AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0182220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0182220 MtrunA17_Chr1g0209551 100.000 414 0 0 1 414 1 414 0.0 857
Msa0182220 MtrunA17_Chr5g0414471 61.461 397 138 3 13 405 22 407 0.0 514
Msa0182220 MtrunA17_Chr7g0269841 58.824 68 28 0 18 85 28 95 2.61e-17 82.8
Msa0182220 MtrunA17_Chr4g0010781 52.055 73 35 0 12 84 82 154 2.41e-16 80.5
Msa0182220 MtrunA17_Chr3g0087741 50.649 77 37 1 9 85 83 158 2.85e-16 80.5
Msa0182220 MtrunA17_Chr6g0478651 46.078 102 44 3 15 112 67 161 7.04e-16 79.3
Msa0182220 MtrunA17_Chr3g0123861 58.571 70 28 1 16 85 82 150 1.99e-15 77.8
Msa0182220 MtrunA17_Chr3g0088221 62.500 56 21 0 106 161 22 77 5.14e-15 70.1
Msa0182220 MtrunA17_Chr4g0006391 49.296 71 35 1 16 85 4 74 8.22e-15 75.1
Msa0182220 MtrunA17_Chr7g0271891 43.836 73 37 1 18 86 18 90 8.75e-15 72.0
Msa0182220 MtrunA17_Chr2g0282741 49.296 71 35 1 16 85 4 74 1.59e-14 74.3
Msa0182220 MtrunA17_Chr4g0040501 49.296 71 35 1 16 85 4 74 1.90e-14 74.3
Msa0182220 MtrunA17_Chr2g0282761 52.239 67 31 1 16 81 4 70 2.65e-14 73.6
Msa0182220 MtrunA17_Chr3g0138471 47.887 71 36 1 16 85 4 74 2.77e-14 73.6
Msa0182220 MtrunA17_Chr7g0258061 43.750 96 47 3 18 113 24 112 3.76e-14 72.4
Msa0182220 MtrunA17_Chr7g0263971 51.515 66 31 1 14 78 367 432 4.83e-14 73.6
Msa0182220 MtrunA17_Chr4g0021141 43.284 67 38 0 15 81 21 87 5.30e-14 68.9
Msa0182220 MtrunA17_Chr2g0328581 55.556 63 27 1 17 79 76 137 5.65e-14 70.5
Msa0182220 MtrunA17_Chr8g0334811 52.941 68 28 1 18 85 16 79 6.17e-14 73.2
Msa0182220 MtrunA17_Chr5g0399201 48.684 76 36 1 15 87 11 86 1.10e-13 72.8
Msa0182220 MtrunA17_Chr7g0242951 48.684 76 31 2 16 84 27 101 4.42e-13 70.9
Msa0182220 MtrunA17_Chr2g0324921 47.887 71 36 1 16 85 4 74 5.16e-13 69.7
Msa0182220 MtrunA17_Chr5g0427221 31.776 107 65 1 15 121 47 145 6.42e-13 65.9
Msa0182220 MtrunA17_Chr5g0393371 40.860 93 46 2 18 110 8 91 8.41e-13 69.7
Msa0182220 MtrunA17_Chr4g0061421 43.373 83 43 1 10 88 2 84 1.78e-12 69.3
Msa0182220 MtrunA17_Chr1g0173931 40.625 96 51 2 18 113 40 129 3.10e-12 67.0
Msa0182220 MtrunA17_Chr2g0333221 48.571 70 35 1 12 81 66 134 3.12e-12 68.2
Msa0182220 MtrunA17_Chr8g0344721 41.558 77 39 1 16 86 10 86 5.19e-12 65.5
Msa0182220 MtrunA17_Chr8g0352451 45.205 73 40 0 18 90 74 146 9.68e-12 66.2
Msa0182220 MtrunA17_Chr8g0371891 47.059 68 34 1 18 83 49 116 1.14e-11 62.4
Msa0182220 MtrunA17_Chr1g0159491 42.188 64 37 0 18 81 8 71 1.65e-11 60.1
Msa0182220 MtrunA17_Chr5g0426951 46.875 64 34 0 15 78 82 145 1.76e-11 65.9
Msa0182220 MtrunA17_Chr1g0206121 47.692 65 33 1 16 80 35 98 1.89e-11 64.7
Msa0182220 MtrunA17_Chr1g0159511 39.726 73 44 0 18 90 8 80 2.02e-11 65.1
Msa0182220 MtrunA17_Chr4g0044331 43.939 66 33 1 22 83 18 83 2.71e-11 61.6
Msa0182220 MtrunA17_Chr2g0295821 47.761 67 34 1 16 82 104 169 5.46e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0182220 AT1G68370.1 84.019 413 57 4 3 413 4 409 0.0 719
Msa0182220 AT1G24120.1 57.590 415 152 2 13 405 17 429 1.50e-177 502
Msa0182220 AT1G59980.1 52.618 401 179 3 14 412 21 412 5.67e-149 429
Msa0182220 AT1G59980.2 55.952 336 147 1 14 349 21 355 1.03e-137 398
Msa0182220 AT1G59980.3 51.117 358 164 3 57 412 1 349 7.29e-124 363
Msa0182220 AT3G62600.1 57.353 68 29 0 18 85 28 95 6.21e-16 79.0
Msa0182220 AT5G01390.3 51.389 72 34 1 16 86 4 75 8.06e-16 77.0
Msa0182220 AT5G01390.4 51.389 72 34 1 16 86 4 75 1.02e-15 76.6
Msa0182220 AT5G01390.2 51.389 72 34 1 16 86 4 75 1.40e-15 77.0
Msa0182220 AT2G20560.1 50.704 71 34 1 16 85 4 74 1.67e-15 77.8
Msa0182220 AT4G28480.2 50.704 71 34 1 16 85 4 74 1.78e-15 77.0
Msa0182220 AT5G01390.1 51.389 72 34 1 16 86 4 75 2.66e-15 77.0
Msa0182220 AT4G28480.1 50.704 71 34 1 16 85 4 74 2.92e-15 77.0
Msa0182220 AT3G08910.1 50.704 71 34 1 16 85 4 74 3.83e-15 76.3
Msa0182220 AT5G48030.1 50.667 75 37 0 15 89 93 167 5.21e-15 77.0
Msa0182220 AT2G22360.1 49.398 83 41 1 16 98 86 167 4.75e-14 73.9
Msa0182220 AT5G03160.1 51.515 66 31 1 14 78 368 433 5.23e-14 73.9
Msa0182220 AT1G74250.1 44.828 87 43 1 7 88 2 88 6.95e-14 73.9
Msa0182220 AT2G21510.3 46.575 73 39 0 18 90 8 80 6.98e-14 72.8
Msa0182220 AT2G21510.1 46.575 73 39 0 18 90 8 80 6.98e-14 72.8
Msa0182220 AT2G21510.2 46.575 73 39 0 18 90 8 80 7.06e-14 72.8
Msa0182220 AT2G21510.4 46.575 73 39 0 18 90 8 80 7.06e-14 72.8
Msa0182220 AT3G17830.1 49.315 73 36 1 16 88 63 134 8.08e-14 73.6
Msa0182220 AT5G16650.1 44.118 68 38 0 15 82 10 77 8.15e-14 68.6
Msa0182220 AT1G56300.1 44.286 70 35 1 13 78 10 79 8.32e-14 69.3
Msa0182220 AT2G21510.5 46.575 73 39 0 18 90 8 80 8.40e-14 72.4
Msa0182220 AT3G08970.1 54.412 68 30 1 16 83 27 93 9.16e-14 73.6
Msa0182220 AT3G08970.2 54.412 68 30 1 16 83 27 93 9.16e-14 73.6
Msa0182220 AT5G16650.2 44.776 67 37 0 15 81 10 76 1.11e-13 69.3
Msa0182220 AT1G56300.2 44.286 70 35 1 13 78 10 79 1.22e-13 67.8
Msa0182220 AT5G25530.2 46.479 71 37 1 16 85 4 74 1.45e-13 72.0
Msa0182220 AT4G39960.1 49.398 83 41 1 16 98 85 166 1.49e-13 72.4
Msa0182220 AT4G39960.2 49.398 83 41 1 16 98 85 166 1.49e-13 72.4
Msa0182220 AT1G80030.2 53.030 66 30 1 16 81 75 139 2.07e-13 72.4
Msa0182220 AT1G80030.3 53.030 66 30 1 16 81 75 139 2.07e-13 72.4
Msa0182220 AT1G80030.1 53.030 66 30 1 16 81 75 139 2.07e-13 72.4
Msa0182220 AT1G80030.4 53.030 66 30 1 16 81 75 139 2.30e-13 72.0
Msa0182220 AT1G71000.2 31.818 132 76 4 5 126 1 128 2.66e-13 68.2
Msa0182220 AT3G12170.1 40.625 96 51 2 18 113 13 102 3.33e-13 69.7
Msa0182220 AT5G06910.1 51.562 64 31 0 18 81 31 94 3.60e-13 70.1
Msa0182220 AT3G12170.2 40.625 96 51 2 18 113 49 138 5.05e-13 69.7
Msa0182220 AT2G41000.2 44.928 69 33 1 16 79 3 71 5.26e-13 68.2
Msa0182220 AT2G41000.1 44.928 69 33 1 16 79 3 71 1.07e-12 66.6
Msa0182220 AT4G39150.3 43.836 73 41 0 18 90 8 80 1.84e-12 68.6
Msa0182220 AT4G39150.1 43.836 73 41 0 18 90 8 80 1.84e-12 68.6
Msa0182220 AT4G39150.2 43.836 73 41 0 18 90 8 80 1.84e-12 68.6
Msa0182220 AT5G59610.2 50.000 66 32 1 14 79 71 135 1.98e-12 67.4
Msa0182220 AT1G59725.1 43.243 74 40 1 16 87 4 77 2.28e-12 68.2
Msa0182220 AT1G10350.1 42.254 71 40 1 16 85 4 74 2.50e-12 68.2
Msa0182220 AT1G21080.3 41.892 74 43 0 18 91 8 81 2.55e-12 68.6
Msa0182220 AT1G21080.1 41.892 74 43 0 18 91 8 81 2.60e-12 68.6
Msa0182220 AT5G59610.1 50.000 66 32 1 14 79 71 135 4.00e-12 66.6
Msa0182220 AT5G59610.4 50.000 66 32 1 14 79 71 135 4.00e-12 66.6
Msa0182220 AT5G59610.3 50.000 66 32 1 14 79 71 135 4.06e-12 66.6
Msa0182220 AT5G59610.5 50.000 66 32 1 14 79 71 135 4.06e-12 66.6
Msa0182220 AT2G33735.1 42.188 64 37 0 15 78 21 84 4.40e-12 63.2
Msa0182220 AT2G33735.2 42.188 64 37 0 15 78 21 84 4.40e-12 63.2
Msa0182220 AT1G28210.3 41.667 72 42 0 15 86 47 118 5.34e-12 67.4
Msa0182220 AT1G28210.1 41.667 72 42 0 15 86 47 118 5.55e-12 67.4
Msa0182220 AT1G28210.2 41.667 72 42 0 15 86 47 118 5.91e-12 67.4
Msa0182220 AT5G49060.2 49.254 67 33 1 16 82 99 164 1.67e-11 65.9
Msa0182220 AT5G49060.1 49.254 67 33 1 16 82 99 164 1.67e-11 65.9
Msa0182220 AT1G71000.1 39.286 84 43 2 5 84 1 80 1.78e-11 62.8
Msa0182220 AT1G76700.1 38.710 93 48 2 18 110 8 91 2.02e-11 65.9
Msa0182220 AT2G35720.1 41.758 91 46 3 1 87 2 89 2.59e-11 65.9
Msa0182220 AT5G25530.1 41.772 79 37 2 16 85 4 82 3.20e-11 64.7
Msa0182220 AT4G21180.2 44.776 67 35 2 16 81 19 84 5.09e-11 65.1
Msa0182220 AT4G21180.1 44.776 67 35 2 16 81 99 164 5.21e-11 65.1
Msa0182220 AT3G14200.1 35.052 97 60 1 5 98 1 97 7.37e-11 62.4

Find 129 sgRNAs with CRISPR-Local

Find 404 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACATATATTTGCCGTTTA+TGG 0.136662 1_4:+70617917 Msa0182220:CDS
GGAAGTTCTAGCAAAATTTC+TGG 0.196708 1_4:+70619026 Msa0182220:CDS
CAATGTTTGCAGCTTTATTC+AGG 0.268018 1_4:+70616014 Msa0182220:CDS
TTCCCCAGGGCTCTCACCTT+TGG 0.274890 1_4:-70619057 None:intergenic
AAAGCAGCCCGTGGATATAT+TGG 0.290376 1_4:+70619244 Msa0182220:three_prime_UTR
TCAGGCATTGGCACGCTATC+AGG 0.305387 1_4:+70618259 Msa0182220:intron
TTGAATAGTTCTGAAGCTTC+AGG 0.318305 1_4:-70615097 None:intergenic
TGGCCATCCCAATGCTGCTT+TGG 0.320422 1_4:-70613569 None:intergenic
TACCTCGGAATGTGTTTGTT+AGG 0.320607 1_4:-70613801 None:intergenic
GGATTGTTGGCATTCTTGTC+AGG 0.332047 1_4:-70615076 None:intergenic
AAAGAGAGGCTTCAGGTCTA+TGG 0.335119 1_4:+70614067 Msa0182220:exon
GAAATCGATTTATCTAATCT+TGG 0.354013 1_4:+70615980 Msa0182220:CDS
AAAGAAAGAAAGAAAGAAAC+AGG 0.355747 1_4:-70613753 None:intergenic
TTCAAGAACATTAGCCGAAA+TGG 0.367637 1_4:-70616145 None:intergenic
TTCTGAAGCTTCAGGATTGT+TGG 0.367958 1_4:-70615089 None:intergenic
CCCAATCAAGACTACCATTT+CGG 0.369384 1_4:+70616131 Msa0182220:CDS
TCTTCAACCTTGTGAAGTTT+CGG 0.371250 1_4:+70617880 Msa0182220:CDS
GCCGAAATGGTAGTCTTGAT+TGG 0.375333 1_4:-70616132 None:intergenic
AATTCAAGAACACAAGAAAC+TGG 0.387032 1_4:-70613700 None:intergenic
AGATGGAGGGTCAGATAGTA+AGG 0.390540 1_4:+70619079 Msa0182220:CDS
ATGGTTCAACCTCAATCTTA+AGG 0.396575 1_4:+70619121 Msa0182220:CDS
TGTGCCGCAAGGCTTGATAA+AGG 0.397229 1_4:-70619512 None:intergenic
TAAATTATTCAGACCATAAA+CGG 0.401187 1_4:-70617930 None:intergenic
CAACCTCAATCTTAAGGGCT+CGG 0.401801 1_4:+70619127 Msa0182220:CDS
TGGTTGGTTAATTTGTTCAT+TGG 0.402552 1_4:+70619321 Msa0182220:three_prime_UTR
GGGCTATGGTTTAGCATTGC+AGG 0.403402 1_4:+70616532 Msa0182220:CDS
TCGGAAAATTTGAGTCTCAT+TGG 0.405324 1_4:-70619403 None:intergenic
GGTTCCTCAAAGTTGTGAAC+TGG 0.407085 1_4:+70619301 Msa0182220:three_prime_UTR
TAAGGGTCACGTCGAATTGC+TGG 0.410479 1_4:-70614116 None:intergenic
AAGCAGCCCGTGGATATATT+GGG 0.418295 1_4:+70619245 Msa0182220:three_prime_UTR
ATTTCGAACAAGATGCAAAC+GGG 0.423149 1_4:+70616510 Msa0182220:CDS
ACCTCGGAATGTGTTTGTTA+GGG 0.430343 1_4:-70613800 None:intergenic
AAATCGATTTATCTAATCTT+GGG 0.433620 1_4:+70615981 Msa0182220:CDS
AACTGCACAAAGCAAATTCA+AGG 0.433774 1_4:+70616405 Msa0182220:CDS
AATGAGCAGCAAGCTGAGTC+CGG 0.438090 1_4:+70616361 Msa0182220:CDS
TTCCTGATCGGATGATTCCT+TGG 0.440358 1_4:-70614156 None:intergenic
AAGAACACAAGAAACTGGTT+TGG 0.445552 1_4:-70613695 None:intergenic
AACCTCAATCTTAAGGGCTC+GGG 0.448187 1_4:+70619128 Msa0182220:CDS
GTTCTTGAAGAAGCTTTGAA+TGG 0.448738 1_4:+70616159 Msa0182220:CDS
GGTGAGAGCCCTGGGGAAGA+TGG 0.452090 1_4:+70619062 Msa0182220:CDS
CCAACCAGTTCACAACTTTG+AGG 0.453631 1_4:-70619305 None:intergenic
CCGAAATGGTAGTCTTGATT+GGG 0.459457 1_4:-70616131 None:intergenic
TGGTTCAACCTCAATCTTAA+GGG 0.459920 1_4:+70619122 Msa0182220:CDS
TAAAGAGAAAGAGAGGCTTC+AGG 0.462041 1_4:+70614060 Msa0182220:five_prime_UTR
ACTGGCAAAGTGACATCTGC+TGG 0.462289 1_4:+70617674 Msa0182220:CDS
TCAGATAGTAAGGATAAATC+AGG 0.462722 1_4:+70619089 Msa0182220:CDS
GGTTTGGTTTCGCTAGAGTC+AGG 0.463214 1_4:-70613679 None:intergenic
TAATTAAACCAAAGCAGCAT+TGG 0.469609 1_4:+70613561 Msa0182220:five_prime_UTR
ATTCCAAAGGTGAGAGCCCT+GGG 0.470174 1_4:+70619054 Msa0182220:CDS
AATTAAACCAAAGCAGCATT+GGG 0.477522 1_4:+70613562 Msa0182220:five_prime_UTR
TTTATTTGGTAACAGCAAGC+TGG 0.478612 1_4:+70616104 Msa0182220:intron
TATACATTCAAAATGCTCAA+TGG 0.488983 1_4:-70613589 None:intergenic
TTCCAAGGAATCATCCGATC+AGG 0.491880 1_4:+70614154 Msa0182220:CDS
TCTGACCCTCCATCTTCCCC+AGG 0.494682 1_4:-70619071 None:intergenic
TGACAATGGTGAAGGTAGAA+TGG 0.495930 1_4:-70618962 None:intergenic
GTACGACAGTGCAGGATTTG+AGG 0.501253 1_4:+70615171 Msa0182220:CDS
AAGTTTGATCCCATGACTCA+TGG 0.502042 1_4:-70619221 None:intergenic
AACCCGAGCCCTTAAGATTG+AGG 0.504980 1_4:-70619130 None:intergenic
ACTGCCACTTCCACTAGTAC+TGG 0.506538 1_4:-70618991 None:intergenic
ATAAAGATAAAGAGAAAGAG+AGG 0.508670 1_4:+70614053 Msa0182220:five_prime_UTR
GATTCCAAAGGTGAGAGCCC+TGG 0.509111 1_4:+70619053 Msa0182220:CDS
TTATTTGGTAACAGCAAGCT+GGG 0.510014 1_4:+70616105 Msa0182220:intron
GATTGTTGGCATTCTTGTCA+GGG 0.511190 1_4:-70615075 None:intergenic
TGAGGATGCTACAAGGGAAT+CGG 0.513549 1_4:-70619422 None:intergenic
GAAACGCCTAAAACTTCGTA+AGG 0.514888 1_4:-70614134 None:intergenic
ACGGCAAATATATGTGTGCC+AGG 0.520233 1_4:-70617911 None:intergenic
GAAGTTTCGGAACTAAAGCC+TGG 0.523940 1_4:+70617893 Msa0182220:CDS
CAGGAAGATAGCGAGAAGAC+TGG 0.526539 1_4:+70617656 Msa0182220:intron
AAGGACGCCATCTCGCAACT+TGG 0.527310 1_4:+70613642 Msa0182220:five_prime_UTR
CAGGTCTATGGATCAAAAGA+TGG 0.537155 1_4:+70614079 Msa0182220:exon
AGAAGGCAGTACGACAGTGC+AGG 0.538322 1_4:+70615163 Msa0182220:CDS
ATGAGCAGCAAGCTGAGTCC+GGG 0.538924 1_4:+70616362 Msa0182220:CDS
AGGCTTGATAAAGGAAAAGA+AGG 0.539248 1_4:-70619503 None:intergenic
ACAGTCAGACCCCTTCCAAT+GGG 0.539807 1_4:+70616189 Msa0182220:CDS
TATTTCGAACAAGATGCAAA+CGG 0.540322 1_4:+70616509 Msa0182220:CDS
GGCACTTGATGCTGATAGCA+TGG 0.541278 1_4:+70615952 Msa0182220:intron
TGACAGATGTTCCCATTGGA+AGG 0.542282 1_4:-70616200 None:intergenic
CCAACCAGTACTAGTGGAAG+TGG 0.543516 1_4:+70618987 Msa0182220:CDS
CCACTTCCACTAGTACTGGT+TGG 0.543648 1_4:-70618987 None:intergenic
CCACTGACAGATGTTCCCAT+TGG 0.546382 1_4:-70616204 None:intergenic
TTGGTTTGTGATGCAGTCAA+AGG 0.547925 1_4:+70619340 Msa0182220:three_prime_UTR
TACAGTCAGACCCCTTCCAA+TGG 0.549746 1_4:+70616188 Msa0182220:CDS
CACTACACCCAATATATCCA+CGG 0.551627 1_4:-70619252 None:intergenic
GAGAGCCCTGGGGAAGATGG+AGG 0.552103 1_4:+70619065 Msa0182220:CDS
TAAGAAAGAGGAATGAGCTA+CGG 0.559189 1_4:+70618136 Msa0182220:CDS
ATTCGAATCAGAATATAGAA+AGG 0.559792 1_4:+70618161 Msa0182220:CDS
AGTGGCAGTAATTTAAGCAA+TGG 0.561362 1_4:+70619005 Msa0182220:CDS
AGAGCCCTGGGGAAGATGGA+GGG 0.564660 1_4:+70619066 Msa0182220:CDS
AGCTTCAGAACTATTCAAAG+AGG 0.565165 1_4:+70615102 Msa0182220:CDS
TAGATGAGCTTCTGAAGCAA+AGG 0.568314 1_4:+70618931 Msa0182220:CDS
GACAGATGTTCCCATTGGAA+GGG 0.577219 1_4:-70616199 None:intergenic
CCTCAAAGTTGTGAACTGGT+TGG 0.577735 1_4:+70619305 Msa0182220:three_prime_UTR
AGATGAGCTTCTGAAGCAAA+GGG 0.578480 1_4:+70618932 Msa0182220:CDS
ACAGATGTTCCCATTGGAAG+GGG 0.585092 1_4:-70616198 None:intergenic
GTCAAGCCAACCAGTACTAG+TGG 0.588616 1_4:+70618981 Msa0182220:CDS
GCTTTCTTTAAAAGGTTGGA+AGG 0.589624 1_4:+70617857 Msa0182220:CDS
AGTAACTCTTACTACAATCC+CGG 0.591228 1_4:-70616380 None:intergenic
TATATGTTGAGGATGCTACA+AGG 0.593654 1_4:-70619429 None:intergenic
GGGAACATCTGTCAGTGGAA+AGG 0.595107 1_4:+70616209 Msa0182220:CDS
AAACCAAAGCAGCATTGGGA+TGG 0.595402 1_4:+70613566 Msa0182220:five_prime_UTR
CTGACCCTCCATCTTCCCCA+GGG 0.596536 1_4:-70619070 None:intergenic
TCCCTAACAAACACATTCCG+AGG 0.601621 1_4:+70613799 Msa0182220:five_prime_UTR
TCTATGGATCAAAAGATGGA+AGG 0.606940 1_4:+70614083 Msa0182220:exon
GCTTGAGTGACCATGAGTCA+TGG 0.607603 1_4:+70619211 Msa0182220:three_prime_UTR
TGTAAGACCAAGTTGCGAGA+TGG 0.610392 1_4:-70613649 None:intergenic
CTTGAGTGACCATGAGTCAT+GGG 0.611648 1_4:+70619212 Msa0182220:three_prime_UTR
TATCTGACCCAGAAAAGAGA+AGG 0.614795 1_4:+70615146 Msa0182220:CDS
ACTACACCCAATATATCCAC+GGG 0.622246 1_4:-70619251 None:intergenic
TGTTGTGGTGCAGTTAGCGA+TGG 0.622724 1_4:+70617817 Msa0182220:intron
AGCGATGGCCAAGGATCCTG+AGG 0.626922 1_4:+70617832 Msa0182220:CDS
GCGATGGCCAAGGATCCTGA+GGG 0.627814 1_4:+70617833 Msa0182220:CDS
GGTGCAGTTAGCGATGGCCA+AGG 0.631797 1_4:+70617823 Msa0182220:intron
ATTTCTGGTGAAGATTCCAA+AGG 0.636229 1_4:+70619041 Msa0182220:CDS
AATGGATTCAACTGTGAATG+CGG 0.640290 1_4:+70617727 Msa0182220:CDS
ATATGTTGAGGATGCTACAA+GGG 0.642836 1_4:-70619428 None:intergenic
TGATGCTGATAGCATGGACA+TGG 0.647234 1_4:+70615958 Msa0182220:CDS
ATCAAACTTAAAGCAGCCCG+TGG 0.648796 1_4:+70619235 Msa0182220:three_prime_UTR
TTTAGTTCCGAAACTTCACA+AGG 0.659450 1_4:-70617887 None:intergenic
TTTCGAACAAGATGCAAACG+GGG 0.666223 1_4:+70616511 Msa0182220:CDS
GATGGCCAAGGATCCTGAGG+GGG 0.667249 1_4:+70617835 Msa0182220:CDS
GAGCTTCTGAAGCAAAGGGA+CGG 0.671749 1_4:+70618936 Msa0182220:CDS
CCAATGGGAACATCTGTCAG+TGG 0.675083 1_4:+70616204 Msa0182220:CDS
AGTACTGGTTGGCTTGACAA+TGG 0.678755 1_4:-70618976 None:intergenic
AAACGCCTAAAACTTCGTAA+GGG 0.680076 1_4:-70614133 None:intergenic
TTTCTATTCGAACAACAACA+CGG 0.688474 1_4:-70614029 None:intergenic
GGTTGGCTTGACAATGGTGA+AGG 0.708781 1_4:-70618970 None:intergenic
TTCGAACAAGATGCAAACGG+GGG 0.711604 1_4:+70616512 Msa0182220:CDS
CGATGGCCAAGGATCCTGAG+GGG 0.716333 1_4:+70617834 Msa0182220:CDS
TTCCAAAGGTGAGAGCCCTG+GGG 0.764572 1_4:+70619055 Msa0182220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATTTATTTAGTCAAAAT+TGG + chr1_4:70615550-70615569 Msa0182220:intron 10.0%
!! AAAGTTACATATTAATTAAA+AGG - chr1_4:70615908-70615927 None:intergenic 10.0%
!!! AATTTAATACCAATATATTT+TGG - chr1_4:70616893-70616912 None:intergenic 10.0%
!! TAATAATCGAATTCAAAAAA+GGG - chr1_4:70613874-70613893 None:intergenic 15.0%
!! AAAAAAGCAAAAAAAAAATG+AGG - chr1_4:70614244-70614263 None:intergenic 15.0%
!! TTATAAAAAACTGAATCTTT+AGG - chr1_4:70614440-70614459 None:intergenic 15.0%
!! AATAAATATAATATTTGACG+TGG - chr1_4:70615540-70615559 None:intergenic 15.0%
!!! ATAGTTTGCTTTTTATATAT+CGG + chr1_4:70615773-70615792 Msa0182220:intron 15.0%
!!! TGGTTTGTTTTTTTATATAT+CGG + chr1_4:70615821-70615840 Msa0182220:intron 15.0%
!! AATGAGATAATATATTGTTA+AGG + chr1_4:70616703-70616722 Msa0182220:intron 15.0%
!! ATGAGATAATATATTGTTAA+GGG + chr1_4:70616704-70616723 Msa0182220:intron 15.0%
!!! TTAATAGTCATTTCAATTTT+TGG - chr1_4:70617092-70617111 None:intergenic 15.0%
!!! AATTTGAGATATAAGTTAAT+GGG - chr1_4:70617182-70617201 None:intergenic 15.0%
!! TATCAAAAATATATATGTTG+AGG - chr1_4:70619443-70619462 None:intergenic 15.0%
!! GTAATAATCGAATTCAAAAA+AGG - chr1_4:70613875-70613894 None:intergenic 20.0%
!! CATAGTAATTTGAATTACAA+AGG - chr1_4:70614488-70614507 None:intergenic 20.0%
!! TAATTCAAATTACTATGTCT+GGG + chr1_4:70614491-70614510 Msa0182220:intron 20.0%
!!! AAAAATTTAGAATCTTGTCA+GGG - chr1_4:70614598-70614617 None:intergenic 20.0%
!! TTAAGGTTATGACTTAAAAT+TGG + chr1_4:70614686-70614705 Msa0182220:intron 20.0%
!! TAAGGTTATGACTTAAAATT+GGG + chr1_4:70614687-70614706 Msa0182220:intron 20.0%
!! AAATACTATAGATTAGTGTT+TGG + chr1_4:70614824-70614843 Msa0182220:intron 20.0%
!! AATACTATAGATTAGTGTTT+GGG + chr1_4:70614825-70614844 Msa0182220:intron 20.0%
!! ATAAATTGTTTAAACTGTGT+AGG + chr1_4:70614932-70614951 Msa0182220:intron 20.0%
!!! TATAATTTTTTCCCTTTTCT+GGG + chr1_4:70615362-70615381 Msa0182220:intron 20.0%
!! AAAAACAGTACATATGTATA+AGG - chr1_4:70615623-70615642 None:intergenic 20.0%
!! ATAGTAATCTATGAAAAGAT+AGG - chr1_4:70615656-70615675 None:intergenic 20.0%
!!! AAATCGATTTATCTAATCTT+GGG + chr1_4:70615981-70616000 Msa0182220:CDS 20.0%
!! TCAAAAGTAACAAAGTTTAT+TGG + chr1_4:70616754-70616773 Msa0182220:intron 20.0%
!!! GTTGATTTACCAAAATATAT+TGG + chr1_4:70616881-70616900 Msa0182220:intron 20.0%
!! GACTATTAACTTTATATTAC+TGG + chr1_4:70617103-70617122 Msa0182220:intron 20.0%
!!! GAATTTGAGATATAAGTTAA+TGG - chr1_4:70617183-70617202 None:intergenic 20.0%
!!! ATCTATGAATCAATTTTGAA+TGG - chr1_4:70617551-70617570 None:intergenic 20.0%
!! TAAATTATTCAGACCATAAA+CGG - chr1_4:70617933-70617952 None:intergenic 20.0%
!! CAATTATCAGAATTTAATAG+AGG + chr1_4:70618555-70618574 Msa0182220:intron 20.0%
!!! TAATTTGTCTGTTATTTTTC+TGG + chr1_4:70618899-70618918 Msa0182220:intron 20.0%
! TATACATTCAAAATGCTCAA+TGG - chr1_4:70613592-70613611 None:intergenic 25.0%
! AAAGAAAGAAAGAAAGAAAC+AGG - chr1_4:70613756-70613775 None:intergenic 25.0%
! AAAAAGGGAAAAGAGATTAT+GGG - chr1_4:70613859-70613878 None:intergenic 25.0%
! AAAAAAGGGAAAAGAGATTA+TGG - chr1_4:70613860-70613879 None:intergenic 25.0%
! AATTGAACAAACCACTTATT+AGG + chr1_4:70613910-70613929 Msa0182220:intron 25.0%
! ATAAAGATAAAGAGAAAGAG+AGG + chr1_4:70614053-70614072 Msa0182220:five_prime_UTR 25.0%
! TTAGGAAACATAAAGACTAA+AGG - chr1_4:70614422-70614441 None:intergenic 25.0%
! GTAATTCAAATTACTATGTC+TGG + chr1_4:70614490-70614509 Msa0182220:intron 25.0%
!! AAAATTTAGAATCTTGTCAG+GGG - chr1_4:70614597-70614616 None:intergenic 25.0%
!! CAAAAATTTAGAATCTTGTC+AGG - chr1_4:70614599-70614618 None:intergenic 25.0%
!! GTGAAAAAACACTCATTTTA+AGG + chr1_4:70614669-70614688 Msa0182220:intron 25.0%
! TCATAACCATTCAAATTGAA+GGG - chr1_4:70614769-70614788 None:intergenic 25.0%
!!! AAAACAAAAGTTTTGGCTAA+TGG + chr1_4:70615276-70615295 Msa0182220:intron 25.0%
!!! CTATAATTTTTTCCCTTTTC+TGG + chr1_4:70615361-70615380 Msa0182220:intron 25.0%
!!! ATAATTTTTTCCCTTTTCTG+GGG + chr1_4:70615363-70615382 Msa0182220:intron 25.0%
! AAAACATGAGTCATTTGTTT+CGG + chr1_4:70615591-70615610 Msa0182220:intron 25.0%
! TTCATAGATTACTATCCTTT+CGG + chr1_4:70615661-70615680 Msa0182220:intron 25.0%
!! GAAATCGATTTATCTAATCT+TGG + chr1_4:70615980-70615999 Msa0182220:CDS 25.0%
!! GCATTGTTTCTTACTTTATT+TGG + chr1_4:70616090-70616109 Msa0182220:intron 25.0%
! TTGTTCTTATTCCACTTATA+TGG + chr1_4:70616286-70616305 Msa0182220:intron 25.0%
! TACAAAAGCAACACTTAAAA+AGG - chr1_4:70616578-70616597 None:intergenic 25.0%
! ACTTTGACAACAACAAATAA+GGG - chr1_4:70616612-70616631 None:intergenic 25.0%
! AACTTTGACAACAACAAATA+AGG - chr1_4:70616613-70616632 None:intergenic 25.0%
! TCTCTGCAATAAATACTTAA+GGG - chr1_4:70616670-70616689 None:intergenic 25.0%
! ATCTCTGCAATAAATACTTA+AGG - chr1_4:70616671-70616690 None:intergenic 25.0%
!!! ACAAAGTTTATTGGTTTTCT+TGG + chr1_4:70616763-70616782 Msa0182220:intron 25.0%
! CATAAAACAGACAACTAAAA+AGG + chr1_4:70616800-70616819 Msa0182220:intron 25.0%
! GCATAATATTAGTAAACACT+AGG + chr1_4:70617252-70617271 Msa0182220:intron 25.0%
! TTTATCCAGATGATAAAAAC+AGG - chr1_4:70617387-70617406 None:intergenic 25.0%
!!! AAGTTTGAAGGAATTGATTT+TGG - chr1_4:70617412-70617431 None:intergenic 25.0%
! GTATGGATATTATGTCTATT+TGG + chr1_4:70617749-70617768 Msa0182220:intron 25.0%
!!! TGTTTTTTTTTTTGCTTGCT+TGG + chr1_4:70617964-70617983 Msa0182220:intron 25.0%
!!! GTTTTTTTTTTTGCTTGCTT+GGG + chr1_4:70617965-70617984 Msa0182220:intron 25.0%
!!! AATTCGAGTTGATATTGTTT+AGG + chr1_4:70618012-70618031 Msa0182220:intron 25.0%
! ATTCGAATCAGAATATAGAA+AGG + chr1_4:70618161-70618180 Msa0182220:CDS 25.0%
! TCAGAATTTAATAGAGGAAA+AGG + chr1_4:70618561-70618580 Msa0182220:intron 25.0%
! ATAAATCAGGCAAAAAGAAA+TGG + chr1_4:70619102-70619121 Msa0182220:CDS 25.0%
! TCTCATTGGACAAAAAATAT+AGG - chr1_4:70619392-70619411 None:intergenic 25.0%
TAATTAAACCAAAGCAGCAT+TGG + chr1_4:70613561-70613580 Msa0182220:five_prime_UTR 30.0%
AATTAAACCAAAGCAGCATT+GGG + chr1_4:70613562-70613581 Msa0182220:five_prime_UTR 30.0%
AATTCAAGAACACAAGAAAC+TGG - chr1_4:70613703-70613722 None:intergenic 30.0%
GTATTGTTTGACCTAATAAG+TGG - chr1_4:70613924-70613943 None:intergenic 30.0%
!!! GTAGAATTGAGCTTTTTTGA+GGG - chr1_4:70613984-70614003 None:intergenic 30.0%
AGTAGCTGTTGAATGAAAAA+AGG - chr1_4:70614006-70614025 None:intergenic 30.0%
TTTCTATTCGAACAACAACA+CGG - chr1_4:70614032-70614051 None:intergenic 30.0%
ATGAGGTAGAAAGTGAAAAA+GGG - chr1_4:70614227-70614246 None:intergenic 30.0%
AATGAGGTAGAAAGTGAAAA+AGG - chr1_4:70614228-70614247 None:intergenic 30.0%
! TTGATGACCTTCAAAATCTA+GGG - chr1_4:70614356-70614375 None:intergenic 30.0%
GAAACATAAAGACTAAAGGT+TGG - chr1_4:70614418-70614437 None:intergenic 30.0%
! ACAGGTTAATTAGGATTTTG+GGG - chr1_4:70614642-70614661 None:intergenic 30.0%
! GACAGGTTAATTAGGATTTT+GGG - chr1_4:70614643-70614662 None:intergenic 30.0%
!!! ATGAGTGTTTTTTCACGTTT+TGG - chr1_4:70614665-70614684 None:intergenic 30.0%
GTCATAACCATTCAAATTGA+AGG - chr1_4:70614770-70614789 None:intergenic 30.0%
! AATGGTTATGACTTTTGCTT+GGG + chr1_4:70614778-70614797 Msa0182220:intron 30.0%
CTGATCTCTATATAATTGAC+AGG + chr1_4:70615047-70615066 Msa0182220:intron 30.0%
! CAGCATGAAAACAAAAGTTT+TGG + chr1_4:70615269-70615288 Msa0182220:intron 30.0%
ATTTACCAAGTTATCTAGCT+TGG + chr1_4:70615308-70615327 Msa0182220:intron 30.0%
ATAGAAGTAAGATGTCAAGA+TGG - chr1_4:70615395-70615414 None:intergenic 30.0%
TTGACATCTTACTTCTATGA+TGG + chr1_4:70615397-70615416 Msa0182220:intron 30.0%
TAATCTATGAAAAGATAGGC+AGG - chr1_4:70615652-70615671 None:intergenic 30.0%
ATTAAAAGGAGAGTTGTATC+AGG - chr1_4:70615894-70615913 None:intergenic 30.0%
! CTATTTTGCCTATGTATATC+AGG + chr1_4:70615931-70615950 Msa0182220:intron 30.0%
AAGCAATGCAATAATCTTCT+TGG + chr1_4:70616256-70616275 Msa0182220:intron 30.0%
!!! AAGCAATGTGCTCATTTTTT+TGG + chr1_4:70616328-70616347 Msa0182220:CDS 30.0%
!!! TGCCTTTTTTACAATGATTC+CGG + chr1_4:70616437-70616456 Msa0182220:intron 30.0%
TATTTCGAACAAGATGCAAA+CGG + chr1_4:70616509-70616528 Msa0182220:CDS 30.0%
AACACTTAAAAAGGAACGTA+GGG - chr1_4:70616569-70616588 None:intergenic 30.0%
AACAGACAACTAAAAAGGAA+TGG + chr1_4:70616805-70616824 Msa0182220:intron 30.0%
GATATCACAGAAACTCTAAT+AGG + chr1_4:70616989-70617008 Msa0182220:intron 30.0%
TGAATGATGATTAATCTCAC+AGG + chr1_4:70617041-70617060 Msa0182220:intron 30.0%
!! GTCATTTCAATTTTTGGAAG+AGG - chr1_4:70617086-70617105 None:intergenic 30.0%
TGATAAAAACAGGAAACACA+AGG - chr1_4:70617377-70617396 None:intergenic 30.0%
!!! TGTTTCCTGTTTTTATCATC+TGG + chr1_4:70617379-70617398 Msa0182220:intron 30.0%
CACAAGATTTGAAAGTTTGA+AGG - chr1_4:70617424-70617443 None:intergenic 30.0%
! GTGAAACACATTTTATCATC+TGG + chr1_4:70617441-70617460 Msa0182220:intron 30.0%
AGTAGTTGTGCAATTACAAT+TGG + chr1_4:70617600-70617619 Msa0182220:intron 30.0%
!!! ACATTTTCAAGTGTACAGAA+TGG + chr1_4:70617709-70617728 Msa0182220:CDS 30.0%
! TTGGTTTCTTTTCTTTGTTG+CGG + chr1_4:70617768-70617787 Msa0182220:intron 30.0%
! ACACATATATTTGCCGTTTA+TGG + chr1_4:70617917-70617936 Msa0182220:CDS 30.0%
! CTCAATATCCTGAAGTTTTT+GGG - chr1_4:70618106-70618125 None:intergenic 30.0%
!! AGGCTCAAATTTTAAGAAAG+AGG + chr1_4:70618124-70618143 Msa0182220:CDS 30.0%
!!! ATTGCTTGAAGTTTGTTTTG+TGG + chr1_4:70618206-70618225 Msa0182220:intron 30.0%
TTCAGAAAAGGATCACATTA+AGG - chr1_4:70618233-70618252 None:intergenic 30.0%
TTTATAACTGTAGCATGTGT+TGG - chr1_4:70618330-70618349 None:intergenic 30.0%
GCATATAAAAGACCAAAACA+AGG - chr1_4:70618621-70618640 None:intergenic 30.0%
AAACAGGACATATTGAAAAC+AGG - chr1_4:70618708-70618727 None:intergenic 30.0%
!! CGTTTTGATATAATTTACCC+TGG + chr1_4:70618816-70618835 Msa0182220:intron 30.0%
ATTAAATGTGTTCTGCTCTT+CGG + chr1_4:70618846-70618865 Msa0182220:intron 30.0%
TCAGATAGTAAGGATAAATC+AGG + chr1_4:70619089-70619108 Msa0182220:CDS 30.0%
! CTACAATGTTTTCATTTGCT+TGG + chr1_4:70619280-70619299 Msa0182220:three_prime_UTR 30.0%
!! TGGTTGGTTAATTTGTTCAT+TGG + chr1_4:70619321-70619340 Msa0182220:three_prime_UTR 30.0%
AAGAACACAAGAAACTGGTT+TGG - chr1_4:70613698-70613717 None:intergenic 35.0%
CTACTGCTATTACTATGACA+TGG - chr1_4:70613951-70613970 None:intergenic 35.0%
!!! TTGAGCTTTTTTGAGGGTTT+GGG - chr1_4:70613978-70613997 None:intergenic 35.0%
!!! ATTGAGCTTTTTTGAGGGTT+TGG - chr1_4:70613979-70613998 None:intergenic 35.0%
!!! GGTAGAATTGAGCTTTTTTG+AGG - chr1_4:70613985-70614004 None:intergenic 35.0%
TCTATGGATCAAAAGATGGA+AGG + chr1_4:70614083-70614102 Msa0182220:exon 35.0%
AAACGCCTAAAACTTCGTAA+GGG - chr1_4:70614136-70614155 None:intergenic 35.0%
!!! AGCGGTTTTAATTTCCTGAT+CGG - chr1_4:70614171-70614190 None:intergenic 35.0%
! TGTAGAACCCTAGATTTTGA+AGG + chr1_4:70614346-70614365 Msa0182220:intron 35.0%
!! GTTGATGACCTTCAAAATCT+AGG - chr1_4:70614357-70614376 None:intergenic 35.0%
TTGCACTCAACAGAAACTTT+AGG + chr1_4:70614531-70614550 Msa0182220:intron 35.0%
CAGCATAATCGAATTACCTA+AGG + chr1_4:70614568-70614587 Msa0182220:intron 35.0%
! GGACAGGTTAATTAGGATTT+TGG - chr1_4:70614644-70614663 None:intergenic 35.0%
!! ACGTTTTGGACAGGTTAATT+AGG - chr1_4:70614651-70614670 None:intergenic 35.0%
!!! TGTTTTTTCACGTTTTGGAC+AGG - chr1_4:70614660-70614679 None:intergenic 35.0%
GCTTTCTTAAACTCATTCCA+AGG - chr1_4:70614747-70614766 None:intergenic 35.0%
AGAAAGCCCTTCAATTTGAA+TGG + chr1_4:70614760-70614779 Msa0182220:intron 35.0%
! GAATGGTTATGACTTTTGCT+TGG + chr1_4:70614777-70614796 Msa0182220:intron 35.0%
! ATGGTTATGACTTTTGCTTG+GGG + chr1_4:70614779-70614798 Msa0182220:intron 35.0%
ACTAGCTATGACTAATCAGA+GGG - chr1_4:70614891-70614910 None:intergenic 35.0%
AACTAGCTATGACTAATCAG+AGG - chr1_4:70614892-70614911 None:intergenic 35.0%
! TATCTCGCTATAGCTTTTCT+AGG + chr1_4:70614987-70615006 Msa0182220:intron 35.0%
! ATCTCGCTATAGCTTTTCTA+GGG + chr1_4:70614988-70615007 Msa0182220:intron 35.0%
GAGATCAGTGTTATCAATTG+TGG - chr1_4:70615035-70615054 None:intergenic 35.0%
!! TTGAATAGTTCTGAAGCTTC+AGG - chr1_4:70615100-70615119 None:intergenic 35.0%
AGCTTCAGAACTATTCAAAG+AGG + chr1_4:70615102-70615121 Msa0182220:CDS 35.0%
ATCGAAGAAAAGAAGAGCTT+TGG - chr1_4:70615227-70615246 None:intergenic 35.0%
! TGTTTTCATGCTGCTGAAAA+GGG - chr1_4:70615262-70615281 None:intergenic 35.0%
! TTGTTTTCATGCTGCTGAAA+AGG - chr1_4:70615263-70615282 None:intergenic 35.0%
!!! AAAGTTTTGGCTAATGGCAT+AGG + chr1_4:70615282-70615301 Msa0182220:intron 35.0%
! GTTTTCCAAGCTAGATAACT+TGG - chr1_4:70615316-70615335 None:intergenic 35.0%
AAAGCATAAGAAAAGCTTGC+AGG - chr1_4:70615435-70615454 None:intergenic 35.0%
ACATATACATCTCAGAAGAG+AGG + chr1_4:70615457-70615476 Msa0182220:intron 35.0%
AAATGCATGAATTGACCGAA+AGG - chr1_4:70615679-70615698 None:intergenic 35.0%
GCTGCTTGCATTAATGTAAA+TGG + chr1_4:70615754-70615773 Msa0182220:intron 35.0%
ATCAAGTGCCTGATATACAT+AGG - chr1_4:70615942-70615961 None:intergenic 35.0%
!! CAATGTTTGCAGCTTTATTC+AGG + chr1_4:70616014-70616033 Msa0182220:CDS 35.0%
! TTTATTTGGTAACAGCAAGC+TGG + chr1_4:70616104-70616123 Msa0182220:intron 35.0%
! TTATTTGGTAACAGCAAGCT+GGG + chr1_4:70616105-70616124 Msa0182220:intron 35.0%
TTCAAGAACATTAGCCGAAA+TGG - chr1_4:70616148-70616167 None:intergenic 35.0%
!! GTTCTTGAAGAAGCTTTGAA+TGG + chr1_4:70616159-70616178 Msa0182220:CDS 35.0%
GCAACAAATTGCCATATAAG+TGG - chr1_4:70616300-70616319 None:intergenic 35.0%
!! CTTATATGGCAATTTGTTGC+AGG + chr1_4:70616300-70616319 Msa0182220:intron 35.0%
AGTAACTCTTACTACAATCC+CGG - chr1_4:70616383-70616402 None:intergenic 35.0%
AACTGCACAAAGCAAATTCA+AGG + chr1_4:70616405-70616424 Msa0182220:CDS 35.0%
AGCCGGAATCATTGTAAAAA+AGG - chr1_4:70616442-70616461 None:intergenic 35.0%
TACAATGATTCCGGCTAATA+TGG + chr1_4:70616446-70616465 Msa0182220:intron 35.0%
CAGATTGTAATATTGAACGC+TGG + chr1_4:70616472-70616491 Msa0182220:intron 35.0%
ATTTCGAACAAGATGCAAAC+GGG + chr1_4:70616510-70616529 Msa0182220:CDS 35.0%
CAACACTTAAAAAGGAACGT+AGG - chr1_4:70616570-70616589 None:intergenic 35.0%
AGACAACTAAAAAGGAATGG+AGG + chr1_4:70616808-70616827 Msa0182220:intron 35.0%
GACAACTAAAAAGGAATGGA+GGG + chr1_4:70616809-70616828 Msa0182220:intron 35.0%
TGGTAAATCAACAAGTCGAA+GGG - chr1_4:70616873-70616892 None:intergenic 35.0%
TTGGTAAATCAACAAGTCGA+AGG - chr1_4:70616874-70616893 None:intergenic 35.0%
TTTGGAAGAGGTAAAACCAT+GGG - chr1_4:70617074-70617093 None:intergenic 35.0%
!! TTTTGGAAGAGGTAAAACCA+TGG - chr1_4:70617075-70617094 None:intergenic 35.0%
TAAAAGGGAAATGGAGATGA+GGG - chr1_4:70617219-70617238 None:intergenic 35.0%
AGACACAAGTAAAAGGGAAA+TGG - chr1_4:70617228-70617247 None:intergenic 35.0%
GCTACAAGACACAAGTAAAA+GGG - chr1_4:70617234-70617253 None:intergenic 35.0%
TGCTACAAGACACAAGTAAA+AGG - chr1_4:70617235-70617254 None:intergenic 35.0%
TAAATAACAATCCTTGCACG+TGG + chr1_4:70617278-70617297 Msa0182220:intron 35.0%
TAAAAATACAACCACGTGCA+AGG - chr1_4:70617292-70617311 None:intergenic 35.0%
CATAACAGCACGAATTTCTA+TGG + chr1_4:70617330-70617349 Msa0182220:intron 35.0%
GTCTATGCAATTGTCTATAC+AGG + chr1_4:70617637-70617656 Msa0182220:intron 35.0%
! AATGGATTCAACTGTGAATG+CGG + chr1_4:70617727-70617746 Msa0182220:CDS 35.0%
! TGGTTTCTTTTCTTTGTTGC+GGG + chr1_4:70617769-70617788 Msa0182220:intron 35.0%
! GCTTTCTTTAAAAGGTTGGA+AGG + chr1_4:70617857-70617876 Msa0182220:CDS 35.0%
TCTTCAACCTTGTGAAGTTT+CGG + chr1_4:70617880-70617899 Msa0182220:CDS 35.0%
! TTTAGTTCCGAAACTTCACA+AGG - chr1_4:70617890-70617909 None:intergenic 35.0%
!! AATATCCTGAAGTTTTTGGG+TGG - chr1_4:70618103-70618122 None:intergenic 35.0%
! CCTCAATATCCTGAAGTTTT+TGG - chr1_4:70618107-70618126 None:intergenic 35.0%
CCAAAAACTTCAGGATATTG+AGG + chr1_4:70618104-70618123 Msa0182220:CDS 35.0%
TAAGAAAGAGGAATGAGCTA+CGG + chr1_4:70618136-70618155 Msa0182220:CDS 35.0%
! TCCTTTTCTGAATACGTTTC+AGG + chr1_4:70618241-70618260 Msa0182220:intron 35.0%
! AAACAAGGATAAGCATCGTA+TGG - chr1_4:70618606-70618625 None:intergenic 35.0%
!! TACGATGCTTATCCTTGTTT+TGG + chr1_4:70618606-70618625 Msa0182220:intron 35.0%
CACATTTAATAGTAGTGCCA+GGG - chr1_4:70618836-70618855 None:intergenic 35.0%
ACACATTTAATAGTAGTGCC+AGG - chr1_4:70618837-70618856 None:intergenic 35.0%
!!! TGTTATTTTTCTGGTTACCC+AGG + chr1_4:70618908-70618927 Msa0182220:intron 35.0%
AGTGGCAGTAATTTAAGCAA+TGG + chr1_4:70619005-70619024 Msa0182220:CDS 35.0%
! GGAAGTTCTAGCAAAATTTC+TGG + chr1_4:70619026-70619045 Msa0182220:CDS 35.0%
!! ATTTCTGGTGAAGATTCCAA+AGG + chr1_4:70619041-70619060 Msa0182220:CDS 35.0%
ATGGTTCAACCTCAATCTTA+AGG + chr1_4:70619121-70619140 Msa0182220:CDS 35.0%
TGGTTCAACCTCAATCTTAA+GGG + chr1_4:70619122-70619141 Msa0182220:CDS 35.0%
TCGGAAAATTTGAGTCTCAT+TGG - chr1_4:70619406-70619425 None:intergenic 35.0%
ATATGTTGAGGATGCTACAA+GGG - chr1_4:70619431-70619450 None:intergenic 35.0%
TATATGTTGAGGATGCTACA+AGG - chr1_4:70619432-70619451 None:intergenic 35.0%
AGGCTTGATAAAGGAAAAGA+AGG - chr1_4:70619506-70619525 None:intergenic 35.0%
! TTTTCCTTTATCAAGCCTTG+CGG + chr1_4:70619508-70619527 Msa0182220:three_prime_UTR 35.0%
! TAGTAATATTTTGTGCCGCA+AGG - chr1_4:70619526-70619545 None:intergenic 35.0%
! ACCTCGGAATGTGTTTGTTA+GGG - chr1_4:70613803-70613822 None:intergenic 40.0%
TACCTCGGAATGTGTTTGTT+AGG - chr1_4:70613804-70613823 None:intergenic 40.0%
! GATTCAAAGTGGCATTGGAT+CGG - chr1_4:70613828-70613847 None:intergenic 40.0%
AAGGGAAAAGAGATTATGGG+TGG - chr1_4:70613856-70613875 None:intergenic 40.0%
TAAAGAGAAAGAGAGGCTTC+AGG + chr1_4:70614060-70614079 Msa0182220:five_prime_UTR 40.0%
CAGGTCTATGGATCAAAAGA+TGG + chr1_4:70614079-70614098 Msa0182220:exon 40.0%
GAAACGCCTAAAACTTCGTA+AGG - chr1_4:70614137-70614156 None:intergenic 40.0%
! GAGAGCAAGTTTTCTGTAAG+CGG - chr1_4:70614189-70614208 None:intergenic 40.0%
GGGTTCTACAGTTGTACTAA+TGG - chr1_4:70614336-70614355 None:intergenic 40.0%
!! ACTAAAGGTTGGTGCCTTTA+GGG - chr1_4:70614407-70614426 None:intergenic 40.0%
GGGTTGTGATGATTTGAATG+AGG - chr1_4:70614622-70614641 None:intergenic 40.0%
AATCAGAGGGTGAAAACTGA+TGG - chr1_4:70614878-70614897 None:intergenic 40.0%
GAAAAGCTATAGCGAGATAG+CGG - chr1_4:70614986-70615005 None:intergenic 40.0%
GATTGTTGGCATTCTTGTCA+GGG - chr1_4:70615078-70615097 None:intergenic 40.0%
!! TTCTGAAGCTTCAGGATTGT+TGG - chr1_4:70615092-70615111 None:intergenic 40.0%
TATCTGACCCAGAAAAGAGA+AGG + chr1_4:70615146-70615165 Msa0182220:CDS 40.0%
TGGATTCACATGGAAAGAAG+AGG - chr1_4:70615207-70615226 None:intergenic 40.0%
!! AGAAGAGCTTTGGATTCACA+TGG - chr1_4:70615217-70615236 None:intergenic 40.0%
CACTCAAATTCCAAGTTGCA+GGG - chr1_4:70615505-70615524 None:intergenic 40.0%
TCACTCAAATTCCAAGTTGC+AGG - chr1_4:70615506-70615525 None:intergenic 40.0%
!! TTTGCAGCTTTATTCAGGTG+TGG + chr1_4:70616019-70616038 Msa0182220:intron 40.0%
!! TTGCAGCTTTATTCAGGTGT+GGG + chr1_4:70616020-70616039 Msa0182220:intron 40.0%
! CCGAAATGGTAGTCTTGATT+GGG - chr1_4:70616134-70616153 None:intergenic 40.0%
CCCAATCAAGACTACCATTT+CGG + chr1_4:70616131-70616150 Msa0182220:CDS 40.0%
CAATCTGATGCCATATTAGC+CGG - chr1_4:70616459-70616478 None:intergenic 40.0%
TTTCGAACAAGATGCAAACG+GGG + chr1_4:70616511-70616530 Msa0182220:CDS 40.0%
!! GGAGTAAAAGAAGAAGCACT+AGG - chr1_4:70616843-70616862 None:intergenic 40.0%
TTGATACACTCACCATGAGT+AGG + chr1_4:70616917-70616936 Msa0182220:intron 40.0%
TTACAACCTCAACCTACTCA+TGG - chr1_4:70616932-70616951 None:intergenic 40.0%
GTAAAAGGGAAATGGAGATG+AGG - chr1_4:70617220-70617239 None:intergenic 40.0%
AACAGCACGAATTTCTATGG+TGG + chr1_4:70617333-70617352 Msa0182220:intron 40.0%
ATTCAACTGTGAATGCGGTA+TGG + chr1_4:70617732-70617751 Msa0182220:intron 40.0%
!!! AGTGGTCACTTTTAGTGTTG+TGG + chr1_4:70617802-70617821 Msa0182220:intron 40.0%
AGATACCACCCAAAAACTTC+AGG + chr1_4:70618095-70618114 Msa0182220:CDS 40.0%
GCCTGAAACGTATTCAGAAA+AGG - chr1_4:70618245-70618264 None:intergenic 40.0%
TCTGAATACGTTTCAGGCAT+TGG + chr1_4:70618247-70618266 Msa0182220:intron 40.0%
ACAACTTAATGGAGCAGATG+GGG - chr1_4:70618462-70618481 None:intergenic 40.0%
CACAACTTAATGGAGCAGAT+GGG - chr1_4:70618463-70618482 None:intergenic 40.0%
! TCTAGCTTGCCACAACTTAA+TGG - chr1_4:70618473-70618492 None:intergenic 40.0%
! AGTTGCAGATTTTTCTCACC+TGG + chr1_4:70618495-70618514 Msa0182220:intron 40.0%
! TTTTTCTCACCTGGCTTACT+TGG + chr1_4:70618504-70618523 Msa0182220:intron 40.0%
TCTGCAGAAATGGTGAAAAC+AGG - chr1_4:70618724-70618743 None:intergenic 40.0%
ACAGTGAGAATCTGCAGAAA+TGG - chr1_4:70618734-70618753 None:intergenic 40.0%
!! TAGATGAGCTTCTGAAGCAA+AGG + chr1_4:70618931-70618950 Msa0182220:CDS 40.0%
!! AGATGAGCTTCTGAAGCAAA+GGG + chr1_4:70618932-70618951 Msa0182220:CDS 40.0%
TGACAATGGTGAAGGTAGAA+TGG - chr1_4:70618965-70618984 None:intergenic 40.0%
AAGTTTGATCCCATGACTCA+TGG - chr1_4:70619224-70619243 None:intergenic 40.0%
ACTACACCCAATATATCCAC+GGG - chr1_4:70619254-70619273 None:intergenic 40.0%
CACTACACCCAATATATCCA+CGG - chr1_4:70619255-70619274 None:intergenic 40.0%
!! TTGGTTTGTGATGCAGTCAA+AGG + chr1_4:70619340-70619359 Msa0182220:three_prime_UTR 40.0%
! AAACCAAAGCAGCATTGGGA+TGG + chr1_4:70613566-70613585 Msa0182220:five_prime_UTR 45.0%
TGTAAGACCAAGTTGCGAGA+TGG - chr1_4:70613652-70613671 None:intergenic 45.0%
TCCCTAACAAACACATTCCG+AGG + chr1_4:70613799-70613818 Msa0182220:five_prime_UTR 45.0%
AAAGAGAGGCTTCAGGTCTA+TGG + chr1_4:70614067-70614086 Msa0182220:exon 45.0%
! CGTGACCCTTACGAAGTTTT+AGG + chr1_4:70614128-70614147 Msa0182220:CDS 45.0%
!!! CGAAGTTTTAGGCGTTTCCA+AGG + chr1_4:70614139-70614158 Msa0182220:CDS 45.0%
TTCCAAGGAATCATCCGATC+AGG + chr1_4:70614154-70614173 Msa0182220:CDS 45.0%
TTCCTGATCGGATGATTCCT+TGG - chr1_4:70614159-70614178 None:intergenic 45.0%
!! GACTAAAGGTTGGTGCCTTT+AGG - chr1_4:70614408-70614427 None:intergenic 45.0%
!! TATAGCGAGATAGCGGATAG+GGG - chr1_4:70614979-70614998 None:intergenic 45.0%
!! CTATAGCGAGATAGCGGATA+GGG - chr1_4:70614980-70614999 None:intergenic 45.0%
GGATTGTTGGCATTCTTGTC+AGG - chr1_4:70615079-70615098 None:intergenic 45.0%
! CGTACTGCCTTCTCTTTTCT+GGG - chr1_4:70615156-70615175 None:intergenic 45.0%
! TCGTACTGCCTTCTCTTTTC+TGG - chr1_4:70615157-70615176 None:intergenic 45.0%
TTCATGCTGCTGAAAAGGGA+GGG - chr1_4:70615258-70615277 None:intergenic 45.0%
TTTCATGCTGCTGAAAAGGG+AGG - chr1_4:70615259-70615278 None:intergenic 45.0%
TCAAATTCCAAGTTGCAGGG+AGG - chr1_4:70615502-70615521 None:intergenic 45.0%
GAAACGCAAAAGAGCTTTCG+AGG - chr1_4:70615861-70615880 None:intergenic 45.0%
TGATGCTGATAGCATGGACA+TGG + chr1_4:70615958-70615977 Msa0182220:CDS 45.0%
! GCCGAAATGGTAGTCTTGAT+TGG - chr1_4:70616135-70616154 None:intergenic 45.0%
ACAGATGTTCCCATTGGAAG+GGG - chr1_4:70616201-70616220 None:intergenic 45.0%
GACAGATGTTCCCATTGGAA+GGG - chr1_4:70616202-70616221 None:intergenic 45.0%
TGACAGATGTTCCCATTGGA+AGG - chr1_4:70616203-70616222 None:intergenic 45.0%
TTCGAACAAGATGCAAACGG+GGG + chr1_4:70616512-70616531 Msa0182220:CDS 45.0%
AACAAGTCGAAGGGAGATGA+GGG - chr1_4:70616864-70616883 None:intergenic 45.0%
! TTCAACTGCAGAAGCGTGAA+GGG - chr1_4:70617025-70617044 None:intergenic 45.0%
! ATTCAACTGCAGAAGCGTGA+AGG - chr1_4:70617026-70617045 None:intergenic 45.0%
! ACTGGCGTTTTCTTCAAGCA+TGG + chr1_4:70617121-70617140 Msa0182220:intron 45.0%
AACAGGAAACACAAGGCCAA+AGG - chr1_4:70617370-70617389 None:intergenic 45.0%
! TTTCTTTGTTGCGGGCTGTT+TGG + chr1_4:70617777-70617796 Msa0182220:intron 45.0%
!! CTTTTAAAGAAAGCCCCCTC+AGG - chr1_4:70617851-70617870 None:intergenic 45.0%
CTGAGGGGGCTTTCTTTAAA+AGG + chr1_4:70617849-70617868 Msa0182220:CDS 45.0%
! GGGGGCTTTCTTTAAAAGGT+TGG + chr1_4:70617853-70617872 Msa0182220:CDS 45.0%
GAAGTTTCGGAACTAAAGCC+TGG + chr1_4:70617893-70617912 Msa0182220:CDS 45.0%
ACGGCAAATATATGTGTGCC+AGG - chr1_4:70617914-70617933 None:intergenic 45.0%
TGATGATCAGCTATGCTGTG+GGG - chr1_4:70618429-70618448 None:intergenic 45.0%
CTGATGATCAGCTATGCTGT+GGG - chr1_4:70618430-70618449 None:intergenic 45.0%
ACTGATGATCAGCTATGCTG+TGG - chr1_4:70618431-70618450 None:intergenic 45.0%
CCACAACTTAATGGAGCAGA+TGG - chr1_4:70618464-70618483 None:intergenic 45.0%
! CCATCTGCTCCATTAAGTTG+TGG + chr1_4:70618461-70618480 Msa0182220:intron 45.0%
CTTCAGAAGCTCATCTACCT+GGG - chr1_4:70618928-70618947 None:intergenic 45.0%
!! AGTACTGGTTGGCTTGACAA+TGG - chr1_4:70618979-70618998 None:intergenic 45.0%
AGATGGAGGGTCAGATAGTA+AGG + chr1_4:70619079-70619098 Msa0182220:CDS 45.0%
CAACCTCAATCTTAAGGGCT+CGG + chr1_4:70619127-70619146 Msa0182220:CDS 45.0%
AACCTCAATCTTAAGGGCTC+GGG + chr1_4:70619128-70619147 Msa0182220:CDS 45.0%
CTTGAGTGACCATGAGTCAT+GGG + chr1_4:70619212-70619231 Msa0182220:three_prime_UTR 45.0%
ATCAAACTTAAAGCAGCCCG+TGG + chr1_4:70619235-70619254 Msa0182220:three_prime_UTR 45.0%
AAAGCAGCCCGTGGATATAT+TGG + chr1_4:70619244-70619263 Msa0182220:three_prime_UTR 45.0%
AAGCAGCCCGTGGATATATT+GGG + chr1_4:70619245-70619264 Msa0182220:three_prime_UTR 45.0%
GGTTCCTCAAAGTTGTGAAC+TGG + chr1_4:70619301-70619320 Msa0182220:three_prime_UTR 45.0%
CCAACCAGTTCACAACTTTG+AGG - chr1_4:70619308-70619327 None:intergenic 45.0%
CCTCAAAGTTGTGAACTGGT+TGG + chr1_4:70619305-70619324 Msa0182220:three_prime_UTR 45.0%
TGAGGATGCTACAAGGGAAT+CGG - chr1_4:70619425-70619444 None:intergenic 45.0%
!! GTAAAAAAAAAAAAAAAAAA+AGG + chr1_4:70613623-70613642 Msa0182220:five_prime_UTR 5.0%
! GGTTTGGTTTCGCTAGAGTC+AGG - chr1_4:70613682-70613701 None:intergenic 50.0%
! TGGCATTGGATCGGTTACCT+CGG - chr1_4:70613819-70613838 None:intergenic 50.0%
CACGCGATTCAAAGTGGCAT+TGG - chr1_4:70613833-70613852 None:intergenic 50.0%
TAAGGGTCACGTCGAATTGC+TGG - chr1_4:70614119-70614138 None:intergenic 50.0%
ACCCTAATCCCTCTCCCTAA+AGG + chr1_4:70614390-70614409 Msa0182220:intron 50.0%
! GCCTTTAGGGAGAGGGATTA+GGG - chr1_4:70614394-70614413 None:intergenic 50.0%
! TGCCTTTAGGGAGAGGGATT+AGG - chr1_4:70614395-70614414 None:intergenic 50.0%
ATCTTGTCAGGGGCAACCTT+AGG - chr1_4:70614587-70614606 None:intergenic 50.0%
CTGTTGCTAGAGTAGCACCT+TGG + chr1_4:70614727-70614746 Msa0182220:intron 50.0%
AGAGGGTGAAAACTGATGGC+AGG - chr1_4:70614874-70614893 None:intergenic 50.0%
!! ATAGCGAGATAGCGGATAGG+GGG - chr1_4:70614978-70614997 None:intergenic 50.0%
!! GCTATAGCGAGATAGCGGAT+AGG - chr1_4:70614981-70615000 None:intergenic 50.0%
!!! CGCTATAGCTTTTCTAGGGC+CGG + chr1_4:70614992-70615011 Msa0182220:intron 50.0%
GGATAGCAGAGCATAGTGTC+CGG - chr1_4:70615014-70615033 None:intergenic 50.0%
GTACGACAGTGCAGGATTTG+AGG + chr1_4:70615171-70615190 Msa0182220:CDS 50.0%
ATGGCAAGCTCCCCAGAAAA+GGG - chr1_4:70615376-70615395 None:intergenic 50.0%
CATATTGCCTCCCTGCAACT+TGG + chr1_4:70615492-70615511 Msa0182220:intron 50.0%
GGCACTTGATGCTGATAGCA+TGG + chr1_4:70615952-70615971 Msa0182220:intron 50.0%
TACAGTCAGACCCCTTCCAA+TGG + chr1_4:70616188-70616207 Msa0182220:CDS 50.0%
ACAGTCAGACCCCTTCCAAT+GGG + chr1_4:70616189-70616208 Msa0182220:CDS 50.0%
CCACTGACAGATGTTCCCAT+TGG - chr1_4:70616207-70616226 None:intergenic 50.0%
CCAATGGGAACATCTGTCAG+TGG + chr1_4:70616204-70616223 Msa0182220:CDS 50.0%
GGGAACATCTGTCAGTGGAA+AGG + chr1_4:70616209-70616228 Msa0182220:CDS 50.0%
AATGAGCAGCAAGCTGAGTC+CGG + chr1_4:70616361-70616380 Msa0182220:CDS 50.0%
GGGCTATGGTTTAGCATTGC+AGG + chr1_4:70616532-70616551 Msa0182220:CDS 50.0%
CAACAAGTCGAAGGGAGATG+AGG - chr1_4:70616865-70616884 None:intergenic 50.0%
CACTCACCATGAGTAGGTTG+AGG + chr1_4:70616923-70616942 Msa0182220:intron 50.0%
TCTCACAGGCAGATATCCCA+TGG + chr1_4:70617055-70617074 Msa0182220:intron 50.0%
GAAATGGAGATGAGGGTGGA+GGG - chr1_4:70617212-70617231 None:intergenic 50.0%
AAGGGAAATGGAGATGAGGG+TGG - chr1_4:70617216-70617235 None:intergenic 50.0%
GGTGGCTGCTAATAAGCCTT+TGG + chr1_4:70617351-70617370 Msa0182220:intron 50.0%
CAGGAAGATAGCGAGAAGAC+TGG + chr1_4:70617656-70617675 Msa0182220:intron 50.0%
ACTGGCAAAGTGACATCTGC+TGG + chr1_4:70617674-70617693 Msa0182220:CDS 50.0%
TGTTGTGGTGCAGTTAGCGA+TGG + chr1_4:70617817-70617836 Msa0182220:intron 50.0%
GCTTCAGAAGCTCATCTACC+TGG - chr1_4:70618929-70618948 None:intergenic 50.0%
!! GAGCTTCTGAAGCAAAGGGA+CGG + chr1_4:70618936-70618955 Msa0182220:CDS 50.0%
!! GGTTGGCTTGACAATGGTGA+AGG - chr1_4:70618973-70618992 None:intergenic 50.0%
GTCAAGCCAACCAGTACTAG+TGG + chr1_4:70618981-70619000 Msa0182220:CDS 50.0%
!! CCACTTCCACTAGTACTGGT+TGG - chr1_4:70618990-70619009 None:intergenic 50.0%
CCAACCAGTACTAGTGGAAG+TGG + chr1_4:70618987-70619006 Msa0182220:CDS 50.0%
! ACTGCCACTTCCACTAGTAC+TGG - chr1_4:70618994-70619013 None:intergenic 50.0%
ATTCCAAAGGTGAGAGCCCT+GGG + chr1_4:70619054-70619073 Msa0182220:CDS 50.0%
AACCCGAGCCCTTAAGATTG+AGG - chr1_4:70619133-70619152 None:intergenic 50.0%
GCTTGAGTGACCATGAGTCA+TGG + chr1_4:70619211-70619230 Msa0182220:three_prime_UTR 50.0%
TGTGCCGCAAGGCTTGATAA+AGG - chr1_4:70619515-70619534 None:intergenic 50.0%
! TGGCCATCCCAATGCTGCTT+TGG - chr1_4:70613572-70613591 None:intergenic 55.0%
AAGGACGCCATCTCGCAACT+TGG + chr1_4:70613642-70613661 Msa0182220:five_prime_UTR 55.0%
! GGTTGGTGCCTTTAGGGAGA+GGG - chr1_4:70614401-70614420 None:intergenic 55.0%
!! AGGTTGGTGCCTTTAGGGAG+AGG - chr1_4:70614402-70614421 None:intergenic 55.0%
AGAAGGCAGTACGACAGTGC+AGG + chr1_4:70615163-70615182 Msa0182220:CDS 55.0%
GATGGCAAGCTCCCCAGAAA+AGG - chr1_4:70615377-70615396 None:intergenic 55.0%
ATGAGCAGCAAGCTGAGTCC+GGG + chr1_4:70616362-70616381 Msa0182220:CDS 55.0%
CAAGATGCAAACGGGGGCTA+TGG + chr1_4:70616518-70616537 Msa0182220:CDS 55.0%
TGTAAGCAGTCCCAACCACC+TGG + chr1_4:70616947-70616966 Msa0182220:intron 55.0%
GTAAGCAGTCCCAACCACCT+GGG + chr1_4:70616948-70616967 Msa0182220:intron 55.0%
TAAGCAGTCCCAACCACCTG+GGG + chr1_4:70616949-70616968 Msa0182220:intron 55.0%
GGAAATGGAGATGAGGGTGG+AGG - chr1_4:70617213-70617232 None:intergenic 55.0%
! GTTGCGGGCTGTTTGGAAAG+TGG + chr1_4:70617784-70617803 Msa0182220:intron 55.0%
!! TCAGGCATTGGCACGCTATC+AGG + chr1_4:70618259-70618278 Msa0182220:intron 55.0%
ATCGGCAAGCCAAGTAAGCC+AGG - chr1_4:70618516-70618535 None:intergenic 55.0%
GATTCCAAAGGTGAGAGCCC+TGG + chr1_4:70619053-70619072 Msa0182220:CDS 55.0%
TTCCAAAGGTGAGAGCCCTG+GGG + chr1_4:70619055-70619074 Msa0182220:CDS 55.0%
GGGTGGCACGCGATTCAAAG+TGG - chr1_4:70613839-70613858 None:intergenic 60.0%
!! CGAGATAGCGGATAGGGGGA+TGG - chr1_4:70614974-70614993 None:intergenic 60.0%
TGTTCTCGCCCCAGGTGGTT+GGG - chr1_4:70616960-70616979 None:intergenic 60.0%
ATGTTCTCGCCCCAGGTGGT+TGG - chr1_4:70616961-70616980 None:intergenic 60.0%
AACCACCTGGGGCGAGAACA+TGG + chr1_4:70616960-70616979 Msa0182220:intron 60.0%
ACCACCTGGGGCGAGAACAT+GGG + chr1_4:70616961-70616980 Msa0182220:intron 60.0%
TGGAGATGAGGGTGGAGGGA+GGG - chr1_4:70617208-70617227 None:intergenic 60.0%
ATGGAGATGAGGGTGGAGGG+AGG - chr1_4:70617209-70617228 None:intergenic 60.0%
GGTGCAGTTAGCGATGGCCA+AGG + chr1_4:70617823-70617842 Msa0182220:intron 60.0%
AGCGATGGCCAAGGATCCTG+AGG + chr1_4:70617832-70617851 Msa0182220:CDS 60.0%
GCGATGGCCAAGGATCCTGA+GGG + chr1_4:70617833-70617852 Msa0182220:CDS 60.0%
CGATGGCCAAGGATCCTGAG+GGG + chr1_4:70617834-70617853 Msa0182220:CDS 60.0%
GATGGCCAAGGATCCTGAGG+GGG + chr1_4:70617835-70617854 Msa0182220:CDS 60.0%
GAAAGCCCCCTCAGGATCCT+TGG - chr1_4:70617843-70617862 None:intergenic 60.0%
TTCCCCAGGGCTCTCACCTT+TGG - chr1_4:70619060-70619079 None:intergenic 60.0%
AGAGCCCTGGGGAAGATGGA+GGG + chr1_4:70619066-70619085 Msa0182220:CDS 60.0%
CTGACCCTCCATCTTCCCCA+GGG - chr1_4:70619073-70619092 None:intergenic 60.0%
TCTGACCCTCCATCTTCCCC+AGG - chr1_4:70619074-70619093 None:intergenic 60.0%
TCCCATGTTCTCGCCCCAGG+TGG - chr1_4:70616965-70616984 None:intergenic 65.0%
GAGTCCCATGTTCTCGCCCC+AGG - chr1_4:70616968-70616987 None:intergenic 65.0%
GGTGAGAGCCCTGGGGAAGA+TGG + chr1_4:70619062-70619081 Msa0182220:CDS 65.0%
GAGAGCCCTGGGGAAGATGG+AGG + chr1_4:70619065-70619084 Msa0182220:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 70613544 70619576 70613544 ID=Msa0182220;Name=Msa0182220
chr1_4 mRNA 70613544 70619576 70613544 ID=Msa0182220-mRNA-1;Parent=Msa0182220;Name=Msa0182220-mRNA-1;_AED=0.11;_eAED=0.11;_QI=342|1|1|1|0.90|0.83|12|404|414
chr1_4 exon 70613544 70613820 70613544 ID=Msa0182220-mRNA-1:exon:23610;Parent=Msa0182220-mRNA-1
chr1_4 exon 70614021 70614210 70614021 ID=Msa0182220-mRNA-1:exon:23611;Parent=Msa0182220-mRNA-1
chr1_4 exon 70615069 70615192 70615069 ID=Msa0182220-mRNA-1:exon:23612;Parent=Msa0182220-mRNA-1
chr1_4 exon 70615953 70616035 70615953 ID=Msa0182220-mRNA-1:exon:23613;Parent=Msa0182220-mRNA-1
chr1_4 exon 70616119 70616230 70616119 ID=Msa0182220-mRNA-1:exon:23614;Parent=Msa0182220-mRNA-1
chr1_4 exon 70616322 70616426 70616322 ID=Msa0182220-mRNA-1:exon:23615;Parent=Msa0182220-mRNA-1
chr1_4 exon 70616503 70616553 70616503 ID=Msa0182220-mRNA-1:exon:23616;Parent=Msa0182220-mRNA-1
chr1_4 exon 70617659 70617748 70617659 ID=Msa0182220-mRNA-1:exon:23617;Parent=Msa0182220-mRNA-1
chr1_4 exon 70617830 70617938 70617830 ID=Msa0182220-mRNA-1:exon:23618;Parent=Msa0182220-mRNA-1
chr1_4 exon 70618034 70618182 70618034 ID=Msa0182220-mRNA-1:exon:23619;Parent=Msa0182220-mRNA-1
chr1_4 exon 70618263 70618316 70618263 ID=Msa0182220-mRNA-1:exon:23620;Parent=Msa0182220-mRNA-1
chr1_4 exon 70618930 70619576 70618930 ID=Msa0182220-mRNA-1:exon:23621;Parent=Msa0182220-mRNA-1
chr1_4 five_prime_UTR 70613544 70613820 70613544 ID=Msa0182220-mRNA-1:five_prime_utr;Parent=Msa0182220-mRNA-1
chr1_4 five_prime_UTR 70614021 70614085 70614021 ID=Msa0182220-mRNA-1:five_prime_utr;Parent=Msa0182220-mRNA-1
chr1_4 CDS 70614086 70614210 70614086 ID=Msa0182220-mRNA-1:cds;Parent=Msa0182220-mRNA-1
chr1_4 CDS 70615069 70615192 70615069 ID=Msa0182220-mRNA-1:cds;Parent=Msa0182220-mRNA-1
chr1_4 CDS 70615953 70616035 70615953 ID=Msa0182220-mRNA-1:cds;Parent=Msa0182220-mRNA-1
chr1_4 CDS 70616119 70616230 70616119 ID=Msa0182220-mRNA-1:cds;Parent=Msa0182220-mRNA-1
chr1_4 CDS 70616322 70616426 70616322 ID=Msa0182220-mRNA-1:cds;Parent=Msa0182220-mRNA-1
chr1_4 CDS 70616503 70616553 70616503 ID=Msa0182220-mRNA-1:cds;Parent=Msa0182220-mRNA-1
chr1_4 CDS 70617659 70617748 70617659 ID=Msa0182220-mRNA-1:cds;Parent=Msa0182220-mRNA-1
chr1_4 CDS 70617830 70617938 70617830 ID=Msa0182220-mRNA-1:cds;Parent=Msa0182220-mRNA-1
chr1_4 CDS 70618034 70618182 70618034 ID=Msa0182220-mRNA-1:cds;Parent=Msa0182220-mRNA-1
chr1_4 CDS 70618263 70618316 70618263 ID=Msa0182220-mRNA-1:cds;Parent=Msa0182220-mRNA-1
chr1_4 CDS 70618930 70619172 70618930 ID=Msa0182220-mRNA-1:cds;Parent=Msa0182220-mRNA-1
chr1_4 three_prime_UTR 70619173 70619576 70619173 ID=Msa0182220-mRNA-1:three_prime_utr;Parent=Msa0182220-mRNA-1
Gene Sequence

>Msa0182220

ATGGATCAAAAGATGGAAGGAACATCTGCACCAGCAATTCGACGTGACCCTTACGAAGTTTTAGGCGTTTCCAAGGAATCATCCGATCAGGAAATTAAAACCGCTTACAGAAAACTTGCTCTCAAGTATCACCCTGACAAGAATGCCAACAATCCTGAAGCTTCAGAACTATTCAAAGAGGTTGCATATTCTTATAATATCTTATCTGACCCAGAAAAGAGAAGGCAGTACGACAGTGCAGGATTTGAGGCACTTGATGCTGATAGCATGGACATGGAAATCGATTTATCTAATCTTGGGACTGTGAACACAATGTTTGCAGCTTTATTCAGCAAGCTGGGTGTCCCAATCAAGACTACCATTTCGGCTAATGTTCTTGAAGAAGCTTTGAATGGCACTGTTACAGTCAGACCCCTTCCAATGGGAACATCTGTCAGTGGAAAGGTAGAGAAGCAATGTGCTCATTTTTTTGGTGTGACAATAAATGAGCAGCAAGCTGAGTCCGGGATTGTAGTAAGAGTTACTTCAACTGCACAAAGCAAATTCAAGTTGCTCTATTTCGAACAAGATGCAAACGGGGGCTATGGTTTAGCATTGCAGGAAGATAGCGAGAAGACTGGCAAAGTGACATCTGCTGGAATGTATTTCTTACATTTTCAAGTGTACAGAATGGATTCAACTGTGAATGCGTTAGCGATGGCCAAGGATCCTGAGGGGGCTTTCTTTAAAAGGTTGGAAGGTCTTCAACCTTGTGAAGTTTCGGAACTAAAGCCTGGCACACATATATTTGCCGTTTATGGCGATAACTTCTTTAAGACTGCTAGCTATACAATTGAAGCAGTATGTGCAAAATCACATGAAGATACCACCCAAAAACTTCAGGATATTGAGGCTCAAATTTTAAGAAAGAGGAATGAGCTACGGCAATTCGAATCAGAATATAGAAAGGCATTGGCACGCTATCAGGAAGTGACAGACAGATACACAAAAGAAAAACAGTCTGTAGATGAGCTTCTGAAGCAAAGGGACGGTATCCATTCTACCTTCACCATTGTCAAGCCAACCAGTACTAGTGGAAGTGGCAGTAATTTAAGCAATGGAAGTTCTAGCAAAATTTCTGGTGAAGATTCCAAAGGTGAGAGCCCTGGGGAAGATGGAGGGTCAGATAGTAAGGATAAATCAGGCAAAAAGAAATGGTTCAACCTCAATCTTAAGGGCTCGGGTTCTGATAAGAAGTTGATTTAA
Protein sequence

>Msa0182220

MDQKMEGTSAPAIRRDPYEVLGVSKESSDQEIKTAYRKLALKYHPDKNANNPEASELFKEVAYSYNILSDPEKRRQYDSAGFEALDADSMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPMGTSVSGKVEKQCAHFFGVTINEQQAESGIVVRVTSTAQSKFKLLYFEQDANGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEGAFFKRLEGLQPCEVSELKPGTHIFAVYGDNFFKTASYTIEAVCAKSHEDTTQKLQDIEAQILRKRNELRQFESEYRKALARYQEVTDRYTKEKQSVDELLKQRDGIHSTFTIVKPTSTSGSGSNLSNGSSSKISGEDSKGESPGEDGGSDSKDKSGKKKWFNLNLKGSGSDKKLI*