AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1224960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1224960 MtrunA17_Chr1g0209551 100.000 414 0 0 1 414 1 414 0.0 857
Msa1224960 MtrunA17_Chr5g0414471 61.461 397 138 3 13 405 22 407 0.0 514
Msa1224960 MtrunA17_Chr7g0269841 58.824 68 28 0 18 85 28 95 2.61e-17 82.8
Msa1224960 MtrunA17_Chr4g0010781 52.055 73 35 0 12 84 82 154 2.41e-16 80.5
Msa1224960 MtrunA17_Chr3g0087741 50.649 77 37 1 9 85 83 158 2.85e-16 80.5
Msa1224960 MtrunA17_Chr6g0478651 46.078 102 44 3 15 112 67 161 7.04e-16 79.3
Msa1224960 MtrunA17_Chr3g0123861 58.571 70 28 1 16 85 82 150 1.99e-15 77.8
Msa1224960 MtrunA17_Chr3g0088221 62.500 56 21 0 106 161 22 77 5.14e-15 70.1
Msa1224960 MtrunA17_Chr4g0006391 49.296 71 35 1 16 85 4 74 8.22e-15 75.1
Msa1224960 MtrunA17_Chr7g0271891 43.836 73 37 1 18 86 18 90 8.75e-15 72.0
Msa1224960 MtrunA17_Chr2g0282741 49.296 71 35 1 16 85 4 74 1.59e-14 74.3
Msa1224960 MtrunA17_Chr4g0040501 49.296 71 35 1 16 85 4 74 1.90e-14 74.3
Msa1224960 MtrunA17_Chr2g0282761 52.239 67 31 1 16 81 4 70 2.65e-14 73.6
Msa1224960 MtrunA17_Chr3g0138471 47.887 71 36 1 16 85 4 74 2.77e-14 73.6
Msa1224960 MtrunA17_Chr7g0258061 43.750 96 47 3 18 113 24 112 3.76e-14 72.4
Msa1224960 MtrunA17_Chr7g0263971 51.515 66 31 1 14 78 367 432 4.83e-14 73.6
Msa1224960 MtrunA17_Chr4g0021141 43.284 67 38 0 15 81 21 87 5.30e-14 68.9
Msa1224960 MtrunA17_Chr2g0328581 55.556 63 27 1 17 79 76 137 5.65e-14 70.5
Msa1224960 MtrunA17_Chr8g0334811 52.941 68 28 1 18 85 16 79 6.17e-14 73.2
Msa1224960 MtrunA17_Chr5g0399201 48.684 76 36 1 15 87 11 86 1.10e-13 72.8
Msa1224960 MtrunA17_Chr7g0242951 48.684 76 31 2 16 84 27 101 4.42e-13 70.9
Msa1224960 MtrunA17_Chr2g0324921 47.887 71 36 1 16 85 4 74 5.16e-13 69.7
Msa1224960 MtrunA17_Chr5g0427221 31.776 107 65 1 15 121 47 145 6.42e-13 65.9
Msa1224960 MtrunA17_Chr5g0393371 40.860 93 46 2 18 110 8 91 8.41e-13 69.7
Msa1224960 MtrunA17_Chr4g0061421 43.373 83 43 1 10 88 2 84 1.78e-12 69.3
Msa1224960 MtrunA17_Chr1g0173931 40.625 96 51 2 18 113 40 129 3.10e-12 67.0
Msa1224960 MtrunA17_Chr2g0333221 48.571 70 35 1 12 81 66 134 3.12e-12 68.2
Msa1224960 MtrunA17_Chr8g0344721 41.558 77 39 1 16 86 10 86 5.19e-12 65.5
Msa1224960 MtrunA17_Chr8g0352451 45.205 73 40 0 18 90 74 146 9.68e-12 66.2
Msa1224960 MtrunA17_Chr8g0371891 47.059 68 34 1 18 83 49 116 1.14e-11 62.4
Msa1224960 MtrunA17_Chr1g0159491 42.188 64 37 0 18 81 8 71 1.65e-11 60.1
Msa1224960 MtrunA17_Chr5g0426951 46.875 64 34 0 15 78 82 145 1.76e-11 65.9
Msa1224960 MtrunA17_Chr1g0206121 47.692 65 33 1 16 80 35 98 1.89e-11 64.7
Msa1224960 MtrunA17_Chr1g0159511 39.726 73 44 0 18 90 8 80 2.02e-11 65.1
Msa1224960 MtrunA17_Chr4g0044331 43.939 66 33 1 22 83 18 83 2.71e-11 61.6
Msa1224960 MtrunA17_Chr2g0295821 47.761 67 34 1 16 82 104 169 5.46e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1224960 AT1G68370.1 84.019 413 57 4 3 413 4 409 0.0 719
Msa1224960 AT1G24120.1 57.590 415 152 2 13 405 17 429 1.50e-177 502
Msa1224960 AT1G59980.1 52.618 401 179 3 14 412 21 412 5.67e-149 429
Msa1224960 AT1G59980.2 55.952 336 147 1 14 349 21 355 1.03e-137 398
Msa1224960 AT1G59980.3 51.117 358 164 3 57 412 1 349 7.29e-124 363
Msa1224960 AT3G62600.1 57.353 68 29 0 18 85 28 95 6.21e-16 79.0
Msa1224960 AT5G01390.3 51.389 72 34 1 16 86 4 75 8.06e-16 77.0
Msa1224960 AT5G01390.4 51.389 72 34 1 16 86 4 75 1.02e-15 76.6
Msa1224960 AT5G01390.2 51.389 72 34 1 16 86 4 75 1.40e-15 77.0
Msa1224960 AT2G20560.1 50.704 71 34 1 16 85 4 74 1.67e-15 77.8
Msa1224960 AT4G28480.2 50.704 71 34 1 16 85 4 74 1.78e-15 77.0
Msa1224960 AT5G01390.1 51.389 72 34 1 16 86 4 75 2.66e-15 77.0
Msa1224960 AT4G28480.1 50.704 71 34 1 16 85 4 74 2.92e-15 77.0
Msa1224960 AT3G08910.1 50.704 71 34 1 16 85 4 74 3.83e-15 76.3
Msa1224960 AT5G48030.1 50.667 75 37 0 15 89 93 167 5.21e-15 77.0
Msa1224960 AT2G22360.1 49.398 83 41 1 16 98 86 167 4.75e-14 73.9
Msa1224960 AT5G03160.1 51.515 66 31 1 14 78 368 433 5.23e-14 73.9
Msa1224960 AT1G74250.1 44.828 87 43 1 7 88 2 88 6.95e-14 73.9
Msa1224960 AT2G21510.3 46.575 73 39 0 18 90 8 80 6.98e-14 72.8
Msa1224960 AT2G21510.1 46.575 73 39 0 18 90 8 80 6.98e-14 72.8
Msa1224960 AT2G21510.2 46.575 73 39 0 18 90 8 80 7.06e-14 72.8
Msa1224960 AT2G21510.4 46.575 73 39 0 18 90 8 80 7.06e-14 72.8
Msa1224960 AT3G17830.1 49.315 73 36 1 16 88 63 134 8.08e-14 73.6
Msa1224960 AT5G16650.1 44.118 68 38 0 15 82 10 77 8.15e-14 68.6
Msa1224960 AT1G56300.1 44.286 70 35 1 13 78 10 79 8.32e-14 69.3
Msa1224960 AT2G21510.5 46.575 73 39 0 18 90 8 80 8.40e-14 72.4
Msa1224960 AT3G08970.1 54.412 68 30 1 16 83 27 93 9.16e-14 73.6
Msa1224960 AT3G08970.2 54.412 68 30 1 16 83 27 93 9.16e-14 73.6
Msa1224960 AT5G16650.2 44.776 67 37 0 15 81 10 76 1.11e-13 69.3
Msa1224960 AT1G56300.2 44.286 70 35 1 13 78 10 79 1.22e-13 67.8
Msa1224960 AT5G25530.2 46.479 71 37 1 16 85 4 74 1.45e-13 72.0
Msa1224960 AT4G39960.1 49.398 83 41 1 16 98 85 166 1.49e-13 72.4
Msa1224960 AT4G39960.2 49.398 83 41 1 16 98 85 166 1.49e-13 72.4
Msa1224960 AT1G80030.2 53.030 66 30 1 16 81 75 139 2.07e-13 72.4
Msa1224960 AT1G80030.3 53.030 66 30 1 16 81 75 139 2.07e-13 72.4
Msa1224960 AT1G80030.1 53.030 66 30 1 16 81 75 139 2.07e-13 72.4
Msa1224960 AT1G80030.4 53.030 66 30 1 16 81 75 139 2.30e-13 72.0
Msa1224960 AT1G71000.2 31.818 132 76 4 5 126 1 128 2.66e-13 68.2
Msa1224960 AT3G12170.1 40.625 96 51 2 18 113 13 102 3.33e-13 69.7
Msa1224960 AT5G06910.1 51.562 64 31 0 18 81 31 94 3.60e-13 70.1
Msa1224960 AT3G12170.2 40.625 96 51 2 18 113 49 138 5.05e-13 69.7
Msa1224960 AT2G41000.2 44.928 69 33 1 16 79 3 71 5.26e-13 68.2
Msa1224960 AT2G41000.1 44.928 69 33 1 16 79 3 71 1.07e-12 66.6
Msa1224960 AT4G39150.3 43.836 73 41 0 18 90 8 80 1.84e-12 68.6
Msa1224960 AT4G39150.1 43.836 73 41 0 18 90 8 80 1.84e-12 68.6
Msa1224960 AT4G39150.2 43.836 73 41 0 18 90 8 80 1.84e-12 68.6
Msa1224960 AT5G59610.2 50.000 66 32 1 14 79 71 135 1.98e-12 67.4
Msa1224960 AT1G59725.1 43.243 74 40 1 16 87 4 77 2.28e-12 68.2
Msa1224960 AT1G10350.1 42.254 71 40 1 16 85 4 74 2.50e-12 68.2
Msa1224960 AT1G21080.3 41.892 74 43 0 18 91 8 81 2.55e-12 68.6
Msa1224960 AT1G21080.1 41.892 74 43 0 18 91 8 81 2.60e-12 68.6
Msa1224960 AT5G59610.1 50.000 66 32 1 14 79 71 135 4.00e-12 66.6
Msa1224960 AT5G59610.4 50.000 66 32 1 14 79 71 135 4.00e-12 66.6
Msa1224960 AT5G59610.3 50.000 66 32 1 14 79 71 135 4.06e-12 66.6
Msa1224960 AT5G59610.5 50.000 66 32 1 14 79 71 135 4.06e-12 66.6
Msa1224960 AT2G33735.1 42.188 64 37 0 15 78 21 84 4.40e-12 63.2
Msa1224960 AT2G33735.2 42.188 64 37 0 15 78 21 84 4.40e-12 63.2
Msa1224960 AT1G28210.3 41.667 72 42 0 15 86 47 118 5.34e-12 67.4
Msa1224960 AT1G28210.1 41.667 72 42 0 15 86 47 118 5.55e-12 67.4
Msa1224960 AT1G28210.2 41.667 72 42 0 15 86 47 118 5.91e-12 67.4
Msa1224960 AT5G49060.2 49.254 67 33 1 16 82 99 164 1.67e-11 65.9
Msa1224960 AT5G49060.1 49.254 67 33 1 16 82 99 164 1.67e-11 65.9
Msa1224960 AT1G71000.1 39.286 84 43 2 5 84 1 80 1.78e-11 62.8
Msa1224960 AT1G76700.1 38.710 93 48 2 18 110 8 91 2.02e-11 65.9
Msa1224960 AT2G35720.1 41.758 91 46 3 1 87 2 89 2.59e-11 65.9
Msa1224960 AT5G25530.1 41.772 79 37 2 16 85 4 82 3.20e-11 64.7
Msa1224960 AT4G21180.2 44.776 67 35 2 16 81 19 84 5.09e-11 65.1
Msa1224960 AT4G21180.1 44.776 67 35 2 16 81 99 164 5.21e-11 65.1
Msa1224960 AT3G14200.1 35.052 97 60 1 5 98 1 97 7.37e-11 62.4

Find 129 sgRNAs with CRISPR-Local

Find 404 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACATATATTTGCCGTTTA+TGG 0.136662 8_1:+90096636 Msa1224960:CDS
GGAAGTTCTAGCAAAATTTC+TGG 0.196708 8_1:+90097747 Msa1224960:CDS
CAATGTTTGCAGCTTTATTC+AGG 0.268018 8_1:+90094733 Msa1224960:CDS
TTCCCCAGGGCTCTCACCTT+TGG 0.274890 8_1:-90097778 None:intergenic
AAAGCAGCCCGTGGATATAT+TGG 0.290376 8_1:+90097965 Msa1224960:three_prime_UTR
TCAGGCATTGGCACGCTATC+AGG 0.305387 8_1:+90096979 Msa1224960:intron
TTGAATAGTTCTGAAGCTTC+AGG 0.318305 8_1:-90093816 None:intergenic
TGGCCATCCCAATGCTGCTT+TGG 0.320422 8_1:-90092289 None:intergenic
TACCTCGGAATGTGTTTGTT+AGG 0.320607 8_1:-90092520 None:intergenic
GGATTGTTGGCATTCTTGTC+AGG 0.332047 8_1:-90093795 None:intergenic
AAAGAGAGGCTTCAGGTCTA+TGG 0.335119 8_1:+90092786 Msa1224960:exon
GAAATCGATTTATCTAATCT+TGG 0.354013 8_1:+90094699 Msa1224960:CDS
AAAGAAAGAAAGAAAGAAAC+AGG 0.355747 8_1:-90092472 None:intergenic
TTCAAGAACATTAGCCGAAA+TGG 0.367637 8_1:-90094864 None:intergenic
TTCTGAAGCTTCAGGATTGT+TGG 0.367958 8_1:-90093808 None:intergenic
CCCAATCAAGACTACCATTT+CGG 0.369384 8_1:+90094850 Msa1224960:CDS
TCTTCAACCTTGTGAAGTTT+CGG 0.371250 8_1:+90096599 Msa1224960:CDS
GCCGAAATGGTAGTCTTGAT+TGG 0.375333 8_1:-90094851 None:intergenic
AATTCAAGAACACAAGAAAC+TGG 0.387032 8_1:-90092419 None:intergenic
AGATGGAGGGTCAGATAGTA+AGG 0.390540 8_1:+90097800 Msa1224960:CDS
ATGGTTCAACCTCAATCTTA+AGG 0.396575 8_1:+90097842 Msa1224960:CDS
TGTGCCGCAAGGCTTGATAA+AGG 0.397229 8_1:-90098233 None:intergenic
TAAATTATTCAGACCATAAA+CGG 0.401187 8_1:-90096649 None:intergenic
CAACCTCAATCTTAAGGGCT+CGG 0.401801 8_1:+90097848 Msa1224960:CDS
TGGTTGGTTAATTTGTTCAT+TGG 0.402552 8_1:+90098042 Msa1224960:three_prime_UTR
GGGCTATGGTTTAGCATTGC+AGG 0.403402 8_1:+90095251 Msa1224960:CDS
TCGGAAAATTTGAGTCTCAT+TGG 0.405324 8_1:-90098124 None:intergenic
GGTTCCTCAAAGTTGTGAAC+TGG 0.407085 8_1:+90098022 Msa1224960:three_prime_UTR
TAAGGGTCACGTCGAATTGC+TGG 0.410479 8_1:-90092835 None:intergenic
AAGCAGCCCGTGGATATATT+GGG 0.418295 8_1:+90097966 Msa1224960:three_prime_UTR
ATTTCGAACAAGATGCAAAC+GGG 0.423149 8_1:+90095229 Msa1224960:CDS
ACCTCGGAATGTGTTTGTTA+GGG 0.430343 8_1:-90092519 None:intergenic
AAATCGATTTATCTAATCTT+GGG 0.433620 8_1:+90094700 Msa1224960:CDS
AACTGCACAAAGCAAATTCA+AGG 0.433774 8_1:+90095124 Msa1224960:CDS
AATGAGCAGCAAGCTGAGTC+CGG 0.438090 8_1:+90095080 Msa1224960:CDS
TTCCTGATCGGATGATTCCT+TGG 0.440358 8_1:-90092875 None:intergenic
AAGAACACAAGAAACTGGTT+TGG 0.445552 8_1:-90092414 None:intergenic
AACCTCAATCTTAAGGGCTC+GGG 0.448187 8_1:+90097849 Msa1224960:CDS
GTTCTTGAAGAAGCTTTGAA+TGG 0.448738 8_1:+90094878 Msa1224960:CDS
GGTGAGAGCCCTGGGGAAGA+TGG 0.452090 8_1:+90097783 Msa1224960:CDS
CCAACCAGTTCACAACTTTG+AGG 0.453631 8_1:-90098026 None:intergenic
CCGAAATGGTAGTCTTGATT+GGG 0.459457 8_1:-90094850 None:intergenic
TGGTTCAACCTCAATCTTAA+GGG 0.459920 8_1:+90097843 Msa1224960:CDS
TAAAGAGAAAGAGAGGCTTC+AGG 0.462041 8_1:+90092779 Msa1224960:five_prime_UTR
ACTGGCAAAGTGACATCTGC+TGG 0.462289 8_1:+90096393 Msa1224960:CDS
TCAGATAGTAAGGATAAATC+AGG 0.462722 8_1:+90097810 Msa1224960:CDS
GGTTTGGTTTCGCTAGAGTC+AGG 0.463214 8_1:-90092398 None:intergenic
TAATTAAACCAAAGCAGCAT+TGG 0.469609 8_1:+90092281 Msa1224960:five_prime_UTR
ATTCCAAAGGTGAGAGCCCT+GGG 0.470174 8_1:+90097775 Msa1224960:CDS
AATTAAACCAAAGCAGCATT+GGG 0.477522 8_1:+90092282 Msa1224960:five_prime_UTR
TTTATTTGGTAACAGCAAGC+TGG 0.478612 8_1:+90094823 Msa1224960:intron
TATACATTCAAAATGCTCAA+TGG 0.488983 8_1:-90092309 None:intergenic
TTCCAAGGAATCATCCGATC+AGG 0.491880 8_1:+90092873 Msa1224960:CDS
TCTGACCCTCCATCTTCCCC+AGG 0.494682 8_1:-90097792 None:intergenic
TGACAATGGTGAAGGTAGAA+TGG 0.495930 8_1:-90097683 None:intergenic
GTACGACAGTGCAGGATTTG+AGG 0.501253 8_1:+90093890 Msa1224960:CDS
AAGTTTGATCCCATGACTCA+TGG 0.502042 8_1:-90097942 None:intergenic
AACCCGAGCCCTTAAGATTG+AGG 0.504980 8_1:-90097851 None:intergenic
ACTGCCACTTCCACTAGTAC+TGG 0.506538 8_1:-90097712 None:intergenic
ATAAAGATAAAGAGAAAGAG+AGG 0.508670 8_1:+90092772 Msa1224960:five_prime_UTR
GATTCCAAAGGTGAGAGCCC+TGG 0.509111 8_1:+90097774 Msa1224960:CDS
TTATTTGGTAACAGCAAGCT+GGG 0.510014 8_1:+90094824 Msa1224960:intron
GATTGTTGGCATTCTTGTCA+GGG 0.511190 8_1:-90093794 None:intergenic
TGAGGATGCTACAAGGGAAT+CGG 0.513549 8_1:-90098143 None:intergenic
GAAACGCCTAAAACTTCGTA+AGG 0.514888 8_1:-90092853 None:intergenic
ACGGCAAATATATGTGTGCC+AGG 0.520233 8_1:-90096630 None:intergenic
GAAGTTTCGGAACTAAAGCC+TGG 0.523940 8_1:+90096612 Msa1224960:CDS
CAGGAAGATAGCGAGAAGAC+TGG 0.526539 8_1:+90096375 Msa1224960:intron
AAGGACGCCATCTCGCAACT+TGG 0.527310 8_1:+90092361 Msa1224960:five_prime_UTR
CAGGTCTATGGATCAAAAGA+TGG 0.537155 8_1:+90092798 Msa1224960:exon
AGAAGGCAGTACGACAGTGC+AGG 0.538322 8_1:+90093882 Msa1224960:CDS
ATGAGCAGCAAGCTGAGTCC+GGG 0.538924 8_1:+90095081 Msa1224960:CDS
AGGCTTGATAAAGGAAAAGA+AGG 0.539248 8_1:-90098224 None:intergenic
ACAGTCAGACCCCTTCCAAT+GGG 0.539807 8_1:+90094908 Msa1224960:CDS
TATTTCGAACAAGATGCAAA+CGG 0.540322 8_1:+90095228 Msa1224960:CDS
GGCACTTGATGCTGATAGCA+TGG 0.541278 8_1:+90094671 Msa1224960:intron
TGACAGATGTTCCCATTGGA+AGG 0.542282 8_1:-90094919 None:intergenic
CCAACCAGTACTAGTGGAAG+TGG 0.543516 8_1:+90097708 Msa1224960:CDS
CCACTTCCACTAGTACTGGT+TGG 0.543648 8_1:-90097708 None:intergenic
CCACTGACAGATGTTCCCAT+TGG 0.546382 8_1:-90094923 None:intergenic
TTGGTTTGTGATGCAGTCAA+AGG 0.547925 8_1:+90098061 Msa1224960:three_prime_UTR
TACAGTCAGACCCCTTCCAA+TGG 0.549746 8_1:+90094907 Msa1224960:CDS
CACTACACCCAATATATCCA+CGG 0.551627 8_1:-90097973 None:intergenic
GAGAGCCCTGGGGAAGATGG+AGG 0.552103 8_1:+90097786 Msa1224960:CDS
TAAGAAAGAGGAATGAGCTA+CGG 0.559189 8_1:+90096856 Msa1224960:CDS
ATTCGAATCAGAATATAGAA+AGG 0.559792 8_1:+90096881 Msa1224960:CDS
AGTGGCAGTAATTTAAGCAA+TGG 0.561362 8_1:+90097726 Msa1224960:CDS
AGAGCCCTGGGGAAGATGGA+GGG 0.564660 8_1:+90097787 Msa1224960:CDS
AGCTTCAGAACTATTCAAAG+AGG 0.565165 8_1:+90093821 Msa1224960:CDS
TAGATGAGCTTCTGAAGCAA+AGG 0.568314 8_1:+90097652 Msa1224960:CDS
GACAGATGTTCCCATTGGAA+GGG 0.577219 8_1:-90094918 None:intergenic
CCTCAAAGTTGTGAACTGGT+TGG 0.577735 8_1:+90098026 Msa1224960:three_prime_UTR
AGATGAGCTTCTGAAGCAAA+GGG 0.578480 8_1:+90097653 Msa1224960:CDS
ACAGATGTTCCCATTGGAAG+GGG 0.585092 8_1:-90094917 None:intergenic
GTCAAGCCAACCAGTACTAG+TGG 0.588616 8_1:+90097702 Msa1224960:CDS
GCTTTCTTTAAAAGGTTGGA+AGG 0.589624 8_1:+90096576 Msa1224960:CDS
AGTAACTCTTACTACAATCC+CGG 0.591228 8_1:-90095099 None:intergenic
TATATGTTGAGGATGCTACA+AGG 0.593654 8_1:-90098150 None:intergenic
GGGAACATCTGTCAGTGGAA+AGG 0.595107 8_1:+90094928 Msa1224960:CDS
AAACCAAAGCAGCATTGGGA+TGG 0.595402 8_1:+90092286 Msa1224960:five_prime_UTR
CTGACCCTCCATCTTCCCCA+GGG 0.596536 8_1:-90097791 None:intergenic
TCCCTAACAAACACATTCCG+AGG 0.601621 8_1:+90092518 Msa1224960:five_prime_UTR
TCTATGGATCAAAAGATGGA+AGG 0.606940 8_1:+90092802 Msa1224960:exon
GCTTGAGTGACCATGAGTCA+TGG 0.607603 8_1:+90097932 Msa1224960:three_prime_UTR
TGTAAGACCAAGTTGCGAGA+TGG 0.610392 8_1:-90092368 None:intergenic
CTTGAGTGACCATGAGTCAT+GGG 0.611648 8_1:+90097933 Msa1224960:three_prime_UTR
TATCTGACCCAGAAAAGAGA+AGG 0.614795 8_1:+90093865 Msa1224960:CDS
ACTACACCCAATATATCCAC+GGG 0.622246 8_1:-90097972 None:intergenic
TGTTGTGGTGCAGTTAGCGA+TGG 0.622724 8_1:+90096536 Msa1224960:intron
AGCGATGGCCAAGGATCCTG+AGG 0.626922 8_1:+90096551 Msa1224960:CDS
GCGATGGCCAAGGATCCTGA+GGG 0.627814 8_1:+90096552 Msa1224960:CDS
GGTGCAGTTAGCGATGGCCA+AGG 0.631797 8_1:+90096542 Msa1224960:intron
ATTTCTGGTGAAGATTCCAA+AGG 0.636229 8_1:+90097762 Msa1224960:CDS
AATGGATTCAACTGTGAATG+CGG 0.640290 8_1:+90096446 Msa1224960:CDS
ATATGTTGAGGATGCTACAA+GGG 0.642836 8_1:-90098149 None:intergenic
TGATGCTGATAGCATGGACA+TGG 0.647234 8_1:+90094677 Msa1224960:CDS
ATCAAACTTAAAGCAGCCCG+TGG 0.648796 8_1:+90097956 Msa1224960:three_prime_UTR
TTTAGTTCCGAAACTTCACA+AGG 0.659450 8_1:-90096606 None:intergenic
TTTCGAACAAGATGCAAACG+GGG 0.666223 8_1:+90095230 Msa1224960:CDS
GATGGCCAAGGATCCTGAGG+GGG 0.667249 8_1:+90096554 Msa1224960:CDS
GAGCTTCTGAAGCAAAGGGA+CGG 0.671749 8_1:+90097657 Msa1224960:CDS
CCAATGGGAACATCTGTCAG+TGG 0.675083 8_1:+90094923 Msa1224960:CDS
AGTACTGGTTGGCTTGACAA+TGG 0.678755 8_1:-90097697 None:intergenic
AAACGCCTAAAACTTCGTAA+GGG 0.680076 8_1:-90092852 None:intergenic
TTTCTATTCGAACAACAACA+CGG 0.688474 8_1:-90092748 None:intergenic
GGTTGGCTTGACAATGGTGA+AGG 0.708781 8_1:-90097691 None:intergenic
TTCGAACAAGATGCAAACGG+GGG 0.711604 8_1:+90095231 Msa1224960:CDS
CGATGGCCAAGGATCCTGAG+GGG 0.716333 8_1:+90096553 Msa1224960:CDS
TTCCAAAGGTGAGAGCCCTG+GGG 0.764572 8_1:+90097776 Msa1224960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATTTATTTAGTCAAAAT+TGG + chr8_1:90094269-90094288 Msa1224960:intron 10.0%
!! AAAGTTACATATTAATTAAA+AGG - chr8_1:90094627-90094646 None:intergenic 10.0%
!!! AATTTAATACCAATATATTT+TGG - chr8_1:90095612-90095631 None:intergenic 10.0%
!! TAATAATCGAATTCAAAAAA+GGG - chr8_1:90092593-90092612 None:intergenic 15.0%
!! AAAAAAGCAAAAAAAAAATG+AGG - chr8_1:90092963-90092982 None:intergenic 15.0%
!! TTATAAAAAACTGAATCTTT+AGG - chr8_1:90093159-90093178 None:intergenic 15.0%
!! AATAAATATAATATTTGACG+TGG - chr8_1:90094259-90094278 None:intergenic 15.0%
!!! ATAGTTTGCTTTTTATATAT+CGG + chr8_1:90094492-90094511 Msa1224960:intron 15.0%
!!! TGGTTTGTTTTTTTATATAT+CGG + chr8_1:90094540-90094559 Msa1224960:intron 15.0%
!! AATGAGATAATATATTGTTA+AGG + chr8_1:90095422-90095441 Msa1224960:intron 15.0%
!! ATGAGATAATATATTGTTAA+GGG + chr8_1:90095423-90095442 Msa1224960:intron 15.0%
!!! TTAATAGTCATTTCAATTTT+TGG - chr8_1:90095811-90095830 None:intergenic 15.0%
!!! AATTTGAGATATAAGTTAAT+GGG - chr8_1:90095901-90095920 None:intergenic 15.0%
!! TATCAAAAATATATATGTTG+AGG - chr8_1:90098164-90098183 None:intergenic 15.0%
!! GTAATAATCGAATTCAAAAA+AGG - chr8_1:90092594-90092613 None:intergenic 20.0%
!! CATAGTAATTTGAATTACAA+AGG - chr8_1:90093207-90093226 None:intergenic 20.0%
!! TAATTCAAATTACTATGTCT+GGG + chr8_1:90093210-90093229 Msa1224960:intron 20.0%
!!! AAAAATTTAGAATCTTGTCA+GGG - chr8_1:90093317-90093336 None:intergenic 20.0%
!! TTAAGGTTATGACTTAAAAT+TGG + chr8_1:90093405-90093424 Msa1224960:intron 20.0%
!! TAAGGTTATGACTTAAAATT+GGG + chr8_1:90093406-90093425 Msa1224960:intron 20.0%
!! AAATACTATAGATTAGTGTT+TGG + chr8_1:90093543-90093562 Msa1224960:intron 20.0%
!! AATACTATAGATTAGTGTTT+GGG + chr8_1:90093544-90093563 Msa1224960:intron 20.0%
!! ATAAATTGTTTAAACTGTGT+AGG + chr8_1:90093651-90093670 Msa1224960:intron 20.0%
!!! TATAATTTTTTCCCTTTTCT+GGG + chr8_1:90094081-90094100 Msa1224960:intron 20.0%
!! AAAAACAGTACATATGTATA+AGG - chr8_1:90094342-90094361 None:intergenic 20.0%
!! ATAGTAATCTATGAAAAGAT+AGG - chr8_1:90094375-90094394 None:intergenic 20.0%
!!! AAATCGATTTATCTAATCTT+GGG + chr8_1:90094700-90094719 Msa1224960:CDS 20.0%
!! TCAAAAGTAACAAAGTTTAT+TGG + chr8_1:90095473-90095492 Msa1224960:intron 20.0%
!!! GTTGATTTACCAAAATATAT+TGG + chr8_1:90095600-90095619 Msa1224960:intron 20.0%
!! GACTATTAACTTTATATTAC+TGG + chr8_1:90095822-90095841 Msa1224960:intron 20.0%
!!! GAATTTGAGATATAAGTTAA+TGG - chr8_1:90095902-90095921 None:intergenic 20.0%
!!! ATCTATGAATCAATTTTGAA+TGG - chr8_1:90096270-90096289 None:intergenic 20.0%
!! TAAATTATTCAGACCATAAA+CGG - chr8_1:90096652-90096671 None:intergenic 20.0%
!!! TTTTTTTTTTTTGCTTGCTT+GGG + chr8_1:90096685-90096704 Msa1224960:intron 20.0%
!! CAATTATCAGAATTTAATAG+AGG + chr8_1:90097275-90097294 Msa1224960:intron 20.0%
!!! TAATTTGTCTGTTATTTTTC+TGG + chr8_1:90097620-90097639 Msa1224960:intron 20.0%
! TATACATTCAAAATGCTCAA+TGG - chr8_1:90092312-90092331 None:intergenic 25.0%
! AAAGAAAGAAAGAAAGAAAC+AGG - chr8_1:90092475-90092494 None:intergenic 25.0%
! AAAAAGGGAAAAGAGATTAT+GGG - chr8_1:90092578-90092597 None:intergenic 25.0%
! AAAAAAGGGAAAAGAGATTA+TGG - chr8_1:90092579-90092598 None:intergenic 25.0%
! AATTGAACAAACCACTTATT+AGG + chr8_1:90092629-90092648 Msa1224960:intron 25.0%
! ATAAAGATAAAGAGAAAGAG+AGG + chr8_1:90092772-90092791 Msa1224960:five_prime_UTR 25.0%
! TTAGGAAACATAAAGACTAA+AGG - chr8_1:90093141-90093160 None:intergenic 25.0%
! GTAATTCAAATTACTATGTC+TGG + chr8_1:90093209-90093228 Msa1224960:intron 25.0%
!! AAAATTTAGAATCTTGTCAG+GGG - chr8_1:90093316-90093335 None:intergenic 25.0%
!! CAAAAATTTAGAATCTTGTC+AGG - chr8_1:90093318-90093337 None:intergenic 25.0%
!! GTGAAAAAACACTCATTTTA+AGG + chr8_1:90093388-90093407 Msa1224960:intron 25.0%
! TCATAACCATTCAAATTGAA+GGG - chr8_1:90093488-90093507 None:intergenic 25.0%
!!! AAAACAAAAGTTTTGGCTAA+TGG + chr8_1:90093995-90094014 Msa1224960:intron 25.0%
!!! CTATAATTTTTTCCCTTTTC+TGG + chr8_1:90094080-90094099 Msa1224960:intron 25.0%
!!! ATAATTTTTTCCCTTTTCTG+GGG + chr8_1:90094082-90094101 Msa1224960:intron 25.0%
! AAAACATGAGTCATTTGTTT+CGG + chr8_1:90094310-90094329 Msa1224960:intron 25.0%
! TTCATAGATTACTATCCTTT+CGG + chr8_1:90094380-90094399 Msa1224960:intron 25.0%
!! GAAATCGATTTATCTAATCT+TGG + chr8_1:90094699-90094718 Msa1224960:CDS 25.0%
!! GCATTGTTTCTTACTTTATT+TGG + chr8_1:90094809-90094828 Msa1224960:intron 25.0%
! TTGTTCTTATTCCACTTATA+TGG + chr8_1:90095005-90095024 Msa1224960:intron 25.0%
! TACAAAAGCAACACTTAAAA+AGG - chr8_1:90095297-90095316 None:intergenic 25.0%
! ACTTTGACAACAACAAATAA+GGG - chr8_1:90095331-90095350 None:intergenic 25.0%
! AACTTTGACAACAACAAATA+AGG - chr8_1:90095332-90095351 None:intergenic 25.0%
! TCTCTGCAATAAATACTTAA+GGG - chr8_1:90095389-90095408 None:intergenic 25.0%
! ATCTCTGCAATAAATACTTA+AGG - chr8_1:90095390-90095409 None:intergenic 25.0%
!!! ACAAAGTTTATTGGTTTTCT+TGG + chr8_1:90095482-90095501 Msa1224960:intron 25.0%
! CATAAAACAGACAACTAAAA+AGG + chr8_1:90095519-90095538 Msa1224960:intron 25.0%
! GCATAATATTAGTAAACACT+AGG + chr8_1:90095971-90095990 Msa1224960:intron 25.0%
! TTTATCCAGATGATAAAAAC+AGG - chr8_1:90096106-90096125 None:intergenic 25.0%
!!! AAGTTTGAAGGAATTGATTT+TGG - chr8_1:90096131-90096150 None:intergenic 25.0%
! GTATGGATATTATGTCTATT+TGG + chr8_1:90096468-90096487 Msa1224960:intron 25.0%
!!! GTTTTTTTTTTTTGCTTGCT+TGG + chr8_1:90096684-90096703 Msa1224960:intron 25.0%
!!! AATTCGAGTTGATATTGTTT+AGG + chr8_1:90096732-90096751 Msa1224960:intron 25.0%
! ATTCGAATCAGAATATAGAA+AGG + chr8_1:90096881-90096900 Msa1224960:CDS 25.0%
! TCAGAATTTAATAGAGGAAA+AGG + chr8_1:90097281-90097300 Msa1224960:intron 25.0%
! ATAAATCAGGCAAAAAGAAA+TGG + chr8_1:90097823-90097842 Msa1224960:CDS 25.0%
! TCTCATTGGACAAAAAATAT+AGG - chr8_1:90098113-90098132 None:intergenic 25.0%
TAATTAAACCAAAGCAGCAT+TGG + chr8_1:90092281-90092300 Msa1224960:five_prime_UTR 30.0%
AATTAAACCAAAGCAGCATT+GGG + chr8_1:90092282-90092301 Msa1224960:five_prime_UTR 30.0%
AATTCAAGAACACAAGAAAC+TGG - chr8_1:90092422-90092441 None:intergenic 30.0%
GTATTGTTTGACCTAATAAG+TGG - chr8_1:90092643-90092662 None:intergenic 30.0%
!!! GTAGAATTGAGCTTTTTTGA+GGG - chr8_1:90092703-90092722 None:intergenic 30.0%
AGTAGCTGTTGAATGAAAAA+AGG - chr8_1:90092725-90092744 None:intergenic 30.0%
TTTCTATTCGAACAACAACA+CGG - chr8_1:90092751-90092770 None:intergenic 30.0%
ATGAGGTAGAAAGTGAAAAA+GGG - chr8_1:90092946-90092965 None:intergenic 30.0%
AATGAGGTAGAAAGTGAAAA+AGG - chr8_1:90092947-90092966 None:intergenic 30.0%
! TTGATGACCTTCAAAATCTA+GGG - chr8_1:90093075-90093094 None:intergenic 30.0%
GAAACATAAAGACTAAAGGT+TGG - chr8_1:90093137-90093156 None:intergenic 30.0%
! ACAGGTTAATTAGGATTTTG+GGG - chr8_1:90093361-90093380 None:intergenic 30.0%
! GACAGGTTAATTAGGATTTT+GGG - chr8_1:90093362-90093381 None:intergenic 30.0%
!!! ATGAGTGTTTTTTCACGTTT+TGG - chr8_1:90093384-90093403 None:intergenic 30.0%
GTCATAACCATTCAAATTGA+AGG - chr8_1:90093489-90093508 None:intergenic 30.0%
! AATGGTTATGACTTTTGCTT+GGG + chr8_1:90093497-90093516 Msa1224960:intron 30.0%
CTGATCTCTATATAATTGAC+AGG + chr8_1:90093766-90093785 Msa1224960:intron 30.0%
! CAGCATGAAAACAAAAGTTT+TGG + chr8_1:90093988-90094007 Msa1224960:intron 30.0%
ATTTACCAAGTTATCTAGCT+TGG + chr8_1:90094027-90094046 Msa1224960:intron 30.0%
ATAGAAGTAAGATGTCAAGA+TGG - chr8_1:90094114-90094133 None:intergenic 30.0%
TTGACATCTTACTTCTATGA+TGG + chr8_1:90094116-90094135 Msa1224960:intron 30.0%
TAATCTATGAAAAGATAGGC+AGG - chr8_1:90094371-90094390 None:intergenic 30.0%
ATTAAAAGGAGAGTTGTATC+AGG - chr8_1:90094613-90094632 None:intergenic 30.0%
! CTATTTTGCCTATGTATATC+AGG + chr8_1:90094650-90094669 Msa1224960:intron 30.0%
AAGCAATGCAATAATCTTCT+TGG + chr8_1:90094975-90094994 Msa1224960:intron 30.0%
!!! AAGCAATGTGCTCATTTTTT+TGG + chr8_1:90095047-90095066 Msa1224960:CDS 30.0%
!!! TGCCTTTTTTACAATGATTC+CGG + chr8_1:90095156-90095175 Msa1224960:intron 30.0%
TATTTCGAACAAGATGCAAA+CGG + chr8_1:90095228-90095247 Msa1224960:CDS 30.0%
AACACTTAAAAAGGAACGTA+GGG - chr8_1:90095288-90095307 None:intergenic 30.0%
AACAGACAACTAAAAAGGAA+TGG + chr8_1:90095524-90095543 Msa1224960:intron 30.0%
GATATCACAGAAACTCTAAT+AGG + chr8_1:90095708-90095727 Msa1224960:intron 30.0%
TGAATGATGATTAATCTCAC+AGG + chr8_1:90095760-90095779 Msa1224960:intron 30.0%
!! GTCATTTCAATTTTTGGAAG+AGG - chr8_1:90095805-90095824 None:intergenic 30.0%
TGATAAAAACAGGAAACACA+AGG - chr8_1:90096096-90096115 None:intergenic 30.0%
!!! TGTTTCCTGTTTTTATCATC+TGG + chr8_1:90096098-90096117 Msa1224960:intron 30.0%
CACAAGATTTGAAAGTTTGA+AGG - chr8_1:90096143-90096162 None:intergenic 30.0%
! GTGAAACACATTTTATCATC+TGG + chr8_1:90096160-90096179 Msa1224960:intron 30.0%
AGTAGTTGTGCAATTACAAT+TGG + chr8_1:90096319-90096338 Msa1224960:intron 30.0%
!!! ACATTTTCAAGTGTACAGAA+TGG + chr8_1:90096428-90096447 Msa1224960:CDS 30.0%
! TTGGTTTCTTTTCTTTGTTG+CGG + chr8_1:90096487-90096506 Msa1224960:intron 30.0%
! ACACATATATTTGCCGTTTA+TGG + chr8_1:90096636-90096655 Msa1224960:CDS 30.0%
! CTCAATATCCTGAAGTTTTT+GGG - chr8_1:90096826-90096845 None:intergenic 30.0%
!! AGGCTCAAATTTTAAGAAAG+AGG + chr8_1:90096844-90096863 Msa1224960:CDS 30.0%
!!! ATTGCTTGAAGTTTGTTTTG+TGG + chr8_1:90096926-90096945 Msa1224960:intron 30.0%
TTCAGAAAAGGATCACATTA+AGG - chr8_1:90096953-90096972 None:intergenic 30.0%
TTTATAACTGTAGCATGTGT+TGG - chr8_1:90097050-90097069 None:intergenic 30.0%
GCATATAAAAGACCAAAACA+AGG - chr8_1:90097341-90097360 None:intergenic 30.0%
AAACAGGACATATTGAAAAC+AGG - chr8_1:90097428-90097447 None:intergenic 30.0%
!! CGTTTTGATATAATTTACCC+TGG + chr8_1:90097537-90097556 Msa1224960:intron 30.0%
ATTAAATGTGTTCTGCTCTT+CGG + chr8_1:90097567-90097586 Msa1224960:intron 30.0%
TCAGATAGTAAGGATAAATC+AGG + chr8_1:90097810-90097829 Msa1224960:CDS 30.0%
! CTACAATGTTTTCATTTGCT+TGG + chr8_1:90098001-90098020 Msa1224960:three_prime_UTR 30.0%
!! TGGTTGGTTAATTTGTTCAT+TGG + chr8_1:90098042-90098061 Msa1224960:three_prime_UTR 30.0%
AAGAACACAAGAAACTGGTT+TGG - chr8_1:90092417-90092436 None:intergenic 35.0%
CTACTGCTATTACTATGACA+TGG - chr8_1:90092670-90092689 None:intergenic 35.0%
!!! TTGAGCTTTTTTGAGGGTTT+GGG - chr8_1:90092697-90092716 None:intergenic 35.0%
!!! ATTGAGCTTTTTTGAGGGTT+TGG - chr8_1:90092698-90092717 None:intergenic 35.0%
!!! GGTAGAATTGAGCTTTTTTG+AGG - chr8_1:90092704-90092723 None:intergenic 35.0%
TCTATGGATCAAAAGATGGA+AGG + chr8_1:90092802-90092821 Msa1224960:exon 35.0%
AAACGCCTAAAACTTCGTAA+GGG - chr8_1:90092855-90092874 None:intergenic 35.0%
!!! AGCGGTTTTAATTTCCTGAT+CGG - chr8_1:90092890-90092909 None:intergenic 35.0%
! TGTAGAACCCTAGATTTTGA+AGG + chr8_1:90093065-90093084 Msa1224960:intron 35.0%
!! GTTGATGACCTTCAAAATCT+AGG - chr8_1:90093076-90093095 None:intergenic 35.0%
TTGCACTCAACAGAAACTTT+AGG + chr8_1:90093250-90093269 Msa1224960:intron 35.0%
CAGCATAATCGAATTACCTA+AGG + chr8_1:90093287-90093306 Msa1224960:intron 35.0%
! GGACAGGTTAATTAGGATTT+TGG - chr8_1:90093363-90093382 None:intergenic 35.0%
!! ACGTTTTGGACAGGTTAATT+AGG - chr8_1:90093370-90093389 None:intergenic 35.0%
!!! TGTTTTTTCACGTTTTGGAC+AGG - chr8_1:90093379-90093398 None:intergenic 35.0%
GCTTTCTTAAACTCATTCCA+AGG - chr8_1:90093466-90093485 None:intergenic 35.0%
AGAAAGCCCTTCAATTTGAA+TGG + chr8_1:90093479-90093498 Msa1224960:intron 35.0%
! GAATGGTTATGACTTTTGCT+TGG + chr8_1:90093496-90093515 Msa1224960:intron 35.0%
! ATGGTTATGACTTTTGCTTG+GGG + chr8_1:90093498-90093517 Msa1224960:intron 35.0%
ACTAGCTATGACTAATCAGA+GGG - chr8_1:90093610-90093629 None:intergenic 35.0%
AACTAGCTATGACTAATCAG+AGG - chr8_1:90093611-90093630 None:intergenic 35.0%
! TATCTCGCTATAGCTTTTCT+AGG + chr8_1:90093706-90093725 Msa1224960:intron 35.0%
! ATCTCGCTATAGCTTTTCTA+GGG + chr8_1:90093707-90093726 Msa1224960:intron 35.0%
GAGATCAGTGTTATCAATTG+TGG - chr8_1:90093754-90093773 None:intergenic 35.0%
!! TTGAATAGTTCTGAAGCTTC+AGG - chr8_1:90093819-90093838 None:intergenic 35.0%
AGCTTCAGAACTATTCAAAG+AGG + chr8_1:90093821-90093840 Msa1224960:CDS 35.0%
ATCGAAGAAAAGAAGAGCTT+TGG - chr8_1:90093946-90093965 None:intergenic 35.0%
! TGTTTTCATGCTGCTGAAAA+GGG - chr8_1:90093981-90094000 None:intergenic 35.0%
! TTGTTTTCATGCTGCTGAAA+AGG - chr8_1:90093982-90094001 None:intergenic 35.0%
!!! AAAGTTTTGGCTAATGGCAT+AGG + chr8_1:90094001-90094020 Msa1224960:intron 35.0%
! GTTTTCCAAGCTAGATAACT+TGG - chr8_1:90094035-90094054 None:intergenic 35.0%
AAAGCATAAGAAAAGCTTGC+AGG - chr8_1:90094154-90094173 None:intergenic 35.0%
ACATATACATCTCAGAAGAG+AGG + chr8_1:90094176-90094195 Msa1224960:intron 35.0%
AAATGCATGAATTGACCGAA+AGG - chr8_1:90094398-90094417 None:intergenic 35.0%
GCTGCTTGCATTAATGTAAA+TGG + chr8_1:90094473-90094492 Msa1224960:intron 35.0%
ATCAAGTGCCTGATATACAT+AGG - chr8_1:90094661-90094680 None:intergenic 35.0%
!! CAATGTTTGCAGCTTTATTC+AGG + chr8_1:90094733-90094752 Msa1224960:CDS 35.0%
! TTTATTTGGTAACAGCAAGC+TGG + chr8_1:90094823-90094842 Msa1224960:intron 35.0%
! TTATTTGGTAACAGCAAGCT+GGG + chr8_1:90094824-90094843 Msa1224960:intron 35.0%
TTCAAGAACATTAGCCGAAA+TGG - chr8_1:90094867-90094886 None:intergenic 35.0%
!! GTTCTTGAAGAAGCTTTGAA+TGG + chr8_1:90094878-90094897 Msa1224960:CDS 35.0%
GCAACAAATTGCCATATAAG+TGG - chr8_1:90095019-90095038 None:intergenic 35.0%
!! CTTATATGGCAATTTGTTGC+AGG + chr8_1:90095019-90095038 Msa1224960:intron 35.0%
AGTAACTCTTACTACAATCC+CGG - chr8_1:90095102-90095121 None:intergenic 35.0%
AACTGCACAAAGCAAATTCA+AGG + chr8_1:90095124-90095143 Msa1224960:CDS 35.0%
AGCCGGAATCATTGTAAAAA+AGG - chr8_1:90095161-90095180 None:intergenic 35.0%
TACAATGATTCCGGCTAATA+TGG + chr8_1:90095165-90095184 Msa1224960:intron 35.0%
CAGATTGTAATATTGAACGC+TGG + chr8_1:90095191-90095210 Msa1224960:intron 35.0%
ATTTCGAACAAGATGCAAAC+GGG + chr8_1:90095229-90095248 Msa1224960:CDS 35.0%
CAACACTTAAAAAGGAACGT+AGG - chr8_1:90095289-90095308 None:intergenic 35.0%
AGACAACTAAAAAGGAATGG+AGG + chr8_1:90095527-90095546 Msa1224960:intron 35.0%
GACAACTAAAAAGGAATGGA+GGG + chr8_1:90095528-90095547 Msa1224960:intron 35.0%
TGGTAAATCAACAAGTCGAA+GGG - chr8_1:90095592-90095611 None:intergenic 35.0%
TTGGTAAATCAACAAGTCGA+AGG - chr8_1:90095593-90095612 None:intergenic 35.0%
TTTGGAAGAGGTAAAACCAT+GGG - chr8_1:90095793-90095812 None:intergenic 35.0%
!! TTTTGGAAGAGGTAAAACCA+TGG - chr8_1:90095794-90095813 None:intergenic 35.0%
TAAAAGGGAAATGGAGATGA+GGG - chr8_1:90095938-90095957 None:intergenic 35.0%
AGACACAAGTAAAAGGGAAA+TGG - chr8_1:90095947-90095966 None:intergenic 35.0%
GCTACAAGACACAAGTAAAA+GGG - chr8_1:90095953-90095972 None:intergenic 35.0%
TGCTACAAGACACAAGTAAA+AGG - chr8_1:90095954-90095973 None:intergenic 35.0%
TAAATAACAATCCTTGCACG+TGG + chr8_1:90095997-90096016 Msa1224960:intron 35.0%
TAAAAATACAACCACGTGCA+AGG - chr8_1:90096011-90096030 None:intergenic 35.0%
CATAACAGCACGAATTTCTA+TGG + chr8_1:90096049-90096068 Msa1224960:intron 35.0%
GTCTATGCAATTGTCTATAC+AGG + chr8_1:90096356-90096375 Msa1224960:intron 35.0%
! AATGGATTCAACTGTGAATG+CGG + chr8_1:90096446-90096465 Msa1224960:CDS 35.0%
! TGGTTTCTTTTCTTTGTTGC+GGG + chr8_1:90096488-90096507 Msa1224960:intron 35.0%
! GCTTTCTTTAAAAGGTTGGA+AGG + chr8_1:90096576-90096595 Msa1224960:CDS 35.0%
TCTTCAACCTTGTGAAGTTT+CGG + chr8_1:90096599-90096618 Msa1224960:CDS 35.0%
! TTTAGTTCCGAAACTTCACA+AGG - chr8_1:90096609-90096628 None:intergenic 35.0%
!! AATATCCTGAAGTTTTTGGG+TGG - chr8_1:90096823-90096842 None:intergenic 35.0%
! CCTCAATATCCTGAAGTTTT+TGG - chr8_1:90096827-90096846 None:intergenic 35.0%
CCAAAAACTTCAGGATATTG+AGG + chr8_1:90096824-90096843 Msa1224960:CDS 35.0%
TAAGAAAGAGGAATGAGCTA+CGG + chr8_1:90096856-90096875 Msa1224960:CDS 35.0%
! TCCTTTTCTGAATACGTTTC+AGG + chr8_1:90096961-90096980 Msa1224960:intron 35.0%
! AAACAAGGATAAGCATCGTA+TGG - chr8_1:90097326-90097345 None:intergenic 35.0%
!! TACGATGCTTATCCTTGTTT+TGG + chr8_1:90097326-90097345 Msa1224960:intron 35.0%
CACATTTAATAGTAGTGCCA+GGG - chr8_1:90097557-90097576 None:intergenic 35.0%
ACACATTTAATAGTAGTGCC+AGG - chr8_1:90097558-90097577 None:intergenic 35.0%
!!! TGTTATTTTTCTGGTTACCC+AGG + chr8_1:90097629-90097648 Msa1224960:intron 35.0%
AGTGGCAGTAATTTAAGCAA+TGG + chr8_1:90097726-90097745 Msa1224960:CDS 35.0%
! GGAAGTTCTAGCAAAATTTC+TGG + chr8_1:90097747-90097766 Msa1224960:CDS 35.0%
!! ATTTCTGGTGAAGATTCCAA+AGG + chr8_1:90097762-90097781 Msa1224960:CDS 35.0%
ATGGTTCAACCTCAATCTTA+AGG + chr8_1:90097842-90097861 Msa1224960:CDS 35.0%
TGGTTCAACCTCAATCTTAA+GGG + chr8_1:90097843-90097862 Msa1224960:CDS 35.0%
TCGGAAAATTTGAGTCTCAT+TGG - chr8_1:90098127-90098146 None:intergenic 35.0%
ATATGTTGAGGATGCTACAA+GGG - chr8_1:90098152-90098171 None:intergenic 35.0%
TATATGTTGAGGATGCTACA+AGG - chr8_1:90098153-90098172 None:intergenic 35.0%
AGGCTTGATAAAGGAAAAGA+AGG - chr8_1:90098227-90098246 None:intergenic 35.0%
! TTTTCCTTTATCAAGCCTTG+CGG + chr8_1:90098229-90098248 Msa1224960:three_prime_UTR 35.0%
! TAGTAATATTTTGTGCCGCA+AGG - chr8_1:90098247-90098266 None:intergenic 35.0%
! ACCTCGGAATGTGTTTGTTA+GGG - chr8_1:90092522-90092541 None:intergenic 40.0%
TACCTCGGAATGTGTTTGTT+AGG - chr8_1:90092523-90092542 None:intergenic 40.0%
! GATTCAAAGTGGCATTGGAT+CGG - chr8_1:90092547-90092566 None:intergenic 40.0%
AAGGGAAAAGAGATTATGGG+TGG - chr8_1:90092575-90092594 None:intergenic 40.0%
TAAAGAGAAAGAGAGGCTTC+AGG + chr8_1:90092779-90092798 Msa1224960:five_prime_UTR 40.0%
CAGGTCTATGGATCAAAAGA+TGG + chr8_1:90092798-90092817 Msa1224960:exon 40.0%
GAAACGCCTAAAACTTCGTA+AGG - chr8_1:90092856-90092875 None:intergenic 40.0%
! GAGAGCAAGTTTTCTGTAAG+CGG - chr8_1:90092908-90092927 None:intergenic 40.0%
GGGTTCTACAGTTGTACTAA+TGG - chr8_1:90093055-90093074 None:intergenic 40.0%
!! ACTAAAGGTTGGTGCCTTTA+GGG - chr8_1:90093126-90093145 None:intergenic 40.0%
GGGTTGTGATGATTTGAATG+AGG - chr8_1:90093341-90093360 None:intergenic 40.0%
AATCAGAGGGTGAAAACTGA+TGG - chr8_1:90093597-90093616 None:intergenic 40.0%
GAAAAGCTATAGCGAGATAG+CGG - chr8_1:90093705-90093724 None:intergenic 40.0%
GATTGTTGGCATTCTTGTCA+GGG - chr8_1:90093797-90093816 None:intergenic 40.0%
!! TTCTGAAGCTTCAGGATTGT+TGG - chr8_1:90093811-90093830 None:intergenic 40.0%
TATCTGACCCAGAAAAGAGA+AGG + chr8_1:90093865-90093884 Msa1224960:CDS 40.0%
TGGATTCACATGGAAAGAAG+AGG - chr8_1:90093926-90093945 None:intergenic 40.0%
!! AGAAGAGCTTTGGATTCACA+TGG - chr8_1:90093936-90093955 None:intergenic 40.0%
CACTCAAATTCCAAGTTGCA+GGG - chr8_1:90094224-90094243 None:intergenic 40.0%
TCACTCAAATTCCAAGTTGC+AGG - chr8_1:90094225-90094244 None:intergenic 40.0%
!! TTTGCAGCTTTATTCAGGTG+TGG + chr8_1:90094738-90094757 Msa1224960:intron 40.0%
!! TTGCAGCTTTATTCAGGTGT+GGG + chr8_1:90094739-90094758 Msa1224960:intron 40.0%
! CCGAAATGGTAGTCTTGATT+GGG - chr8_1:90094853-90094872 None:intergenic 40.0%
CCCAATCAAGACTACCATTT+CGG + chr8_1:90094850-90094869 Msa1224960:CDS 40.0%
CAATCTGATGCCATATTAGC+CGG - chr8_1:90095178-90095197 None:intergenic 40.0%
TTTCGAACAAGATGCAAACG+GGG + chr8_1:90095230-90095249 Msa1224960:CDS 40.0%
!! GGAGTAAAAGAAGAAGCACT+AGG - chr8_1:90095562-90095581 None:intergenic 40.0%
TTGATACACTCACCATGAGT+AGG + chr8_1:90095636-90095655 Msa1224960:intron 40.0%
TTACAACCTCAACCTACTCA+TGG - chr8_1:90095651-90095670 None:intergenic 40.0%
GTAAAAGGGAAATGGAGATG+AGG - chr8_1:90095939-90095958 None:intergenic 40.0%
AACAGCACGAATTTCTATGG+TGG + chr8_1:90096052-90096071 Msa1224960:intron 40.0%
ATTCAACTGTGAATGCGGTA+TGG + chr8_1:90096451-90096470 Msa1224960:intron 40.0%
!!! AGTGGTCACTTTTAGTGTTG+TGG + chr8_1:90096521-90096540 Msa1224960:intron 40.0%
AGATACCACCCAAAAACTTC+AGG + chr8_1:90096815-90096834 Msa1224960:CDS 40.0%
GCCTGAAACGTATTCAGAAA+AGG - chr8_1:90096965-90096984 None:intergenic 40.0%
TCTGAATACGTTTCAGGCAT+TGG + chr8_1:90096967-90096986 Msa1224960:intron 40.0%
ACAACTTAATGGAGCAGATG+GGG - chr8_1:90097182-90097201 None:intergenic 40.0%
CACAACTTAATGGAGCAGAT+GGG - chr8_1:90097183-90097202 None:intergenic 40.0%
! TCTAGCTTGCCACAACTTAA+TGG - chr8_1:90097193-90097212 None:intergenic 40.0%
! AGTTGCAGATTTTTCTCACC+TGG + chr8_1:90097215-90097234 Msa1224960:intron 40.0%
! TTTTTCTCACCTGGCTTACT+TGG + chr8_1:90097224-90097243 Msa1224960:intron 40.0%
TCTGCAGAAATGGTGAAAAC+AGG - chr8_1:90097444-90097463 None:intergenic 40.0%
ACAGTGAGAATCTGCAGAAA+TGG - chr8_1:90097454-90097473 None:intergenic 40.0%
!! TAGATGAGCTTCTGAAGCAA+AGG + chr8_1:90097652-90097671 Msa1224960:CDS 40.0%
!! AGATGAGCTTCTGAAGCAAA+GGG + chr8_1:90097653-90097672 Msa1224960:CDS 40.0%
TGACAATGGTGAAGGTAGAA+TGG - chr8_1:90097686-90097705 None:intergenic 40.0%
AAGTTTGATCCCATGACTCA+TGG - chr8_1:90097945-90097964 None:intergenic 40.0%
ACTACACCCAATATATCCAC+GGG - chr8_1:90097975-90097994 None:intergenic 40.0%
CACTACACCCAATATATCCA+CGG - chr8_1:90097976-90097995 None:intergenic 40.0%
!! TTGGTTTGTGATGCAGTCAA+AGG + chr8_1:90098061-90098080 Msa1224960:three_prime_UTR 40.0%
! AAACCAAAGCAGCATTGGGA+TGG + chr8_1:90092286-90092305 Msa1224960:five_prime_UTR 45.0%
TGTAAGACCAAGTTGCGAGA+TGG - chr8_1:90092371-90092390 None:intergenic 45.0%
TCCCTAACAAACACATTCCG+AGG + chr8_1:90092518-90092537 Msa1224960:five_prime_UTR 45.0%
AAAGAGAGGCTTCAGGTCTA+TGG + chr8_1:90092786-90092805 Msa1224960:exon 45.0%
! CGTGACCCTTACGAAGTTTT+AGG + chr8_1:90092847-90092866 Msa1224960:CDS 45.0%
!!! CGAAGTTTTAGGCGTTTCCA+AGG + chr8_1:90092858-90092877 Msa1224960:CDS 45.0%
TTCCAAGGAATCATCCGATC+AGG + chr8_1:90092873-90092892 Msa1224960:CDS 45.0%
TTCCTGATCGGATGATTCCT+TGG - chr8_1:90092878-90092897 None:intergenic 45.0%
!! GACTAAAGGTTGGTGCCTTT+AGG - chr8_1:90093127-90093146 None:intergenic 45.0%
!! TATAGCGAGATAGCGGATAG+GGG - chr8_1:90093698-90093717 None:intergenic 45.0%
!! CTATAGCGAGATAGCGGATA+GGG - chr8_1:90093699-90093718 None:intergenic 45.0%
GGATTGTTGGCATTCTTGTC+AGG - chr8_1:90093798-90093817 None:intergenic 45.0%
! CGTACTGCCTTCTCTTTTCT+GGG - chr8_1:90093875-90093894 None:intergenic 45.0%
! TCGTACTGCCTTCTCTTTTC+TGG - chr8_1:90093876-90093895 None:intergenic 45.0%
TTCATGCTGCTGAAAAGGGA+GGG - chr8_1:90093977-90093996 None:intergenic 45.0%
TTTCATGCTGCTGAAAAGGG+AGG - chr8_1:90093978-90093997 None:intergenic 45.0%
TCAAATTCCAAGTTGCAGGG+AGG - chr8_1:90094221-90094240 None:intergenic 45.0%
GAAACGCAAAAGAGCTTTCG+AGG - chr8_1:90094580-90094599 None:intergenic 45.0%
TGATGCTGATAGCATGGACA+TGG + chr8_1:90094677-90094696 Msa1224960:CDS 45.0%
! GCCGAAATGGTAGTCTTGAT+TGG - chr8_1:90094854-90094873 None:intergenic 45.0%
ACAGATGTTCCCATTGGAAG+GGG - chr8_1:90094920-90094939 None:intergenic 45.0%
GACAGATGTTCCCATTGGAA+GGG - chr8_1:90094921-90094940 None:intergenic 45.0%
TGACAGATGTTCCCATTGGA+AGG - chr8_1:90094922-90094941 None:intergenic 45.0%
TTCGAACAAGATGCAAACGG+GGG + chr8_1:90095231-90095250 Msa1224960:CDS 45.0%
AACAAGTCGAAGGGAGATGA+GGG - chr8_1:90095583-90095602 None:intergenic 45.0%
! TTCAACTGCAGAAGCGTGAA+GGG - chr8_1:90095744-90095763 None:intergenic 45.0%
! ATTCAACTGCAGAAGCGTGA+AGG - chr8_1:90095745-90095764 None:intergenic 45.0%
! ACTGGCGTTTTCTTCAAGCA+TGG + chr8_1:90095840-90095859 Msa1224960:intron 45.0%
AACAGGAAACACAAGGCCAA+AGG - chr8_1:90096089-90096108 None:intergenic 45.0%
! TTTCTTTGTTGCGGGCTGTT+TGG + chr8_1:90096496-90096515 Msa1224960:intron 45.0%
!! CTTTTAAAGAAAGCCCCCTC+AGG - chr8_1:90096570-90096589 None:intergenic 45.0%
CTGAGGGGGCTTTCTTTAAA+AGG + chr8_1:90096568-90096587 Msa1224960:CDS 45.0%
! GGGGGCTTTCTTTAAAAGGT+TGG + chr8_1:90096572-90096591 Msa1224960:CDS 45.0%
GAAGTTTCGGAACTAAAGCC+TGG + chr8_1:90096612-90096631 Msa1224960:CDS 45.0%
ACGGCAAATATATGTGTGCC+AGG - chr8_1:90096633-90096652 None:intergenic 45.0%
TGATGATCAGCTATGCTGTG+GGG - chr8_1:90097149-90097168 None:intergenic 45.0%
CTGATGATCAGCTATGCTGT+GGG - chr8_1:90097150-90097169 None:intergenic 45.0%
ACTGATGATCAGCTATGCTG+TGG - chr8_1:90097151-90097170 None:intergenic 45.0%
CCACAACTTAATGGAGCAGA+TGG - chr8_1:90097184-90097203 None:intergenic 45.0%
! CCATCTGCTCCATTAAGTTG+TGG + chr8_1:90097181-90097200 Msa1224960:intron 45.0%
CTTCAGAAGCTCATCTACCT+GGG - chr8_1:90097649-90097668 None:intergenic 45.0%
!! AGTACTGGTTGGCTTGACAA+TGG - chr8_1:90097700-90097719 None:intergenic 45.0%
AGATGGAGGGTCAGATAGTA+AGG + chr8_1:90097800-90097819 Msa1224960:CDS 45.0%
CAACCTCAATCTTAAGGGCT+CGG + chr8_1:90097848-90097867 Msa1224960:CDS 45.0%
AACCTCAATCTTAAGGGCTC+GGG + chr8_1:90097849-90097868 Msa1224960:CDS 45.0%
CTTGAGTGACCATGAGTCAT+GGG + chr8_1:90097933-90097952 Msa1224960:three_prime_UTR 45.0%
ATCAAACTTAAAGCAGCCCG+TGG + chr8_1:90097956-90097975 Msa1224960:three_prime_UTR 45.0%
AAAGCAGCCCGTGGATATAT+TGG + chr8_1:90097965-90097984 Msa1224960:three_prime_UTR 45.0%
AAGCAGCCCGTGGATATATT+GGG + chr8_1:90097966-90097985 Msa1224960:three_prime_UTR 45.0%
GGTTCCTCAAAGTTGTGAAC+TGG + chr8_1:90098022-90098041 Msa1224960:three_prime_UTR 45.0%
CCAACCAGTTCACAACTTTG+AGG - chr8_1:90098029-90098048 None:intergenic 45.0%
CCTCAAAGTTGTGAACTGGT+TGG + chr8_1:90098026-90098045 Msa1224960:three_prime_UTR 45.0%
TGAGGATGCTACAAGGGAAT+CGG - chr8_1:90098146-90098165 None:intergenic 45.0%
!! AGTAAAAAAAAAAAAAAAAA+AGG + chr8_1:90092342-90092361 Msa1224960:five_prime_UTR 5.0%
! GGTTTGGTTTCGCTAGAGTC+AGG - chr8_1:90092401-90092420 None:intergenic 50.0%
! TGGCATTGGATCGGTTACCT+CGG - chr8_1:90092538-90092557 None:intergenic 50.0%
CACGCGATTCAAAGTGGCAT+TGG - chr8_1:90092552-90092571 None:intergenic 50.0%
TAAGGGTCACGTCGAATTGC+TGG - chr8_1:90092838-90092857 None:intergenic 50.0%
ACCCTAATCCCTCTCCCTAA+AGG + chr8_1:90093109-90093128 Msa1224960:intron 50.0%
! GCCTTTAGGGAGAGGGATTA+GGG - chr8_1:90093113-90093132 None:intergenic 50.0%
! TGCCTTTAGGGAGAGGGATT+AGG - chr8_1:90093114-90093133 None:intergenic 50.0%
ATCTTGTCAGGGGCAACCTT+AGG - chr8_1:90093306-90093325 None:intergenic 50.0%
CTGTTGCTAGAGTAGCACCT+TGG + chr8_1:90093446-90093465 Msa1224960:intron 50.0%
AGAGGGTGAAAACTGATGGC+AGG - chr8_1:90093593-90093612 None:intergenic 50.0%
!! ATAGCGAGATAGCGGATAGG+GGG - chr8_1:90093697-90093716 None:intergenic 50.0%
!! GCTATAGCGAGATAGCGGAT+AGG - chr8_1:90093700-90093719 None:intergenic 50.0%
!!! CGCTATAGCTTTTCTAGGGC+CGG + chr8_1:90093711-90093730 Msa1224960:intron 50.0%
GGATAGCAGAGCATAGTGTC+CGG - chr8_1:90093733-90093752 None:intergenic 50.0%
GTACGACAGTGCAGGATTTG+AGG + chr8_1:90093890-90093909 Msa1224960:CDS 50.0%
ATGGCAAGCTCCCCAGAAAA+GGG - chr8_1:90094095-90094114 None:intergenic 50.0%
CATATTGCCTCCCTGCAACT+TGG + chr8_1:90094211-90094230 Msa1224960:intron 50.0%
GGCACTTGATGCTGATAGCA+TGG + chr8_1:90094671-90094690 Msa1224960:intron 50.0%
TACAGTCAGACCCCTTCCAA+TGG + chr8_1:90094907-90094926 Msa1224960:CDS 50.0%
ACAGTCAGACCCCTTCCAAT+GGG + chr8_1:90094908-90094927 Msa1224960:CDS 50.0%
CCACTGACAGATGTTCCCAT+TGG - chr8_1:90094926-90094945 None:intergenic 50.0%
CCAATGGGAACATCTGTCAG+TGG + chr8_1:90094923-90094942 Msa1224960:CDS 50.0%
GGGAACATCTGTCAGTGGAA+AGG + chr8_1:90094928-90094947 Msa1224960:CDS 50.0%
AATGAGCAGCAAGCTGAGTC+CGG + chr8_1:90095080-90095099 Msa1224960:CDS 50.0%
GGGCTATGGTTTAGCATTGC+AGG + chr8_1:90095251-90095270 Msa1224960:CDS 50.0%
CAACAAGTCGAAGGGAGATG+AGG - chr8_1:90095584-90095603 None:intergenic 50.0%
CACTCACCATGAGTAGGTTG+AGG + chr8_1:90095642-90095661 Msa1224960:intron 50.0%
TCTCACAGGCAGATATCCCA+TGG + chr8_1:90095774-90095793 Msa1224960:intron 50.0%
GAAATGGAGATGAGGGTGGA+GGG - chr8_1:90095931-90095950 None:intergenic 50.0%
AAGGGAAATGGAGATGAGGG+TGG - chr8_1:90095935-90095954 None:intergenic 50.0%
GGTGGCTGCTAATAAGCCTT+TGG + chr8_1:90096070-90096089 Msa1224960:intron 50.0%
CAGGAAGATAGCGAGAAGAC+TGG + chr8_1:90096375-90096394 Msa1224960:intron 50.0%
ACTGGCAAAGTGACATCTGC+TGG + chr8_1:90096393-90096412 Msa1224960:CDS 50.0%
TGTTGTGGTGCAGTTAGCGA+TGG + chr8_1:90096536-90096555 Msa1224960:intron 50.0%
GCTTCAGAAGCTCATCTACC+TGG - chr8_1:90097650-90097669 None:intergenic 50.0%
!! GAGCTTCTGAAGCAAAGGGA+CGG + chr8_1:90097657-90097676 Msa1224960:CDS 50.0%
!! GGTTGGCTTGACAATGGTGA+AGG - chr8_1:90097694-90097713 None:intergenic 50.0%
GTCAAGCCAACCAGTACTAG+TGG + chr8_1:90097702-90097721 Msa1224960:CDS 50.0%
!! CCACTTCCACTAGTACTGGT+TGG - chr8_1:90097711-90097730 None:intergenic 50.0%
CCAACCAGTACTAGTGGAAG+TGG + chr8_1:90097708-90097727 Msa1224960:CDS 50.0%
! ACTGCCACTTCCACTAGTAC+TGG - chr8_1:90097715-90097734 None:intergenic 50.0%
ATTCCAAAGGTGAGAGCCCT+GGG + chr8_1:90097775-90097794 Msa1224960:CDS 50.0%
AACCCGAGCCCTTAAGATTG+AGG - chr8_1:90097854-90097873 None:intergenic 50.0%
GCTTGAGTGACCATGAGTCA+TGG + chr8_1:90097932-90097951 Msa1224960:three_prime_UTR 50.0%
TGTGCCGCAAGGCTTGATAA+AGG - chr8_1:90098236-90098255 None:intergenic 50.0%
! TGGCCATCCCAATGCTGCTT+TGG - chr8_1:90092292-90092311 None:intergenic 55.0%
AAGGACGCCATCTCGCAACT+TGG + chr8_1:90092361-90092380 Msa1224960:five_prime_UTR 55.0%
! GGTTGGTGCCTTTAGGGAGA+GGG - chr8_1:90093120-90093139 None:intergenic 55.0%
!! AGGTTGGTGCCTTTAGGGAG+AGG - chr8_1:90093121-90093140 None:intergenic 55.0%
AGAAGGCAGTACGACAGTGC+AGG + chr8_1:90093882-90093901 Msa1224960:CDS 55.0%
GATGGCAAGCTCCCCAGAAA+AGG - chr8_1:90094096-90094115 None:intergenic 55.0%
ATGAGCAGCAAGCTGAGTCC+GGG + chr8_1:90095081-90095100 Msa1224960:CDS 55.0%
CAAGATGCAAACGGGGGCTA+TGG + chr8_1:90095237-90095256 Msa1224960:CDS 55.0%
TGTAAGCAGTCCCAACCACC+TGG + chr8_1:90095666-90095685 Msa1224960:intron 55.0%
GTAAGCAGTCCCAACCACCT+GGG + chr8_1:90095667-90095686 Msa1224960:intron 55.0%
TAAGCAGTCCCAACCACCTG+GGG + chr8_1:90095668-90095687 Msa1224960:intron 55.0%
GGAAATGGAGATGAGGGTGG+AGG - chr8_1:90095932-90095951 None:intergenic 55.0%
! GTTGCGGGCTGTTTGGAAAG+TGG + chr8_1:90096503-90096522 Msa1224960:intron 55.0%
!! TCAGGCATTGGCACGCTATC+AGG + chr8_1:90096979-90096998 Msa1224960:intron 55.0%
ATCGGCAAGCCAAGTAAGCC+AGG - chr8_1:90097236-90097255 None:intergenic 55.0%
GATTCCAAAGGTGAGAGCCC+TGG + chr8_1:90097774-90097793 Msa1224960:CDS 55.0%
TTCCAAAGGTGAGAGCCCTG+GGG + chr8_1:90097776-90097795 Msa1224960:CDS 55.0%
GGGTGGCACGCGATTCAAAG+TGG - chr8_1:90092558-90092577 None:intergenic 60.0%
!! CGAGATAGCGGATAGGGGGA+TGG - chr8_1:90093693-90093712 None:intergenic 60.0%
TGTTCTCGCCCCAGGTGGTT+GGG - chr8_1:90095679-90095698 None:intergenic 60.0%
ATGTTCTCGCCCCAGGTGGT+TGG - chr8_1:90095680-90095699 None:intergenic 60.0%
AACCACCTGGGGCGAGAACA+TGG + chr8_1:90095679-90095698 Msa1224960:intron 60.0%
ACCACCTGGGGCGAGAACAT+GGG + chr8_1:90095680-90095699 Msa1224960:intron 60.0%
TGGAGATGAGGGTGGAGGGA+GGG - chr8_1:90095927-90095946 None:intergenic 60.0%
ATGGAGATGAGGGTGGAGGG+AGG - chr8_1:90095928-90095947 None:intergenic 60.0%
GGTGCAGTTAGCGATGGCCA+AGG + chr8_1:90096542-90096561 Msa1224960:intron 60.0%
AGCGATGGCCAAGGATCCTG+AGG + chr8_1:90096551-90096570 Msa1224960:CDS 60.0%
GCGATGGCCAAGGATCCTGA+GGG + chr8_1:90096552-90096571 Msa1224960:CDS 60.0%
CGATGGCCAAGGATCCTGAG+GGG + chr8_1:90096553-90096572 Msa1224960:CDS 60.0%
GATGGCCAAGGATCCTGAGG+GGG + chr8_1:90096554-90096573 Msa1224960:CDS 60.0%
GAAAGCCCCCTCAGGATCCT+TGG - chr8_1:90096562-90096581 None:intergenic 60.0%
TTCCCCAGGGCTCTCACCTT+TGG - chr8_1:90097781-90097800 None:intergenic 60.0%
AGAGCCCTGGGGAAGATGGA+GGG + chr8_1:90097787-90097806 Msa1224960:CDS 60.0%
CTGACCCTCCATCTTCCCCA+GGG - chr8_1:90097794-90097813 None:intergenic 60.0%
TCTGACCCTCCATCTTCCCC+AGG - chr8_1:90097795-90097814 None:intergenic 60.0%
TCCCATGTTCTCGCCCCAGG+TGG - chr8_1:90095684-90095703 None:intergenic 65.0%
GAGTCCCATGTTCTCGCCCC+AGG - chr8_1:90095687-90095706 None:intergenic 65.0%
GGTGAGAGCCCTGGGGAAGA+TGG + chr8_1:90097783-90097802 Msa1224960:CDS 65.0%
GAGAGCCCTGGGGAAGATGG+AGG + chr8_1:90097786-90097805 Msa1224960:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 90092264 90098297 90092264 ID=Msa1224960;Name=Msa1224960
chr8_1 mRNA 90092264 90098297 90092264 ID=Msa1224960-mRNA-1;Parent=Msa1224960;Name=Msa1224960-mRNA-1;_AED=0.11;_eAED=0.11;_QI=341|1|1|1|0.90|0.83|12|404|414
chr8_1 exon 90092264 90092539 90092264 ID=Msa1224960-mRNA-1:exon:32751;Parent=Msa1224960-mRNA-1
chr8_1 exon 90092740 90092929 90092740 ID=Msa1224960-mRNA-1:exon:32752;Parent=Msa1224960-mRNA-1
chr8_1 exon 90093788 90093911 90093788 ID=Msa1224960-mRNA-1:exon:32753;Parent=Msa1224960-mRNA-1
chr8_1 exon 90094672 90094754 90094672 ID=Msa1224960-mRNA-1:exon:32754;Parent=Msa1224960-mRNA-1
chr8_1 exon 90094838 90094949 90094838 ID=Msa1224960-mRNA-1:exon:32755;Parent=Msa1224960-mRNA-1
chr8_1 exon 90095041 90095145 90095041 ID=Msa1224960-mRNA-1:exon:32756;Parent=Msa1224960-mRNA-1
chr8_1 exon 90095222 90095272 90095222 ID=Msa1224960-mRNA-1:exon:32757;Parent=Msa1224960-mRNA-1
chr8_1 exon 90096378 90096467 90096378 ID=Msa1224960-mRNA-1:exon:32758;Parent=Msa1224960-mRNA-1
chr8_1 exon 90096549 90096657 90096549 ID=Msa1224960-mRNA-1:exon:32759;Parent=Msa1224960-mRNA-1
chr8_1 exon 90096754 90096902 90096754 ID=Msa1224960-mRNA-1:exon:32760;Parent=Msa1224960-mRNA-1
chr8_1 exon 90096983 90097036 90096983 ID=Msa1224960-mRNA-1:exon:32761;Parent=Msa1224960-mRNA-1
chr8_1 exon 90097651 90098297 90097651 ID=Msa1224960-mRNA-1:exon:32762;Parent=Msa1224960-mRNA-1
chr8_1 five_prime_UTR 90092264 90092539 90092264 ID=Msa1224960-mRNA-1:five_prime_utr;Parent=Msa1224960-mRNA-1
chr8_1 five_prime_UTR 90092740 90092804 90092740 ID=Msa1224960-mRNA-1:five_prime_utr;Parent=Msa1224960-mRNA-1
chr8_1 CDS 90092805 90092929 90092805 ID=Msa1224960-mRNA-1:cds;Parent=Msa1224960-mRNA-1
chr8_1 CDS 90093788 90093911 90093788 ID=Msa1224960-mRNA-1:cds;Parent=Msa1224960-mRNA-1
chr8_1 CDS 90094672 90094754 90094672 ID=Msa1224960-mRNA-1:cds;Parent=Msa1224960-mRNA-1
chr8_1 CDS 90094838 90094949 90094838 ID=Msa1224960-mRNA-1:cds;Parent=Msa1224960-mRNA-1
chr8_1 CDS 90095041 90095145 90095041 ID=Msa1224960-mRNA-1:cds;Parent=Msa1224960-mRNA-1
chr8_1 CDS 90095222 90095272 90095222 ID=Msa1224960-mRNA-1:cds;Parent=Msa1224960-mRNA-1
chr8_1 CDS 90096378 90096467 90096378 ID=Msa1224960-mRNA-1:cds;Parent=Msa1224960-mRNA-1
chr8_1 CDS 90096549 90096657 90096549 ID=Msa1224960-mRNA-1:cds;Parent=Msa1224960-mRNA-1
chr8_1 CDS 90096754 90096902 90096754 ID=Msa1224960-mRNA-1:cds;Parent=Msa1224960-mRNA-1
chr8_1 CDS 90096983 90097036 90096983 ID=Msa1224960-mRNA-1:cds;Parent=Msa1224960-mRNA-1
chr8_1 CDS 90097651 90097893 90097651 ID=Msa1224960-mRNA-1:cds;Parent=Msa1224960-mRNA-1
chr8_1 three_prime_UTR 90097894 90098297 90097894 ID=Msa1224960-mRNA-1:three_prime_utr;Parent=Msa1224960-mRNA-1
Gene Sequence

>Msa1224960

ATGGATCAAAAGATGGAAGGAACATCTGCACCAGCAATTCGACGTGACCCTTACGAAGTTTTAGGCGTTTCCAAGGAATCATCCGATCAGGAAATTAAAACCGCTTACAGAAAACTTGCTCTCAAGTATCACCCTGACAAGAATGCCAACAATCCTGAAGCTTCAGAACTATTCAAAGAGGTTGCATATTCTTATAATATCTTATCTGACCCAGAAAAGAGAAGGCAGTACGACAGTGCAGGATTTGAGGCACTTGATGCTGATAGCATGGACATGGAAATCGATTTATCTAATCTTGGGACTGTGAACACAATGTTTGCAGCTTTATTCAGCAAGCTGGGTGTCCCAATCAAGACTACCATTTCGGCTAATGTTCTTGAAGAAGCTTTGAATGGCACTGTTACAGTCAGACCCCTTCCAATGGGAACATCTGTCAGTGGAAAGGTAGAGAAGCAATGTGCTCATTTTTTTGGTGTGACAATAAATGAGCAGCAAGCTGAGTCCGGGATTGTAGTAAGAGTTACTTCAACTGCACAAAGCAAATTCAAGTTGCTCTATTTCGAACAAGATGCAAACGGGGGCTATGGTTTAGCATTGCAGGAAGATAGCGAGAAGACTGGCAAAGTGACATCTGCTGGAATGTATTTCTTACATTTTCAAGTGTACAGAATGGATTCAACTGTGAATGCGTTAGCGATGGCCAAGGATCCTGAGGGGGCTTTCTTTAAAAGGTTGGAAGGTCTTCAACCTTGTGAAGTTTCGGAACTAAAGCCTGGCACACATATATTTGCCGTTTATGGCGATAACTTCTTTAAGACTGCTAGCTATACAATTGAAGCAGTATGTGCAAAATCACATGAAGATACCACCCAAAAACTTCAGGATATTGAGGCTCAAATTTTAAGAAAGAGGAATGAGCTACGGCAATTCGAATCAGAATATAGAAAGGCATTGGCACGCTATCAGGAAGTGACAGACAGATACACAAAAGAAAAACAGTCTGTAGATGAGCTTCTGAAGCAAAGGGACGGTATCCATTCTACCTTCACCATTGTCAAGCCAACCAGTACTAGTGGAAGTGGCAGTAATTTAAGCAATGGAAGTTCTAGCAAAATTTCTGGTGAAGATTCCAAAGGTGAGAGCCCTGGGGAAGATGGAGGGTCAGATAGTAAGGATAAATCAGGCAAAAAGAAATGGTTCAACCTCAATCTTAAGGGCTCGGGTTCTGATAAGAAGTTGATTTAA
Protein sequence

>Msa1224960

MDQKMEGTSAPAIRRDPYEVLGVSKESSDQEIKTAYRKLALKYHPDKNANNPEASELFKEVAYSYNILSDPEKRRQYDSAGFEALDADSMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPMGTSVSGKVEKQCAHFFGVTINEQQAESGIVVRVTSTAQSKFKLLYFEQDANGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEGAFFKRLEGLQPCEVSELKPGTHIFAVYGDNFFKTASYTIEAVCAKSHEDTTQKLQDIEAQILRKRNELRQFESEYRKALARYQEVTDRYTKEKQSVDELLKQRDGIHSTFTIVKPTSTSGSGSNLSNGSSSKISGEDSKGESPGEDGGSDSKDKSGKKKWFNLNLKGSGSDKKLI*