 344 9.70e-92 279
Msa1406720 MtrunA17_Chr7g0234821 43.614 321 176 4 27 343 27 346 6.44e-91 280
Msa1406720 MtrunA17_Chr4g0034901 42.982 342 188 4 4 343 10 346 7.10e-90 277
Msa1406720 MtrunA17_Chr1g0161011 41.714 350 199 3 4 349 1 349 1.86e-89 277
Msa1406720 MtrunA17_Chr8g0339191 40.698 344 199 4 4 343 7 349 2.60e-88 273
Msa1406720 MtrunA17_Chr3g0110371 42.210 353 194 4 1 349 3 349 4.75e-88 273
Msa1406720 MtrunA17_Chr3g0144531 43.252 326 182 3 20 343 21 345 9.86e-88 272
Msa1406720 MtrunA17_Chr4g0046311 39.306 346 203 3 7 346 4 348 2.16e-86 269
Msa1406720 MtrunA17_Chr1g0155001 42.812 320 180 3 26 343 24 342 2.86e-85 264
Msa1406720 MtrunA17_Chr4g0075031 40.449 356 193 4 4 341 8 362 4.52e-85 267
Msa1406720 MtrunA17_Chr4g0064021 43.125 320 180 2 27 345 27 345 7.81e-85 262
Msa1406720 MtrunA17_Chr5g0434591 41.964 336 186 3 1 333 3 332 2.58e-83 261
Msa1406720 MtrunA17_Chr3g0121271 38.415 328 197 3 23 346 23 349 1.83e-81 257
Msa1406720 MtrunA17_Chr7g0223961 43.302 321 173 6 24 342 21 334 3.08e-81 254
Msa1406720 MtrunA17_Chr4g0043511 43.824 340 180 8 26 362 62 393 5.81e-80 254
Msa1406720 MtrunA17_Chr4g0039071 42.368 321 178 4 23 343 22 335 2.97e-79 247
Msa1406720 MtrunA17_Chr8g0378621 38.261 345 202 3 4 345 11 347 8.71e-79 250
Msa1406720 MtrunA17_Chr4g0038981 42.056 321 172 8 25 345 22 328 7.86e-77 239
Msa1406720 MtrunA17_Chr4g0039011 41.742 333 181 7 25 357 41 360 7.53e-76 238
Msa1406720 MtrunA17_Chr4g0038941 42.901 324 165 8 25 345 51 357 1.03e-75 238
Msa1406720 MtrunA17_Chr4g0038971 41.543 337 182 9 10 345 6 328 1.19e-74 234
Msa1406720 MtrunA17_Chr4g0038961 42.547 322 169 9 25 345 22 328 2.40e-74 233
Msa1406720 MtrunA17_Chr2g0294591 39.755 327 184 8 25 349 29 344 1.33e-70 224
Msa1406720 MtrunA17_Chr2g0294601 40.964 332 179 10 25 352 58 376 3.57e-68 219
Msa1406720 MtrunA17_Chr4g0039021 40.493 284 160 4 52 335 7 281 4.93e-66 211
Msa1406720 MtrunA17_Chr1g0174261 41.379 290 161 5 55 343 1 282 5.21e-65 209
Msa1406720 MtrunA17_Chr7g0250301 37.342 316 189 6 26 341 8 314 1.09e-64 208
Msa1406720 MtrunA17_Chr4g0076581 36.443 343 203 11 6 341 14 348 2.48e-56 191
Msa1406720 MtrunA17_Chr2g0290821 37.349 332 194 9 20 343 22 347 8.46e-55 187
Msa1406720 MtrunA17_Chr4g0062771 35.328 351 209 11 2 343 9 350 5.39e-53 182
Msa1406720 MtrunA17_Chr7g0250321 37.500 296 171 7 1 292 1 286 3.11e-52 175
Msa1406720 MtrunA17_Chr8g0383311 33.837 331 205 10 26 349 43 366 3.11e-51 177
Msa1406720 MtrunA17_Chr7g0253091 34.097 349 205 13 1 336 1 337 2.59e-50 175
Msa1406720 MtrunA17_Chr1g0148391 36.391 327 190 11 26 343 26 343 4.04e-50 174
Msa1406720 MtrunA17_Chr4g0069801 34.358 358 210 13 4 352 11 352 1.00e-49 174
Msa1406720 MtrunA17_Chr3g0138741 35.736 333 198 11 19 343 24 348 8.31e-49 171
Msa1406720 MtrunA17_Chr6g0461601 36.778 329 179 14 26 338 26 341 1.78e-48 170
Msa1406720 MtrunA17_Chr3g0129341 32.386 352 217 15 9 349 14 355 1.93e-44 159
Msa1406720 MtrunA17_Chr5g0436361 32.131 305 195 8 42 342 53 349 3.84e-44 156
Msa1406720 MtrunA17_Chr3g0105981 33.846 325 201 9 25 343 26 342 1.85e-42 153
Msa1406720 MtrunA17_Chr2g0306311 32.203 354 196 12 26 343 30 375 2.94e-42 154
Msa1406720 MtrunA17_Chr2g0294581 38.931 131 78 1 25 153 75 205 1.05e-22 96.3
Msa1406720 MtrunA17_Chr2g0294581 40.816 98 50 5 243 339 187 277 2.39e-13 69.7
Msa1406720 MtrunA17_Chr4g0018771 45.977 87 42 2 257 343 94 175 1.59e-16 77.8
Msa1406720 MtrunA17_Chr4g0018771 45.161 62 34 0 23 84 23 84 1.68e-11 63.2
Msa1406720 MtrunA17_Chr4g0018861 45.977 87 42 2 257 343 92 173 4.38e-16 76.6
Msa1406720 MtrunA17_Chr4g0018861 45.902 61 33 0 24 84 20 80 1.85e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1406720 AT2G05790.1 73.653 334 88 0 22 355 21 354 0.0 534
Msa1406720 AT5G55180.2 68.421 323 102 0 21 343 22 344 1.36e-158 453
Msa1406720 AT5G55180.1 68.421 323 102 0 21 343 22 344 1.55e-158 453
Msa1406720 AT4G26830.1 64.201 338 119 2 9 346 9 344 5.10e-149 428
Msa1406720 AT4G26830.2 65.231 325 112 1 22 346 25 348 8.54e-149 428
Msa1406720 AT1G32860.1 48.466 326 163 4 25 347 28 351 3.94e-104 313
Msa1406720 AT2G27500.2 46.386 332 171 3 23 353 26 351 9.31e-100 300
Msa1406720 AT2G27500.1 46.386 332 171 3 23 353 26 351 2.15e-99 300
Msa1406720 AT5G42100.2 47.748 333 166 6 15 343 18 346 2.28e-97 296
Msa1406720 AT1G30080.2 45.115 348 182 4 3 343 7 352 2.71e-97 294
Msa1406720 AT4G18340.2 44.957 347 182 4 8 347 10 354 3.27e-97 294
Msa1406720 AT5G42100.1 47.748 333 166 6 15 343 18 346 3.91e-97 295
Msa1406720 AT1G30080.1 45.115 348 182 4 3 343 7 352 3.93e-97 295
Msa1406720 AT4G18340.1 45.087 346 181 4 8 346 10 353 5.79e-97 294
Msa1406720 AT5G24318.4 45.794 321 167 4 25 343 29 344 7.86e-96 290
Msa1406720 AT5G24318.2 44.543 339 181 4 25 361 29 362 1.24e-94 290
Msa1406720 AT5G24318.1 44.543 339 181 4 25 361 29 362 1.67e-94 290
Msa1406720 AT3G15800.1 47.256 328 168 4 27 352 44 368 2.41e-94 287
Msa1406720 AT2G16230.1 45.031 322 175 2 26 346 25 345 1.61e-92 286
Msa1406720 AT5G42720.1 44.638 345 182 4 4 346 10 347 8.40e-92 282
Msa1406720 AT2G26600.1 43.114 334 185 3 16 345 21 353 8.74e-90 275
Msa1406720 AT5G56590.1 41.411 326 188 3 23 346 23 347 1.06e-87 273
Msa1406720 AT4G29360.2 43.440 343 191 2 6 346 15 356 2.20e-87 274
Msa1406720 AT4G34480.2 44.828 319 174 2 26 343 26 343 1.12e-86 266
Msa1406720 AT4G29360.1 41.739 345 200 1 2 346 3 346 2.72e-86 271
Msa1406720 AT4G14080.1 41.088 331 191 3 19 346 35 364 1.14e-85 267
Msa1406720 AT4G34480.1 44.828 319 174 2 26 343 26 343 1.03e-84 266
Msa1406720 AT2G01630.2 41.284 327 188 2 26 349 23 348 2.39e-84 261
Msa1406720 AT2G01630.3 41.284 327 188 2 26 349 23 348 3.65e-84 262
Msa1406720 AT3G07320.1 40.841 333 190 5 27 355 26 355 3.90e-84 263
Msa1406720 AT3G23770.1 40.176 341 195 4 19 353 30 367 1.71e-83 262
Msa1406720 AT2G01630.1 41.284 327 188 2 26 349 23 348 3.29e-83 262
Msa1406720 AT1G66250.1 40.896 335 193 3 18 349 24 356 3.32e-83 262
Msa1406720 AT3G13560.4 40.549 328 189 4 19 341 17 343 6.60e-81 256
Msa1406720 AT3G13560.1 40.549 328 189 4 19 341 17 343 6.60e-81 256
Msa1406720 AT3G13560.2 40.549 328 189 4 19 341 17 343 6.60e-81 256
Msa1406720 AT3G13560.5 40.549 328 189 4 19 341 17 343 6.60e-81 256
Msa1406720 AT3G13560.3 40.549 328 189 4 19 341 17 343 6.60e-81 256
Msa1406720 AT1G11820.1 39.812 319 188 3 26 341 44 361 2.20e-80 251
Msa1406720 AT1G11820.3 39.812 319 188 3 26 341 44 361 2.34e-79 251
Msa1406720 AT1G11820.2 39.812 319 188 3 26 341 44 361 7.74e-79 251
Msa1406720 AT2G27500.3 44.604 278 147 3 77 353 2 273 1.98e-78 243
Msa1406720 AT4G16260.1 39.420 345 197 7 4 348 5 337 2.29e-75 236
Msa1406720 AT3G57270.1 40.615 325 182 7 23 345 24 339 5.37e-72 228
Msa1406720 AT3G55430.1 39.286 336 185 12 14 343 19 341 7.53e-71 228
Msa1406720 AT3G46570.1 41.714 350 183 12 1 343 7 342 8.01e-71 225
Msa1406720 AT4G16260.2 40.190 316 180 6 33 348 2 308 3.01e-70 223
Msa1406720 AT3G61810.1 37.690 329 186 5 26 346 55 372 3.47e-69 222
Msa1406720 AT2G26600.2 42.913 254 143 2 93 345 7 259 5.10e-69 219
Msa1406720 AT1G77780.1 39.359 343 193 9 4 343 2 332 5.89e-65 210
Msa1406720 AT3G57260.1 37.427 342 197 8 4 345 14 338 1.87e-64 208
Msa1406720 AT3G57260.2 37.427 342 197 8 4 345 30 354 4.12e-64 208
Msa1406720 AT5G24318.3 44.493 227 122 1 135 361 1 223 3.12e-63 204
Msa1406720 AT2G39640.1 36.337 344 205 10 3 343 6 338 2.54e-61 206
Msa1406720 AT4G34480.3 47.186 231 120 2 114 343 3 232 9.72e-59 195
Msa1406720 AT1G77790.1 36.152 343 209 7 3 343 7 341 1.92e-58 193
Msa1406720 AT3G57240.1 36.875 320 188 8 26 345 35 340 3.86e-58 192
Msa1406720 AT5G20390.1 36.364 341 205 9 3 341 11 341 7.20e-58 191
Msa1406720 AT5G20330.1 38.838 327 189 8 19 343 27 344 2.20e-57 190
Msa1406720 AT5G20340.1 37.764 331 193 9 16 343 33 353 5.20e-55 184
Msa1406720 AT3G24330.1 33.520 358 219 12 2 349 16 364 1.58e-53 184
Msa1406720 AT1G33220.1 36.012 336 196 7 9 343 17 334 2.16e-52 177
Msa1406720 AT5G18220.1 34.181 354 213 11 5 351 13 353 1.01e-51 179
Msa1406720 AT2G19440.2 35.380 342 197 14 19 349 16 344 3.26e-51 177
Msa1406720 AT2G19440.1 35.380 342 197 14 19 349 16 344 3.26e-51 177
Msa1406720 AT3G55780.1 29.375 320 216 7 42 356 51 365 2.51e-50 173
Msa1406720 AT1G64760.1 35.000 340 201 14 24 353 23 352 7.26e-50 174
Msa1406720 AT1G64760.2 35.000 340 201 14 24 353 23 352 7.26e-50 174
Msa1406720 AT4G17180.1 34.111 343 205 11 24 357 23 353 1.08e-49 173
Msa1406720 AT5G58090.1 36.111 324 185 13 24 336 20 332 9.73e-48 168
Msa1406720 AT5G64790.1 33.898 354 216 11 4 349 8 351 6.76e-47 166
Msa1406720 AT3G04010.1 32.773 357 220 12 6 353 15 360 1.15e-46 166
Msa1406720 AT4G31140.1 33.718 347 213 13 19 356 20 358 2.25e-46 165
Msa1406720 AT5G20870.1 33.333 351 208 14 2 336 7 347 4.83e-45 161
Msa1406720 AT5G20560.1 32.836 335 212 9 4 335 12 336 2.49e-43 153
Msa1406720 AT5G58480.1 33.131 329 204 9 25 345 25 345 9.89e-43 155

Find 118 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTACTTCAGAGAGGAATTT+TGG 0.105755 tig0023240:-67127 Msa1406720:CDS
GTTTGACTCGTAAGCGAAAA+AGG 0.189514 tig0023240:+67492 None:intergenic
GATGGCTTCTATTTGGGTTT+TGG 0.211284 tig0023240:+67777 None:intergenic
CGACGGCGATGGCTTCTATT+TGG 0.212947 tig0023240:+67770 None:intergenic
ATATCTGCAAAATGAAATTT+AGG 0.220474 tig0023240:+66863 None:intergenic
CATGGCGGGGATGAGGTATT+TGG 0.229684 tig0023240:+67714 None:intergenic
AAACATGTTAGTATGTTAAT+TGG 0.237975 tig0023240:-66799 Msa1406720:three_prime_UTR
TCGAGGTTGAGAATATAATT+TGG 0.241683 tig0023240:-66906 Msa1406720:three_prime_UTR
CTAATATTTGTTAGATTTGT+TGG 0.271362 tig0023240:-66776 Msa1406720:three_prime_UTR
TCCTCTTATCCGTCTTCAAC+CGG 0.271730 tig0023240:-67607 Msa1406720:CDS
TGAAACGTCGTCGTATTTAA+TGG 0.286292 tig0023240:-67527 Msa1406720:CDS
TCATAAACTTTCTTCATATC+AGG 0.295925 tig0023240:+67094 None:intergenic
GACGGCGATGGCTTCTATTT+GGG 0.306420 tig0023240:+67771 None:intergenic
TTATGATCAGTTCATTATCT+TGG 0.322108 tig0023240:-66940 Msa1406720:three_prime_UTR
AGATTCGCATTCGGTCTTAA+AGG 0.324788 tig0023240:+67196 None:intergenic
CGAGGTTGAGAATATAATTT+GGG 0.329120 tig0023240:-66905 Msa1406720:three_prime_UTR
TTTAGCATTGGTTTAATTAC+GGG 0.335880 tig0023240:+67559 None:intergenic
TAATATTTGTTAGATTTGTT+GGG 0.346495 tig0023240:-66775 Msa1406720:three_prime_UTR
TATGATCAGTTCATTATCTT+GGG 0.350524 tig0023240:-66939 Msa1406720:three_prime_UTR
TTGTATCACATTAATTCATA+TGG 0.352912 tig0023240:+66639 None:intergenic
GTTTAGCATTGGTTTAATTA+CGG 0.353752 tig0023240:+67558 None:intergenic
GATTCGCATTCGGTCTTAAA+GGG 0.355739 tig0023240:+67197 None:intergenic
CTCTCACTTCCACTACTTGC+AGG 0.379057 tig0023240:-68321 Msa1406720:intron
AGTTCTGCTCAGCCGCTTCC+CGG 0.386123 tig0023240:+67022 None:intergenic
GTTTACGGTTACTTTGATTC+CGG 0.388759 tig0023240:+67885 None:intergenic
TTCAACCCCGCCACAGTAAA+CGG 0.391365 tig0023240:+67067 None:intergenic
TACCGTGACGTTTCGGCGCC+GGG 0.395980 tig0023240:-67040 Msa1406720:CDS
GACGTTTCGGCGCCGGGAAG+CGG 0.399867 tig0023240:-67034 Msa1406720:CDS
TTGTTCGTTTGGGAGGTTTA+CGG 0.405496 tig0023240:+67870 None:intergenic
TATAGAAGAGTTGTTCGTTT+GGG 0.414891 tig0023240:+67860 None:intergenic
TTTGATTCCGGATCCGGATA+AGG 0.415353 tig0023240:+67897 None:intergenic
GAAGAGTTACCGTGACGTTT+CGG 0.420176 tig0023240:-67047 Msa1406720:CDS
AATTCCATTGGAGTGAACTA+TGG 0.424527 tig0023240:-68027 Msa1406720:CDS
GATGTTCCGTTTACTGTGGC+GGG 0.429934 tig0023240:-67073 Msa1406720:CDS
CGCCCTATTTCGTGAAAACC+CGG 0.430387 tig0023240:-67446 Msa1406720:CDS
GGTTACTTTGATTCCGGATC+CGG 0.435065 tig0023240:+67891 None:intergenic
TAGACGATGCATGGTGGGAT+AGG 0.436707 tig0023240:+68374 None:intergenic
GTTACAGATGGTAATTCCAT+TGG 0.459097 tig0023240:-68039 Msa1406720:intron
ATTACGGGTTCTATGAGATC+GGG 0.459527 tig0023240:+67574 None:intergenic
TAGTGGAAGTGAGAGGTATG+AGG 0.464913 tig0023240:+68329 None:intergenic
CCCGGTTGAAGACGGATAAG+AGG 0.467032 tig0023240:+67606 None:intergenic
TTAAATACGACGACGTTTCA+CGG 0.468689 tig0023240:+67530 None:intergenic
CTAAAATCCTTATCCGGATC+CGG 0.470230 tig0023240:-67904 Msa1406720:CDS
GTGAGAGGTATGAGGAAATG+AGG 0.472680 tig0023240:+68337 None:intergenic
TTACCTGGATCCACATTACC+CGG 0.476178 tig0023240:+67427 None:intergenic
TCATTATCTTGGGTGTGTCT+AGG 0.480062 tig0023240:-66929 Msa1406720:three_prime_UTR
AGAGTGGTTGTGAGTGAAAC+GGG 0.485100 tig0023240:-67322 Msa1406720:CDS
GTATAGAAGAGTTGTTCGTT+TGG 0.487771 tig0023240:+67859 None:intergenic
TTGTACGCAGCAGCGTTCTG+TGG 0.488748 tig0023240:+67259 None:intergenic
AATTACGGGTTCTATGAGAT+CGG 0.488872 tig0023240:+67573 None:intergenic
TTACCGTGACGTTTCGGCGC+CGG 0.490715 tig0023240:-67041 Msa1406720:CDS
TTTAATGAAAATGGGAAAGT+GGG 0.491545 tig0023240:-67151 Msa1406720:CDS
TGTACGCAGCAGCGTTCTGT+GGG 0.494413 tig0023240:+67260 None:intergenic
CCAAAATTCCTCTCTGAAGT+AGG 0.497611 tig0023240:+67127 None:intergenic
TAAAATCACAAGGAATCGAC+CGG 0.501310 tig0023240:-67957 Msa1406720:CDS
GCCGTTCTAAAATCCTTATC+CGG 0.508050 tig0023240:-67910 Msa1406720:CDS
TAGAGTGGTTGTGAGTGAAA+CGG 0.511502 tig0023240:-67323 Msa1406720:CDS
GTTAAGAAGATTCTGAATAA+CGG 0.515251 tig0023240:-67226 Msa1406720:CDS
AACCCGGGTAATGTGGATCC+AGG 0.516502 tig0023240:-67430 Msa1406720:CDS
AATATTTGTTAGATTTGTTG+GGG 0.516616 tig0023240:-66774 Msa1406720:three_prime_UTR
AGAAGAGTTGTTCGTTTGGG+AGG 0.520427 tig0023240:+67863 None:intergenic
TATATAGCTAAGAGATCAGT+AGG 0.522243 tig0023240:+66662 None:intergenic
CAAATAGAAGCCATCGCCGT+CGG 0.523034 tig0023240:-67769 Msa1406720:CDS
GTAATGTGGATCCAGGTAAC+GGG 0.524572 tig0023240:-67423 Msa1406720:CDS
CCAATCGCTTTATCTGCTCT+CGG 0.531316 tig0023240:-67631 Msa1406720:CDS
AGACGATGCATGGTGGGATA+GGG 0.531744 tig0023240:+68375 None:intergenic
GACTTCATTACCGACGGCGA+TGG 0.533265 tig0023240:+67759 None:intergenic
CTACTTTGAATGCTGAGGGT+AGG 0.540473 tig0023240:+67989 None:intergenic
GGTAATGTGGATCCAGGTAA+CGG 0.542039 tig0023240:-67424 Msa1406720:CDS
GAGGTATGAGGAAATGAGGA+TGG 0.545090 tig0023240:+68341 None:intergenic
CGTGCAACTTTCACTACACA+TGG 0.548989 tig0023240:+66722 None:intergenic
CTTAACTACTTTGAATGCTG+AGG 0.551196 tig0023240:+67984 None:intergenic
TGATGTTCCGTTTACTGTGG+CGG 0.551618 tig0023240:-67074 Msa1406720:CDS
AACTTTCCTACGCCCTCACA+TGG 0.552284 tig0023240:-67828 Msa1406720:CDS
TCTTGGGTGTGTCTAGGTCG+AGG 0.552824 tig0023240:-66923 Msa1406720:three_prime_UTR
TCGTGAAAACCCGGGTAATG+TGG 0.558115 tig0023240:-67437 Msa1406720:CDS
TTGGAGCCATGTGAGGGCGT+AGG 0.561253 tig0023240:+67822 None:intergenic
TTGAATGACCCGGTTGAAGA+CGG 0.562405 tig0023240:+67598 None:intergenic
TAAACGGTCAGATTCGCATT+CGG 0.565144 tig0023240:+67187 None:intergenic
CCGAGAGCAGATAAAGCGAT+TGG 0.569316 tig0023240:+67631 None:intergenic
CCTCTTATCCGTCTTCAACC+GGG 0.572031 tig0023240:-67606 Msa1406720:CDS
TCACGGAGGAAGTTTAGCAT+TGG 0.572211 tig0023240:+67547 None:intergenic
TTAACTACTTTGAATGCTGA+GGG 0.578124 tig0023240:+67985 None:intergenic
TTCCCGGCGCCGAAACGTCA+CGG 0.582794 tig0023240:+67038 None:intergenic
TCAATACGACGACGTTAGAG+TGG 0.588831 tig0023240:-67338 Msa1406720:CDS
GCGACCATAGTTCACTCCAA+TGG 0.590342 tig0023240:+68023 None:intergenic
ATGAGTAGACGATGCATGGT+GGG 0.593641 tig0023240:+68369 None:intergenic
GAAGCAATACCTGCAAGTAG+TGG 0.596051 tig0023240:+68312 None:intergenic
CGTCGGTAATGAAGTCTTCG+TGG 0.598441 tig0023240:-67752 Msa1406720:CDS
GGCGGGGATGAGGTATTTGG+TGG 0.601341 tig0023240:+67717 None:intergenic
CACGAAGACTTCATTACCGA+CGG 0.613529 tig0023240:+67753 None:intergenic
GAAACGGGTTGGCCTTCGAA+AGG 0.613978 tig0023240:-67307 Msa1406720:CDS
CGGTGTCGTAGAGTTTGACC+CGG 0.627592 tig0023240:+67938 None:intergenic
ATTCGCATTCGGTCTTAAAG+GGG 0.628701 tig0023240:+67198 None:intergenic
TTATGATGTTCCGTTTACTG+TGG 0.629594 tig0023240:-67077 Msa1406720:CDS
AGAAGATTCTGAATAACGGT+GGG 0.630333 tig0023240:-67222 Msa1406720:CDS
GAGATCGGGTTTGAATGACC+CGG 0.632773 tig0023240:+67588 None:intergenic
CAAACTCTACGACACCGACC+CGG 0.633891 tig0023240:-67932 Msa1406720:CDS
AAGAAGATTCTGAATAACGG+TGG 0.634613 tig0023240:-67223 Msa1406720:CDS
TACCTGGATCCACATTACCC+GGG 0.638164 tig0023240:+67428 None:intergenic
TCATCACTATCACCTTTCGA+AGG 0.639827 tig0023240:+67295 None:intergenic
GAAAGGTGATAGTGATGAGG+TGG 0.640804 tig0023240:-67290 Msa1406720:CDS
AAGAATGAGTAGACGATGCA+TGG 0.642954 tig0023240:+68365 None:intergenic
GCCCTATTTCGTGAAAACCC+GGG 0.653207 tig0023240:-67445 Msa1406720:CDS
TTCGAAAGGTGATAGTGATG+AGG 0.659057 tig0023240:-67293 Msa1406720:CDS
CAGAACGCTGCTGCGTACAA+CGG 0.661248 tig0023240:-67256 Msa1406720:CDS
CTGCAAGTAGTGGAAGTGAG+AGG 0.663993 tig0023240:+68322 None:intergenic
AAAATCACAAGGAATCGACC+GGG 0.666777 tig0023240:-67956 Msa1406720:CDS
AATGAGTAGACGATGCATGG+TGG 0.672661 tig0023240:+68368 None:intergenic
ATGTTCCGTTTACTGTGGCG+GGG 0.675695 tig0023240:-67072 Msa1406720:CDS
GTTAAGCTTCTAAAATCACA+AGG 0.686975 tig0023240:-67967 Msa1406720:CDS
TGGTTGTGAGTGAAACGGGT+TGG 0.699770 tig0023240:-67318 Msa1406720:CDS
ATATTTGTTAGATTTGTTGG+GGG 0.714508 tig0023240:-66773 Msa1406720:three_prime_UTR
GTACGCAGCAGCGTTCTGTG+GGG 0.722190 tig0023240:+67261 None:intergenic
AAAGGTGATAGTGATGAGGT+GGG 0.725483 tig0023240:-67289 Msa1406720:CDS
GCAACTTTCACTACACATGG+AGG 0.733978 tig0023240:+66725 None:intergenic
AATACGACGACGTTTCACGG+AGG 0.735832 tig0023240:+67533 None:intergenic
AAGTGGGACCTACTTCAGAG+AGG 0.745668 tig0023240:-67135 Msa1406720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATGTAAACAAAAAAGA+TGG + tig0023240:66743-66762 None:intergenic 15.0%
!!! TATTGGGATTAAATTTTATT+GGG - tig0023240:68175-68194 Msa1406720:intron 15.0%
!!! TAATATTTGTTAGATTTGTT+GGG - tig0023240:68239-68258 Msa1406720:intron 15.0%
!! AATAATGTAAACAAAAAAGA+TGG + tig0023240:66743-66762 None:intergenic 15.0%
!!! TATTGGGATTAAATTTTATT+GGG - tig0023240:68175-68194 Msa1406720:intron 15.0%
!!! TAATATTTGTTAGATTTGTT+GGG - tig0023240:68239-68258 Msa1406720:intron 15.0%
!!! TTATTAATTGTTGTTACAGA+TGG - tig0023240:66963-66982 Msa1406720:three_prime_UTR 20.0%
!!! AAAAAGCGCAAATAAATAAA+CGG + tig0023240:67846-67865 None:intergenic 20.0%
!! ATATCTGCAAAATGAAATTT+AGG + tig0023240:68154-68173 None:intergenic 20.0%
!!! GTATTGGGATTAAATTTTAT+TGG - tig0023240:68174-68193 Msa1406720:intron 20.0%
!! AAACATGTTAGTATGTTAAT+TGG - tig0023240:68215-68234 Msa1406720:intron 20.0%
!!! CTAATATTTGTTAGATTTGT+TGG - tig0023240:68238-68257 Msa1406720:intron 20.0%
!!! AATATTTGTTAGATTTGTTG+GGG - tig0023240:68240-68259 Msa1406720:intron 20.0%
!! TTGTATCACATTAATTCATA+TGG + tig0023240:68378-68397 None:intergenic 20.0%
!!! TTATTAATTGTTGTTACAGA+TGG - tig0023240:66963-66982 Msa1406720:three_prime_UTR 20.0%
!!! AAAAAGCGCAAATAAATAAA+CGG + tig0023240:67846-67865 None:intergenic 20.0%
!! ATATCTGCAAAATGAAATTT+AGG + tig0023240:68154-68173 None:intergenic 20.0%
!!! GTATTGGGATTAAATTTTAT+TGG - tig0023240:68174-68193 Msa1406720:intron 20.0%
!! AAACATGTTAGTATGTTAAT+TGG - tig0023240:68215-68234 Msa1406720:intron 20.0%
!!! CTAATATTTGTTAGATTTGT+TGG - tig0023240:68238-68257 Msa1406720:intron 20.0%
!!! AATATTTGTTAGATTTGTTG+GGG - tig0023240:68240-68259 Msa1406720:intron 20.0%
!! TTGTATCACATTAATTCATA+TGG + tig0023240:68378-68397 None:intergenic 20.0%
! TAATATAAACATGTGTGTGT+AGG - tig0023240:66796-66815 Msa1406720:three_prime_UTR 25.0%
!!! TTTAGCATTGGTTTAATTAC+GGG + tig0023240:67458-67477 None:intergenic 25.0%
!!! GTTTAGCATTGGTTTAATTA+CGG + tig0023240:67459-67478 None:intergenic 25.0%
! GTTAAGAAGATTCTGAATAA+CGG - tig0023240:67788-67807 Msa1406720:CDS 25.0%
!!! TTTGCGCTTTTTAATGAAAA+TGG - tig0023240:67854-67873 Msa1406720:CDS 25.0%
!!! TTGCGCTTTTTAATGAAAAT+GGG - tig0023240:67855-67874 Msa1406720:CDS 25.0%
!! TTTTAATGAAAATGGGAAAG+TGG - tig0023240:67862-67881 Msa1406720:CDS 25.0%
! TTTAATGAAAATGGGAAAGT+GGG - tig0023240:67863-67882 Msa1406720:CDS 25.0%
! TCATAAACTTTCTTCATATC+AGG + tig0023240:67923-67942 None:intergenic 25.0%
! TTATGATCAGTTCATTATCT+TGG - tig0023240:68074-68093 Msa1406720:intron 25.0%
! TATGATCAGTTCATTATCTT+GGG - tig0023240:68075-68094 Msa1406720:intron 25.0%
!! TTCATTTTGCAGATATGTAT+TGG - tig0023240:68158-68177 Msa1406720:intron 25.0%
!! TCATTTTGCAGATATGTATT+GGG - tig0023240:68159-68178 Msa1406720:intron 25.0%
!!! ATATTTGTTAGATTTGTTGG+GGG - tig0023240:68241-68260 Msa1406720:intron 25.0%
! TAATATAAACATGTGTGTGT+AGG - tig0023240:66796-66815 Msa1406720:three_prime_UTR 25.0%
!!! TTTAGCATTGGTTTAATTAC+GGG + tig0023240:67458-67477 None:intergenic 25.0%
!!! GTTTAGCATTGGTTTAATTA+CGG + tig0023240:67459-67478 None:intergenic 25.0%
! GTTAAGAAGATTCTGAATAA+CGG - tig0023240:67788-67807 Msa1406720:CDS 25.0%
!!! TTTGCGCTTTTTAATGAAAA+TGG - tig0023240:67854-67873 Msa1406720:CDS 25.0%
!!! TTGCGCTTTTTAATGAAAAT+GGG - tig0023240:67855-67874 Msa1406720:CDS 25.0%
!! TTTTAATGAAAATGGGAAAG+TGG - tig0023240:67862-67881 Msa1406720:CDS 25.0%
! TTTAATGAAAATGGGAAAGT+GGG - tig0023240:67863-67882 Msa1406720:CDS 25.0%
! TCATAAACTTTCTTCATATC+AGG + tig0023240:67923-67942 None:intergenic 25.0%
! TTATGATCAGTTCATTATCT+TGG - tig0023240:68074-68093 Msa1406720:intron 25.0%
! TATGATCAGTTCATTATCTT+GGG - tig0023240:68075-68094 Msa1406720:intron 25.0%
!! TTCATTTTGCAGATATGTAT+TGG - tig0023240:68158-68177 Msa1406720:intron 25.0%
!! TCATTTTGCAGATATGTATT+GGG - tig0023240:68159-68178 Msa1406720:intron 25.0%
!!! ATATTTGTTAGATTTGTTGG+GGG - tig0023240:68241-68260 Msa1406720:intron 25.0%
TGTATGTGAAAGTGACTTAT+CGG + tig0023240:66832-66851 None:intergenic 30.0%
TTAACTACTTTGAATGCTGA+GGG + tig0023240:67032-67051 None:intergenic 30.0%
!! GTTAAGCTTCTAAAATCACA+AGG - tig0023240:67047-67066 Msa1406720:CDS 30.0%
TATAGAAGAGTTGTTCGTTT+GGG + tig0023240:67157-67176 None:intergenic 30.0%
! TTTGTGAATGTTTTTCATGG+CGG + tig0023240:67318-67337 None:intergenic 30.0%
!! AGCTTTGTGAATGTTTTTCA+TGG + tig0023240:67321-67340 None:intergenic 30.0%
!! AAGAGATTTTGATGGAATTG+TGG + tig0023240:67361-67380 None:intergenic 30.0%
TCGAGGTTGAGAATATAATT+TGG - tig0023240:68108-68127 Msa1406720:intron 30.0%
CGAGGTTGAGAATATAATTT+GGG - tig0023240:68109-68128 Msa1406720:intron 30.0%
TATATAGCTAAGAGATCAGT+AGG + tig0023240:68355-68374 None:intergenic 30.0%
TGTATGTGAAAGTGACTTAT+CGG + tig0023240:66832-66851 None:intergenic 30.0%
TTAACTACTTTGAATGCTGA+GGG + tig0023240:67032-67051 None:intergenic 30.0%
!! GTTAAGCTTCTAAAATCACA+AGG - tig0023240:67047-67066 Msa1406720:CDS 30.0%
TATAGAAGAGTTGTTCGTTT+GGG + tig0023240:67157-67176 None:intergenic 30.0%
! TTTGTGAATGTTTTTCATGG+CGG + tig0023240:67318-67337 None:intergenic 30.0%
!! AGCTTTGTGAATGTTTTTCA+TGG + tig0023240:67321-67340 None:intergenic 30.0%
!! AAGAGATTTTGATGGAATTG+TGG + tig0023240:67361-67380 None:intergenic 30.0%
TCGAGGTTGAGAATATAATT+TGG - tig0023240:68108-68127 Msa1406720:intron 30.0%
CGAGGTTGAGAATATAATTT+GGG - tig0023240:68109-68128 Msa1406720:intron 30.0%
TATATAGCTAAGAGATCAGT+AGG + tig0023240:68355-68374 None:intergenic 30.0%
CAAAAAAGATGGTGAAGAAG+TGG + tig0023240:66732-66751 None:intergenic 35.0%
GTTACAGATGGTAATTCCAT+TGG - tig0023240:66975-66994 Msa1406720:three_prime_UTR 35.0%
AATTCCATTGGAGTGAACTA+TGG - tig0023240:66987-67006 Msa1406720:three_prime_UTR 35.0%
CTTAACTACTTTGAATGCTG+AGG + tig0023240:67033-67052 None:intergenic 35.0%
TAAAATCACAAGGAATCGAC+CGG - tig0023240:67057-67076 Msa1406720:CDS 35.0%
!! TCCGGATAAGGATTTTAGAA+CGG + tig0023240:67108-67127 None:intergenic 35.0%
! GTTTACGGTTACTTTGATTC+CGG + tig0023240:67132-67151 None:intergenic 35.0%
GTATAGAAGAGTTGTTCGTT+TGG + tig0023240:67158-67177 None:intergenic 35.0%
!! ATGGCTTCTATTTGGGTTTT+GGG + tig0023240:67239-67258 None:intergenic 35.0%
! TTGTGAATGTTTTTCATGGC+GGG + tig0023240:67317-67336 None:intergenic 35.0%
!! AGATTTTGATGGAATTGTGG+AGG + tig0023240:67358-67377 None:intergenic 35.0%
! GATTGGTGAAGAGATTTTGA+TGG + tig0023240:67369-67388 None:intergenic 35.0%
AATTACGGGTTCTATGAGAT+CGG + tig0023240:67444-67463 None:intergenic 35.0%
TTAAATACGACGACGTTTCA+CGG + tig0023240:67487-67506 None:intergenic 35.0%
TGAAACGTCGTCGTATTTAA+TGG - tig0023240:67487-67506 Msa1406720:CDS 35.0%
! TTTGACTCGTAAGCGAAAAA+GGG + tig0023240:67524-67543 None:intergenic 35.0%
!!! TAGTATTTTAACCCGTTACC+TGG + tig0023240:67605-67624 None:intergenic 35.0%
AAGAAGATTCTGAATAACGG+TGG - tig0023240:67791-67810 Msa1406720:CDS 35.0%
AGAAGATTCTGAATAACGGT+GGG - tig0023240:67792-67811 Msa1406720:CDS 35.0%
! CTACTTCAGAGAGGAATTTT+GGG - tig0023240:67888-67907 Msa1406720:CDS 35.0%
TTATGATGTTCCGTTTACTG+TGG - tig0023240:67937-67956 Msa1406720:CDS 35.0%
CAAAAAAGATGGTGAAGAAG+TGG + tig0023240:66732-66751 None:intergenic 35.0%
GTTACAGATGGTAATTCCAT+TGG - tig0023240:66975-66994 Msa1406720:three_prime_UTR 35.0%
AATTCCATTGGAGTGAACTA+TGG - tig0023240:66987-67006 Msa1406720:three_prime_UTR 35.0%
CTTAACTACTTTGAATGCTG+AGG + tig0023240:67033-67052 None:intergenic 35.0%
TAAAATCACAAGGAATCGAC+CGG - tig0023240:67057-67076 Msa1406720:CDS 35.0%
!! TCCGGATAAGGATTTTAGAA+CGG + tig0023240:67108-67127 None:intergenic 35.0%
! GTTTACGGTTACTTTGATTC+CGG + tig0023240:67132-67151 None:intergenic 35.0%
GTATAGAAGAGTTGTTCGTT+TGG + tig0023240:67158-67177 None:intergenic 35.0%
!! ATGGCTTCTATTTGGGTTTT+GGG + tig0023240:67239-67258 None:intergenic 35.0%
! TTGTGAATGTTTTTCATGGC+GGG + tig0023240:67317-67336 None:intergenic 35.0%
!! AGATTTTGATGGAATTGTGG+AGG + tig0023240:67358-67377 None:intergenic 35.0%
! GATTGGTGAAGAGATTTTGA+TGG + tig0023240:67369-67388 None:intergenic 35.0%
AATTACGGGTTCTATGAGAT+CGG + tig0023240:67444-67463 None:intergenic 35.0%
TTAAATACGACGACGTTTCA+CGG + tig0023240:67487-67506 None:intergenic 35.0%
TGAAACGTCGTCGTATTTAA+TGG - tig0023240:67487-67506 Msa1406720:CDS 35.0%
! TTTGACTCGTAAGCGAAAAA+GGG + tig0023240:67524-67543 None:intergenic 35.0%
!!! TAGTATTTTAACCCGTTACC+TGG + tig0023240:67605-67624 None:intergenic 35.0%
AAGAAGATTCTGAATAACGG+TGG - tig0023240:67791-67810 Msa1406720:CDS 35.0%
AGAAGATTCTGAATAACGGT+GGG - tig0023240:67792-67811 Msa1406720:CDS 35.0%
! CTACTTCAGAGAGGAATTTT+GGG - tig0023240:67888-67907 Msa1406720:CDS 35.0%
TTATGATGTTCCGTTTACTG+TGG - tig0023240:67937-67956 Msa1406720:CDS 35.0%
AAGAATGAGTAGACGATGCA+TGG + tig0023240:66652-66671 None:intergenic 40.0%
AAGATGGTGAAGAAGTGGAA+TGG + tig0023240:66727-66746 None:intergenic 40.0%
AAAATCACAAGGAATCGACC+GGG - tig0023240:67058-67077 Msa1406720:CDS 40.0%
!!! ATAAGGATTTTAGAACGGCC+GGG + tig0023240:67103-67122 None:intergenic 40.0%
!!! GATAAGGATTTTAGAACGGC+CGG + tig0023240:67104-67123 None:intergenic 40.0%
!! GCCGTTCTAAAATCCTTATC+CGG - tig0023240:67104-67123 Msa1406720:CDS 40.0%
CTAAAATCCTTATCCGGATC+CGG - tig0023240:67110-67129 Msa1406720:CDS 40.0%
TTGTTCGTTTGGGAGGTTTA+CGG + tig0023240:67147-67166 None:intergenic 40.0%
!!! GTTTTTTTGGAGCCATGTGA+GGG + tig0023240:67201-67220 None:intergenic 40.0%
!!! GGTAAACGACGACGTTTTTT+TGG + tig0023240:67214-67233 None:intergenic 40.0%
!! TGGCTTCTATTTGGGTTTTG+GGG + tig0023240:67238-67257 None:intergenic 40.0%
!! GATGGCTTCTATTTGGGTTT+TGG + tig0023240:67240-67259 None:intergenic 40.0%
! TGTGAATGTTTTTCATGGCG+GGG + tig0023240:67316-67335 None:intergenic 40.0%
ATTACGGGTTCTATGAGATC+GGG + tig0023240:67443-67462 None:intergenic 40.0%
! TTGACTCGTAAGCGAAAAAG+GGG + tig0023240:67523-67542 None:intergenic 40.0%
! GTTTGACTCGTAAGCGAAAA+AGG + tig0023240:67525-67544 None:intergenic 40.0%
TAGAGTGGTTGTGAGTGAAA+CGG - tig0023240:67691-67710 Msa1406720:CDS 40.0%
TCATCACTATCACCTTTCGA+AGG + tig0023240:67722-67741 None:intergenic 40.0%
! TTCGAAAGGTGATAGTGATG+AGG - tig0023240:67721-67740 Msa1406720:CDS 40.0%
! AAAGGTGATAGTGATGAGGT+GGG - tig0023240:67725-67744 Msa1406720:CDS 40.0%
ATTCGCATTCGGTCTTAAAG+GGG + tig0023240:67819-67838 None:intergenic 40.0%
GATTCGCATTCGGTCTTAAA+GGG + tig0023240:67820-67839 None:intergenic 40.0%
AGATTCGCATTCGGTCTTAA+AGG + tig0023240:67821-67840 None:intergenic 40.0%
TAAACGGTCAGATTCGCATT+CGG + tig0023240:67830-67849 None:intergenic 40.0%
!! CCAAAATTCCTCTCTGAAGT+AGG + tig0023240:67890-67909 None:intergenic 40.0%
! CCTACTTCAGAGAGGAATTT+TGG - tig0023240:67887-67906 Msa1406720:CDS 40.0%
TCATTATCTTGGGTGTGTCT+AGG - tig0023240:68085-68104 Msa1406720:intron 40.0%
AAGAATGAGTAGACGATGCA+TGG + tig0023240:66652-66671 None:intergenic 40.0%
AAGATGGTGAAGAAGTGGAA+TGG + tig0023240:66727-66746 None:intergenic 40.0%
AAAATCACAAGGAATCGACC+GGG - tig0023240:67058-67077 Msa1406720:CDS 40.0%
!!! ATAAGGATTTTAGAACGGCC+GGG + tig0023240:67103-67122 None:intergenic 40.0%
!!! GATAAGGATTTTAGAACGGC+CGG + tig0023240:67104-67123 None:intergenic 40.0%
!! GCCGTTCTAAAATCCTTATC+CGG - tig0023240:67104-67123 Msa1406720:CDS 40.0%
CTAAAATCCTTATCCGGATC+CGG - tig0023240:67110-67129 Msa1406720:CDS 40.0%
TTGTTCGTTTGGGAGGTTTA+CGG + tig0023240:67147-67166 None:intergenic 40.0%
!!! GTTTTTTTGGAGCCATGTGA+GGG + tig0023240:67201-67220 None:intergenic 40.0%
!!! GGTAAACGACGACGTTTTTT+TGG + tig0023240:67214-67233 None:intergenic 40.0%
!! TGGCTTCTATTTGGGTTTTG+GGG + tig0023240:67238-67257 None:intergenic 40.0%
!! GATGGCTTCTATTTGGGTTT+TGG + tig0023240:67240-67259 None:intergenic 40.0%
! TGTGAATGTTTTTCATGGCG+GGG + tig0023240:67316-67335 None:intergenic 40.0%
ATTACGGGTTCTATGAGATC+GGG + tig0023240:67443-67462 None:intergenic 40.0%
! TTGACTCGTAAGCGAAAAAG+GGG + tig0023240:67523-67542 None:intergenic 40.0%
! GTTTGACTCGTAAGCGAAAA+AGG + tig0023240:67525-67544 None:intergenic 40.0%
TAGAGTGGTTGTGAGTGAAA+CGG - tig0023240:67691-67710 Msa1406720:CDS 40.0%
TCATCACTATCACCTTTCGA+AGG + tig0023240:67722-67741 None:intergenic 40.0%
! TTCGAAAGGTGATAGTGATG+AGG - tig0023240:67721-67740 Msa1406720:CDS 40.0%
! AAAGGTGATAGTGATGAGGT+GGG - tig0023240:67725-67744 Msa1406720:CDS 40.0%
ATTCGCATTCGGTCTTAAAG+GGG + tig0023240:67819-67838 None:intergenic 40.0%
GATTCGCATTCGGTCTTAAA+GGG + tig0023240:67820-67839 None:intergenic 40.0%
AGATTCGCATTCGGTCTTAA+AGG + tig0023240:67821-67840 None:intergenic 40.0%
TAAACGGTCAGATTCGCATT+CGG + tig0023240:67830-67849 None:intergenic 40.0%
!! CCAAAATTCCTCTCTGAAGT+AGG + tig0023240:67890-67909 None:intergenic 40.0%
! CCTACTTCAGAGAGGAATTT+TGG - tig0023240:67887-67906 Msa1406720:CDS 40.0%
TCATTATCTTGGGTGTGTCT+AGG - tig0023240:68085-68104 Msa1406720:intron 40.0%
ATGAGTAGACGATGCATGGT+GGG + tig0023240:66648-66667 None:intergenic 45.0%
AATGAGTAGACGATGCATGG+TGG + tig0023240:66649-66668 None:intergenic 45.0%
GAGGTATGAGGAAATGAGGA+TGG + tig0023240:66676-66695 None:intergenic 45.0%
! GTGAGAGGTATGAGGAAATG+AGG + tig0023240:66680-66699 None:intergenic 45.0%
! TAGTGGAAGTGAGAGGTATG+AGG + tig0023240:66688-66707 None:intergenic 45.0%
GAAGCAATACCTGCAAGTAG+TGG + tig0023240:66705-66724 None:intergenic 45.0%
CTACTTTGAATGCTGAGGGT+AGG + tig0023240:67028-67047 None:intergenic 45.0%
TTTGATTCCGGATCCGGATA+AGG + tig0023240:67120-67139 None:intergenic 45.0%
! GGTTACTTTGATTCCGGATC+CGG + tig0023240:67126-67145 None:intergenic 45.0%
AGAAGAGTTGTTCGTTTGGG+AGG + tig0023240:67154-67173 None:intergenic 45.0%
!!! GAGGGCGTAGGAAAGTTTTT+TGG + tig0023240:67183-67202 None:intergenic 45.0%
!!! CGTTTTTTTGGAGCCATGTG+AGG + tig0023240:67202-67221 None:intergenic 45.0%
!!! CTTCTATTTGGGTTTTGGGG+TGG + tig0023240:67235-67254 None:intergenic 45.0%
CACGAAGACTTCATTACCGA+CGG + tig0023240:67264-67283 None:intergenic 45.0%
CCAATCGCTTTATCTGCTCT+CGG - tig0023240:67383-67402 Msa1406720:CDS 45.0%
TCCTCTTATCCGTCTTCAAC+CGG - tig0023240:67407-67426 Msa1406720:CDS 45.0%
TTGAATGACCCGGTTGAAGA+CGG + tig0023240:67419-67438 None:intergenic 45.0%
TCACGGAGGAAGTTTAGCAT+TGG + tig0023240:67470-67489 None:intergenic 45.0%
! ACCCGGGTTTTCACGAAATA+GGG + tig0023240:67573-67592 None:intergenic 45.0%
! TACCCGGGTTTTCACGAAAT+AGG + tig0023240:67574-67593 None:intergenic 45.0%
TTACCTGGATCCACATTACC+CGG + tig0023240:67590-67609 None:intergenic 45.0%
GGTAATGTGGATCCAGGTAA+CGG - tig0023240:67590-67609 Msa1406720:CDS 45.0%
GTAATGTGGATCCAGGTAAC+GGG - tig0023240:67591-67610 Msa1406720:CDS 45.0%
TCAATACGACGACGTTAGAG+TGG - tig0023240:67676-67695 Msa1406720:CDS 45.0%
AGAGTGGTTGTGAGTGAAAC+GGG - tig0023240:67692-67711 Msa1406720:CDS 45.0%
! GAAAGGTGATAGTGATGAGG+TGG - tig0023240:67724-67743 Msa1406720:CDS 45.0%
TGATGTTCCGTTTACTGTGG+CGG - tig0023240:67940-67959 Msa1406720:CDS 45.0%
GAAGAGTTACCGTGACGTTT+CGG - tig0023240:67967-67986 Msa1406720:CDS 45.0%
!! AGATTTGTTGGGGGAAGCAA+AGG - tig0023240:68250-68269 Msa1406720:intron 45.0%
GCAACTTTCACTACACATGG+AGG + tig0023240:68292-68311 None:intergenic 45.0%
CGTGCAACTTTCACTACACA+TGG + tig0023240:68295-68314 None:intergenic 45.0%
ATGAGTAGACGATGCATGGT+GGG + tig0023240:66648-66667 None:intergenic 45.0%
AATGAGTAGACGATGCATGG+TGG + tig0023240:66649-66668 None:intergenic 45.0%
GAGGTATGAGGAAATGAGGA+TGG + tig0023240:66676-66695 None:intergenic 45.0%
! GTGAGAGGTATGAGGAAATG+AGG + tig0023240:66680-66699 None:intergenic 45.0%
! TAGTGGAAGTGAGAGGTATG+AGG + tig0023240:66688-66707 None:intergenic 45.0%
GAAGCAATACCTGCAAGTAG+TGG + tig0023240:66705-66724 None:intergenic 45.0%
CTACTTTGAATGCTGAGGGT+AGG + tig0023240:67028-67047 None:intergenic 45.0%
TTTGATTCCGGATCCGGATA+AGG + tig0023240:67120-67139 None:intergenic 45.0%
! GGTTACTTTGATTCCGGATC+CGG + tig0023240:67126-67145 None:intergenic 45.0%
AGAAGAGTTGTTCGTTTGGG+AGG + tig0023240:67154-67173 None:intergenic 45.0%
!!! GAGGGCGTAGGAAAGTTTTT+TGG + tig0023240:67183-67202 None:intergenic 45.0%
!!! CGTTTTTTTGGAGCCATGTG+AGG + tig0023240:67202-67221 None:intergenic 45.0%
!!! CTTCTATTTGGGTTTTGGGG+TGG + tig0023240:67235-67254 None:intergenic 45.0%
CACGAAGACTTCATTACCGA+CGG + tig0023240:67264-67283 None:intergenic 45.0%
CCAATCGCTTTATCTGCTCT+CGG - tig0023240:67383-67402 Msa1406720:CDS 45.0%
TCCTCTTATCCGTCTTCAAC+CGG - tig0023240:67407-67426 Msa1406720:CDS 45.0%
TTGAATGACCCGGTTGAAGA+CGG + tig0023240:67419-67438 None:intergenic 45.0%
TCACGGAGGAAGTTTAGCAT+TGG + tig0023240:67470-67489 None:intergenic 45.0%
! ACCCGGGTTTTCACGAAATA+GGG + tig0023240:67573-67592 None:intergenic 45.0%
! TACCCGGGTTTTCACGAAAT+AGG + tig0023240:67574-67593 None:intergenic 45.0%
TTACCTGGATCCACATTACC+CGG + tig0023240:67590-67609 None:intergenic 45.0%
GGTAATGTGGATCCAGGTAA+CGG - tig0023240:67590-67609 Msa1406720:CDS 45.0%
GTAATGTGGATCCAGGTAAC+GGG - tig0023240:67591-67610 Msa1406720:CDS 45.0%
TCAATACGACGACGTTAGAG+TGG - tig0023240:67676-67695 Msa1406720:CDS 45.0%
AGAGTGGTTGTGAGTGAAAC+GGG - tig0023240:67692-67711 Msa1406720:CDS 45.0%
! GAAAGGTGATAGTGATGAGG+TGG - tig0023240:67724-67743 Msa1406720:CDS 45.0%
TGATGTTCCGTTTACTGTGG+CGG - tig0023240:67940-67959 Msa1406720:CDS 45.0%
GAAGAGTTACCGTGACGTTT+CGG - tig0023240:67967-67986 Msa1406720:CDS 45.0%
!! AGATTTGTTGGGGGAAGCAA+AGG - tig0023240:68250-68269 Msa1406720:intron 45.0%
GCAACTTTCACTACACATGG+AGG + tig0023240:68292-68311 None:intergenic 45.0%
CGTGCAACTTTCACTACACA+TGG + tig0023240:68295-68314 None:intergenic 45.0%
! AGACGATGCATGGTGGGATA+GGG + tig0023240:66642-66661 None:intergenic 50.0%
! TAGACGATGCATGGTGGGAT+AGG + tig0023240:66643-66662 None:intergenic 50.0%
! CTGCAAGTAGTGGAAGTGAG+AGG + tig0023240:66695-66714 None:intergenic 50.0%
CTCTCACTTCCACTACTTGC+AGG - tig0023240:66693-66712 Msa1406720:three_prime_UTR 50.0%
GCGACCATAGTTCACTCCAA+TGG + tig0023240:66994-67013 None:intergenic 50.0%
AACTTTCCTACGCCCTCACA+TGG - tig0023240:67186-67205 Msa1406720:CDS 50.0%
GACGGCGATGGCTTCTATTT+GGG + tig0023240:67246-67265 None:intergenic 50.0%
CAAATAGAAGCCATCGCCGT+CGG - tig0023240:67245-67264 Msa1406720:CDS 50.0%
CGTCGGTAATGAAGTCTTCG+TGG - tig0023240:67262-67281 Msa1406720:CDS 50.0%
!! TGTTTTTCATGGCGGGGATG+AGG + tig0023240:67310-67329 None:intergenic 50.0%
CCGAGAGCAGATAAAGCGAT+TGG + tig0023240:67386-67405 None:intergenic 50.0%
CCTCTTATCCGTCTTCAACC+GGG - tig0023240:67408-67427 Msa1406720:CDS 50.0%
GAGATCGGGTTTGAATGACC+CGG + tig0023240:67429-67448 None:intergenic 50.0%
AATACGACGACGTTTCACGG+AGG + tig0023240:67484-67503 None:intergenic 50.0%
CGCCCTATTTCGTGAAAACC+CGG - tig0023240:67568-67587 Msa1406720:CDS 50.0%
GCCCTATTTCGTGAAAACCC+GGG - tig0023240:67569-67588 Msa1406720:CDS 50.0%
TCGTGAAAACCCGGGTAATG+TGG - tig0023240:67577-67596 Msa1406720:CDS 50.0%
TACCTGGATCCACATTACCC+GGG + tig0023240:67589-67608 None:intergenic 50.0%
TGGTTGTGAGTGAAACGGGT+TGG - tig0023240:67696-67715 Msa1406720:CDS 50.0%
AAGTGGGACCTACTTCAGAG+AGG - tig0023240:67879-67898 Msa1406720:CDS 50.0%
GATGTTCCGTTTACTGTGGC+GGG - tig0023240:67941-67960 Msa1406720:CDS 50.0%
ATGTTCCGTTTACTGTGGCG+GGG - tig0023240:67942-67961 Msa1406720:CDS 50.0%
TTCAACCCCGCCACAGTAAA+CGG + tig0023240:67950-67969 None:intergenic 50.0%
! AGACGATGCATGGTGGGATA+GGG + tig0023240:66642-66661 None:intergenic 50.0%
! TAGACGATGCATGGTGGGAT+AGG + tig0023240:66643-66662 None:intergenic 50.0%
! CTGCAAGTAGTGGAAGTGAG+AGG + tig0023240:66695-66714 None:intergenic 50.0%
CTCTCACTTCCACTACTTGC+AGG - tig0023240:66693-66712 Msa1406720:three_prime_UTR 50.0%
GCGACCATAGTTCACTCCAA+TGG + tig0023240:66994-67013 None:intergenic 50.0%
AACTTTCCTACGCCCTCACA+TGG - tig0023240:67186-67205 Msa1406720:CDS 50.0%
GACGGCGATGGCTTCTATTT+GGG + tig0023240:67246-67265 None:intergenic 50.0%
CAAATAGAAGCCATCGCCGT+CGG - tig0023240:67245-67264 Msa1406720:CDS 50.0%
CGTCGGTAATGAAGTCTTCG+TGG - tig0023240:67262-67281 Msa1406720:CDS 50.0%
!! TGTTTTTCATGGCGGGGATG+AGG + tig0023240:67310-67329 None:intergenic 50.0%
CCGAGAGCAGATAAAGCGAT+TGG + tig0023240:67386-67405 None:intergenic 50.0%
CCTCTTATCCGTCTTCAACC+GGG - tig0023240:67408-67427 Msa1406720:CDS 50.0%
GAGATCGGGTTTGAATGACC+CGG + tig0023240:67429-67448 None:intergenic 50.0%
AATACGACGACGTTTCACGG+AGG + tig0023240:67484-67503 None:intergenic 50.0%
CGCCCTATTTCGTGAAAACC+CGG - tig0023240:67568-67587 Msa1406720:CDS 50.0%
GCCCTATTTCGTGAAAACCC+GGG - tig0023240:67569-67588 Msa1406720:CDS 50.0%
TCGTGAAAACCCGGGTAATG+TGG - tig0023240:67577-67596 Msa1406720:CDS 50.0%
TACCTGGATCCACATTACCC+GGG + tig0023240:67589-67608 None:intergenic 50.0%
TGGTTGTGAGTGAAACGGGT+TGG - tig0023240:67696-67715 Msa1406720:CDS 50.0%
AAGTGGGACCTACTTCAGAG+AGG - tig0023240:67879-67898 Msa1406720:CDS 50.0%
GATGTTCCGTTTACTGTGGC+GGG - tig0023240:67941-67960 Msa1406720:CDS 50.0%
ATGTTCCGTTTACTGTGGCG+GGG - tig0023240:67942-67961 Msa1406720:CDS 50.0%
TTCAACCCCGCCACAGTAAA+CGG + tig0023240:67950-67969 None:intergenic 50.0%
!! CGGTGTCGTAGAGTTTGACC+CGG + tig0023240:67079-67098 None:intergenic 55.0%
CAAACTCTACGACACCGACC+CGG - tig0023240:67082-67101 Msa1406720:CDS 55.0%
!!! GGATTTTAGAACGGCCGGGT+CGG + tig0023240:67099-67118 None:intergenic 55.0%
CGACGGCGATGGCTTCTATT+TGG + tig0023240:67247-67266 None:intergenic 55.0%
GACTTCATTACCGACGGCGA+TGG + tig0023240:67258-67277 None:intergenic 55.0%
! CATGGCGGGGATGAGGTATT+TGG + tig0023240:67303-67322 None:intergenic 55.0%
CCCGGTTGAAGACGGATAAG+AGG + tig0023240:67411-67430 None:intergenic 55.0%
AACCCGGGTAATGTGGATCC+AGG - tig0023240:67584-67603 Msa1406720:CDS 55.0%
!! GAAACGGGTTGGCCTTCGAA+AGG - tig0023240:67707-67726 Msa1406720:CDS 55.0%
TGTACGCAGCAGCGTTCTGT+GGG + tig0023240:67757-67776 None:intergenic 55.0%
TTGTACGCAGCAGCGTTCTG+TGG + tig0023240:67758-67777 None:intergenic 55.0%
CAGAACGCTGCTGCGTACAA+CGG - tig0023240:67758-67777 Msa1406720:CDS 55.0%
TCTTGGGTGTGTCTAGGTCG+AGG - tig0023240:68091-68110 Msa1406720:intron 55.0%
!! CGGTGTCGTAGAGTTTGACC+CGG + tig0023240:67079-67098 None:intergenic 55.0%
CAAACTCTACGACACCGACC+CGG - tig0023240:67082-67101 Msa1406720:CDS 55.0%
!!! GGATTTTAGAACGGCCGGGT+CGG + tig0023240:67099-67118 None:intergenic 55.0%
CGACGGCGATGGCTTCTATT+TGG + tig0023240:67247-67266 None:intergenic 55.0%
GACTTCATTACCGACGGCGA+TGG + tig0023240:67258-67277 None:intergenic 55.0%
! CATGGCGGGGATGAGGTATT+TGG + tig0023240:67303-67322 None:intergenic 55.0%
CCCGGTTGAAGACGGATAAG+AGG + tig0023240:67411-67430 None:intergenic 55.0%
AACCCGGGTAATGTGGATCC+AGG - tig0023240:67584-67603 Msa1406720:CDS 55.0%
!! GAAACGGGTTGGCCTTCGAA+AGG - tig0023240:67707-67726 Msa1406720:CDS 55.0%
TGTACGCAGCAGCGTTCTGT+GGG + tig0023240:67757-67776 None:intergenic 55.0%
TTGTACGCAGCAGCGTTCTG+TGG + tig0023240:67758-67777 None:intergenic 55.0%
CAGAACGCTGCTGCGTACAA+CGG - tig0023240:67758-67777 Msa1406720:CDS 55.0%
TCTTGGGTGTGTCTAGGTCG+AGG - tig0023240:68091-68110 Msa1406720:intron 55.0%
! TTGGAGCCATGTGAGGGCGT+AGG + tig0023240:67195-67214 None:intergenic 60.0%
! GGCGGGGATGAGGTATTTGG+TGG + tig0023240:67300-67319 None:intergenic 60.0%
GTACGCAGCAGCGTTCTGTG+GGG + tig0023240:67756-67775 None:intergenic 60.0%
TTACCGTGACGTTTCGGCGC+CGG - tig0023240:67973-67992 Msa1406720:CDS 60.0%
AGTTCTGCTCAGCCGCTTCC+CGG + tig0023240:67995-68014 None:intergenic 60.0%
! TTGGAGCCATGTGAGGGCGT+AGG + tig0023240:67195-67214 None:intergenic 60.0%
! GGCGGGGATGAGGTATTTGG+TGG + tig0023240:67300-67319 None:intergenic 60.0%
GTACGCAGCAGCGTTCTGTG+GGG + tig0023240:67756-67775 None:intergenic 60.0%
TTACCGTGACGTTTCGGCGC+CGG - tig0023240:67973-67992 Msa1406720:CDS 60.0%
AGTTCTGCTCAGCCGCTTCC+CGG + tig0023240:67995-68014 None:intergenic 60.0%
TACCGTGACGTTTCGGCGCC+GGG - tig0023240:67974-67993 Msa1406720:CDS 65.0%
! TTCCCGGCGCCGAAACGTCA+CGG + tig0023240:67979-67998 None:intergenic 65.0%
TACCGTGACGTTTCGGCGCC+GGG - tig0023240:67974-67993 Msa1406720:CDS 65.0%
! TTCCCGGCGCCGAAACGTCA+CGG + tig0023240:67979-67998 None:intergenic 65.0%
! GACGTTTCGGCGCCGGGAAG+CGG - tig0023240:67980-67999 Msa1406720:CDS 70.0%
! GACGTTTCGGCGCCGGGAAG+CGG - tig0023240:67980-67999 Msa1406720:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0023240 gene 66615 68421 66615 ID=Msa1406720;Name=Msa1406720
tig0023240 mRNA 66615 68421 66615 ID=Msa1406720-mRNA-1;Parent=Msa1406720;Name=Msa1406720-mRNA-1;_AED=0.02;_eAED=0.02;_QI=36|1|1|1|1|1|2|415|362
tig0023240 exon 66615 68054 66615 ID=Msa1406720-mRNA-1:exon:24732;Parent=Msa1406720-mRNA-1
tig0023240 exon 68322 68421 68322 ID=Msa1406720-mRNA-1:exon:24731;Parent=Msa1406720-mRNA-1
tig0023240 five_prime_UTR 68386 68421 68386 ID=Msa1406720-mRNA-1:five_prime_utr;Parent=Msa1406720-mRNA-1
tig0023240 CDS 68322 68385 68322 ID=Msa1406720-mRNA-1:cds;Parent=Msa1406720-mRNA-1
tig0023240 CDS 67030 68054 67030 ID=Msa1406720-mRNA-1:cds;Parent=Msa1406720-mRNA-1
tig0023240 three_prime_UTR 66615 67029 66615 ID=Msa1406720-mRNA-1:three_prime_utr;Parent=Msa1406720-mRNA-1
Gene Sequence

>Msa1406720

ATGCATCGTCTACTCATTCTTTCCATCCTCATTTCCTCATACCTCTCACTTCCACTACTTGCAGATGGTAATTCCATTGGAGTGAACTATGGTCGCATAGCAAACAACCTACCCTCAGCATTCAAAGTAGTTAAGCTTCTAAAATCACAAGGAATCGACCGGGTCAAACTCTACGACACCGACCCGGCCGTTCTAAAATCCTTATCCGGATCCGGAATCAAAGTAACCGTAAACCTCCCAAACGAACAACTCTTCTATACAGCCAAAAAACTTTCCTACGCCCTCACATGGCTCCAAAAAAACGTCGTCGTTTACCACCCCAAAACCCAAATAGAAGCCATCGCCGTCGGTAATGAAGTCTTCGTGGACACACACAACACCACCAAATACCTCATCCCCGCCATGAAAAACATTCACAAAGCTTTAATCAAATTCAACCTCCACAATTCCATCAAAATCTCTTCACCAATCGCTTTATCTGCTCTCGGATCCTCTTATCCGTCTTCAACCGGGTCATTCAAACCCGATCTCATAGAACCCGTAATTAAACCAATGCTAAACTTCCTCCGTGAAACGTCGTCGTATTTAATGGTCAACGTTTACCCCTTTTTCGCTTACGAGTCAAACGCTGATGTCATTTCATTAAACTACGCCCTATTTCGTGAAAACCCGGGTAATGTGGATCCAGGTAACGGGTTAAAATACTACAACATCTTCGACGCGCAAATCGACGCTGTTTTTGCAGCGCTTAACGCGCTTCAATACGACGACGTTAGAGTGGTTGTGAGTGAAACGGGTTGGCCTTCGAAAGGTGATAGTGATGAGGTGGGTGCGTCCCCACAGAACGCTGCTGCGTACAACGGTAATCTTGTTAAGAAGATTCTGAATAACGGTGGGACCCCTTTAAGACCGAATGCGAATCTGACCGTTTATTTATTTGCGCTTTTTAATGAAAATGGGAAAGTGGGACCTACTTCAGAGAGGAATTTTGGGATGTTTTATCCTGATATGAAGAAAGTTTATGATGTTCCGTTTACTGTGGCGGGGTTGAAGAGTTACCGTGACGTTTCGGCGCCGGGAAGCGGCTGA

Protein sequence

>Msa1406720

MHRLLILSILISSYLSLPLLADGNSIGVNYGRIANNLPSAFKVVKLLKSQGIDRVKLYDTDPAVLKSLSGSGIKVTVNLPNEQLFYTAKKLSYALTWLQKNVVVYHPKTQIEAIAVGNEVFVDTHNTTKYLIPAMKNIHKALIKFNLHNSIKISSPIALSALGSSYPSSTGSFKPDLIEPVIKPMLNFLRETSSYLMVNVYPFFAYESNADVISLNYALFRENPGNVDPGNGLKYYNIFDAQIDAVFAALNALQYDDVRVVVSETGWPSKGDSDEVGASPQNAAAYNGNLVKKILNNGGTPLRPNANLTVYLFALFNENGKVGPTSERNFGMFYPDMKKVYDVPFTVAGLKSYRDVSAPGSG*