AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0690320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0690320 MtrunA17_Chr4g0038891 98.324 179 3 0 1 179 1 179 4.55e-132 367
Msa0690320 MtrunA17_Chr5g0396451 85.311 177 26 0 1 177 1 177 1.04e-114 323
Msa0690320 MtrunA17_Chr1g0199951 66.871 163 53 1 18 179 27 189 2.61e-75 224
Msa0690320 MtrunA17_Chr4g0060351 46.853 143 75 1 30 171 2 144 2.56e-40 134
Msa0690320 MtrunA17_Chr8g0362321 45.517 145 78 1 30 173 2 146 4.22e-40 133
Msa0690320 MtrunA17_Chr2g0316201 46.094 128 69 0 35 162 8 135 1.52e-35 121
Msa0690320 MtrunA17_Chr2g0316211 45.669 127 69 0 36 162 9 135 8.61e-35 119
Msa0690320 MtrunA17_Chr4g0037011 44.715 123 68 0 35 157 4 126 5.98e-34 117
Msa0690320 MtrunA17_Chr3g0108261 44.355 124 69 0 35 158 4 127 1.04e-33 116
Msa0690320 MtrunA17_Chr8g0369311 42.537 134 77 0 29 162 54 187 1.10e-33 118
Msa0690320 MtrunA17_Chr5g0432831 44.355 124 69 0 35 158 4 127 1.16e-33 116
Msa0690320 MtrunA17_Chr7g0275361 43.548 124 70 0 35 158 4 127 3.04e-33 115
Msa0690320 MtrunA17_Chr1g0154011 42.969 128 73 0 35 162 4 131 7.24e-33 114
Msa0690320 MtrunA17_Chr4g0031181 36.641 131 69 2 57 173 30 160 1.35e-26 99.4
Msa0690320 MtrunA17_Chr8g0378601 38.710 124 76 0 35 158 25 148 3.37e-26 98.2
Msa0690320 MtrunA17_Chr2g0328001 36.641 131 69 2 57 173 30 160 9.94e-25 94.4
Msa0690320 MtrunA17_Chr3g0131871 37.778 135 80 3 36 168 6 138 4.84e-24 93.2
Msa0690320 MtrunA17_Chr3g0139901 38.393 112 68 1 47 157 20 131 2.56e-23 90.5
Msa0690320 MtrunA17_Chr4g0053191 36.620 142 82 3 36 169 8 149 1.62e-21 85.9
Msa0690320 MtrunA17_Chr5g0401831 35.616 146 86 3 36 173 8 153 1.96e-21 85.5
Msa0690320 MtrunA17_Chr4g0059291 35.200 125 76 4 35 157 6 127 1.51e-19 81.3
Msa0690320 MtrunA17_Chr5g0403591 32.090 134 87 2 36 169 33 162 9.07e-18 76.6
Msa0690320 MtrunA17_Chr8g0348701 33.600 125 78 4 35 157 6 127 1.87e-17 75.9
Msa0690320 MtrunA17_Chr7g0254701 30.968 155 99 2 18 171 3 150 2.62e-17 77.0
Msa0690320 MtrunA17_Chr8g0387131 33.333 129 81 4 31 157 2 127 6.36e-17 74.3
Msa0690320 MtrunA17_Chr8g0372391 36.364 99 61 2 36 133 19 116 1.77e-15 70.1
Msa0690320 MtrunA17_Chr5g0404931 34.906 106 67 2 30 134 13 117 3.04e-14 67.0
Msa0690320 MtrunA17_Chr4g0068301 29.530 149 87 5 33 174 11 148 2.60e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0690320 AT3G20060.1 80.791 177 30 1 1 173 1 177 1.86e-101 290
Msa0690320 AT1G50490.1 81.111 180 31 1 1 177 1 180 3.25e-97 279
Msa0690320 AT3G20060.2 86.765 136 18 0 42 177 1 136 3.12e-87 252
Msa0690320 AT2G02760.1 46.154 143 76 1 30 171 2 144 1.85e-39 132
Msa0690320 AT2G02760.2 46.154 143 76 1 30 171 2 144 1.85e-39 132
Msa0690320 AT2G02760.4 46.154 143 76 1 30 171 2 144 1.85e-39 132
Msa0690320 AT2G02760.3 46.154 143 76 1 30 171 2 144 1.85e-39 132
Msa0690320 AT1G14400.1 46.154 143 76 1 30 171 2 144 1.95e-39 132
Msa0690320 AT1G14400.2 46.154 143 76 1 30 171 2 144 1.95e-39 132
Msa0690320 AT5G62540.1 46.479 142 74 2 30 169 2 143 5.46e-37 125
Msa0690320 AT1G78870.2 46.094 128 69 0 35 162 8 135 2.21e-35 121
Msa0690320 AT1G16890.2 45.312 128 70 0 35 162 8 135 8.04e-35 120
Msa0690320 AT5G56150.1 45.161 124 68 0 35 158 4 127 4.91e-34 118
Msa0690320 AT1G16890.3 46.923 130 67 1 35 162 15 144 5.28e-34 118
Msa0690320 AT1G64230.2 44.355 124 69 0 35 158 4 127 1.84e-33 116
Msa0690320 AT1G64230.1 44.355 124 69 0 35 158 4 127 1.84e-33 116
Msa0690320 AT2G16740.1 41.176 136 79 1 35 169 4 139 2.29e-33 116
Msa0690320 AT4G27960.1 41.860 129 75 0 35 163 4 132 2.52e-33 116
Msa0690320 AT3G08700.2 42.029 138 78 2 35 170 4 141 6.31e-33 115
Msa0690320 AT3G08700.1 42.029 138 78 2 35 170 4 141 6.31e-33 115
Msa0690320 AT3G08690.2 43.548 124 70 0 35 158 4 127 6.76e-33 115
Msa0690320 AT3G08690.1 43.548 124 70 0 35 158 4 127 6.76e-33 115
Msa0690320 AT5G53300.2 41.085 129 76 0 35 163 4 132 1.11e-32 114
Msa0690320 AT5G53300.4 41.085 129 76 0 35 163 4 132 1.11e-32 114
Msa0690320 AT5G53300.1 41.085 129 76 0 35 163 4 132 1.11e-32 114
Msa0690320 AT5G41700.5 42.742 124 71 0 35 158 4 127 1.46e-32 114
Msa0690320 AT5G41700.2 42.742 124 71 0 35 158 4 127 1.46e-32 114
Msa0690320 AT5G41700.1 42.742 124 71 0 35 158 4 127 1.46e-32 114
Msa0690320 AT4G27960.2 41.860 129 75 0 35 163 34 162 4.08e-32 114
Msa0690320 AT5G41700.4 43.200 125 70 1 35 158 4 128 7.01e-31 110
Msa0690320 AT1G64230.3 41.353 133 69 1 35 158 4 136 1.97e-30 108
Msa0690320 AT1G64230.5 46.602 103 55 0 56 158 67 169 1.31e-29 107
Msa0690320 AT1G64230.4 46.602 103 55 0 56 158 67 169 1.31e-29 107
Msa0690320 AT1G16890.1 50.526 95 47 0 68 162 8 102 4.80e-29 104
Msa0690320 AT1G78870.4 50.526 95 47 0 68 162 8 102 5.23e-29 104
Msa0690320 AT1G78870.3 45.714 105 57 0 35 139 8 112 5.86e-28 101
Msa0690320 AT1G78870.1 50.000 96 47 1 68 162 8 103 1.30e-27 100
Msa0690320 AT3G13550.1 37.500 136 85 0 35 170 39 174 6.25e-27 100
Msa0690320 AT1G36340.2 40.876 137 79 2 26 162 3 137 6.09e-26 97.4
Msa0690320 AT1G36340.1 40.876 137 79 2 26 162 3 137 6.09e-26 97.4
Msa0690320 AT5G50870.1 41.935 124 67 3 34 155 4 124 1.12e-25 97.8
Msa0690320 AT5G50870.2 41.935 124 67 3 34 155 4 124 1.40e-25 97.8
Msa0690320 AT5G56150.2 43.000 100 57 0 35 134 4 103 1.78e-25 95.1
Msa0690320 AT5G41700.3 40.385 104 62 0 35 138 4 107 2.55e-24 93.2
Msa0690320 AT3G13550.2 39.640 111 67 0 35 145 39 149 3.61e-24 93.2
Msa0690320 AT3G55380.1 35.115 131 71 2 57 173 31 161 8.80e-24 92.4
Msa0690320 AT5G53300.3 40.404 99 59 0 35 133 4 102 9.77e-24 90.5
Msa0690320 AT5G59300.1 35.115 131 71 2 57 173 30 160 9.86e-24 92.0
Msa0690320 AT3G46460.1 35.878 131 70 2 57 173 30 160 1.70e-23 91.7
Msa0690320 AT5G25760.1 38.739 111 67 1 48 157 21 131 3.45e-23 90.5
Msa0690320 AT5G25760.2 38.739 111 67 1 48 157 21 131 3.45e-23 90.5
Msa0690320 AT1G63800.1 37.600 125 73 4 35 157 6 127 5.89e-21 85.5
Msa0690320 AT3G57870.1 36.620 142 82 3 36 169 9 150 1.62e-20 83.6
Msa0690320 AT5G41340.1 36.800 125 74 4 35 157 6 127 2.16e-20 84.0
Msa0690320 AT2G18600.1 34.959 123 77 3 36 157 35 155 5.86e-19 80.1
Msa0690320 AT2G18600.2 34.959 123 77 3 36 157 35 155 5.86e-19 80.1
Msa0690320 AT1G63800.2 40.217 92 53 2 68 157 21 112 8.69e-19 79.3
Msa0690320 AT2G46030.5 35.200 125 76 4 35 157 6 127 1.34e-18 79.3
Msa0690320 AT2G46030.1 35.200 125 76 4 35 157 6 127 1.34e-18 79.3
Msa0690320 AT5G05080.2 33.099 142 93 2 32 172 10 150 7.36e-18 78.6
Msa0690320 AT5G05080.3 33.099 142 93 2 32 172 10 150 7.36e-18 78.6
Msa0690320 AT5G05080.1 33.099 142 93 2 32 172 10 150 7.36e-18 78.6
Msa0690320 AT5G05080.4 33.099 142 93 2 32 172 10 150 7.36e-18 78.6
Msa0690320 AT2G46030.3 35.200 125 76 4 35 157 78 199 9.40e-18 78.6
Msa0690320 AT4G36800.2 31.148 122 83 1 36 157 34 154 5.57e-17 75.1
Msa0690320 AT4G36800.1 31.148 122 83 1 36 157 34 154 5.57e-17 75.1
Msa0690320 AT3G55380.2 27.907 172 75 4 51 173 24 195 2.04e-16 73.9
Msa0690320 AT3G46460.3 33.333 111 60 2 77 173 8 118 5.41e-16 70.9
Msa0690320 AT3G46460.2 33.333 111 60 2 77 173 8 118 5.41e-16 70.9
Msa0690320 AT2G46030.4 35.644 101 63 2 59 157 30 130 7.57e-16 72.0
Msa0690320 AT2G46030.2 35.644 101 63 2 59 157 30 130 7.57e-16 72.0
Msa0690320 AT5G41340.2 40.000 85 49 2 75 157 8 92 8.47e-16 71.2
Msa0690320 AT3G24515.1 37.391 115 63 4 68 173 51 165 1.00e-15 74.3
Msa0690320 AT3G24515.3 37.391 115 63 4 68 173 76 190 1.45e-15 73.9
Msa0690320 AT1G45050.1 33.929 112 72 2 24 134 7 117 6.55e-15 68.9
Msa0690320 AT1G75440.1 34.234 111 71 2 24 133 7 116 2.73e-14 67.4
Msa0690320 AT5G42990.1 33.929 112 72 2 24 134 7 117 2.87e-14 67.4
Msa0690320 AT4G36410.1 35.354 99 62 2 36 133 19 116 3.98e-14 67.0
Msa0690320 AT2G32790.1 38.017 121 72 2 53 173 51 168 4.83e-14 67.0
Msa0690320 AT3G17000.1 32.743 113 67 3 34 141 13 121 7.26e-12 62.8

Find 53 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATAAAATGATTTGTTAAA+AGG 0.148752 4_4:-58029669 None:intergenic
TTGACTTTAGGAGCCTTAAA+AGG 0.184751 4_4:-58028887 None:intergenic
ATGGATCACCTAAAACTAAA+TGG 0.199370 4_4:-58029606 None:intergenic
TTGTTTGTTTATAGGATAAA+TGG 0.261888 4_4:+58029063 Msa0690320:intron
CATCCCAATGTTGATCTTCA+TGG 0.269716 4_4:+58028929 Msa0690320:CDS
GCCTTCAAACACTGTATCTT+TGG 0.285480 4_4:-58028825 None:intergenic
AAGAAGAAGAAATGAAAATA+TGG 0.309316 4_4:-58027440 None:intergenic
CTGTCCATCCAAAGTCTTCT+TGG 0.336173 4_4:+58029116 Msa0690320:CDS
TGTCAGATGAGCGGTGATTC+TGG 0.340319 4_4:+58028743 Msa0690320:intron
GAATGTGTTATACAGATTAC+AGG 0.358784 4_4:+58029463 Msa0690320:intron
GTAGTTTCAAACTTGACTTT+AGG 0.379535 4_4:-58028899 None:intergenic
TTGTGGAAAGGAACAATAAC+AGG 0.394846 4_4:+58028800 Msa0690320:CDS
ATCCACAAGCAGCACAGCTT+TGG 0.411990 4_4:+58029352 Msa0690320:CDS
GCCTTAAAAGGGTAATCATT+AGG 0.415557 4_4:-58028875 None:intergenic
TATATGCTTGGACATACTTC+AGG 0.420859 4_4:+58028955 Msa0690320:CDS
AGCATCGGTGTTCCCATTGA+TGG 0.425940 4_4:-58027512 None:intergenic
GTCTGAATTGATGTCTTTGA+TGG 0.426742 4_4:+58028499 Msa0690320:CDS
CTCCAAAGCTGTGCTGCTTG+TGG 0.432715 4_4:-58029354 None:intergenic
ATTCCACCTCTGTTCTCAAA+AGG 0.440278 4_4:+58027590 Msa0690320:CDS
TGTGCTGCTTGTGGATTTAG+TGG 0.440911 4_4:-58029345 None:intergenic
TTTAGTGGTGAACTAATGTT+TGG 0.452232 4_4:-58029330 None:intergenic
GTCTACCTCCAAGAAGACTT+TGG 0.472732 4_4:-58029124 None:intergenic
AAGAATATGTTGTCTTCCTC+AGG 0.473205 4_4:-58028779 None:intergenic
TGGATCACCTAAAACTAAAT+GGG 0.480653 4_4:-58029605 None:intergenic
TGACTTTAGGAGCCTTAAAA+GGG 0.487045 4_4:-58028886 None:intergenic
ATCAACATTGGGATGGAAGC+AGG 0.492019 4_4:-58028921 None:intergenic
GAAAATCAAATGAATCGAAT+CGG 0.506136 4_4:-58027482 None:intergenic
TTGCCATGAAGATCAACATT+GGG 0.507321 4_4:-58028932 None:intergenic
CTATCATTCAAGTTGGAGAA+AGG 0.509682 4_4:+58029543 Msa0690320:intron
TCTTCATGGCAATATATGCT+TGG 0.513262 4_4:+58028943 Msa0690320:CDS
TTATGCTCTACTGATATGGT+CGG 0.514282 4_4:+58029637 Msa0690320:three_prime_UTR
AACAATGGGTTGAGCAGCAT+CGG 0.515118 4_4:-58027527 None:intergenic
GAGGTGGAATCAACGGACTT+AGG 0.525977 4_4:-58027577 None:intergenic
AAGATGGTGAATTGTGAAGA+GGG 0.533917 4_4:-58027406 None:intergenic
ACCTCCAAGAAGACTTTGGA+TGG 0.537043 4_4:-58029120 None:intergenic
TCCATCCAAAGTCTTCTTGG+AGG 0.548893 4_4:+58029119 Msa0690320:CDS
AAGGTCTAAGCAGTAGCACT+TGG 0.554785 4_4:-58029513 None:intergenic
ACCAAAGATACAGTGTTTGA+AGG 0.558474 4_4:+58028824 Msa0690320:CDS
GAAGATGGTGAATTGTGAAG+AGG 0.560392 4_4:-58027407 None:intergenic
GACAACATATTCTTGTGGAA+AGG 0.561762 4_4:+58028788 Msa0690320:CDS
ACGGACTTAGGAGGAGGAAG+AGG 0.570689 4_4:-58027565 None:intergenic
GAGAACAGAGGTGGAATCAA+CGG 0.579252 4_4:-58027584 None:intergenic
TTATACAGATTACAGGAAGA+TGG 0.582106 4_4:+58029470 Msa0690320:intron
ATTGCCATGAAGATCAACAT+TGG 0.588583 4_4:-58028933 None:intergenic
TATGGAAGTGAAGAAGAAGA+TGG 0.594221 4_4:-58027422 None:intergenic
GAATCAACGGACTTAGGAGG+AGG 0.597125 4_4:-58027571 None:intergenic
AGGAAGACAACATATTCTTG+TGG 0.600574 4_4:+58028783 Msa0690320:CDS
GTTGATTTAAAATGAAACGA+TGG 0.610150 4_4:-58027377 None:intergenic
GTGGAATCAACGGACTTAGG+AGG 0.610762 4_4:-58027574 None:intergenic
CAGCTTTGGAGCAATCAAGA+AGG 0.619795 4_4:+58029366 Msa0690320:CDS
CATGAAGATCAACATTGGGA+TGG 0.643434 4_4:-58028928 None:intergenic
TACAGATTACAGGAAGATGG+TGG 0.659983 4_4:+58029473 Msa0690320:intron
TGATTGGACTGTCAGATGAG+CGG 0.704407 4_4:+58028734 Msa0690320:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGAAAAATGTATAAATAA+AGG + chr4_4:58028036-58028055 Msa0690320:intron 10.0%
!! AAGAAAAATGTATAAATAAA+GGG + chr4_4:58028037-58028056 Msa0690320:intron 10.0%
!! TAAAAAGTTAAAAAAGAATT+AGG - chr4_4:58029299-58029318 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG + chr4_4:58028036-58028055 Msa0690320:intron 10.0%
!! AAGAAAAATGTATAAATAAA+GGG + chr4_4:58028037-58028056 Msa0690320:intron 10.0%
!! TAAAAAGTTAAAAAAGAATT+AGG - chr4_4:58029299-58029318 None:intergenic 10.0%
!! TAAAAGAGAGATTTAATAAT+AGG - chr4_4:58027627-58027646 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG + chr4_4:58028038-58028057 Msa0690320:intron 15.0%
!! TAATTAGAGTTATATTGTAT+TGG + chr4_4:58028101-58028120 Msa0690320:intron 15.0%
!! AATTAGAGTTATATTGTATT+GGG + chr4_4:58028102-58028121 Msa0690320:intron 15.0%
!! ACAAATGACAATAATAATAA+GGG - chr4_4:58028392-58028411 None:intergenic 15.0%
!! TACAAATGACAATAATAATA+AGG - chr4_4:58028393-58028412 None:intergenic 15.0%
!!! TATATGTGTAAAACTATTTT+AGG + chr4_4:58029229-58029248 Msa0690320:intron 15.0%
!!! AAAAATCATTAGAACTATTT+TGG - chr4_4:58029442-58029461 None:intergenic 15.0%
!!! AAAATAGTTCTAATGATTTT+TGG + chr4_4:58029441-58029460 Msa0690320:intron 15.0%
!!! ACATAAAATGATTTGTTAAA+AGG - chr4_4:58029672-58029691 None:intergenic 15.0%
!! TAAAAGAGAGATTTAATAAT+AGG - chr4_4:58027627-58027646 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG + chr4_4:58028038-58028057 Msa0690320:intron 15.0%
!! TAATTAGAGTTATATTGTAT+TGG + chr4_4:58028101-58028120 Msa0690320:intron 15.0%
!! AATTAGAGTTATATTGTATT+GGG + chr4_4:58028102-58028121 Msa0690320:intron 15.0%
!! ACAAATGACAATAATAATAA+GGG - chr4_4:58028392-58028411 None:intergenic 15.0%
!! TACAAATGACAATAATAATA+AGG - chr4_4:58028393-58028412 None:intergenic 15.0%
!!! TATATGTGTAAAACTATTTT+AGG + chr4_4:58029229-58029248 Msa0690320:intron 15.0%
!!! AAAAATCATTAGAACTATTT+TGG - chr4_4:58029442-58029461 None:intergenic 15.0%
!!! AAAATAGTTCTAATGATTTT+TGG + chr4_4:58029441-58029460 Msa0690320:intron 15.0%
!!! ACATAAAATGATTTGTTAAA+AGG - chr4_4:58029672-58029691 None:intergenic 15.0%
!! AAGAAGAAGAAATGAAAATA+TGG - chr4_4:58027443-58027462 None:intergenic 20.0%
!! AAAGTAGAATATATTGTACT+GGG + chr4_4:58028061-58028080 Msa0690320:intron 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG + chr4_4:58028134-58028153 Msa0690320:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + chr4_4:58028171-58028190 Msa0690320:intron 20.0%
!! TTGTTTGTTTGTTTGTTTAT+AGG + chr4_4:58029055-58029074 Msa0690320:intron 20.0%
!! TTGTTTGTTTATAGGATAAA+TGG + chr4_4:58029063-58029082 Msa0690320:intron 20.0%
!! ACACTAATCTAAATTGTATA+CGG - chr4_4:58029261-58029280 None:intergenic 20.0%
!! GTAGAGCATAAAAAAATAAA+TGG - chr4_4:58029628-58029647 None:intergenic 20.0%
!!! TTGATTTAAAATGAAACGAT+CGG - chr4_4:58027379-58027398 None:intergenic 20.0%
!! AAGAAGAAGAAATGAAAATA+TGG - chr4_4:58027443-58027462 None:intergenic 20.0%
!! AAAGTAGAATATATTGTACT+GGG + chr4_4:58028061-58028080 Msa0690320:intron 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG + chr4_4:58028134-58028153 Msa0690320:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + chr4_4:58028171-58028190 Msa0690320:intron 20.0%
!! TTGTTTGTTTGTTTGTTTAT+AGG + chr4_4:58029055-58029074 Msa0690320:intron 20.0%
!! TTGTTTGTTTATAGGATAAA+TGG + chr4_4:58029063-58029082 Msa0690320:intron 20.0%
!! ACACTAATCTAAATTGTATA+CGG - chr4_4:58029261-58029280 None:intergenic 20.0%
!! GTAGAGCATAAAAAAATAAA+TGG - chr4_4:58029628-58029647 None:intergenic 20.0%
! GAAAATCAAATGAATCGAAT+CGG - chr4_4:58027485-58027504 None:intergenic 25.0%
!!! TTCGATTCATTTGATTTTCA+TGG + chr4_4:58027486-58027505 Msa0690320:exon 25.0%
! GAACAAATGATTGTGATAAA+TGG + chr4_4:58027924-58027943 Msa0690320:intron 25.0%
! GAAAGTAGAATATATTGTAC+TGG + chr4_4:58028060-58028079 Msa0690320:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr4_4:58028170-58028189 Msa0690320:intron 25.0%
!!! TGTTTTGCATTTTTTGTGAT+TGG + chr4_4:58028718-58028737 Msa0690320:intron 25.0%
!!! ATGAAAACCCATTTAGTTTT+AGG + chr4_4:58029598-58029617 Msa0690320:three_prime_UTR 25.0%
!!! TTTTTTATGCTCTACTGATA+TGG + chr4_4:58029633-58029652 Msa0690320:three_prime_UTR 25.0%
! GAAAATCAAATGAATCGAAT+CGG - chr4_4:58027485-58027504 None:intergenic 25.0%
!!! TTCGATTCATTTGATTTTCA+TGG + chr4_4:58027486-58027505 Msa0690320:exon 25.0%
! GAACAAATGATTGTGATAAA+TGG + chr4_4:58027924-58027943 Msa0690320:intron 25.0%
! GAAAGTAGAATATATTGTAC+TGG + chr4_4:58028060-58028079 Msa0690320:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr4_4:58028170-58028189 Msa0690320:intron 25.0%
!!! TGTTTTGCATTTTTTGTGAT+TGG + chr4_4:58028718-58028737 Msa0690320:intron 25.0%
!!! ATGAAAACCCATTTAGTTTT+AGG + chr4_4:58029598-58029617 Msa0690320:three_prime_UTR 25.0%
!!! TTTTTTATGCTCTACTGATA+TGG + chr4_4:58029633-58029652 Msa0690320:three_prime_UTR 25.0%
ATGTTAATGTATGATGTCGT+CGG - chr4_4:58027754-58027773 None:intergenic 30.0%
TCATACATTAACATGATCAG+TGG + chr4_4:58027760-58027779 Msa0690320:intron 30.0%
CATACATTAACATGATCAGT+GGG + chr4_4:58027761-58027780 Msa0690320:intron 30.0%
! TTGAAATGGCTCAGTTATTT+TGG + chr4_4:58028148-58028167 Msa0690320:intron 30.0%
!! TGAAATGGCTCAGTTATTTT+GGG + chr4_4:58028149-58028168 Msa0690320:intron 30.0%
TGAAAAAACTAAGCTTCACA+AGG - chr4_4:58028317-58028336 None:intergenic 30.0%
!! TAGGAGTACTAGTTAAGAAA+TGG - chr4_4:58028354-58028373 None:intergenic 30.0%
!!! CACGTTCATTATTGTTTTTG+AGG + chr4_4:58028562-58028581 Msa0690320:intron 30.0%
TCTGAACCTCAACAAAATTA+AGG - chr4_4:58028613-58028632 None:intergenic 30.0%
CATGTATTTAGCTAATAGTG+TGG + chr4_4:58028671-58028690 Msa0690320:intron 30.0%
! TCCTAATGATTACCCTTTTA+AGG + chr4_4:58028874-58028893 Msa0690320:CDS 30.0%
GTAGTTTCAAACTTGACTTT+AGG - chr4_4:58028902-58028921 None:intergenic 30.0%
AGGTAATGTGAAATCATCTA+AGG + chr4_4:58028975-58028994 Msa0690320:intron 30.0%
!!! ATTTGTTGTTGACCTTGTTT+TGG + chr4_4:58029013-58029032 Msa0690320:intron 30.0%
TTTAGTGGTGAACTAATGTT+TGG - chr4_4:58029333-58029352 None:intergenic 30.0%
ACAAGACTCATAATGATTGA+AGG - chr4_4:58029399-58029418 None:intergenic 30.0%
! AATCATTATGAGTCTTGTGA+TGG + chr4_4:58029401-58029420 Msa0690320:intron 30.0%
GAATGTGTTATACAGATTAC+AGG + chr4_4:58029463-58029482 Msa0690320:intron 30.0%
TTATACAGATTACAGGAAGA+TGG + chr4_4:58029470-58029489 Msa0690320:intron 30.0%
TGGATCACCTAAAACTAAAT+GGG - chr4_4:58029608-58029627 None:intergenic 30.0%
ATGGATCACCTAAAACTAAA+TGG - chr4_4:58029609-58029628 None:intergenic 30.0%
ATGTTAATGTATGATGTCGT+CGG - chr4_4:58027754-58027773 None:intergenic 30.0%
TCATACATTAACATGATCAG+TGG + chr4_4:58027760-58027779 Msa0690320:intron 30.0%
CATACATTAACATGATCAGT+GGG + chr4_4:58027761-58027780 Msa0690320:intron 30.0%
! TTGAAATGGCTCAGTTATTT+TGG + chr4_4:58028148-58028167 Msa0690320:intron 30.0%
!! TGAAATGGCTCAGTTATTTT+GGG + chr4_4:58028149-58028168 Msa0690320:intron 30.0%
TGAAAAAACTAAGCTTCACA+AGG - chr4_4:58028317-58028336 None:intergenic 30.0%
!! TAGGAGTACTAGTTAAGAAA+TGG - chr4_4:58028354-58028373 None:intergenic 30.0%
!!! CACGTTCATTATTGTTTTTG+AGG + chr4_4:58028562-58028581 Msa0690320:intron 30.0%
TCTGAACCTCAACAAAATTA+AGG - chr4_4:58028613-58028632 None:intergenic 30.0%
CATGTATTTAGCTAATAGTG+TGG + chr4_4:58028671-58028690 Msa0690320:intron 30.0%
! TCCTAATGATTACCCTTTTA+AGG + chr4_4:58028874-58028893 Msa0690320:CDS 30.0%
GTAGTTTCAAACTTGACTTT+AGG - chr4_4:58028902-58028921 None:intergenic 30.0%
AGGTAATGTGAAATCATCTA+AGG + chr4_4:58028975-58028994 Msa0690320:intron 30.0%
!!! ATTTGTTGTTGACCTTGTTT+TGG + chr4_4:58029013-58029032 Msa0690320:intron 30.0%
TTTAGTGGTGAACTAATGTT+TGG - chr4_4:58029333-58029352 None:intergenic 30.0%
ACAAGACTCATAATGATTGA+AGG - chr4_4:58029399-58029418 None:intergenic 30.0%
! AATCATTATGAGTCTTGTGA+TGG + chr4_4:58029401-58029420 Msa0690320:intron 30.0%
GAATGTGTTATACAGATTAC+AGG + chr4_4:58029463-58029482 Msa0690320:intron 30.0%
TTATACAGATTACAGGAAGA+TGG + chr4_4:58029470-58029489 Msa0690320:intron 30.0%
TGGATCACCTAAAACTAAAT+GGG - chr4_4:58029608-58029627 None:intergenic 30.0%
ATGGATCACCTAAAACTAAA+TGG - chr4_4:58029609-58029628 None:intergenic 30.0%
! TGAATTGTGAAGAGGGTTTT+TGG - chr4_4:58027402-58027421 None:intergenic 35.0%
AAGATGGTGAATTGTGAAGA+GGG - chr4_4:58027409-58027428 None:intergenic 35.0%
TATGGAAGTGAAGAAGAAGA+TGG - chr4_4:58027425-58027444 None:intergenic 35.0%
! ATTTTCATGGCTACCATCAA+TGG + chr4_4:58027499-58027518 Msa0690320:exon 35.0%
! TTTTCATGGCTACCATCAAT+GGG + chr4_4:58027500-58027519 Msa0690320:exon 35.0%
!! TGTTTTGTTGGAGCAACAAT+GGG - chr4_4:58027544-58027563 None:intergenic 35.0%
!! TTGTTTTGTTGGAGCAACAA+TGG - chr4_4:58027545-58027564 None:intergenic 35.0%
CTTGTATGCATTCTTAGATG+AGG + chr4_4:58027794-58027813 Msa0690320:intron 35.0%
!! TGTTCGCTTTTATGTCACTT+TGG - chr4_4:58027909-58027928 None:intergenic 35.0%
ATCTGTGTGAAAAACCAAAC+TGG - chr4_4:58028016-58028035 None:intergenic 35.0%
AGAAAATGGGTCAGATATTC+CGG + chr4_4:58028184-58028203 Msa0690320:intron 35.0%
ACTACAAGTGTCTAAGTAAG+TGG + chr4_4:58028249-58028268 Msa0690320:intron 35.0%
CTACAAGTGTCTAAGTAAGT+GGG + chr4_4:58028250-58028269 Msa0690320:intron 35.0%
ATGTAGCCGTAACACATAAA+TGG - chr4_4:58028279-58028298 None:intergenic 35.0%
!!! ACACGTTCTTTGTTTTGTGT+TGG + chr4_4:58028444-58028463 Msa0690320:intron 35.0%
GCTCAACACACAAATCAAAT+TGG - chr4_4:58028471-58028490 None:intergenic 35.0%
GTCTGAATTGATGTCTTTGA+TGG + chr4_4:58028499-58028518 Msa0690320:CDS 35.0%
ACAATGTGCGAATGTAACTT+TGG - chr4_4:58028643-58028662 None:intergenic 35.0%
AAGAATATGTTGTCTTCCTC+AGG - chr4_4:58028782-58028801 None:intergenic 35.0%
AGGAAGACAACATATTCTTG+TGG + chr4_4:58028783-58028802 Msa0690320:CDS 35.0%
GACAACATATTCTTGTGGAA+AGG + chr4_4:58028788-58028807 Msa0690320:CDS 35.0%
TTGTGGAAAGGAACAATAAC+AGG + chr4_4:58028800-58028819 Msa0690320:CDS 35.0%
ACCAAAGATACAGTGTTTGA+AGG + chr4_4:58028824-58028843 Msa0690320:CDS 35.0%
GCCTTAAAAGGGTAATCATT+AGG - chr4_4:58028878-58028897 None:intergenic 35.0%
! TGACTTTAGGAGCCTTAAAA+GGG - chr4_4:58028889-58028908 None:intergenic 35.0%
! TTGACTTTAGGAGCCTTAAA+AGG - chr4_4:58028890-58028909 None:intergenic 35.0%
TTGCCATGAAGATCAACATT+GGG - chr4_4:58028935-58028954 None:intergenic 35.0%
ATTGCCATGAAGATCAACAT+TGG - chr4_4:58028936-58028955 None:intergenic 35.0%
TCTTCATGGCAATATATGCT+TGG + chr4_4:58028943-58028962 Msa0690320:CDS 35.0%
TATATGCTTGGACATACTTC+AGG + chr4_4:58028955-58028974 Msa0690320:CDS 35.0%
CTTGAATGATAGACTTCCAA+AGG - chr4_4:58029535-58029554 None:intergenic 35.0%
TGGAAGTCTATCATTCAAGT+TGG + chr4_4:58029536-58029555 Msa0690320:intron 35.0%
!! CTATCATTCAAGTTGGAGAA+AGG + chr4_4:58029543-58029562 Msa0690320:intron 35.0%
TTATGCTCTACTGATATGGT+CGG + chr4_4:58029637-58029656 Msa0690320:three_prime_UTR 35.0%
! TGAATTGTGAAGAGGGTTTT+TGG - chr4_4:58027402-58027421 None:intergenic 35.0%
AAGATGGTGAATTGTGAAGA+GGG - chr4_4:58027409-58027428 None:intergenic 35.0%
TATGGAAGTGAAGAAGAAGA+TGG - chr4_4:58027425-58027444 None:intergenic 35.0%
! ATTTTCATGGCTACCATCAA+TGG + chr4_4:58027499-58027518 Msa0690320:exon 35.0%
! TTTTCATGGCTACCATCAAT+GGG + chr4_4:58027500-58027519 Msa0690320:exon 35.0%
!! TGTTTTGTTGGAGCAACAAT+GGG - chr4_4:58027544-58027563 None:intergenic 35.0%
!! TTGTTTTGTTGGAGCAACAA+TGG - chr4_4:58027545-58027564 None:intergenic 35.0%
CTTGTATGCATTCTTAGATG+AGG + chr4_4:58027794-58027813 Msa0690320:intron 35.0%
!! TGTTCGCTTTTATGTCACTT+TGG - chr4_4:58027909-58027928 None:intergenic 35.0%
ATCTGTGTGAAAAACCAAAC+TGG - chr4_4:58028016-58028035 None:intergenic 35.0%
AGAAAATGGGTCAGATATTC+CGG + chr4_4:58028184-58028203 Msa0690320:intron 35.0%
ACTACAAGTGTCTAAGTAAG+TGG + chr4_4:58028249-58028268 Msa0690320:intron 35.0%
CTACAAGTGTCTAAGTAAGT+GGG + chr4_4:58028250-58028269 Msa0690320:intron 35.0%
ATGTAGCCGTAACACATAAA+TGG - chr4_4:58028279-58028298 None:intergenic 35.0%
!!! ACACGTTCTTTGTTTTGTGT+TGG + chr4_4:58028444-58028463 Msa0690320:intron 35.0%
GCTCAACACACAAATCAAAT+TGG - chr4_4:58028471-58028490 None:intergenic 35.0%
GTCTGAATTGATGTCTTTGA+TGG + chr4_4:58028499-58028518 Msa0690320:CDS 35.0%
ACAATGTGCGAATGTAACTT+TGG - chr4_4:58028643-58028662 None:intergenic 35.0%
AAGAATATGTTGTCTTCCTC+AGG - chr4_4:58028782-58028801 None:intergenic 35.0%
AGGAAGACAACATATTCTTG+TGG + chr4_4:58028783-58028802 Msa0690320:CDS 35.0%
GACAACATATTCTTGTGGAA+AGG + chr4_4:58028788-58028807 Msa0690320:CDS 35.0%
TTGTGGAAAGGAACAATAAC+AGG + chr4_4:58028800-58028819 Msa0690320:CDS 35.0%
ACCAAAGATACAGTGTTTGA+AGG + chr4_4:58028824-58028843 Msa0690320:CDS 35.0%
GCCTTAAAAGGGTAATCATT+AGG - chr4_4:58028878-58028897 None:intergenic 35.0%
! TGACTTTAGGAGCCTTAAAA+GGG - chr4_4:58028889-58028908 None:intergenic 35.0%
! TTGACTTTAGGAGCCTTAAA+AGG - chr4_4:58028890-58028909 None:intergenic 35.0%
TTGCCATGAAGATCAACATT+GGG - chr4_4:58028935-58028954 None:intergenic 35.0%
ATTGCCATGAAGATCAACAT+TGG - chr4_4:58028936-58028955 None:intergenic 35.0%
TCTTCATGGCAATATATGCT+TGG + chr4_4:58028943-58028962 Msa0690320:CDS 35.0%
TATATGCTTGGACATACTTC+AGG + chr4_4:58028955-58028974 Msa0690320:CDS 35.0%
CTTGAATGATAGACTTCCAA+AGG - chr4_4:58029535-58029554 None:intergenic 35.0%
TGGAAGTCTATCATTCAAGT+TGG + chr4_4:58029536-58029555 Msa0690320:intron 35.0%
!! CTATCATTCAAGTTGGAGAA+AGG + chr4_4:58029543-58029562 Msa0690320:intron 35.0%
TTATGCTCTACTGATATGGT+CGG + chr4_4:58029637-58029656 Msa0690320:three_prime_UTR 35.0%
GAAGATGGTGAATTGTGAAG+AGG - chr4_4:58027410-58027429 None:intergenic 40.0%
ATTCCACCTCTGTTCTCAAA+AGG + chr4_4:58027590-58027609 Msa0690320:CDS 40.0%
!! AAACCTTTTGAGAACAGAGG+TGG - chr4_4:58027596-58027615 None:intergenic 40.0%
!! GAGAAACCTTTTGAGAACAG+AGG - chr4_4:58027599-58027618 None:intergenic 40.0%
ACTTGTGTGATCCACATCAA+TGG + chr4_4:58027817-58027836 Msa0690320:intron 40.0%
ACATGAACGGTATAAGGTGT+CGG - chr4_4:58027867-58027886 None:intergenic 40.0%
ACACCTTATACCGTTCATGT+GGG + chr4_4:58027867-58027886 Msa0690320:intron 40.0%
! CAAACTGGCTCAGATAAAAC+GGG - chr4_4:58028001-58028020 None:intergenic 40.0%
! CCAAACTGGCTCAGATAAAA+CGG - chr4_4:58028002-58028021 None:intergenic 40.0%
GAAAATGGGTCAGATATTCC+GGG + chr4_4:58028185-58028204 Msa0690320:intron 40.0%
GGGCATCCATTTATGTGTTA+CGG + chr4_4:58028270-58028289 Msa0690320:intron 40.0%
!! AGGGTTTGCTAACTAGTGTT+AGG - chr4_4:58028373-58028392 None:intergenic 40.0%
! GTGACGCCTTAATTTTGTTG+AGG + chr4_4:58028604-58028623 Msa0690320:intron 40.0%
!! TGGTATATCTGCTTTTCCTG+AGG + chr4_4:58028763-58028782 Msa0690320:CDS 40.0%
GCCTTCAAACACTGTATCTT+TGG - chr4_4:58028828-58028847 None:intergenic 40.0%
CATGAAGATCAACATTGGGA+TGG - chr4_4:58028931-58028950 None:intergenic 40.0%
CATCCCAATGTTGATCTTCA+TGG + chr4_4:58028929-58028948 Msa0690320:CDS 40.0%
!!! TTGTTGACCTTGTTTTGGCT+TGG + chr4_4:58029018-58029037 Msa0690320:intron 40.0%
TACAGATTACAGGAAGATGG+TGG + chr4_4:58029473-58029492 Msa0690320:intron 40.0%
GAAGATGGTGAATTGTGAAG+AGG - chr4_4:58027410-58027429 None:intergenic 40.0%
ATTCCACCTCTGTTCTCAAA+AGG + chr4_4:58027590-58027609 Msa0690320:CDS 40.0%
!! AAACCTTTTGAGAACAGAGG+TGG - chr4_4:58027596-58027615 None:intergenic 40.0%
!! GAGAAACCTTTTGAGAACAG+AGG - chr4_4:58027599-58027618 None:intergenic 40.0%
ACTTGTGTGATCCACATCAA+TGG + chr4_4:58027817-58027836 Msa0690320:intron 40.0%
ACATGAACGGTATAAGGTGT+CGG - chr4_4:58027867-58027886 None:intergenic 40.0%
ACACCTTATACCGTTCATGT+GGG + chr4_4:58027867-58027886 Msa0690320:intron 40.0%
! CAAACTGGCTCAGATAAAAC+GGG - chr4_4:58028001-58028020 None:intergenic 40.0%
! CCAAACTGGCTCAGATAAAA+CGG - chr4_4:58028002-58028021 None:intergenic 40.0%
GAAAATGGGTCAGATATTCC+GGG + chr4_4:58028185-58028204 Msa0690320:intron 40.0%
GGGCATCCATTTATGTGTTA+CGG + chr4_4:58028270-58028289 Msa0690320:intron 40.0%
!! AGGGTTTGCTAACTAGTGTT+AGG - chr4_4:58028373-58028392 None:intergenic 40.0%
! GTGACGCCTTAATTTTGTTG+AGG + chr4_4:58028604-58028623 Msa0690320:intron 40.0%
!! TGGTATATCTGCTTTTCCTG+AGG + chr4_4:58028763-58028782 Msa0690320:CDS 40.0%
GCCTTCAAACACTGTATCTT+TGG - chr4_4:58028828-58028847 None:intergenic 40.0%
CATGAAGATCAACATTGGGA+TGG - chr4_4:58028931-58028950 None:intergenic 40.0%
CATCCCAATGTTGATCTTCA+TGG + chr4_4:58028929-58028948 Msa0690320:CDS 40.0%
!!! TTGTTGACCTTGTTTTGGCT+TGG + chr4_4:58029018-58029037 Msa0690320:intron 40.0%
TACAGATTACAGGAAGATGG+TGG + chr4_4:58029473-58029492 Msa0690320:intron 40.0%
!! AACAATGGGTTGAGCAGCAT+CGG - chr4_4:58027530-58027549 None:intergenic 45.0%
!! GGAGGAAGAGGTTGTTTTGT+TGG - chr4_4:58027556-58027575 None:intergenic 45.0%
GAGAACAGAGGTGGAATCAA+CGG - chr4_4:58027587-58027606 None:intergenic 45.0%
CATGATCAGTGGGTCTTTGT+TGG + chr4_4:58027771-58027790 Msa0690320:intron 45.0%
TGATCCACATCAATGGCACA+CGG + chr4_4:58027824-58027843 Msa0690320:intron 45.0%
GACACCTTATACCGTTCATG+TGG + chr4_4:58027866-58027885 Msa0690320:intron 45.0%
TGACCCACATGAACGGTATA+AGG - chr4_4:58027873-58027892 None:intergenic 45.0%
TACCGTTCATGTGGGTCATT+CGG + chr4_4:58027875-58027894 Msa0690320:intron 45.0%
! CCGTTTTATCTGAGCCAGTT+TGG + chr4_4:58027999-58028018 Msa0690320:intron 45.0%
ATTAAATACTCCCTCCGTCC+CGG - chr4_4:58028206-58028225 None:intergenic 45.0%
TGATTGGACTGTCAGATGAG+CGG + chr4_4:58028734-58028753 Msa0690320:intron 45.0%
ATCAACATTGGGATGGAAGC+AGG - chr4_4:58028924-58028943 None:intergenic 45.0%
CAGTATGCCAAGCCAAAACA+AGG - chr4_4:58029028-58029047 None:intergenic 45.0%
CTGTCCATCCAAAGTCTTCT+TGG + chr4_4:58029116-58029135 Msa0690320:CDS 45.0%
TCCATCCAAAGTCTTCTTGG+AGG + chr4_4:58029119-58029138 Msa0690320:CDS 45.0%
ACCTCCAAGAAGACTTTGGA+TGG - chr4_4:58029123-58029142 None:intergenic 45.0%
GTCTACCTCCAAGAAGACTT+TGG - chr4_4:58029127-58029146 None:intergenic 45.0%
!! TGTGCTGCTTGTGGATTTAG+TGG - chr4_4:58029348-58029367 None:intergenic 45.0%
!! CAGCTTTGGAGCAATCAAGA+AGG + chr4_4:58029366-58029385 Msa0690320:CDS 45.0%
AAGGTCTAAGCAGTAGCACT+TGG - chr4_4:58029516-58029535 None:intergenic 45.0%
! AGTGCTACTGCTTAGACCTT+TGG + chr4_4:58029516-58029535 Msa0690320:intron 45.0%
!! AACAATGGGTTGAGCAGCAT+CGG - chr4_4:58027530-58027549 None:intergenic 45.0%
!! GGAGGAAGAGGTTGTTTTGT+TGG - chr4_4:58027556-58027575 None:intergenic 45.0%
GAGAACAGAGGTGGAATCAA+CGG - chr4_4:58027587-58027606 None:intergenic 45.0%
CATGATCAGTGGGTCTTTGT+TGG + chr4_4:58027771-58027790 Msa0690320:intron 45.0%
TGATCCACATCAATGGCACA+CGG + chr4_4:58027824-58027843 Msa0690320:intron 45.0%
GACACCTTATACCGTTCATG+TGG + chr4_4:58027866-58027885 Msa0690320:intron 45.0%
TGACCCACATGAACGGTATA+AGG - chr4_4:58027873-58027892 None:intergenic 45.0%
TACCGTTCATGTGGGTCATT+CGG + chr4_4:58027875-58027894 Msa0690320:intron 45.0%
! CCGTTTTATCTGAGCCAGTT+TGG + chr4_4:58027999-58028018 Msa0690320:intron 45.0%
ATTAAATACTCCCTCCGTCC+CGG - chr4_4:58028206-58028225 None:intergenic 45.0%
TGATTGGACTGTCAGATGAG+CGG + chr4_4:58028734-58028753 Msa0690320:intron 45.0%
ATCAACATTGGGATGGAAGC+AGG - chr4_4:58028924-58028943 None:intergenic 45.0%
CAGTATGCCAAGCCAAAACA+AGG - chr4_4:58029028-58029047 None:intergenic 45.0%
CTGTCCATCCAAAGTCTTCT+TGG + chr4_4:58029116-58029135 Msa0690320:CDS 45.0%
TCCATCCAAAGTCTTCTTGG+AGG + chr4_4:58029119-58029138 Msa0690320:CDS 45.0%
ACCTCCAAGAAGACTTTGGA+TGG - chr4_4:58029123-58029142 None:intergenic 45.0%
GTCTACCTCCAAGAAGACTT+TGG - chr4_4:58029127-58029146 None:intergenic 45.0%
!! TGTGCTGCTTGTGGATTTAG+TGG - chr4_4:58029348-58029367 None:intergenic 45.0%
!! CAGCTTTGGAGCAATCAAGA+AGG + chr4_4:58029366-58029385 Msa0690320:CDS 45.0%
AAGGTCTAAGCAGTAGCACT+TGG - chr4_4:58029516-58029535 None:intergenic 45.0%
! AGTGCTACTGCTTAGACCTT+TGG + chr4_4:58029516-58029535 Msa0690320:intron 45.0%
!! AGCATCGGTGTTCCCATTGA+TGG - chr4_4:58027515-58027534 None:intergenic 50.0%
! GAATCAACGGACTTAGGAGG+AGG - chr4_4:58027574-58027593 None:intergenic 50.0%
! GTGGAATCAACGGACTTAGG+AGG - chr4_4:58027577-58027596 None:intergenic 50.0%
! GAGGTGGAATCAACGGACTT+AGG - chr4_4:58027580-58027599 None:intergenic 50.0%
ACCGTTCATGTGGGTCATTC+GGG + chr4_4:58027876-58027895 Msa0690320:intron 50.0%
ACCCGAATGACCCACATGAA+CGG - chr4_4:58027880-58027899 None:intergenic 50.0%
CTCAGATAAAACGGGACGGA+GGG - chr4_4:58027993-58028012 None:intergenic 50.0%
CTGGCTCAGATAAAACGGGA+CGG - chr4_4:58027997-58028016 None:intergenic 50.0%
ATGGGTCAGATATTCCGGGA+CGG + chr4_4:58028189-58028208 Msa0690320:intron 50.0%
TGTCAGATGAGCGGTGATTC+TGG + chr4_4:58028743-58028762 Msa0690320:intron 50.0%
ATCCACAAGCAGCACAGCTT+TGG + chr4_4:58029352-58029371 Msa0690320:CDS 50.0%
!! AGCATCGGTGTTCCCATTGA+TGG - chr4_4:58027515-58027534 None:intergenic 50.0%
! GAATCAACGGACTTAGGAGG+AGG - chr4_4:58027574-58027593 None:intergenic 50.0%
! GTGGAATCAACGGACTTAGG+AGG - chr4_4:58027577-58027596 None:intergenic 50.0%
! GAGGTGGAATCAACGGACTT+AGG - chr4_4:58027580-58027599 None:intergenic 50.0%
ACCGTTCATGTGGGTCATTC+GGG + chr4_4:58027876-58027895 Msa0690320:intron 50.0%
ACCCGAATGACCCACATGAA+CGG - chr4_4:58027880-58027899 None:intergenic 50.0%
CTCAGATAAAACGGGACGGA+GGG - chr4_4:58027993-58028012 None:intergenic 50.0%
CTGGCTCAGATAAAACGGGA+CGG - chr4_4:58027997-58028016 None:intergenic 50.0%
ATGGGTCAGATATTCCGGGA+CGG + chr4_4:58028189-58028208 Msa0690320:intron 50.0%
TGTCAGATGAGCGGTGATTC+TGG + chr4_4:58028743-58028762 Msa0690320:intron 50.0%
ATCCACAAGCAGCACAGCTT+TGG + chr4_4:58029352-58029371 Msa0690320:CDS 50.0%
ACGGACTTAGGAGGAGGAAG+AGG - chr4_4:58027568-58027587 None:intergenic 55.0%
! GACACCGTGTGCCATTGATG+TGG - chr4_4:58027831-58027850 None:intergenic 55.0%
GCTCAGATAAAACGGGACGG+AGG - chr4_4:58027994-58028013 None:intergenic 55.0%
GTCAGATATTCCGGGACGGA+GGG + chr4_4:58028193-58028212 Msa0690320:intron 55.0%
!! CTCCAAAGCTGTGCTGCTTG+TGG - chr4_4:58029357-58029376 None:intergenic 55.0%
ACGGACTTAGGAGGAGGAAG+AGG - chr4_4:58027568-58027587 None:intergenic 55.0%
! GACACCGTGTGCCATTGATG+TGG - chr4_4:58027831-58027850 None:intergenic 55.0%
GCTCAGATAAAACGGGACGG+AGG - chr4_4:58027994-58028013 None:intergenic 55.0%
GTCAGATATTCCGGGACGGA+GGG + chr4_4:58028193-58028212 Msa0690320:intron 55.0%
!! CTCCAAAGCTGTGCTGCTTG+TGG - chr4_4:58029357-58029376 None:intergenic 55.0%
!! AGGTGTCGGTGCACTCTGCA+GGG - chr4_4:58027853-58027872 None:intergenic 60.0%
!! AAGGTGTCGGTGCACTCTGC+AGG - chr4_4:58027854-58027873 None:intergenic 60.0%
GGTCAGATATTCCGGGACGG+AGG + chr4_4:58028192-58028211 Msa0690320:intron 60.0%
!! AGGTGTCGGTGCACTCTGCA+GGG - chr4_4:58027853-58027872 None:intergenic 60.0%
!! AAGGTGTCGGTGCACTCTGC+AGG - chr4_4:58027854-58027873 None:intergenic 60.0%
GGTCAGATATTCCGGGACGG+AGG + chr4_4:58028192-58028211 Msa0690320:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 58027379 58029741 58027379 ID=Msa0690320;Name=Msa0690320
chr4_4 mRNA 58027379 58029741 58027379 ID=Msa0690320-mRNA-1;Parent=Msa0690320;Name=Msa0690320-mRNA-1;_AED=0.20;_eAED=0.20;_QI=126|1|1|1|0.83|0.71|7|191|179
chr4_4 exon 58027379 58027611 58027379 ID=Msa0690320-mRNA-1:exon:15557;Parent=Msa0690320-mRNA-1
chr4_4 exon 58028493 58028520 58028493 ID=Msa0690320-mRNA-1:exon:15558;Parent=Msa0690320-mRNA-1
chr4_4 exon 58028749 58028976 58028749 ID=Msa0690320-mRNA-1:exon:15559;Parent=Msa0690320-mRNA-1
chr4_4 exon 58029077 58029140 58029077 ID=Msa0690320-mRNA-1:exon:15560;Parent=Msa0690320-mRNA-1
chr4_4 exon 58029328 58029387 58029328 ID=Msa0690320-mRNA-1:exon:15561;Parent=Msa0690320-mRNA-1
chr4_4 exon 58029478 58029534 58029478 ID=Msa0690320-mRNA-1:exon:15562;Parent=Msa0690320-mRNA-1
chr4_4 exon 58029555 58029741 58029555 ID=Msa0690320-mRNA-1:exon:15563;Parent=Msa0690320-mRNA-1
chr4_4 five_prime_UTR 58027379 58027504 58027379 ID=Msa0690320-mRNA-1:five_prime_utr;Parent=Msa0690320-mRNA-1
chr4_4 CDS 58027505 58027611 58027505 ID=Msa0690320-mRNA-1:cds;Parent=Msa0690320-mRNA-1
chr4_4 CDS 58028493 58028520 58028493 ID=Msa0690320-mRNA-1:cds;Parent=Msa0690320-mRNA-1
chr4_4 CDS 58028749 58028976 58028749 ID=Msa0690320-mRNA-1:cds;Parent=Msa0690320-mRNA-1
chr4_4 CDS 58029077 58029140 58029077 ID=Msa0690320-mRNA-1:cds;Parent=Msa0690320-mRNA-1
chr4_4 CDS 58029328 58029387 58029328 ID=Msa0690320-mRNA-1:cds;Parent=Msa0690320-mRNA-1
chr4_4 CDS 58029478 58029530 58029478 ID=Msa0690320-mRNA-1:cds;Parent=Msa0690320-mRNA-1
chr4_4 three_prime_UTR 58029531 58029534 58029531 ID=Msa0690320-mRNA-1:three_prime_utr;Parent=Msa0690320-mRNA-1
chr4_4 three_prime_UTR 58029555 58029741 58029555 ID=Msa0690320-mRNA-1:three_prime_utr;Parent=Msa0690320-mRNA-1
Gene Sequence

>Msa0690320

ATGGCTACCATCAATGGGAACACCGATGCTGCTCAACCCATTGTTGCTCCAACAAAACAACCTCTTCCTCCTCCTAAGTCCGTTGATTCCACCTCTGTTCTCAAAAGATTGCAGTCTGAATTGATGTCTTTGATGATGAGCGGTGATTCTGGTATATCTGCTTTTCCTGAGGAAGACAACATATTCTTGTGGAAAGGAACAATAACAGGAACCAAAGATACAGTGTTTGAAGGCACAGATTACAAGTTATCACTTTCTTTTCCTAATGATTACCCTTTTAAGGCTCCTAAAGTCAAGTTTGAAACTACCTGCTTCCATCCCAATGTTGATCTTCATGGCAATATATGCTTGGACATACTTCAGGATAAATGGTCATCTGCTTATGATGTCAGAACAATTCTACTGTCCATCCAAAGTCTTCTTGGAGAGCCAAACATTAGTTCACCACTAAATCCACAAGCAGCACAGCTTTGGAGCAATCAAGAAGATTACAGGAAGATGGTGGAGAAATTGTACAAAGCTCCAAGTGCTACTGCTTAG

Protein sequence

>Msa0690320

MATINGNTDAAQPIVAPTKQPLPPPKSVDSTSVLKRLQSELMSLMMSGDSGISAFPEEDNIFLWKGTITGTKDTVFEGTDYKLSLSFPNDYPFKAPKVKFETTCFHPNVDLHGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNPQAAQLWSNQEDYRKMVEKLYKAPSATA*