AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0466520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0466520 MtrunA17_Chr3g0119541 96.685 362 12 0 1 362 1 362 0.0 707
Msa0466520 MtrunA17_Chr5g0439251 74.269 342 88 0 20 361 19 360 0.0 530
Msa0466520 MtrunA17_Chr1g0177171 66.972 327 108 0 22 348 34 360 1.13e-159 457
Msa0466520 MtrunA17_Chr1g0189111 49.697 330 162 4 19 347 24 350 6.97e-103 309
Msa0466520 MtrunA17_Chr4g0026321 47.164 335 165 5 22 353 25 350 3.90e-101 303
Msa0466520 MtrunA17_Chr4g0043851 44.321 361 191 5 3 362 11 362 7.62e-100 301
Msa0466520 MtrunA17_Chr2g0321511 44.048 336 183 3 9 343 12 343 4.73e-96 291
Msa0466520 MtrunA17_Chr4g0003281 44.986 349 186 4 4 351 20 363 1.16e-94 288
Msa0466520 MtrunA17_Chr8g0389741 42.727 330 188 1 20 349 22 350 2.79e-94 290
Msa0466520 MtrunA17_Chr2g0285901 45.322 342 179 6 7 343 1 339 1.09e-92 282
Msa0466520 MtrunA17_Chr6g0487261 41.429 350 203 2 1 349 1 349 3.86e-92 285
Msa0466520 MtrunA17_Chr1g0146831 44.242 330 177 4 15 342 20 344 9.70e-92 279
Msa0466520 MtrunA17_Chr7g0234821 43.614 321 176 4 27 343 27 346 6.44e-91 280
Msa0466520 MtrunA17_Chr4g0034901 42.982 342 188 4 4 343 10 346 7.10e-90 277
Msa0466520 MtrunA17_Chr1g0161011 41.714 350 199 3 4 349 1 349 1.86e-89 277
Msa0466520 MtrunA17_Chr8g0339191 40.698 344 199 4 4 343 7 349 2.60e-88 273
Msa0466520 MtrunA17_Chr3g0110371 42.210 353 194 4 1 349 3 349 4.75e-88 273
Msa0466520 MtrunA17_Chr3g0144531 43.252 326 182 3 20 343 21 345 9.86e-88 272
Msa0466520 MtrunA17_Chr4g0046311 39.306 346 203 3 7 346 4 348 2.16e-86 269
Msa0466520 MtrunA17_Chr1g0155001 42.812 320 180 3 26 343 24 342 2.86e-85 264
Msa0466520 MtrunA17_Chr4g0075031 40.449 356 193 4 4 341 8 362 4.52e-85 267
Msa0466520 MtrunA17_Chr4g0064021 43.125 320 180 2 27 345 27 345 7.81e-85 262
Msa0466520 MtrunA17_Chr5g0434591 41.964 336 186 3 1 333 3 332 2.58e-83 261
Msa0466520 MtrunA17_Chr3g0121271 38.415 328 197 3 23 346 23 349 1.83e-81 257
Msa0466520 MtrunA17_Chr7g0223961 43.302 321 173 6 24 342 21 334 3.08e-81 254
Msa0466520 MtrunA17_Chr4g0043511 43.824 340 180 8 26 362 62 393 5.81e-80 254
Msa0466520 MtrunA17_Chr4g0039071 42.368 321 178 4 23 343 22 335 2.97e-79 247
Msa0466520 MtrunA17_Chr8g0378621 38.261 345 202 3 4 345 11 347 8.71e-79 250
Msa0466520 MtrunA17_Chr4g0038981 42.056 321 172 8 25 345 22 328 7.86e-77 239
Msa0466520 MtrunA17_Chr4g0039011 41.742 333 181 7 25 357 41 360 7.53e-76 238
Msa0466520 MtrunA17_Chr4g0038941 42.901 324 165 8 25 345 51 357 1.03e-75 238
Msa0466520 MtrunA17_Chr4g0038971 41.543 337 182 9 10 345 6 328 1.19e-74 234
Msa0466520 MtrunA17_Chr4g0038961 42.547 322 169 9 25 345 22 328 2.40e-74 233
Msa0466520 MtrunA17_Chr2g0294591 39.755 327 184 8 25 349 29 344 1.33e-70 224
Msa0466520 MtrunA17_Chr2g0294601 40.964 332 179 10 25 352 58 376 3.57e-68 219
Msa0466520 MtrunA17_Chr4g0039021 40.493 284 160 4 52 335 7 281 4.93e-66 211
Msa0466520 MtrunA17_Chr1g0174261 41.379 290 161 5 55 343 1 282 5.21e-65 209
Msa0466520 MtrunA17_Chr7g0250301 37.342 316 189 6 26 341 8 314 1.09e-64 208
Msa0466520 MtrunA17_Chr4g0076581 36.443 343 203 11 6 341 14 348 2.48e-56 191
Msa0466520 MtrunA17_Chr2g0290821 37.349 332 194 9 20 343 22 347 8.46e-55 187
Msa0466520 MtrunA17_Chr4g0062771 35.328 351 209 11 2 343 9 350 5.39e-53 182
Msa0466520 MtrunA17_Chr7g0250321 37.500 296 171 7 1 292 1 286 3.11e-52 175
Msa0466520 MtrunA17_Chr8g0383311 33.837 331 205 10 26 349 43 366 3.11e-51 177
Msa0466520 MtrunA17_Chr7g0253091 34.097 349 205 13 1 336 1 337 2.59e-50 175
Msa0466520 MtrunA17_Chr1g0148391 36.391 327 190 11 26 343 26 343 4.04e-50 174
Msa0466520 MtrunA17_Chr4g0069801 34.358 358 210 13 4 352 11 352 1.00e-49 174
Msa0466520 MtrunA17_Chr3g0138741 35.736 333 198 11 19 343 24 348 8.31e-49 171
Msa0466520 MtrunA17_Chr6g0461601 36.778 329 179 14 26 338 26 341 1.78e-48 170
Msa0466520 MtrunA17_Chr3g0129341 32.386 352 217 15 9 349 14 355 1.93e-44 159
Msa0466520 MtrunA17_Chr5g0436361 32.131 305 195 8 42 342 53 349 3.84e-44 156
Msa0466520 MtrunA17_Chr3g0105981 33.846 325 201 9 25 343 26 342 1.85e-42 153
Msa0466520 MtrunA17_Chr2g0306311 32.203 354 196 12 26 343 30 375 2.94e-42 154
Msa0466520 MtrunA17_Chr2g0294581 38.931 131 78 1 25 153 75 205 1.05e-22 96.3
Msa0466520 MtrunA17_Chr2g0294581 40.816 98 50 5 243 339 187 277 2.39e-13 69.7
Msa0466520 MtrunA17_Chr4g0018771 45.977 87 42 2 257 343 94 175 1.59e-16 77.8
Msa0466520 MtrunA17_Chr4g0018771 45.161 62 34 0 23 84 23 84 1.68e-11 63.2
Msa0466520 MtrunA17_Chr4g0018861 45.977 87 42 2 257 343 92 173 4.38e-16 76.6
Msa0466520 MtrunA17_Chr4g0018861 45.902 61 33 0 24 84 20 80 1.85e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0466520 AT2G05790.1 73.653 334 88 0 22 355 21 354 0.0 534
Msa0466520 AT5G55180.2 68.421 323 102 0 21 343 22 344 1.36e-158 453
Msa0466520 AT5G55180.1 68.421 323 102 0 21 343 22 344 1.55e-158 453
Msa0466520 AT4G26830.1 64.201 338 119 2 9 346 9 344 5.10e-149 428
Msa0466520 AT4G26830.2 65.231 325 112 1 22 346 25 348 8.54e-149 428
Msa0466520 AT1G32860.1 48.466 326 163 4 25 347 28 351 3.94e-104 313
Msa0466520 AT2G27500.2 46.386 332 171 3 23 353 26 351 9.31e-100 300
Msa0466520 AT2G27500.1 46.386 332 171 3 23 353 26 351 2.15e-99 300
Msa0466520 AT5G42100.2 47.748 333 166 6 15 343 18 346 2.28e-97 296
Msa0466520 AT1G30080.2 45.115 348 182 4 3 343 7 352 2.71e-97 294
Msa0466520 AT4G18340.2 44.957 347 182 4 8 347 10 354 3.27e-97 294
Msa0466520 AT5G42100.1 47.748 333 166 6 15 343 18 346 3.91e-97 295
Msa0466520 AT1G30080.1 45.115 348 182 4 3 343 7 352 3.93e-97 295
Msa0466520 AT4G18340.1 45.087 346 181 4 8 346 10 353 5.79e-97 294
Msa0466520 AT5G24318.4 45.794 321 167 4 25 343 29 344 7.86e-96 290
Msa0466520 AT5G24318.2 44.543 339 181 4 25 361 29 362 1.24e-94 290
Msa0466520 AT5G24318.1 44.543 339 181 4 25 361 29 362 1.67e-94 290
Msa0466520 AT3G15800.1 47.256 328 168 4 27 352 44 368 2.41e-94 287
Msa0466520 AT2G16230.1 45.031 322 175 2 26 346 25 345 1.61e-92 286
Msa0466520 AT5G42720.1 44.638 345 182 4 4 346 10 347 8.40e-92 282
Msa0466520 AT2G26600.1 43.114 334 185 3 16 345 21 353 8.74e-90 275
Msa0466520 AT5G56590.1 41.411 326 188 3 23 346 23 347 1.06e-87 273
Msa0466520 AT4G29360.2 43.440 343 191 2 6 346 15 356 2.20e-87 274
Msa0466520 AT4G34480.2 44.828 319 174 2 26 343 26 343 1.12e-86 266
Msa0466520 AT4G29360.1 41.739 345 200 1 2 346 3 346 2.72e-86 271
Msa0466520 AT4G14080.1 41.088 331 191 3 19 346 35 364 1.14e-85 267
Msa0466520 AT4G34480.1 44.828 319 174 2 26 343 26 343 1.03e-84 266
Msa0466520 AT2G01630.2 41.284 327 188 2 26 349 23 348 2.39e-84 261
Msa0466520 AT2G01630.3 41.284 327 188 2 26 349 23 348 3.65e-84 262
Msa0466520 AT3G07320.1 40.841 333 190 5 27 355 26 355 3.90e-84 263
Msa0466520 AT3G23770.1 40.176 341 195 4 19 353 30 367 1.71e-83 262
Msa0466520 AT2G01630.1 41.284 327 188 2 26 349 23 348 3.29e-83 262
Msa0466520 AT1G66250.1 40.896 335 193 3 18 349 24 356 3.32e-83 262
Msa0466520 AT3G13560.4 40.549 328 189 4 19 341 17 343 6.60e-81 256
Msa0466520 AT3G13560.1 40.549 328 189 4 19 341 17 343 6.60e-81 256
Msa0466520 AT3G13560.2 40.549 328 189 4 19 341 17 343 6.60e-81 256
Msa0466520 AT3G13560.5 40.549 328 189 4 19 341 17 343 6.60e-81 256
Msa0466520 AT3G13560.3 40.549 328 189 4 19 341 17 343 6.60e-81 256
Msa0466520 AT1G11820.1 39.812 319 188 3 26 341 44 361 2.20e-80 251
Msa0466520 AT1G11820.3 39.812 319 188 3 26 341 44 361 2.34e-79 251
Msa0466520 AT1G11820.2 39.812 319 188 3 26 341 44 361 7.74e-79 251
Msa0466520 AT2G27500.3 44.604 278 147 3 77 353 2 273 1.98e-78 243
Msa0466520 AT4G16260.1 39.420 345 197 7 4 348 5 337 2.29e-75 236
Msa0466520 AT3G57270.1 40.615 325 182 7 23 345 24 339 5.37e-72 228
Msa0466520 AT3G55430.1 39.286 336 185 12 14 343 19 341 7.53e-71 228
Msa0466520 AT3G46570.1 41.714 350 183 12 1 343 7 342 8.01e-71 225
Msa0466520 AT4G16260.2 40.190 316 180 6 33 348 2 308 3.01e-70 223
Msa0466520 AT3G61810.1 37.690 329 186 5 26 346 55 372 3.47e-69 222
Msa0466520 AT2G26600.2 42.913 254 143 2 93 345 7 259 5.10e-69 219
Msa0466520 AT1G77780.1 39.359 343 193 9 4 343 2 332 5.89e-65 210
Msa0466520 AT3G57260.1 37.427 342 197 8 4 345 14 338 1.87e-64 208
Msa0466520 AT3G57260.2 37.427 342 197 8 4 345 30 354 4.12e-64 208
Msa0466520 AT5G24318.3 44.493 227 122 1 135 361 1 223 3.12e-63 204
Msa0466520 AT2G39640.1 36.337 344 205 10 3 343 6 338 2.54e-61 206
Msa0466520 AT4G34480.3 47.186 231 120 2 114 343 3 232 9.72e-59 195
Msa0466520 AT1G77790.1 36.152 343 209 7 3 343 7 341 1.92e-58 193
Msa0466520 AT3G57240.1 36.875 320 188 8 26 345 35 340 3.86e-58 192
Msa0466520 AT5G20390.1 36.364 341 205 9 3 341 11 341 7.20e-58 191
Msa0466520 AT5G20330.1 38.838 327 189 8 19 343 27 344 2.20e-57 190
Msa0466520 AT5G20340.1 37.764 331 193 9 16 343 33 353 5.20e-55 184
Msa0466520 AT3G24330.1 33.520 358 219 12 2 349 16 364 1.58e-53 184
Msa0466520 AT1G33220.1 36.012 336 196 7 9 343 17 334 2.16e-52 177
Msa0466520 AT5G18220.1 34.181 354 213 11 5 351 13 353 1.01e-51 179
Msa0466520 AT2G19440.2 35.380 342 197 14 19 349 16 344 3.26e-51 177
Msa0466520 AT2G19440.1 35.380 342 197 14 19 349 16 344 3.26e-51 177
Msa0466520 AT3G55780.1 29.375 320 216 7 42 356 51 365 2.51e-50 173
Msa0466520 AT1G64760.1 35.000 340 201 14 24 353 23 352 7.26e-50 174
Msa0466520 AT1G64760.2 35.000 340 201 14 24 353 23 352 7.26e-50 174
Msa0466520 AT4G17180.1 34.111 343 205 11 24 357 23 353 1.08e-49 173
Msa0466520 AT5G58090.1 36.111 324 185 13 24 336 20 332 9.73e-48 168
Msa0466520 AT5G64790.1 33.898 354 216 11 4 349 8 351 6.76e-47 166
Msa0466520 AT3G04010.1 32.773 357 220 12 6 353 15 360 1.15e-46 166
Msa0466520 AT4G31140.1 33.718 347 213 13 19 356 20 358 2.25e-46 165
Msa0466520 AT5G20870.1 33.333 351 208 14 2 336 7 347 4.83e-45 161
Msa0466520 AT5G20560.1 32.836 335 212 9 4 335 12 336 2.49e-43 153
Msa0466520 AT5G58480.1 33.131 329 204 9 25 345 25 345 9.89e-43 155

Find 118 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTACTTCAGAGAGGAATTT+TGG 0.105755 3_3:+67251585 Msa0466520:CDS
GTTTGACTCGTAAGCGAAAA+AGG 0.189514 3_3:-67251220 None:intergenic
GATGGCTTCTATTTGGGTTT+TGG 0.211284 3_3:-67250935 None:intergenic
CGACGGCGATGGCTTCTATT+TGG 0.212947 3_3:-67250942 None:intergenic
ATATCTGCAAAATGAAATTT+AGG 0.220474 3_3:-67251849 None:intergenic
CATGGCGGGGATGAGGTATT+TGG 0.229684 3_3:-67250998 None:intergenic
AAACATGTTAGTATGTTAAT+TGG 0.237975 3_3:+67251913 Msa0466520:three_prime_UTR
TCGAGGTTGAGAATATAATT+TGG 0.241683 3_3:+67251806 Msa0466520:three_prime_UTR
CTAATATTTGTTAGATTTGT+TGG 0.271362 3_3:+67251936 Msa0466520:three_prime_UTR
TCCTCTTATCCGTCTTCAAC+CGG 0.271730 3_3:+67251105 Msa0466520:CDS
TGAAACGTCGTCGTATTTAA+TGG 0.286292 3_3:+67251185 Msa0466520:CDS
TCATAAACTTTCTTCATATC+AGG 0.295925 3_3:-67251618 None:intergenic
GACGGCGATGGCTTCTATTT+GGG 0.306420 3_3:-67250941 None:intergenic
TTATGATCAGTTCATTATCT+TGG 0.322108 3_3:+67251772 Msa0466520:three_prime_UTR
AGATTCGCATTCGGTCTTAA+AGG 0.324788 3_3:-67251516 None:intergenic
CGAGGTTGAGAATATAATTT+GGG 0.329120 3_3:+67251807 Msa0466520:three_prime_UTR
TTTAGCATTGGTTTAATTAC+GGG 0.335880 3_3:-67251153 None:intergenic
TAATATTTGTTAGATTTGTT+GGG 0.346495 3_3:+67251937 Msa0466520:three_prime_UTR
TATGATCAGTTCATTATCTT+GGG 0.350524 3_3:+67251773 Msa0466520:three_prime_UTR
TTGTATCACATTAATTCATA+TGG 0.352912 3_3:-67252073 None:intergenic
GTTTAGCATTGGTTTAATTA+CGG 0.353752 3_3:-67251154 None:intergenic
GATTCGCATTCGGTCTTAAA+GGG 0.355739 3_3:-67251515 None:intergenic
CTCTCACTTCCACTACTTGC+AGG 0.379057 3_3:+67250391 Msa0466520:CDS
AGTTCTGCTCAGCCGCTTCC+CGG 0.386123 3_3:-67251690 None:intergenic
GTTTACGGTTACTTTGATTC+CGG 0.388759 3_3:-67250827 None:intergenic
TTCAACCCCGCCACAGTAAA+CGG 0.391365 3_3:-67251645 None:intergenic
TACCGTGACGTTTCGGCGCC+GGG 0.395980 3_3:+67251672 Msa0466520:CDS
GACGTTTCGGCGCCGGGAAG+CGG 0.399867 3_3:+67251678 Msa0466520:CDS
TTGTTCGTTTGGGAGGTTTA+CGG 0.405496 3_3:-67250842 None:intergenic
TATAGAAGAGTTGTTCGTTT+GGG 0.414891 3_3:-67250852 None:intergenic
TTTGATTCCGGATCCGGATA+AGG 0.415353 3_3:-67250815 None:intergenic
GAAGAGTTACCGTGACGTTT+CGG 0.420176 3_3:+67251665 Msa0466520:CDS
AATTCCATTGGAGTGAACTA+TGG 0.424527 3_3:+67250685 Msa0466520:CDS
GATGTTCCGTTTACTGTGGC+GGG 0.429934 3_3:+67251639 Msa0466520:CDS
CGCCCTATTTCGTGAAAACC+CGG 0.430387 3_3:+67251266 Msa0466520:CDS
GGTTACTTTGATTCCGGATC+CGG 0.435065 3_3:-67250821 None:intergenic
TAGACGATGCATGGTGGGAT+AGG 0.436707 3_3:-67250338 None:intergenic
GTTACAGATGGTAATTCCAT+TGG 0.459097 3_3:+67250673 Msa0466520:intron
ATTACGGGTTCTATGAGATC+GGG 0.459527 3_3:-67251138 None:intergenic
TAGTGGAAGTGAGAGGTATG+AGG 0.464913 3_3:-67250383 None:intergenic
CCCGGTTGAAGACGGATAAG+AGG 0.467032 3_3:-67251106 None:intergenic
TTAAATACGACGACGTTTCA+CGG 0.468689 3_3:-67251182 None:intergenic
CTAAAATCCTTATCCGGATC+CGG 0.470230 3_3:+67250808 Msa0466520:CDS
GTGAGAGGTATGAGGAAATG+AGG 0.472680 3_3:-67250375 None:intergenic
TTACCTGGATCCACATTACC+CGG 0.476178 3_3:-67251285 None:intergenic
TCATTATCTTGGGTGTGTCT+AGG 0.480062 3_3:+67251783 Msa0466520:three_prime_UTR
AGAGTGGTTGTGAGTGAAAC+GGG 0.485100 3_3:+67251390 Msa0466520:CDS
GTATAGAAGAGTTGTTCGTT+TGG 0.487771 3_3:-67250853 None:intergenic
TTGTACGCAGCAGCGTTCTG+TGG 0.488748 3_3:-67251453 None:intergenic
AATTACGGGTTCTATGAGAT+CGG 0.488872 3_3:-67251139 None:intergenic
TTACCGTGACGTTTCGGCGC+CGG 0.490715 3_3:+67251671 Msa0466520:CDS
TTTAATGAAAATGGGAAAGT+GGG 0.491545 3_3:+67251561 Msa0466520:CDS
TGTACGCAGCAGCGTTCTGT+GGG 0.494413 3_3:-67251452 None:intergenic
CCAAAATTCCTCTCTGAAGT+AGG 0.497611 3_3:-67251585 None:intergenic
TAAAATCACAAGGAATCGAC+CGG 0.501310 3_3:+67250755 Msa0466520:CDS
GCCGTTCTAAAATCCTTATC+CGG 0.508050 3_3:+67250802 Msa0466520:CDS
TAGAGTGGTTGTGAGTGAAA+CGG 0.511502 3_3:+67251389 Msa0466520:CDS
GTTAAGAAGATTCTGAATAA+CGG 0.515251 3_3:+67251486 Msa0466520:CDS
AACCCGGGTAATGTGGATCC+AGG 0.516502 3_3:+67251282 Msa0466520:CDS
AATATTTGTTAGATTTGTTG+GGG 0.516616 3_3:+67251938 Msa0466520:three_prime_UTR
AGAAGAGTTGTTCGTTTGGG+AGG 0.520427 3_3:-67250849 None:intergenic
TATATAGCTAAGAGATCAGT+AGG 0.522243 3_3:-67252050 None:intergenic
CAAATAGAAGCCATCGCCGT+CGG 0.523034 3_3:+67250943 Msa0466520:CDS
GTAATGTGGATCCAGGTAAC+GGG 0.524572 3_3:+67251289 Msa0466520:CDS
CCAATCGCTTTATCTGCTCT+CGG 0.531316 3_3:+67251081 Msa0466520:CDS
AGACGATGCATGGTGGGATA+GGG 0.531744 3_3:-67250337 None:intergenic
GACTTCATTACCGACGGCGA+TGG 0.533265 3_3:-67250953 None:intergenic
CTACTTTGAATGCTGAGGGT+AGG 0.540473 3_3:-67250723 None:intergenic
GGTAATGTGGATCCAGGTAA+CGG 0.542039 3_3:+67251288 Msa0466520:CDS
GAGGTATGAGGAAATGAGGA+TGG 0.545090 3_3:-67250371 None:intergenic
CGTGCAACTTTCACTACACA+TGG 0.548989 3_3:-67251990 None:intergenic
CTTAACTACTTTGAATGCTG+AGG 0.551196 3_3:-67250728 None:intergenic
TGATGTTCCGTTTACTGTGG+CGG 0.551618 3_3:+67251638 Msa0466520:CDS
AACTTTCCTACGCCCTCACA+TGG 0.552284 3_3:+67250884 Msa0466520:CDS
TCTTGGGTGTGTCTAGGTCG+AGG 0.552824 3_3:+67251789 Msa0466520:three_prime_UTR
TCGTGAAAACCCGGGTAATG+TGG 0.558115 3_3:+67251275 Msa0466520:CDS
TTGGAGCCATGTGAGGGCGT+AGG 0.561253 3_3:-67250890 None:intergenic
TTGAATGACCCGGTTGAAGA+CGG 0.562405 3_3:-67251114 None:intergenic
TAAACGGTCAGATTCGCATT+CGG 0.565144 3_3:-67251525 None:intergenic
CCGAGAGCAGATAAAGCGAT+TGG 0.569316 3_3:-67251081 None:intergenic
CCTCTTATCCGTCTTCAACC+GGG 0.572031 3_3:+67251106 Msa0466520:CDS
TCACGGAGGAAGTTTAGCAT+TGG 0.572211 3_3:-67251165 None:intergenic
TTAACTACTTTGAATGCTGA+GGG 0.578124 3_3:-67250727 None:intergenic
TTCCCGGCGCCGAAACGTCA+CGG 0.582794 3_3:-67251674 None:intergenic
TCAATACGACGACGTTAGAG+TGG 0.588831 3_3:+67251374 Msa0466520:CDS
GCGACCATAGTTCACTCCAA+TGG 0.590342 3_3:-67250689 None:intergenic
ATGAGTAGACGATGCATGGT+GGG 0.593641 3_3:-67250343 None:intergenic
GAAGCAATACCTGCAAGTAG+TGG 0.596051 3_3:-67250400 None:intergenic
CGTCGGTAATGAAGTCTTCG+TGG 0.598441 3_3:+67250960 Msa0466520:CDS
GGCGGGGATGAGGTATTTGG+TGG 0.601341 3_3:-67250995 None:intergenic
CACGAAGACTTCATTACCGA+CGG 0.613529 3_3:-67250959 None:intergenic
GAAACGGGTTGGCCTTCGAA+AGG 0.613978 3_3:+67251405 Msa0466520:CDS
CGGTGTCGTAGAGTTTGACC+CGG 0.627592 3_3:-67250774 None:intergenic
ATTCGCATTCGGTCTTAAAG+GGG 0.628701 3_3:-67251514 None:intergenic
TTATGATGTTCCGTTTACTG+TGG 0.629594 3_3:+67251635 Msa0466520:CDS
AGAAGATTCTGAATAACGGT+GGG 0.630333 3_3:+67251490 Msa0466520:CDS
GAGATCGGGTTTGAATGACC+CGG 0.632773 3_3:-67251124 None:intergenic
CAAACTCTACGACACCGACC+CGG 0.633891 3_3:+67250780 Msa0466520:CDS
AAGAAGATTCTGAATAACGG+TGG 0.634613 3_3:+67251489 Msa0466520:CDS
TACCTGGATCCACATTACCC+GGG 0.638164 3_3:-67251284 None:intergenic
TCATCACTATCACCTTTCGA+AGG 0.639827 3_3:-67251417 None:intergenic
GAAAGGTGATAGTGATGAGG+TGG 0.640804 3_3:+67251422 Msa0466520:CDS
AAGAATGAGTAGACGATGCA+TGG 0.642954 3_3:-67250347 None:intergenic
GCCCTATTTCGTGAAAACCC+GGG 0.653207 3_3:+67251267 Msa0466520:CDS
TTCGAAAGGTGATAGTGATG+AGG 0.659057 3_3:+67251419 Msa0466520:CDS
CAGAACGCTGCTGCGTACAA+CGG 0.661248 3_3:+67251456 Msa0466520:CDS
CTGCAAGTAGTGGAAGTGAG+AGG 0.663993 3_3:-67250390 None:intergenic
AAAATCACAAGGAATCGACC+GGG 0.666777 3_3:+67250756 Msa0466520:CDS
AATGAGTAGACGATGCATGG+TGG 0.672661 3_3:-67250344 None:intergenic
ATGTTCCGTTTACTGTGGCG+GGG 0.675695 3_3:+67251640 Msa0466520:CDS
GTTAAGCTTCTAAAATCACA+AGG 0.686975 3_3:+67250745 Msa0466520:CDS
TGGTTGTGAGTGAAACGGGT+TGG 0.699770 3_3:+67251394 Msa0466520:CDS
ATATTTGTTAGATTTGTTGG+GGG 0.714508 3_3:+67251939 Msa0466520:three_prime_UTR
GTACGCAGCAGCGTTCTGTG+GGG 0.722190 3_3:-67251451 None:intergenic
AAAGGTGATAGTGATGAGGT+GGG 0.725483 3_3:+67251423 Msa0466520:CDS
GCAACTTTCACTACACATGG+AGG 0.733978 3_3:-67251987 None:intergenic
AATACGACGACGTTTCACGG+AGG 0.735832 3_3:-67251179 None:intergenic
AAGTGGGACCTACTTCAGAG+AGG 0.745668 3_3:+67251577 Msa0466520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATGTAAACAAAAAAGA+TGG - chr3_3:67250441-67250460 None:intergenic 15.0%
!!! TATTGGGATTAAATTTTATT+GGG + chr3_3:67251873-67251892 Msa0466520:three_prime_UTR 15.0%
!!! TAATATTTGTTAGATTTGTT+GGG + chr3_3:67251937-67251956 Msa0466520:three_prime_UTR 15.0%
!! AATAATGTAAACAAAAAAGA+TGG - chr3_3:67250441-67250460 None:intergenic 15.0%
!!! TATTGGGATTAAATTTTATT+GGG + chr3_3:67251873-67251892 Msa0466520:three_prime_UTR 15.0%
!!! TAATATTTGTTAGATTTGTT+GGG + chr3_3:67251937-67251956 Msa0466520:three_prime_UTR 15.0%
!!! TTATTAATTGTTGTTACAGA+TGG + chr3_3:67250661-67250680 Msa0466520:intron 20.0%
!!! AAAAAGCGCAAATAAATAAA+CGG - chr3_3:67251544-67251563 None:intergenic 20.0%
!! ATATCTGCAAAATGAAATTT+AGG - chr3_3:67251852-67251871 None:intergenic 20.0%
!!! GTATTGGGATTAAATTTTAT+TGG + chr3_3:67251872-67251891 Msa0466520:three_prime_UTR 20.0%
!! AAACATGTTAGTATGTTAAT+TGG + chr3_3:67251913-67251932 Msa0466520:three_prime_UTR 20.0%
!!! CTAATATTTGTTAGATTTGT+TGG + chr3_3:67251936-67251955 Msa0466520:three_prime_UTR 20.0%
!!! AATATTTGTTAGATTTGTTG+GGG + chr3_3:67251938-67251957 Msa0466520:three_prime_UTR 20.0%
!! TTGTATCACATTAATTCATA+TGG - chr3_3:67252076-67252095 None:intergenic 20.0%
!!! TTATTAATTGTTGTTACAGA+TGG + chr3_3:67250661-67250680 Msa0466520:intron 20.0%
!!! AAAAAGCGCAAATAAATAAA+CGG - chr3_3:67251544-67251563 None:intergenic 20.0%
!! ATATCTGCAAAATGAAATTT+AGG - chr3_3:67251852-67251871 None:intergenic 20.0%
!!! GTATTGGGATTAAATTTTAT+TGG + chr3_3:67251872-67251891 Msa0466520:three_prime_UTR 20.0%
!! AAACATGTTAGTATGTTAAT+TGG + chr3_3:67251913-67251932 Msa0466520:three_prime_UTR 20.0%
!!! CTAATATTTGTTAGATTTGT+TGG + chr3_3:67251936-67251955 Msa0466520:three_prime_UTR 20.0%
!!! AATATTTGTTAGATTTGTTG+GGG + chr3_3:67251938-67251957 Msa0466520:three_prime_UTR 20.0%
!! TTGTATCACATTAATTCATA+TGG - chr3_3:67252076-67252095 None:intergenic 20.0%
! TAATATAAACATGTGTGTGT+AGG + chr3_3:67250494-67250513 Msa0466520:intron 25.0%
!!! TTTAGCATTGGTTTAATTAC+GGG - chr3_3:67251156-67251175 None:intergenic 25.0%
!!! GTTTAGCATTGGTTTAATTA+CGG - chr3_3:67251157-67251176 None:intergenic 25.0%
! GTTAAGAAGATTCTGAATAA+CGG + chr3_3:67251486-67251505 Msa0466520:CDS 25.0%
!!! TTTGCGCTTTTTAATGAAAA+TGG + chr3_3:67251552-67251571 Msa0466520:CDS 25.0%
!!! TTGCGCTTTTTAATGAAAAT+GGG + chr3_3:67251553-67251572 Msa0466520:CDS 25.0%
!! TTTTAATGAAAATGGGAAAG+TGG + chr3_3:67251560-67251579 Msa0466520:CDS 25.0%
! TTTAATGAAAATGGGAAAGT+GGG + chr3_3:67251561-67251580 Msa0466520:CDS 25.0%
! TCATAAACTTTCTTCATATC+AGG - chr3_3:67251621-67251640 None:intergenic 25.0%
! TTATGATCAGTTCATTATCT+TGG + chr3_3:67251772-67251791 Msa0466520:three_prime_UTR 25.0%
! TATGATCAGTTCATTATCTT+GGG + chr3_3:67251773-67251792 Msa0466520:three_prime_UTR 25.0%
!! TTCATTTTGCAGATATGTAT+TGG + chr3_3:67251856-67251875 Msa0466520:three_prime_UTR 25.0%
!! TCATTTTGCAGATATGTATT+GGG + chr3_3:67251857-67251876 Msa0466520:three_prime_UTR 25.0%
!!! ATATTTGTTAGATTTGTTGG+GGG + chr3_3:67251939-67251958 Msa0466520:three_prime_UTR 25.0%
! TAATATAAACATGTGTGTGT+AGG + chr3_3:67250494-67250513 Msa0466520:intron 25.0%
!!! TTTAGCATTGGTTTAATTAC+GGG - chr3_3:67251156-67251175 None:intergenic 25.0%
!!! GTTTAGCATTGGTTTAATTA+CGG - chr3_3:67251157-67251176 None:intergenic 25.0%
! GTTAAGAAGATTCTGAATAA+CGG + chr3_3:67251486-67251505 Msa0466520:CDS 25.0%
!!! TTTGCGCTTTTTAATGAAAA+TGG + chr3_3:67251552-67251571 Msa0466520:CDS 25.0%
!!! TTGCGCTTTTTAATGAAAAT+GGG + chr3_3:67251553-67251572 Msa0466520:CDS 25.0%
!! TTTTAATGAAAATGGGAAAG+TGG + chr3_3:67251560-67251579 Msa0466520:CDS 25.0%
! TTTAATGAAAATGGGAAAGT+GGG + chr3_3:67251561-67251580 Msa0466520:CDS 25.0%
! TCATAAACTTTCTTCATATC+AGG - chr3_3:67251621-67251640 None:intergenic 25.0%
! TTATGATCAGTTCATTATCT+TGG + chr3_3:67251772-67251791 Msa0466520:three_prime_UTR 25.0%
! TATGATCAGTTCATTATCTT+GGG + chr3_3:67251773-67251792 Msa0466520:three_prime_UTR 25.0%
!! TTCATTTTGCAGATATGTAT+TGG + chr3_3:67251856-67251875 Msa0466520:three_prime_UTR 25.0%
!! TCATTTTGCAGATATGTATT+GGG + chr3_3:67251857-67251876 Msa0466520:three_prime_UTR 25.0%
!!! ATATTTGTTAGATTTGTTGG+GGG + chr3_3:67251939-67251958 Msa0466520:three_prime_UTR 25.0%
TGTATGTGAAAGTGACTTAT+CGG - chr3_3:67250530-67250549 None:intergenic 30.0%
TTAACTACTTTGAATGCTGA+GGG - chr3_3:67250730-67250749 None:intergenic 30.0%
!! GTTAAGCTTCTAAAATCACA+AGG + chr3_3:67250745-67250764 Msa0466520:CDS 30.0%
TATAGAAGAGTTGTTCGTTT+GGG - chr3_3:67250855-67250874 None:intergenic 30.0%
! TTTGTGAATGTTTTTCATGG+CGG - chr3_3:67251016-67251035 None:intergenic 30.0%
!! AGCTTTGTGAATGTTTTTCA+TGG - chr3_3:67251019-67251038 None:intergenic 30.0%
!! AAGAGATTTTGATGGAATTG+TGG - chr3_3:67251059-67251078 None:intergenic 30.0%
TCGAGGTTGAGAATATAATT+TGG + chr3_3:67251806-67251825 Msa0466520:three_prime_UTR 30.0%
CGAGGTTGAGAATATAATTT+GGG + chr3_3:67251807-67251826 Msa0466520:three_prime_UTR 30.0%
TATATAGCTAAGAGATCAGT+AGG - chr3_3:67252053-67252072 None:intergenic 30.0%
TGTATGTGAAAGTGACTTAT+CGG - chr3_3:67250530-67250549 None:intergenic 30.0%
TTAACTACTTTGAATGCTGA+GGG - chr3_3:67250730-67250749 None:intergenic 30.0%
!! GTTAAGCTTCTAAAATCACA+AGG + chr3_3:67250745-67250764 Msa0466520:CDS 30.0%
TATAGAAGAGTTGTTCGTTT+GGG - chr3_3:67250855-67250874 None:intergenic 30.0%
! TTTGTGAATGTTTTTCATGG+CGG - chr3_3:67251016-67251035 None:intergenic 30.0%
!! AGCTTTGTGAATGTTTTTCA+TGG - chr3_3:67251019-67251038 None:intergenic 30.0%
!! AAGAGATTTTGATGGAATTG+TGG - chr3_3:67251059-67251078 None:intergenic 30.0%
TCGAGGTTGAGAATATAATT+TGG + chr3_3:67251806-67251825 Msa0466520:three_prime_UTR 30.0%
CGAGGTTGAGAATATAATTT+GGG + chr3_3:67251807-67251826 Msa0466520:three_prime_UTR 30.0%
TATATAGCTAAGAGATCAGT+AGG - chr3_3:67252053-67252072 None:intergenic 30.0%
CAAAAAAGATGGTGAAGAAG+TGG - chr3_3:67250430-67250449 None:intergenic 35.0%
GTTACAGATGGTAATTCCAT+TGG + chr3_3:67250673-67250692 Msa0466520:intron 35.0%
AATTCCATTGGAGTGAACTA+TGG + chr3_3:67250685-67250704 Msa0466520:CDS 35.0%
CTTAACTACTTTGAATGCTG+AGG - chr3_3:67250731-67250750 None:intergenic 35.0%
TAAAATCACAAGGAATCGAC+CGG + chr3_3:67250755-67250774 Msa0466520:CDS 35.0%
!! TCCGGATAAGGATTTTAGAA+CGG - chr3_3:67250806-67250825 None:intergenic 35.0%
! GTTTACGGTTACTTTGATTC+CGG - chr3_3:67250830-67250849 None:intergenic 35.0%
GTATAGAAGAGTTGTTCGTT+TGG - chr3_3:67250856-67250875 None:intergenic 35.0%
!! ATGGCTTCTATTTGGGTTTT+GGG - chr3_3:67250937-67250956 None:intergenic 35.0%
! TTGTGAATGTTTTTCATGGC+GGG - chr3_3:67251015-67251034 None:intergenic 35.0%
!! AGATTTTGATGGAATTGTGG+AGG - chr3_3:67251056-67251075 None:intergenic 35.0%
! GATTGGTGAAGAGATTTTGA+TGG - chr3_3:67251067-67251086 None:intergenic 35.0%
AATTACGGGTTCTATGAGAT+CGG - chr3_3:67251142-67251161 None:intergenic 35.0%
TTAAATACGACGACGTTTCA+CGG - chr3_3:67251185-67251204 None:intergenic 35.0%
TGAAACGTCGTCGTATTTAA+TGG + chr3_3:67251185-67251204 Msa0466520:CDS 35.0%
! TTTGACTCGTAAGCGAAAAA+GGG - chr3_3:67251222-67251241 None:intergenic 35.0%
!!! TAGTATTTTAACCCGTTACC+TGG - chr3_3:67251303-67251322 None:intergenic 35.0%
AAGAAGATTCTGAATAACGG+TGG + chr3_3:67251489-67251508 Msa0466520:CDS 35.0%
AGAAGATTCTGAATAACGGT+GGG + chr3_3:67251490-67251509 Msa0466520:CDS 35.0%
! CTACTTCAGAGAGGAATTTT+GGG + chr3_3:67251586-67251605 Msa0466520:CDS 35.0%
TTATGATGTTCCGTTTACTG+TGG + chr3_3:67251635-67251654 Msa0466520:CDS 35.0%
CAAAAAAGATGGTGAAGAAG+TGG - chr3_3:67250430-67250449 None:intergenic 35.0%
GTTACAGATGGTAATTCCAT+TGG + chr3_3:67250673-67250692 Msa0466520:intron 35.0%
AATTCCATTGGAGTGAACTA+TGG + chr3_3:67250685-67250704 Msa0466520:CDS 35.0%
CTTAACTACTTTGAATGCTG+AGG - chr3_3:67250731-67250750 None:intergenic 35.0%
TAAAATCACAAGGAATCGAC+CGG + chr3_3:67250755-67250774 Msa0466520:CDS 35.0%
!! TCCGGATAAGGATTTTAGAA+CGG - chr3_3:67250806-67250825 None:intergenic 35.0%
! GTTTACGGTTACTTTGATTC+CGG - chr3_3:67250830-67250849 None:intergenic 35.0%
GTATAGAAGAGTTGTTCGTT+TGG - chr3_3:67250856-67250875 None:intergenic 35.0%
!! ATGGCTTCTATTTGGGTTTT+GGG - chr3_3:67250937-67250956 None:intergenic 35.0%
! TTGTGAATGTTTTTCATGGC+GGG - chr3_3:67251015-67251034 None:intergenic 35.0%
!! AGATTTTGATGGAATTGTGG+AGG - chr3_3:67251056-67251075 None:intergenic 35.0%
! GATTGGTGAAGAGATTTTGA+TGG - chr3_3:67251067-67251086 None:intergenic 35.0%
AATTACGGGTTCTATGAGAT+CGG - chr3_3:67251142-67251161 None:intergenic 35.0%
TTAAATACGACGACGTTTCA+CGG - chr3_3:67251185-67251204 None:intergenic 35.0%
TGAAACGTCGTCGTATTTAA+TGG + chr3_3:67251185-67251204 Msa0466520:CDS 35.0%
! TTTGACTCGTAAGCGAAAAA+GGG - chr3_3:67251222-67251241 None:intergenic 35.0%
!!! TAGTATTTTAACCCGTTACC+TGG - chr3_3:67251303-67251322 None:intergenic 35.0%
AAGAAGATTCTGAATAACGG+TGG + chr3_3:67251489-67251508 Msa0466520:CDS 35.0%
AGAAGATTCTGAATAACGGT+GGG + chr3_3:67251490-67251509 Msa0466520:CDS 35.0%
! CTACTTCAGAGAGGAATTTT+GGG + chr3_3:67251586-67251605 Msa0466520:CDS 35.0%
TTATGATGTTCCGTTTACTG+TGG + chr3_3:67251635-67251654 Msa0466520:CDS 35.0%
AAGAATGAGTAGACGATGCA+TGG - chr3_3:67250350-67250369 None:intergenic 40.0%
AAGATGGTGAAGAAGTGGAA+TGG - chr3_3:67250425-67250444 None:intergenic 40.0%
AAAATCACAAGGAATCGACC+GGG + chr3_3:67250756-67250775 Msa0466520:CDS 40.0%
!!! ATAAGGATTTTAGAACGGCC+GGG - chr3_3:67250801-67250820 None:intergenic 40.0%
!!! GATAAGGATTTTAGAACGGC+CGG - chr3_3:67250802-67250821 None:intergenic 40.0%
!! GCCGTTCTAAAATCCTTATC+CGG + chr3_3:67250802-67250821 Msa0466520:CDS 40.0%
CTAAAATCCTTATCCGGATC+CGG + chr3_3:67250808-67250827 Msa0466520:CDS 40.0%
TTGTTCGTTTGGGAGGTTTA+CGG - chr3_3:67250845-67250864 None:intergenic 40.0%
!!! GTTTTTTTGGAGCCATGTGA+GGG - chr3_3:67250899-67250918 None:intergenic 40.0%
!!! GGTAAACGACGACGTTTTTT+TGG - chr3_3:67250912-67250931 None:intergenic 40.0%
!! TGGCTTCTATTTGGGTTTTG+GGG - chr3_3:67250936-67250955 None:intergenic 40.0%
!! GATGGCTTCTATTTGGGTTT+TGG - chr3_3:67250938-67250957 None:intergenic 40.0%
! TGTGAATGTTTTTCATGGCG+GGG - chr3_3:67251014-67251033 None:intergenic 40.0%
ATTACGGGTTCTATGAGATC+GGG - chr3_3:67251141-67251160 None:intergenic 40.0%
! TTGACTCGTAAGCGAAAAAG+GGG - chr3_3:67251221-67251240 None:intergenic 40.0%
! GTTTGACTCGTAAGCGAAAA+AGG - chr3_3:67251223-67251242 None:intergenic 40.0%
TAGAGTGGTTGTGAGTGAAA+CGG + chr3_3:67251389-67251408 Msa0466520:CDS 40.0%
TCATCACTATCACCTTTCGA+AGG - chr3_3:67251420-67251439 None:intergenic 40.0%
! TTCGAAAGGTGATAGTGATG+AGG + chr3_3:67251419-67251438 Msa0466520:CDS 40.0%
! AAAGGTGATAGTGATGAGGT+GGG + chr3_3:67251423-67251442 Msa0466520:CDS 40.0%
ATTCGCATTCGGTCTTAAAG+GGG - chr3_3:67251517-67251536 None:intergenic 40.0%
GATTCGCATTCGGTCTTAAA+GGG - chr3_3:67251518-67251537 None:intergenic 40.0%
AGATTCGCATTCGGTCTTAA+AGG - chr3_3:67251519-67251538 None:intergenic 40.0%
TAAACGGTCAGATTCGCATT+CGG - chr3_3:67251528-67251547 None:intergenic 40.0%
!! CCAAAATTCCTCTCTGAAGT+AGG - chr3_3:67251588-67251607 None:intergenic 40.0%
! CCTACTTCAGAGAGGAATTT+TGG + chr3_3:67251585-67251604 Msa0466520:CDS 40.0%
TCATTATCTTGGGTGTGTCT+AGG + chr3_3:67251783-67251802 Msa0466520:three_prime_UTR 40.0%
AAGAATGAGTAGACGATGCA+TGG - chr3_3:67250350-67250369 None:intergenic 40.0%
AAGATGGTGAAGAAGTGGAA+TGG - chr3_3:67250425-67250444 None:intergenic 40.0%
AAAATCACAAGGAATCGACC+GGG + chr3_3:67250756-67250775 Msa0466520:CDS 40.0%
!!! ATAAGGATTTTAGAACGGCC+GGG - chr3_3:67250801-67250820 None:intergenic 40.0%
!!! GATAAGGATTTTAGAACGGC+CGG - chr3_3:67250802-67250821 None:intergenic 40.0%
!! GCCGTTCTAAAATCCTTATC+CGG + chr3_3:67250802-67250821 Msa0466520:CDS 40.0%
CTAAAATCCTTATCCGGATC+CGG + chr3_3:67250808-67250827 Msa0466520:CDS 40.0%
TTGTTCGTTTGGGAGGTTTA+CGG - chr3_3:67250845-67250864 None:intergenic 40.0%
!!! GTTTTTTTGGAGCCATGTGA+GGG - chr3_3:67250899-67250918 None:intergenic 40.0%
!!! GGTAAACGACGACGTTTTTT+TGG - chr3_3:67250912-67250931 None:intergenic 40.0%
!! TGGCTTCTATTTGGGTTTTG+GGG - chr3_3:67250936-67250955 None:intergenic 40.0%
!! GATGGCTTCTATTTGGGTTT+TGG - chr3_3:67250938-67250957 None:intergenic 40.0%
! TGTGAATGTTTTTCATGGCG+GGG - chr3_3:67251014-67251033 None:intergenic 40.0%
ATTACGGGTTCTATGAGATC+GGG - chr3_3:67251141-67251160 None:intergenic 40.0%
! TTGACTCGTAAGCGAAAAAG+GGG - chr3_3:67251221-67251240 None:intergenic 40.0%
! GTTTGACTCGTAAGCGAAAA+AGG - chr3_3:67251223-67251242 None:intergenic 40.0%
TAGAGTGGTTGTGAGTGAAA+CGG + chr3_3:67251389-67251408 Msa0466520:CDS 40.0%
TCATCACTATCACCTTTCGA+AGG - chr3_3:67251420-67251439 None:intergenic 40.0%
! TTCGAAAGGTGATAGTGATG+AGG + chr3_3:67251419-67251438 Msa0466520:CDS 40.0%
! AAAGGTGATAGTGATGAGGT+GGG + chr3_3:67251423-67251442 Msa0466520:CDS 40.0%
ATTCGCATTCGGTCTTAAAG+GGG - chr3_3:67251517-67251536 None:intergenic 40.0%
GATTCGCATTCGGTCTTAAA+GGG - chr3_3:67251518-67251537 None:intergenic 40.0%
AGATTCGCATTCGGTCTTAA+AGG - chr3_3:67251519-67251538 None:intergenic 40.0%
TAAACGGTCAGATTCGCATT+CGG - chr3_3:67251528-67251547 None:intergenic 40.0%
!! CCAAAATTCCTCTCTGAAGT+AGG - chr3_3:67251588-67251607 None:intergenic 40.0%
! CCTACTTCAGAGAGGAATTT+TGG + chr3_3:67251585-67251604 Msa0466520:CDS 40.0%
TCATTATCTTGGGTGTGTCT+AGG + chr3_3:67251783-67251802 Msa0466520:three_prime_UTR 40.0%
ATGAGTAGACGATGCATGGT+GGG - chr3_3:67250346-67250365 None:intergenic 45.0%
AATGAGTAGACGATGCATGG+TGG - chr3_3:67250347-67250366 None:intergenic 45.0%
GAGGTATGAGGAAATGAGGA+TGG - chr3_3:67250374-67250393 None:intergenic 45.0%
! GTGAGAGGTATGAGGAAATG+AGG - chr3_3:67250378-67250397 None:intergenic 45.0%
! TAGTGGAAGTGAGAGGTATG+AGG - chr3_3:67250386-67250405 None:intergenic 45.0%
GAAGCAATACCTGCAAGTAG+TGG - chr3_3:67250403-67250422 None:intergenic 45.0%
CTACTTTGAATGCTGAGGGT+AGG - chr3_3:67250726-67250745 None:intergenic 45.0%
TTTGATTCCGGATCCGGATA+AGG - chr3_3:67250818-67250837 None:intergenic 45.0%
! GGTTACTTTGATTCCGGATC+CGG - chr3_3:67250824-67250843 None:intergenic 45.0%
AGAAGAGTTGTTCGTTTGGG+AGG - chr3_3:67250852-67250871 None:intergenic 45.0%
!!! GAGGGCGTAGGAAAGTTTTT+TGG - chr3_3:67250881-67250900 None:intergenic 45.0%
!!! CGTTTTTTTGGAGCCATGTG+AGG - chr3_3:67250900-67250919 None:intergenic 45.0%
!!! CTTCTATTTGGGTTTTGGGG+TGG - chr3_3:67250933-67250952 None:intergenic 45.0%
CACGAAGACTTCATTACCGA+CGG - chr3_3:67250962-67250981 None:intergenic 45.0%
CCAATCGCTTTATCTGCTCT+CGG + chr3_3:67251081-67251100 Msa0466520:CDS 45.0%
TCCTCTTATCCGTCTTCAAC+CGG + chr3_3:67251105-67251124 Msa0466520:CDS 45.0%
TTGAATGACCCGGTTGAAGA+CGG - chr3_3:67251117-67251136 None:intergenic 45.0%
TCACGGAGGAAGTTTAGCAT+TGG - chr3_3:67251168-67251187 None:intergenic 45.0%
! ACCCGGGTTTTCACGAAATA+GGG - chr3_3:67251271-67251290 None:intergenic 45.0%
! TACCCGGGTTTTCACGAAAT+AGG - chr3_3:67251272-67251291 None:intergenic 45.0%
TTACCTGGATCCACATTACC+CGG - chr3_3:67251288-67251307 None:intergenic 45.0%
GGTAATGTGGATCCAGGTAA+CGG + chr3_3:67251288-67251307 Msa0466520:CDS 45.0%
GTAATGTGGATCCAGGTAAC+GGG + chr3_3:67251289-67251308 Msa0466520:CDS 45.0%
TCAATACGACGACGTTAGAG+TGG + chr3_3:67251374-67251393 Msa0466520:CDS 45.0%
AGAGTGGTTGTGAGTGAAAC+GGG + chr3_3:67251390-67251409 Msa0466520:CDS 45.0%
! GAAAGGTGATAGTGATGAGG+TGG + chr3_3:67251422-67251441 Msa0466520:CDS 45.0%
TGATGTTCCGTTTACTGTGG+CGG + chr3_3:67251638-67251657 Msa0466520:CDS 45.0%
GAAGAGTTACCGTGACGTTT+CGG + chr3_3:67251665-67251684 Msa0466520:CDS 45.0%
!! AGATTTGTTGGGGGAAGCAA+AGG + chr3_3:67251948-67251967 Msa0466520:three_prime_UTR 45.0%
GCAACTTTCACTACACATGG+AGG - chr3_3:67251990-67252009 None:intergenic 45.0%
CGTGCAACTTTCACTACACA+TGG - chr3_3:67251993-67252012 None:intergenic 45.0%
ATGAGTAGACGATGCATGGT+GGG - chr3_3:67250346-67250365 None:intergenic 45.0%
AATGAGTAGACGATGCATGG+TGG - chr3_3:67250347-67250366 None:intergenic 45.0%
GAGGTATGAGGAAATGAGGA+TGG - chr3_3:67250374-67250393 None:intergenic 45.0%
! GTGAGAGGTATGAGGAAATG+AGG - chr3_3:67250378-67250397 None:intergenic 45.0%
! TAGTGGAAGTGAGAGGTATG+AGG - chr3_3:67250386-67250405 None:intergenic 45.0%
GAAGCAATACCTGCAAGTAG+TGG - chr3_3:67250403-67250422 None:intergenic 45.0%
CTACTTTGAATGCTGAGGGT+AGG - chr3_3:67250726-67250745 None:intergenic 45.0%
TTTGATTCCGGATCCGGATA+AGG - chr3_3:67250818-67250837 None:intergenic 45.0%
! GGTTACTTTGATTCCGGATC+CGG - chr3_3:67250824-67250843 None:intergenic 45.0%
AGAAGAGTTGTTCGTTTGGG+AGG - chr3_3:67250852-67250871 None:intergenic 45.0%
!!! GAGGGCGTAGGAAAGTTTTT+TGG - chr3_3:67250881-67250900 None:intergenic 45.0%
!!! CGTTTTTTTGGAGCCATGTG+AGG - chr3_3:67250900-67250919 None:intergenic 45.0%
!!! CTTCTATTTGGGTTTTGGGG+TGG - chr3_3:67250933-67250952 None:intergenic 45.0%
CACGAAGACTTCATTACCGA+CGG - chr3_3:67250962-67250981 None:intergenic 45.0%
CCAATCGCTTTATCTGCTCT+CGG + chr3_3:67251081-67251100 Msa0466520:CDS 45.0%
TCCTCTTATCCGTCTTCAAC+CGG + chr3_3:67251105-67251124 Msa0466520:CDS 45.0%
TTGAATGACCCGGTTGAAGA+CGG - chr3_3:67251117-67251136 None:intergenic 45.0%
TCACGGAGGAAGTTTAGCAT+TGG - chr3_3:67251168-67251187 None:intergenic 45.0%
! ACCCGGGTTTTCACGAAATA+GGG - chr3_3:67251271-67251290 None:intergenic 45.0%
! TACCCGGGTTTTCACGAAAT+AGG - chr3_3:67251272-67251291 None:intergenic 45.0%
TTACCTGGATCCACATTACC+CGG - chr3_3:67251288-67251307 None:intergenic 45.0%
GGTAATGTGGATCCAGGTAA+CGG + chr3_3:67251288-67251307 Msa0466520:CDS 45.0%
GTAATGTGGATCCAGGTAAC+GGG + chr3_3:67251289-67251308 Msa0466520:CDS 45.0%
TCAATACGACGACGTTAGAG+TGG + chr3_3:67251374-67251393 Msa0466520:CDS 45.0%
AGAGTGGTTGTGAGTGAAAC+GGG + chr3_3:67251390-67251409 Msa0466520:CDS 45.0%
! GAAAGGTGATAGTGATGAGG+TGG + chr3_3:67251422-67251441 Msa0466520:CDS 45.0%
TGATGTTCCGTTTACTGTGG+CGG + chr3_3:67251638-67251657 Msa0466520:CDS 45.0%
GAAGAGTTACCGTGACGTTT+CGG + chr3_3:67251665-67251684 Msa0466520:CDS 45.0%
!! AGATTTGTTGGGGGAAGCAA+AGG + chr3_3:67251948-67251967 Msa0466520:three_prime_UTR 45.0%
GCAACTTTCACTACACATGG+AGG - chr3_3:67251990-67252009 None:intergenic 45.0%
CGTGCAACTTTCACTACACA+TGG - chr3_3:67251993-67252012 None:intergenic 45.0%
! AGACGATGCATGGTGGGATA+GGG - chr3_3:67250340-67250359 None:intergenic 50.0%
! TAGACGATGCATGGTGGGAT+AGG - chr3_3:67250341-67250360 None:intergenic 50.0%
! CTGCAAGTAGTGGAAGTGAG+AGG - chr3_3:67250393-67250412 None:intergenic 50.0%
CTCTCACTTCCACTACTTGC+AGG + chr3_3:67250391-67250410 Msa0466520:CDS 50.0%
GCGACCATAGTTCACTCCAA+TGG - chr3_3:67250692-67250711 None:intergenic 50.0%
AACTTTCCTACGCCCTCACA+TGG + chr3_3:67250884-67250903 Msa0466520:CDS 50.0%
GACGGCGATGGCTTCTATTT+GGG - chr3_3:67250944-67250963 None:intergenic 50.0%
CAAATAGAAGCCATCGCCGT+CGG + chr3_3:67250943-67250962 Msa0466520:CDS 50.0%
CGTCGGTAATGAAGTCTTCG+TGG + chr3_3:67250960-67250979 Msa0466520:CDS 50.0%
!! TGTTTTTCATGGCGGGGATG+AGG - chr3_3:67251008-67251027 None:intergenic 50.0%
CCGAGAGCAGATAAAGCGAT+TGG - chr3_3:67251084-67251103 None:intergenic 50.0%
CCTCTTATCCGTCTTCAACC+GGG + chr3_3:67251106-67251125 Msa0466520:CDS 50.0%
GAGATCGGGTTTGAATGACC+CGG - chr3_3:67251127-67251146 None:intergenic 50.0%
AATACGACGACGTTTCACGG+AGG - chr3_3:67251182-67251201 None:intergenic 50.0%
CGCCCTATTTCGTGAAAACC+CGG + chr3_3:67251266-67251285 Msa0466520:CDS 50.0%
GCCCTATTTCGTGAAAACCC+GGG + chr3_3:67251267-67251286 Msa0466520:CDS 50.0%
TCGTGAAAACCCGGGTAATG+TGG + chr3_3:67251275-67251294 Msa0466520:CDS 50.0%
TACCTGGATCCACATTACCC+GGG - chr3_3:67251287-67251306 None:intergenic 50.0%
TGGTTGTGAGTGAAACGGGT+TGG + chr3_3:67251394-67251413 Msa0466520:CDS 50.0%
AAGTGGGACCTACTTCAGAG+AGG + chr3_3:67251577-67251596 Msa0466520:CDS 50.0%
GATGTTCCGTTTACTGTGGC+GGG + chr3_3:67251639-67251658 Msa0466520:CDS 50.0%
ATGTTCCGTTTACTGTGGCG+GGG + chr3_3:67251640-67251659 Msa0466520:CDS 50.0%
TTCAACCCCGCCACAGTAAA+CGG - chr3_3:67251648-67251667 None:intergenic 50.0%
! AGACGATGCATGGTGGGATA+GGG - chr3_3:67250340-67250359 None:intergenic 50.0%
! TAGACGATGCATGGTGGGAT+AGG - chr3_3:67250341-67250360 None:intergenic 50.0%
! CTGCAAGTAGTGGAAGTGAG+AGG - chr3_3:67250393-67250412 None:intergenic 50.0%
CTCTCACTTCCACTACTTGC+AGG + chr3_3:67250391-67250410 Msa0466520:CDS 50.0%
GCGACCATAGTTCACTCCAA+TGG - chr3_3:67250692-67250711 None:intergenic 50.0%
AACTTTCCTACGCCCTCACA+TGG + chr3_3:67250884-67250903 Msa0466520:CDS 50.0%
GACGGCGATGGCTTCTATTT+GGG - chr3_3:67250944-67250963 None:intergenic 50.0%
CAAATAGAAGCCATCGCCGT+CGG + chr3_3:67250943-67250962 Msa0466520:CDS 50.0%
CGTCGGTAATGAAGTCTTCG+TGG + chr3_3:67250960-67250979 Msa0466520:CDS 50.0%
!! TGTTTTTCATGGCGGGGATG+AGG - chr3_3:67251008-67251027 None:intergenic 50.0%
CCGAGAGCAGATAAAGCGAT+TGG - chr3_3:67251084-67251103 None:intergenic 50.0%
CCTCTTATCCGTCTTCAACC+GGG + chr3_3:67251106-67251125 Msa0466520:CDS 50.0%
GAGATCGGGTTTGAATGACC+CGG - chr3_3:67251127-67251146 None:intergenic 50.0%
AATACGACGACGTTTCACGG+AGG - chr3_3:67251182-67251201 None:intergenic 50.0%
CGCCCTATTTCGTGAAAACC+CGG + chr3_3:67251266-67251285 Msa0466520:CDS 50.0%
GCCCTATTTCGTGAAAACCC+GGG + chr3_3:67251267-67251286 Msa0466520:CDS 50.0%
TCGTGAAAACCCGGGTAATG+TGG + chr3_3:67251275-67251294 Msa0466520:CDS 50.0%
TACCTGGATCCACATTACCC+GGG - chr3_3:67251287-67251306 None:intergenic 50.0%
TGGTTGTGAGTGAAACGGGT+TGG + chr3_3:67251394-67251413 Msa0466520:CDS 50.0%
AAGTGGGACCTACTTCAGAG+AGG + chr3_3:67251577-67251596 Msa0466520:CDS 50.0%
GATGTTCCGTTTACTGTGGC+GGG + chr3_3:67251639-67251658 Msa0466520:CDS 50.0%
ATGTTCCGTTTACTGTGGCG+GGG + chr3_3:67251640-67251659 Msa0466520:CDS 50.0%
TTCAACCCCGCCACAGTAAA+CGG - chr3_3:67251648-67251667 None:intergenic 50.0%
!! CGGTGTCGTAGAGTTTGACC+CGG - chr3_3:67250777-67250796 None:intergenic 55.0%
CAAACTCTACGACACCGACC+CGG + chr3_3:67250780-67250799 Msa0466520:CDS 55.0%
!!! GGATTTTAGAACGGCCGGGT+CGG - chr3_3:67250797-67250816 None:intergenic 55.0%
CGACGGCGATGGCTTCTATT+TGG - chr3_3:67250945-67250964 None:intergenic 55.0%
GACTTCATTACCGACGGCGA+TGG - chr3_3:67250956-67250975 None:intergenic 55.0%
! CATGGCGGGGATGAGGTATT+TGG - chr3_3:67251001-67251020 None:intergenic 55.0%
CCCGGTTGAAGACGGATAAG+AGG - chr3_3:67251109-67251128 None:intergenic 55.0%
AACCCGGGTAATGTGGATCC+AGG + chr3_3:67251282-67251301 Msa0466520:CDS 55.0%
!! GAAACGGGTTGGCCTTCGAA+AGG + chr3_3:67251405-67251424 Msa0466520:CDS 55.0%
TGTACGCAGCAGCGTTCTGT+GGG - chr3_3:67251455-67251474 None:intergenic 55.0%
TTGTACGCAGCAGCGTTCTG+TGG - chr3_3:67251456-67251475 None:intergenic 55.0%
CAGAACGCTGCTGCGTACAA+CGG + chr3_3:67251456-67251475 Msa0466520:CDS 55.0%
TCTTGGGTGTGTCTAGGTCG+AGG + chr3_3:67251789-67251808 Msa0466520:three_prime_UTR 55.0%
!! CGGTGTCGTAGAGTTTGACC+CGG - chr3_3:67250777-67250796 None:intergenic 55.0%
CAAACTCTACGACACCGACC+CGG + chr3_3:67250780-67250799 Msa0466520:CDS 55.0%
!!! GGATTTTAGAACGGCCGGGT+CGG - chr3_3:67250797-67250816 None:intergenic 55.0%
CGACGGCGATGGCTTCTATT+TGG - chr3_3:67250945-67250964 None:intergenic 55.0%
GACTTCATTACCGACGGCGA+TGG - chr3_3:67250956-67250975 None:intergenic 55.0%
! CATGGCGGGGATGAGGTATT+TGG - chr3_3:67251001-67251020 None:intergenic 55.0%
CCCGGTTGAAGACGGATAAG+AGG - chr3_3:67251109-67251128 None:intergenic 55.0%
AACCCGGGTAATGTGGATCC+AGG + chr3_3:67251282-67251301 Msa0466520:CDS 55.0%
!! GAAACGGGTTGGCCTTCGAA+AGG + chr3_3:67251405-67251424 Msa0466520:CDS 55.0%
TGTACGCAGCAGCGTTCTGT+GGG - chr3_3:67251455-67251474 None:intergenic 55.0%
TTGTACGCAGCAGCGTTCTG+TGG - chr3_3:67251456-67251475 None:intergenic 55.0%
CAGAACGCTGCTGCGTACAA+CGG + chr3_3:67251456-67251475 Msa0466520:CDS 55.0%
TCTTGGGTGTGTCTAGGTCG+AGG + chr3_3:67251789-67251808 Msa0466520:three_prime_UTR 55.0%
! TTGGAGCCATGTGAGGGCGT+AGG - chr3_3:67250893-67250912 None:intergenic 60.0%
! GGCGGGGATGAGGTATTTGG+TGG - chr3_3:67250998-67251017 None:intergenic 60.0%
GTACGCAGCAGCGTTCTGTG+GGG - chr3_3:67251454-67251473 None:intergenic 60.0%
TTACCGTGACGTTTCGGCGC+CGG + chr3_3:67251671-67251690 Msa0466520:CDS 60.0%
AGTTCTGCTCAGCCGCTTCC+CGG - chr3_3:67251693-67251712 None:intergenic 60.0%
! TTGGAGCCATGTGAGGGCGT+AGG - chr3_3:67250893-67250912 None:intergenic 60.0%
! GGCGGGGATGAGGTATTTGG+TGG - chr3_3:67250998-67251017 None:intergenic 60.0%
GTACGCAGCAGCGTTCTGTG+GGG - chr3_3:67251454-67251473 None:intergenic 60.0%
TTACCGTGACGTTTCGGCGC+CGG + chr3_3:67251671-67251690 Msa0466520:CDS 60.0%
AGTTCTGCTCAGCCGCTTCC+CGG - chr3_3:67251693-67251712 None:intergenic 60.0%
TACCGTGACGTTTCGGCGCC+GGG + chr3_3:67251672-67251691 Msa0466520:CDS 65.0%
! TTCCCGGCGCCGAAACGTCA+CGG - chr3_3:67251677-67251696 None:intergenic 65.0%
TACCGTGACGTTTCGGCGCC+GGG + chr3_3:67251672-67251691 Msa0466520:CDS 65.0%
! TTCCCGGCGCCGAAACGTCA+CGG - chr3_3:67251677-67251696 None:intergenic 65.0%
! GACGTTTCGGCGCCGGGAAG+CGG + chr3_3:67251678-67251697 Msa0466520:CDS 70.0%
! GACGTTTCGGCGCCGGGAAG+CGG + chr3_3:67251678-67251697 Msa0466520:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 67250313 67252119 67250313 ID=Msa0466520;Name=Msa0466520
chr3_3 mRNA 67250313 67252119 67250313 ID=Msa0466520-mRNA-1;Parent=Msa0466520;Name=Msa0466520-mRNA-1;_AED=0.02;_eAED=0.02;_QI=36|1|1|1|1|1|2|415|362
chr3_3 exon 67250313 67250412 67250313 ID=Msa0466520-mRNA-1:exon:15436;Parent=Msa0466520-mRNA-1
chr3_3 exon 67250680 67252119 67250680 ID=Msa0466520-mRNA-1:exon:15437;Parent=Msa0466520-mRNA-1
chr3_3 five_prime_UTR 67250313 67250348 67250313 ID=Msa0466520-mRNA-1:five_prime_utr;Parent=Msa0466520-mRNA-1
chr3_3 CDS 67250349 67250412 67250349 ID=Msa0466520-mRNA-1:cds;Parent=Msa0466520-mRNA-1
chr3_3 CDS 67250680 67251704 67250680 ID=Msa0466520-mRNA-1:cds;Parent=Msa0466520-mRNA-1
chr3_3 three_prime_UTR 67251705 67252119 67251705 ID=Msa0466520-mRNA-1:three_prime_utr;Parent=Msa0466520-mRNA-1
Gene Sequence

>Msa0466520

ATGCATCGTCTACTCATTCTTTCCATCCTCATTTCCTCATACCTCTCACTTCCACTACTTGCAGATGGTAATTCCATTGGAGTGAACTATGGTCGCATAGCAAACAACCTACCCTCAGCATTCAAAGTAGTTAAGCTTCTAAAATCACAAGGAATCGACCGGGTCAAACTCTACGACACCGACCCGGCCGTTCTAAAATCCTTATCCGGATCCGGAATCAAAGTAACCGTAAACCTCCCAAACGAACAACTCTTCTATACAGCCAAAAAACTTTCCTACGCCCTCACATGGCTCCAAAAAAACGTCGTCGTTTACCACCCCAAAACCCAAATAGAAGCCATCGCCGTCGGTAATGAAGTCTTCGTGGACACACACAACACCACCAAATACCTCATCCCCGCCATGAAAAACATTCACAAAGCTTTAATCAAATTCAACCTCCACAATTCCATCAAAATCTCTTCACCAATCGCTTTATCTGCTCTCGGATCCTCTTATCCGTCTTCAACCGGGTCATTCAAACCCGATCTCATAGAACCCGTAATTAAACCAATGCTAAACTTCCTCCGTGAAACGTCGTCGTATTTAATGGTCAACGTTTACCCCTTTTTCGCTTACGAGTCAAACGCTGATGTCATTTCATTAAACTACGCCCTATTTCGTGAAAACCCGGGTAATGTGGATCCAGGTAACGGGTTAAAATACTACAACATCTTCGACGCGCAAATCGACGCTGTTTTTGCAGCGCTTAACGCGCTTCAATACGACGACGTTAGAGTGGTTGTGAGTGAAACGGGTTGGCCTTCGAAAGGTGATAGTGATGAGGTGGGTGCGTCCCCACAGAACGCTGCTGCGTACAACGGTAATCTTGTTAAGAAGATTCTGAATAACGGTGGGACCCCTTTAAGACCGAATGCGAATCTGACCGTTTATTTATTTGCGCTTTTTAATGAAAATGGGAAAGTGGGACCTACTTCAGAGAGGAATTTTGGGATGTTTTATCCTGATATGAAGAAAGTTTATGATGTTCCGTTTACTGTGGCGGGGTTGAAGAGTTACCGTGACGTTTCGGCGCCGGGAAGCGGCTGA

Protein sequence

>Msa0466520

MHRLLILSILISSYLSLPLLADGNSIGVNYGRIANNLPSAFKVVKLLKSQGIDRVKLYDTDPAVLKSLSGSGIKVTVNLPNEQLFYTAKKLSYALTWLQKNVVVYHPKTQIEAIAVGNEVFVDTHNTTKYLIPAMKNIHKALIKFNLHNSIKISSPIALSALGSSYPSSTGSFKPDLIEPVIKPMLNFLRETSSYLMVNVYPFFAYESNADVISLNYALFRENPGNVDPGNGLKYYNIFDAQIDAVFAALNALQYDDVRVVVSETGWPSKGDSDEVGASPQNAAAYNGNLVKKILNNGGTPLRPNANLTVYLFALFNENGKVGPTSERNFGMFYPDMKKVYDVPFTVAGLKSYRDVSAPGSG*