AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0043500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0043500 MtrunA17_Chr1g0209551 100.000 414 0 0 1 414 1 414 0.0 857
Msa0043500 MtrunA17_Chr5g0414471 61.461 397 138 3 13 405 22 407 0.0 514
Msa0043500 MtrunA17_Chr7g0269841 58.824 68 28 0 18 85 28 95 2.61e-17 82.8
Msa0043500 MtrunA17_Chr4g0010781 52.055 73 35 0 12 84 82 154 2.41e-16 80.5
Msa0043500 MtrunA17_Chr3g0087741 50.649 77 37 1 9 85 83 158 2.85e-16 80.5
Msa0043500 MtrunA17_Chr6g0478651 46.078 102 44 3 15 112 67 161 7.04e-16 79.3
Msa0043500 MtrunA17_Chr3g0123861 58.571 70 28 1 16 85 82 150 1.99e-15 77.8
Msa0043500 MtrunA17_Chr3g0088221 62.500 56 21 0 106 161 22 77 5.14e-15 70.1
Msa0043500 MtrunA17_Chr4g0006391 49.296 71 35 1 16 85 4 74 8.22e-15 75.1
Msa0043500 MtrunA17_Chr7g0271891 43.836 73 37 1 18 86 18 90 8.75e-15 72.0
Msa0043500 MtrunA17_Chr2g0282741 49.296 71 35 1 16 85 4 74 1.59e-14 74.3
Msa0043500 MtrunA17_Chr4g0040501 49.296 71 35 1 16 85 4 74 1.90e-14 74.3
Msa0043500 MtrunA17_Chr2g0282761 52.239 67 31 1 16 81 4 70 2.65e-14 73.6
Msa0043500 MtrunA17_Chr3g0138471 47.887 71 36 1 16 85 4 74 2.77e-14 73.6
Msa0043500 MtrunA17_Chr7g0258061 43.750 96 47 3 18 113 24 112 3.76e-14 72.4
Msa0043500 MtrunA17_Chr7g0263971 51.515 66 31 1 14 78 367 432 4.83e-14 73.6
Msa0043500 MtrunA17_Chr4g0021141 43.284 67 38 0 15 81 21 87 5.30e-14 68.9
Msa0043500 MtrunA17_Chr2g0328581 55.556 63 27 1 17 79 76 137 5.65e-14 70.5
Msa0043500 MtrunA17_Chr8g0334811 52.941 68 28 1 18 85 16 79 6.17e-14 73.2
Msa0043500 MtrunA17_Chr5g0399201 48.684 76 36 1 15 87 11 86 1.10e-13 72.8
Msa0043500 MtrunA17_Chr7g0242951 48.684 76 31 2 16 84 27 101 4.42e-13 70.9
Msa0043500 MtrunA17_Chr2g0324921 47.887 71 36 1 16 85 4 74 5.16e-13 69.7
Msa0043500 MtrunA17_Chr5g0427221 31.776 107 65 1 15 121 47 145 6.42e-13 65.9
Msa0043500 MtrunA17_Chr5g0393371 40.860 93 46 2 18 110 8 91 8.41e-13 69.7
Msa0043500 MtrunA17_Chr4g0061421 43.373 83 43 1 10 88 2 84 1.78e-12 69.3
Msa0043500 MtrunA17_Chr1g0173931 40.625 96 51 2 18 113 40 129 3.10e-12 67.0
Msa0043500 MtrunA17_Chr2g0333221 48.571 70 35 1 12 81 66 134 3.12e-12 68.2
Msa0043500 MtrunA17_Chr8g0344721 41.558 77 39 1 16 86 10 86 5.19e-12 65.5
Msa0043500 MtrunA17_Chr8g0352451 45.205 73 40 0 18 90 74 146 9.68e-12 66.2
Msa0043500 MtrunA17_Chr8g0371891 47.059 68 34 1 18 83 49 116 1.14e-11 62.4
Msa0043500 MtrunA17_Chr1g0159491 42.188 64 37 0 18 81 8 71 1.65e-11 60.1
Msa0043500 MtrunA17_Chr5g0426951 46.875 64 34 0 15 78 82 145 1.76e-11 65.9
Msa0043500 MtrunA17_Chr1g0206121 47.692 65 33 1 16 80 35 98 1.89e-11 64.7
Msa0043500 MtrunA17_Chr1g0159511 39.726 73 44 0 18 90 8 80 2.02e-11 65.1
Msa0043500 MtrunA17_Chr4g0044331 43.939 66 33 1 22 83 18 83 2.71e-11 61.6
Msa0043500 MtrunA17_Chr2g0295821 47.761 67 34 1 16 82 104 169 5.46e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0043500 AT1G68370.1 84.019 413 57 4 3 413 4 409 0.0 719
Msa0043500 AT1G24120.1 57.590 415 152 2 13 405 17 429 1.50e-177 502
Msa0043500 AT1G59980.1 52.618 401 179 3 14 412 21 412 5.67e-149 429
Msa0043500 AT1G59980.2 55.952 336 147 1 14 349 21 355 1.03e-137 398
Msa0043500 AT1G59980.3 51.117 358 164 3 57 412 1 349 7.29e-124 363
Msa0043500 AT3G62600.1 57.353 68 29 0 18 85 28 95 6.21e-16 79.0
Msa0043500 AT5G01390.3 51.389 72 34 1 16 86 4 75 8.06e-16 77.0
Msa0043500 AT5G01390.4 51.389 72 34 1 16 86 4 75 1.02e-15 76.6
Msa0043500 AT5G01390.2 51.389 72 34 1 16 86 4 75 1.40e-15 77.0
Msa0043500 AT2G20560.1 50.704 71 34 1 16 85 4 74 1.67e-15 77.8
Msa0043500 AT4G28480.2 50.704 71 34 1 16 85 4 74 1.78e-15 77.0
Msa0043500 AT5G01390.1 51.389 72 34 1 16 86 4 75 2.66e-15 77.0
Msa0043500 AT4G28480.1 50.704 71 34 1 16 85 4 74 2.92e-15 77.0
Msa0043500 AT3G08910.1 50.704 71 34 1 16 85 4 74 3.83e-15 76.3
Msa0043500 AT5G48030.1 50.667 75 37 0 15 89 93 167 5.21e-15 77.0
Msa0043500 AT2G22360.1 49.398 83 41 1 16 98 86 167 4.75e-14 73.9
Msa0043500 AT5G03160.1 51.515 66 31 1 14 78 368 433 5.23e-14 73.9
Msa0043500 AT1G74250.1 44.828 87 43 1 7 88 2 88 6.95e-14 73.9
Msa0043500 AT2G21510.3 46.575 73 39 0 18 90 8 80 6.98e-14 72.8
Msa0043500 AT2G21510.1 46.575 73 39 0 18 90 8 80 6.98e-14 72.8
Msa0043500 AT2G21510.2 46.575 73 39 0 18 90 8 80 7.06e-14 72.8
Msa0043500 AT2G21510.4 46.575 73 39 0 18 90 8 80 7.06e-14 72.8
Msa0043500 AT3G17830.1 49.315 73 36 1 16 88 63 134 8.08e-14 73.6
Msa0043500 AT5G16650.1 44.118 68 38 0 15 82 10 77 8.15e-14 68.6
Msa0043500 AT1G56300.1 44.286 70 35 1 13 78 10 79 8.32e-14 69.3
Msa0043500 AT2G21510.5 46.575 73 39 0 18 90 8 80 8.40e-14 72.4
Msa0043500 AT3G08970.1 54.412 68 30 1 16 83 27 93 9.16e-14 73.6
Msa0043500 AT3G08970.2 54.412 68 30 1 16 83 27 93 9.16e-14 73.6
Msa0043500 AT5G16650.2 44.776 67 37 0 15 81 10 76 1.11e-13 69.3
Msa0043500 AT1G56300.2 44.286 70 35 1 13 78 10 79 1.22e-13 67.8
Msa0043500 AT5G25530.2 46.479 71 37 1 16 85 4 74 1.45e-13 72.0
Msa0043500 AT4G39960.1 49.398 83 41 1 16 98 85 166 1.49e-13 72.4
Msa0043500 AT4G39960.2 49.398 83 41 1 16 98 85 166 1.49e-13 72.4
Msa0043500 AT1G80030.2 53.030 66 30 1 16 81 75 139 2.07e-13 72.4
Msa0043500 AT1G80030.3 53.030 66 30 1 16 81 75 139 2.07e-13 72.4
Msa0043500 AT1G80030.1 53.030 66 30 1 16 81 75 139 2.07e-13 72.4
Msa0043500 AT1G80030.4 53.030 66 30 1 16 81 75 139 2.30e-13 72.0
Msa0043500 AT1G71000.2 31.818 132 76 4 5 126 1 128 2.66e-13 68.2
Msa0043500 AT3G12170.1 40.625 96 51 2 18 113 13 102 3.33e-13 69.7
Msa0043500 AT5G06910.1 51.562 64 31 0 18 81 31 94 3.60e-13 70.1
Msa0043500 AT3G12170.2 40.625 96 51 2 18 113 49 138 5.05e-13 69.7
Msa0043500 AT2G41000.2 44.928 69 33 1 16 79 3 71 5.26e-13 68.2
Msa0043500 AT2G41000.1 44.928 69 33 1 16 79 3 71 1.07e-12 66.6
Msa0043500 AT4G39150.3 43.836 73 41 0 18 90 8 80 1.84e-12 68.6
Msa0043500 AT4G39150.1 43.836 73 41 0 18 90 8 80 1.84e-12 68.6
Msa0043500 AT4G39150.2 43.836 73 41 0 18 90 8 80 1.84e-12 68.6
Msa0043500 AT5G59610.2 50.000 66 32 1 14 79 71 135 1.98e-12 67.4
Msa0043500 AT1G59725.1 43.243 74 40 1 16 87 4 77 2.28e-12 68.2
Msa0043500 AT1G10350.1 42.254 71 40 1 16 85 4 74 2.50e-12 68.2
Msa0043500 AT1G21080.3 41.892 74 43 0 18 91 8 81 2.55e-12 68.6
Msa0043500 AT1G21080.1 41.892 74 43 0 18 91 8 81 2.60e-12 68.6
Msa0043500 AT5G59610.1 50.000 66 32 1 14 79 71 135 4.00e-12 66.6
Msa0043500 AT5G59610.4 50.000 66 32 1 14 79 71 135 4.00e-12 66.6
Msa0043500 AT5G59610.3 50.000 66 32 1 14 79 71 135 4.06e-12 66.6
Msa0043500 AT5G59610.5 50.000 66 32 1 14 79 71 135 4.06e-12 66.6
Msa0043500 AT2G33735.1 42.188 64 37 0 15 78 21 84 4.40e-12 63.2
Msa0043500 AT2G33735.2 42.188 64 37 0 15 78 21 84 4.40e-12 63.2
Msa0043500 AT1G28210.3 41.667 72 42 0 15 86 47 118 5.34e-12 67.4
Msa0043500 AT1G28210.1 41.667 72 42 0 15 86 47 118 5.55e-12 67.4
Msa0043500 AT1G28210.2 41.667 72 42 0 15 86 47 118 5.91e-12 67.4
Msa0043500 AT5G49060.2 49.254 67 33 1 16 82 99 164 1.67e-11 65.9
Msa0043500 AT5G49060.1 49.254 67 33 1 16 82 99 164 1.67e-11 65.9
Msa0043500 AT1G71000.1 39.286 84 43 2 5 84 1 80 1.78e-11 62.8
Msa0043500 AT1G76700.1 38.710 93 48 2 18 110 8 91 2.02e-11 65.9
Msa0043500 AT2G35720.1 41.758 91 46 3 1 87 2 89 2.59e-11 65.9
Msa0043500 AT5G25530.1 41.772 79 37 2 16 85 4 82 3.20e-11 64.7
Msa0043500 AT4G21180.2 44.776 67 35 2 16 81 19 84 5.09e-11 65.1
Msa0043500 AT4G21180.1 44.776 67 35 2 16 81 99 164 5.21e-11 65.1
Msa0043500 AT3G14200.1 35.052 97 60 1 5 98 1 97 7.37e-11 62.4

Find 129 sgRNAs with CRISPR-Local

Find 405 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACATATATTTGCCGTTTA+TGG 0.136662 1_1:+74631719 Msa0043500:CDS
GGAAGTTCTAGCAAAATTTC+TGG 0.196708 1_1:+74632825 Msa0043500:CDS
CAATGTTTGCAGCTTTATTC+AGG 0.268018 1_1:+74629816 Msa0043500:CDS
TTCCCCAGGGCTCTCACCTT+TGG 0.274890 1_1:-74632856 None:intergenic
AAAGCAGCCCGTGGATATAT+TGG 0.290376 1_1:+74633043 Msa0043500:three_prime_UTR
TCAGGCATTGGCACGCTATC+AGG 0.305387 1_1:+74632061 Msa0043500:intron
TTGAATAGTTCTGAAGCTTC+AGG 0.318305 1_1:-74628902 None:intergenic
TGGCCATCCCAATGCTGCTT+TGG 0.320422 1_1:-74627369 None:intergenic
TACCTCGGAATGTGTTTGTT+AGG 0.320607 1_1:-74627598 None:intergenic
GGATTGTTGGCATTCTTGTC+AGG 0.332047 1_1:-74628881 None:intergenic
AAAGAGAGGCTTCAGGTCTA+TGG 0.335119 1_1:+74627870 Msa0043500:exon
GAAATCGATTTATCTAATCT+TGG 0.354013 1_1:+74629782 Msa0043500:CDS
AAAGAAAGAAAGAAAGAAAC+AGG 0.355747 1_1:-74627554 None:intergenic
TTCAAGAACATTAGCCGAAA+TGG 0.367637 1_1:-74629947 None:intergenic
TTCTGAAGCTTCAGGATTGT+TGG 0.367958 1_1:-74628894 None:intergenic
CCCAATCAAGACTACCATTT+CGG 0.369384 1_1:+74629933 Msa0043500:CDS
TCTTCAACCTTGTGAAGTTT+CGG 0.371250 1_1:+74631682 Msa0043500:CDS
GCCGAAATGGTAGTCTTGAT+TGG 0.375333 1_1:-74629934 None:intergenic
AATTCAAGAACACAAGAAAC+TGG 0.387032 1_1:-74627501 None:intergenic
AGATGGAGGGTCAGATAGTA+AGG 0.390540 1_1:+74632878 Msa0043500:CDS
ATGGTTCAACCTCAATCTTA+AGG 0.396575 1_1:+74632920 Msa0043500:CDS
TGTGCCGCAAGGCTTGATAA+AGG 0.397229 1_1:-74633311 None:intergenic
TAAATTATTCAGACCATAAA+CGG 0.401187 1_1:-74631732 None:intergenic
CAACCTCAATCTTAAGGGCT+CGG 0.401801 1_1:+74632926 Msa0043500:CDS
TGGTTGGTTAATTTGTTCAT+TGG 0.402552 1_1:+74633120 Msa0043500:three_prime_UTR
GGGCTATGGTTTAGCATTGC+AGG 0.403402 1_1:+74630334 Msa0043500:CDS
TCGGAAAATTTGAGTCTCAT+TGG 0.405324 1_1:-74633202 None:intergenic
GGTTCCTCAAAGTTGTGAAC+TGG 0.407085 1_1:+74633100 Msa0043500:three_prime_UTR
TAAGGGTCACGTCGAATTGC+TGG 0.410479 1_1:-74627919 None:intergenic
AAGCAGCCCGTGGATATATT+GGG 0.418295 1_1:+74633044 Msa0043500:three_prime_UTR
ATTTCGAACAAGATGCAAAC+GGG 0.423149 1_1:+74630312 Msa0043500:CDS
ACCTCGGAATGTGTTTGTTA+GGG 0.430343 1_1:-74627597 None:intergenic
AAATCGATTTATCTAATCTT+GGG 0.433620 1_1:+74629783 Msa0043500:CDS
AACTGCACAAAGCAAATTCA+AGG 0.433774 1_1:+74630207 Msa0043500:CDS
AATGAGCAGCAAGCTGAGTC+CGG 0.438090 1_1:+74630163 Msa0043500:CDS
TTCCTGATCGGATGATTCCT+TGG 0.440358 1_1:-74627959 None:intergenic
AAGAACACAAGAAACTGGTT+TGG 0.445552 1_1:-74627496 None:intergenic
AACCTCAATCTTAAGGGCTC+GGG 0.448187 1_1:+74632927 Msa0043500:CDS
GTTCTTGAAGAAGCTTTGAA+TGG 0.448738 1_1:+74629961 Msa0043500:CDS
GGTGAGAGCCCTGGGGAAGA+TGG 0.452090 1_1:+74632861 Msa0043500:CDS
CCAACCAGTTCACAACTTTG+AGG 0.453631 1_1:-74633104 None:intergenic
CCGAAATGGTAGTCTTGATT+GGG 0.459457 1_1:-74629933 None:intergenic
TGGTTCAACCTCAATCTTAA+GGG 0.459920 1_1:+74632921 Msa0043500:CDS
TAAAGAGAAAGAGAGGCTTC+AGG 0.462041 1_1:+74627863 Msa0043500:five_prime_UTR
ACTGGCAAAGTGACATCTGC+TGG 0.462289 1_1:+74631476 Msa0043500:CDS
TCAGATAGTAAGGATAAATC+AGG 0.462722 1_1:+74632888 Msa0043500:CDS
GGTTTGGTTTCGCTAGAGTC+AGG 0.463214 1_1:-74627480 None:intergenic
TAATTAAACCAAAGCAGCAT+TGG 0.469609 1_1:+74627361 Msa0043500:five_prime_UTR
ATTCCAAAGGTGAGAGCCCT+GGG 0.470174 1_1:+74632853 Msa0043500:CDS
AATTAAACCAAAGCAGCATT+GGG 0.477522 1_1:+74627362 Msa0043500:five_prime_UTR
TTTATTTGGTAACAGCAAGC+TGG 0.478612 1_1:+74629906 Msa0043500:intron
TATACATTCAAAATGCTCAA+TGG 0.488983 1_1:-74627389 None:intergenic
TTCCAAGGAATCATCCGATC+AGG 0.491880 1_1:+74627957 Msa0043500:CDS
TCTGACCCTCCATCTTCCCC+AGG 0.494682 1_1:-74632870 None:intergenic
TGACAATGGTGAAGGTAGAA+TGG 0.495930 1_1:-74632761 None:intergenic
GTACGACAGTGCAGGATTTG+AGG 0.501253 1_1:+74628976 Msa0043500:CDS
AACCCGAGCCCTTAAGATTG+AGG 0.504980 1_1:-74632929 None:intergenic
ACTGCCACTTCCACTAGTAC+TGG 0.506538 1_1:-74632790 None:intergenic
ATAAAGATAAAGAGAAAGAG+AGG 0.508670 1_1:+74627856 Msa0043500:five_prime_UTR
GATTCCAAAGGTGAGAGCCC+TGG 0.509111 1_1:+74632852 Msa0043500:CDS
TTATTTGGTAACAGCAAGCT+GGG 0.510014 1_1:+74629907 Msa0043500:intron
GATTGTTGGCATTCTTGTCA+GGG 0.511190 1_1:-74628880 None:intergenic
AAGTTTGATCCCATGACTGA+TGG 0.511963 1_1:-74633020 None:intergenic
TGAGGATGCTACAAGGGAAT+CGG 0.513549 1_1:-74633221 None:intergenic
GAAACGCCTAAAACTTCGTA+AGG 0.514888 1_1:-74627937 None:intergenic
ACGGCAAATATATGTGTGCC+AGG 0.520233 1_1:-74631713 None:intergenic
GAAGTTTCGGAACTAAAGCC+TGG 0.523940 1_1:+74631695 Msa0043500:CDS
AAGGACGCCATCTCGCAACT+TGG 0.527310 1_1:+74627443 Msa0043500:five_prime_UTR
CAGGTCTATGGATCAAAAGA+TGG 0.537155 1_1:+74627882 Msa0043500:exon
AGAAGGCAGTACGACAGTGC+AGG 0.538322 1_1:+74628968 Msa0043500:CDS
ATGAGCAGCAAGCTGAGTCC+GGG 0.538924 1_1:+74630164 Msa0043500:CDS
AGGCTTGATAAAGGAAAAGA+AGG 0.539248 1_1:-74633302 None:intergenic
ACAGTCAGACCCCTTCCAAT+GGG 0.539807 1_1:+74629991 Msa0043500:CDS
TATTTCGAACAAGATGCAAA+CGG 0.540322 1_1:+74630311 Msa0043500:CDS
GGCACTTGATGCTGATAGCA+TGG 0.541278 1_1:+74629754 Msa0043500:intron
TGACAGATGTTCCCATTGGA+AGG 0.542282 1_1:-74630002 None:intergenic
CCAACCAGTACTAGTGGAAG+TGG 0.543516 1_1:+74632786 Msa0043500:CDS
CCACTTCCACTAGTACTGGT+TGG 0.543648 1_1:-74632786 None:intergenic
CCACTGACAGATGTTCCCAT+TGG 0.546382 1_1:-74630006 None:intergenic
TTGGTTTGTGATGCAGTCAA+AGG 0.547925 1_1:+74633139 Msa0043500:three_prime_UTR
TACAGTCAGACCCCTTCCAA+TGG 0.549746 1_1:+74629990 Msa0043500:CDS
CACTACACCCAATATATCCA+CGG 0.551627 1_1:-74633051 None:intergenic
GAGAGCCCTGGGGAAGATGG+AGG 0.552103 1_1:+74632864 Msa0043500:CDS
TAAGAAAGAGGAATGAGCTA+CGG 0.559189 1_1:+74631938 Msa0043500:CDS
ATTCGAATCAGAATATAGAA+AGG 0.559792 1_1:+74631963 Msa0043500:CDS
GCTTGAGTGACCATCAGTCA+TGG 0.560979 1_1:+74633010 Msa0043500:three_prime_UTR
AGTGGCAGTAATTTAAGCAA+TGG 0.561362 1_1:+74632804 Msa0043500:CDS
AGAGCCCTGGGGAAGATGGA+GGG 0.564660 1_1:+74632865 Msa0043500:CDS
AGCTTCAGAACTATTCAAAG+AGG 0.565165 1_1:+74628907 Msa0043500:CDS
TAGATGAGCTTCTGAAGCAA+AGG 0.568314 1_1:+74632730 Msa0043500:CDS
GACAGATGTTCCCATTGGAA+GGG 0.577219 1_1:-74630001 None:intergenic
CCTCAAAGTTGTGAACTGGT+TGG 0.577735 1_1:+74633104 Msa0043500:three_prime_UTR
AGATGAGCTTCTGAAGCAAA+GGG 0.578480 1_1:+74632731 Msa0043500:CDS
ACAGATGTTCCCATTGGAAG+GGG 0.585092 1_1:-74630000 None:intergenic
GTCAAGCCAACCAGTACTAG+TGG 0.588616 1_1:+74632780 Msa0043500:CDS
CAGGAAGATAGTGAGAAGAC+TGG 0.589084 1_1:+74631458 Msa0043500:intron
GCTTTCTTTAAAAGGTTGGA+AGG 0.589624 1_1:+74631659 Msa0043500:CDS
AGTAACTCTTACTACAATCC+CGG 0.591228 1_1:-74630182 None:intergenic
CTTGAGTGACCATCAGTCAT+GGG 0.593639 1_1:+74633011 Msa0043500:three_prime_UTR
TATATGTTGAGGATGCTACA+AGG 0.593654 1_1:-74633228 None:intergenic
GGGAACATCTGTCAGTGGAA+AGG 0.595107 1_1:+74630011 Msa0043500:CDS
AAACCAAAGCAGCATTGGGA+TGG 0.595402 1_1:+74627366 Msa0043500:five_prime_UTR
CTGACCCTCCATCTTCCCCA+GGG 0.596536 1_1:-74632869 None:intergenic
TCCCTAACAAACACATTCCG+AGG 0.601621 1_1:+74627596 Msa0043500:five_prime_UTR
TCTATGGATCAAAAGATGGA+AGG 0.606940 1_1:+74627886 Msa0043500:exon
TGTAAGACCAAGTTGCGAGA+TGG 0.610392 1_1:-74627450 None:intergenic
TATCTGACCCAGAAAAGAGA+AGG 0.614795 1_1:+74628951 Msa0043500:CDS
ATCTTTCTATTCGAACAACA+CGG 0.618920 1_1:-74627835 None:intergenic
ACTACACCCAATATATCCAC+GGG 0.622246 1_1:-74633050 None:intergenic
TGTTGTGGTGCAGTTAGCGA+TGG 0.622724 1_1:+74631619 Msa0043500:intron
AGCGATGGCCAAGGATCCTG+AGG 0.626922 1_1:+74631634 Msa0043500:CDS
GCGATGGCCAAGGATCCTGA+GGG 0.627814 1_1:+74631635 Msa0043500:CDS
GGTGCAGTTAGCGATGGCCA+AGG 0.631797 1_1:+74631625 Msa0043500:intron
ATTTCTGGTGAAGATTCCAA+AGG 0.636229 1_1:+74632840 Msa0043500:CDS
AATGGATTCAACTGTGAATG+CGG 0.640290 1_1:+74631529 Msa0043500:CDS
ATATGTTGAGGATGCTACAA+GGG 0.642836 1_1:-74633227 None:intergenic
TGATGCTGATAGCATGGACA+TGG 0.647234 1_1:+74629760 Msa0043500:CDS
ATCAAACTTAAAGCAGCCCG+TGG 0.648796 1_1:+74633034 Msa0043500:three_prime_UTR
TTTAGTTCCGAAACTTCACA+AGG 0.659450 1_1:-74631689 None:intergenic
TTTCGAACAAGATGCAAACG+GGG 0.666223 1_1:+74630313 Msa0043500:CDS
GATGGCCAAGGATCCTGAGG+GGG 0.667249 1_1:+74631637 Msa0043500:CDS
GAGCTTCTGAAGCAAAGGGA+CGG 0.671749 1_1:+74632735 Msa0043500:CDS
CCAATGGGAACATCTGTCAG+TGG 0.675083 1_1:+74630006 Msa0043500:CDS
AGTACTGGTTGGCTTGACAA+TGG 0.678755 1_1:-74632775 None:intergenic
AAACGCCTAAAACTTCGTAA+GGG 0.680076 1_1:-74627936 None:intergenic
GGTTGGCTTGACAATGGTGA+AGG 0.708781 1_1:-74632769 None:intergenic
TTCGAACAAGATGCAAACGG+GGG 0.711604 1_1:+74630314 Msa0043500:CDS
CGATGGCCAAGGATCCTGAG+GGG 0.716333 1_1:+74631636 Msa0043500:CDS
TTCCAAAGGTGAGAGCCCTG+GGG 0.764572 1_1:+74632854 Msa0043500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAAAAAAAAAAAAA+AGG + chr1_1:74627424-74627443 Msa0043500:five_prime_UTR 0.0%
!! TTATAAAAAACTGAATATTT+AGG - chr1_1:74628245-74628264 None:intergenic 10.0%
!!! TATTATATTTTAGTCAAAAT+TGG + chr1_1:74629352-74629371 Msa0043500:intron 10.0%
!! AAAGTTACATATTAATTAAA+AGG - chr1_1:74629710-74629729 None:intergenic 10.0%
!!! AATTTAATACCAATATATTT+TGG - chr1_1:74630695-74630714 None:intergenic 10.0%
!! TAATAATCGAATTCAAAAAA+GGG - chr1_1:74627675-74627694 None:intergenic 15.0%
!! AAAAAGCAAAAAAAAAAATG+AGG - chr1_1:74628047-74628066 None:intergenic 15.0%
!!! ATAGTTTGCTTTTTATATAT+CGG + chr1_1:74629575-74629594 Msa0043500:intron 15.0%
!!! TGGTTTGTTTTTTTATATAT+CGG + chr1_1:74629623-74629642 Msa0043500:intron 15.0%
!! AATGAGATAATATATTGTTA+AGG + chr1_1:74630505-74630524 Msa0043500:intron 15.0%
!! ATGAGATAATATATTGTTAA+GGG + chr1_1:74630506-74630525 Msa0043500:intron 15.0%
!!! TTAATAGTCATTTCAATTTT+TGG - chr1_1:74630894-74630913 None:intergenic 15.0%
!!! AATTTGAGATATAAGTTAAT+GGG - chr1_1:74630984-74631003 None:intergenic 15.0%
!! TATCAAAAATATATATGTTG+AGG - chr1_1:74633242-74633261 None:intergenic 15.0%
!! GTAATAATCGAATTCAAAAA+AGG - chr1_1:74627676-74627695 None:intergenic 20.0%
!! CATAGTAATTTGAATTACAA+AGG - chr1_1:74628293-74628312 None:intergenic 20.0%
!! TAATTCAAATTACTATGTCT+GGG + chr1_1:74628296-74628315 Msa0043500:intron 20.0%
!!! AAAAATTTAGAATCTTGTCA+GGG - chr1_1:74628403-74628422 None:intergenic 20.0%
!! TTAAGGTTATGACTTAAAAT+TGG + chr1_1:74628491-74628510 Msa0043500:intron 20.0%
!! TAAGGTTATGACTTAAAATT+GGG + chr1_1:74628492-74628511 Msa0043500:intron 20.0%
!! AAATACTATAGATTAGTGTT+TGG + chr1_1:74628629-74628648 Msa0043500:intron 20.0%
!! AATACTATAGATTAGTGTTT+GGG + chr1_1:74628630-74628649 Msa0043500:intron 20.0%
!! ATAAATTGTTTAAACTGTGT+AGG + chr1_1:74628737-74628756 Msa0043500:intron 20.0%
!!! TATAATTTTTTCCCTTTTCT+GGG + chr1_1:74629167-74629186 Msa0043500:intron 20.0%
!! CTAAAATATAATATTTGACG+TGG - chr1_1:74629345-74629364 None:intergenic 20.0%
!! AAAAACAGTACATATGTATA+AGG - chr1_1:74629425-74629444 None:intergenic 20.0%
!! ATAGTAATCTATGAAAAGAT+AGG - chr1_1:74629458-74629477 None:intergenic 20.0%
!!! AAATCGATTTATCTAATCTT+GGG + chr1_1:74629783-74629802 Msa0043500:CDS 20.0%
!! TCAAAAGTAACAAAGTTTAT+TGG + chr1_1:74630556-74630575 Msa0043500:intron 20.0%
!!! GTTGATTTACCAAAATATAT+TGG + chr1_1:74630683-74630702 Msa0043500:intron 20.0%
!! GACTATTAACTTTATATTAC+TGG + chr1_1:74630905-74630924 Msa0043500:intron 20.0%
!!! GAATTTGAGATATAAGTTAA+TGG - chr1_1:74630985-74631004 None:intergenic 20.0%
!!! ATCTATGAATCAATTTTGAA+TGG - chr1_1:74631353-74631372 None:intergenic 20.0%
!! TAAATTATTCAGACCATAAA+CGG - chr1_1:74631735-74631754 None:intergenic 20.0%
!! CAATTATCAGAATTTAATAG+AGG + chr1_1:74632354-74632373 Msa0043500:intron 20.0%
!!! TAATTTGTCTGTTATTTTTC+TGG + chr1_1:74632698-74632717 Msa0043500:intron 20.0%
! TATACATTCAAAATGCTCAA+TGG - chr1_1:74627392-74627411 None:intergenic 25.0%
! AAAGAAAGAAAGAAAGAAAC+AGG - chr1_1:74627557-74627576 None:intergenic 25.0%
! AATTGAACAAACCACTTATT+AGG + chr1_1:74627711-74627730 Msa0043500:intron 25.0%
! ATAAAGATAAAGAGAAAGAG+AGG + chr1_1:74627856-74627875 Msa0043500:five_prime_UTR 25.0%
! TTAGGAAACATAAAGACTAA+AGG - chr1_1:74628227-74628246 None:intergenic 25.0%
! GTAATTCAAATTACTATGTC+TGG + chr1_1:74628295-74628314 Msa0043500:intron 25.0%
!! AAAATTTAGAATCTTGTCAG+GGG - chr1_1:74628402-74628421 None:intergenic 25.0%
!! CAAAAATTTAGAATCTTGTC+AGG - chr1_1:74628404-74628423 None:intergenic 25.0%
!!! CTTAAAATGAGTGTTTTTTC+AGG - chr1_1:74628476-74628495 None:intergenic 25.0%
!! CTGAAAAAACACTCATTTTA+AGG + chr1_1:74628474-74628493 Msa0043500:intron 25.0%
! TCATAACCATTCAAATTGAA+GGG - chr1_1:74628574-74628593 None:intergenic 25.0%
!!! AAAACAAAAGTTTTGGCTAA+TGG + chr1_1:74629081-74629100 Msa0043500:intron 25.0%
!!! CTATAATTTTTTCCCTTTTC+TGG + chr1_1:74629166-74629185 Msa0043500:intron 25.0%
!!! ATAATTTTTTCCCTTTTCTG+GGG + chr1_1:74629168-74629187 Msa0043500:intron 25.0%
! AAAACATGAGTCATTTGTTT+CGG + chr1_1:74629393-74629412 Msa0043500:intron 25.0%
!! GAAATCGATTTATCTAATCT+TGG + chr1_1:74629782-74629801 Msa0043500:CDS 25.0%
!! GCATTGTTTCTTACTTTATT+TGG + chr1_1:74629892-74629911 Msa0043500:intron 25.0%
! TTGTTCTTATTCCACTTATA+TGG + chr1_1:74630088-74630107 Msa0043500:intron 25.0%
! ACTTTGACAACAACAAATAA+GGG - chr1_1:74630414-74630433 None:intergenic 25.0%
! AACTTTGACAACAACAAATA+AGG - chr1_1:74630415-74630434 None:intergenic 25.0%
! TCTCTGCAATAAATACTTAA+GGG - chr1_1:74630472-74630491 None:intergenic 25.0%
! ATCTCTGCAATAAATACTTA+AGG - chr1_1:74630473-74630492 None:intergenic 25.0%
!!! ACAAAGTTTATTGGTTTTCT+TGG + chr1_1:74630565-74630584 Msa0043500:intron 25.0%
! CATAAAACAGACAACTAAAA+AGG + chr1_1:74630602-74630621 Msa0043500:intron 25.0%
! GCATAATATTAGTAAACACT+AGG + chr1_1:74631054-74631073 Msa0043500:intron 25.0%
! TTTATCCAGATGATAAAAAC+AGG - chr1_1:74631189-74631208 None:intergenic 25.0%
!!! AAGTTTGAAGGAATTGATTT+TGG - chr1_1:74631214-74631233 None:intergenic 25.0%
! GTATGGATATTATGTCTATT+TGG + chr1_1:74631551-74631570 Msa0043500:intron 25.0%
!!! TGTTTTTTTTTTTGCTTGCT+TGG + chr1_1:74631766-74631785 Msa0043500:intron 25.0%
!!! GTTTTTTTTTTTGCTTGCTT+GGG + chr1_1:74631767-74631786 Msa0043500:intron 25.0%
!!! AATTCGAGTTGATATTGTTT+AGG + chr1_1:74631814-74631833 Msa0043500:intron 25.0%
! ATTCGAATCAGAATATAGAA+AGG + chr1_1:74631963-74631982 Msa0043500:CDS 25.0%
! TCAGAATTTAATAGAGGAAA+AGG + chr1_1:74632360-74632379 Msa0043500:intron 25.0%
! ATAAATCAGGCAAAAAGAAA+TGG + chr1_1:74632901-74632920 Msa0043500:CDS 25.0%
! TCTCATTGGACAAAAAATAT+AGG - chr1_1:74633191-74633210 None:intergenic 25.0%
TAATTAAACCAAAGCAGCAT+TGG + chr1_1:74627361-74627380 Msa0043500:five_prime_UTR 30.0%
AATTAAACCAAAGCAGCATT+GGG + chr1_1:74627362-74627381 Msa0043500:five_prime_UTR 30.0%
AATTCAAGAACACAAGAAAC+TGG - chr1_1:74627504-74627523 None:intergenic 30.0%
GTATTGTTTGACCTAATAAG+TGG - chr1_1:74627725-74627744 None:intergenic 30.0%
!!! GTAGAATTGAGCTTTTTTGA+GGG - chr1_1:74627790-74627809 None:intergenic 30.0%
AGTAGCTGTTGAATGAAAAA+AGG - chr1_1:74627812-74627831 None:intergenic 30.0%
ATCTTTCTATTCGAACAACA+CGG - chr1_1:74627838-74627857 None:intergenic 30.0%
ATGAGGTAGAAAGTGAAAAA+GGG - chr1_1:74628030-74628049 None:intergenic 30.0%
AATGAGGTAGAAAGTGAAAA+AGG - chr1_1:74628031-74628050 None:intergenic 30.0%
! TTGATGACCTTCAAAATCTA+GGG - chr1_1:74628161-74628180 None:intergenic 30.0%
GAAACATAAAGACTAAAGGT+TGG - chr1_1:74628223-74628242 None:intergenic 30.0%
!!! CGATTATGCTGTTGTTTTTT+TGG - chr1_1:74628364-74628383 None:intergenic 30.0%
! ACAGGTTAATTAGGATTTTG+GGG - chr1_1:74628447-74628466 None:intergenic 30.0%
! GACAGGTTAATTAGGATTTT+GGG - chr1_1:74628448-74628467 None:intergenic 30.0%
!!! ATGAGTGTTTTTTCAGGTTT+TGG - chr1_1:74628470-74628489 None:intergenic 30.0%
GTCATAACCATTCAAATTGA+AGG - chr1_1:74628575-74628594 None:intergenic 30.0%
! AATGGTTATGACTTTTGCTT+GGG + chr1_1:74628583-74628602 Msa0043500:intron 30.0%
! TATCTCACTATAGCTTTTCT+AGG + chr1_1:74628792-74628811 Msa0043500:intron 30.0%
! ATCTCACTATAGCTTTTCTA+GGG + chr1_1:74628793-74628812 Msa0043500:intron 30.0%
CTGATCTCTATATAATTGAC+AGG + chr1_1:74628852-74628871 Msa0043500:intron 30.0%
! CAGCATGAAAACAAAAGTTT+TGG + chr1_1:74629074-74629093 Msa0043500:intron 30.0%
ATTTACCAAGTTATCTAGCT+TGG + chr1_1:74629113-74629132 Msa0043500:intron 30.0%
ATAGAAGTAAGATGTCAAGA+TGG - chr1_1:74629200-74629219 None:intergenic 30.0%
TTGACATCTTACTTCTATGA+TGG + chr1_1:74629202-74629221 Msa0043500:intron 30.0%
TAATCTATGAAAAGATAGGC+AGG - chr1_1:74629454-74629473 None:intergenic 30.0%
AAATGCATGAATTGAACGAA+AGG - chr1_1:74629481-74629500 None:intergenic 30.0%
ATTAAAAGGAGAGTTGTATC+AGG - chr1_1:74629696-74629715 None:intergenic 30.0%
! CTATTTTGCCTATGTATATC+AGG + chr1_1:74629733-74629752 Msa0043500:intron 30.0%
AAGCAATGCAATAATCTTCT+TGG + chr1_1:74630058-74630077 Msa0043500:intron 30.0%
!!! AAGCAATGTGCTCATTTTTT+TGG + chr1_1:74630130-74630149 Msa0043500:CDS 30.0%
!!! TGCCTTTTTTACAATGATTC+CGG + chr1_1:74630239-74630258 Msa0043500:intron 30.0%
TATTTCGAACAAGATGCAAA+CGG + chr1_1:74630311-74630330 Msa0043500:CDS 30.0%
!! TACAAAAGCACCACTTAAAA+AGG - chr1_1:74630380-74630399 None:intergenic 30.0%
AACAGACAACTAAAAAGGAA+TGG + chr1_1:74630607-74630626 Msa0043500:intron 30.0%
GATATCACAGAAACTCTAAT+AGG + chr1_1:74630791-74630810 Msa0043500:intron 30.0%
TGAATGATGATTAATCTCAC+AGG + chr1_1:74630843-74630862 Msa0043500:intron 30.0%
!! GTCATTTCAATTTTTGGAAG+AGG - chr1_1:74630888-74630907 None:intergenic 30.0%
TGATAAAAACAGGAAACACA+AGG - chr1_1:74631179-74631198 None:intergenic 30.0%
!!! TGTTTCCTGTTTTTATCATC+TGG + chr1_1:74631181-74631200 Msa0043500:intron 30.0%
CACAAGATTTGAAAGTTTGA+AGG - chr1_1:74631226-74631245 None:intergenic 30.0%
! GTGAAACACATTTTATCATC+TGG + chr1_1:74631243-74631262 Msa0043500:intron 30.0%
AGTAGTTGTGCAATTACAAT+TGG + chr1_1:74631402-74631421 Msa0043500:intron 30.0%
!!! ACATTTTCAAGTGTACAGAA+TGG + chr1_1:74631511-74631530 Msa0043500:CDS 30.0%
! TTGGTTTCTTTTCTTTGTTG+CGG + chr1_1:74631570-74631589 Msa0043500:intron 30.0%
! ACACATATATTTGCCGTTTA+TGG + chr1_1:74631719-74631738 Msa0043500:CDS 30.0%
! CTCAATATCCTGAAGTTTTT+GGG - chr1_1:74631908-74631927 None:intergenic 30.0%
!! AGGCTCAAATTTTAAGAAAG+AGG + chr1_1:74631926-74631945 Msa0043500:CDS 30.0%
!!! ATAGCTTGAAGTTTGTTTTG+TGG + chr1_1:74632008-74632027 Msa0043500:intron 30.0%
TTCAGAAAAGGATCACATTA+AGG - chr1_1:74632035-74632054 None:intergenic 30.0%
TTTATAACTGTAGCATGTGT+TGG - chr1_1:74632132-74632151 None:intergenic 30.0%
GCATATAAAAGACCAAAACA+AGG - chr1_1:74632420-74632439 None:intergenic 30.0%
!! CGTTTTGATATAATTTACCC+TGG + chr1_1:74632615-74632634 Msa0043500:intron 30.0%
ATTAAATGTGTTCTGCTCTT+CGG + chr1_1:74632645-74632664 Msa0043500:intron 30.0%
TCAGATAGTAAGGATAAATC+AGG + chr1_1:74632888-74632907 Msa0043500:CDS 30.0%
! CTACAATGTTTTCATTTGCT+TGG + chr1_1:74633079-74633098 Msa0043500:three_prime_UTR 30.0%
!! TGGTTGGTTAATTTGTTCAT+TGG + chr1_1:74633120-74633139 Msa0043500:three_prime_UTR 30.0%
AAGAACACAAGAAACTGGTT+TGG - chr1_1:74627499-74627518 None:intergenic 35.0%
AGGGAAAAGAGAGAGATTAT+GGG - chr1_1:74627656-74627675 None:intergenic 35.0%
AAGGGAAAAGAGAGAGATTA+TGG - chr1_1:74627657-74627676 None:intergenic 35.0%
CTACTGCTATTACTATGACA+TGG - chr1_1:74627757-74627776 None:intergenic 35.0%
!!! TTGAGCTTTTTTGAGGGTTT+GGG - chr1_1:74627784-74627803 None:intergenic 35.0%
!!! ATTGAGCTTTTTTGAGGGTT+TGG - chr1_1:74627785-74627804 None:intergenic 35.0%
!!! GGTAGAATTGAGCTTTTTTG+AGG - chr1_1:74627791-74627810 None:intergenic 35.0%
TCTATGGATCAAAAGATGGA+AGG + chr1_1:74627886-74627905 Msa0043500:exon 35.0%
AAACGCCTAAAACTTCGTAA+GGG - chr1_1:74627939-74627958 None:intergenic 35.0%
!!! AGCGGTTTTAATTTCCTGAT+CGG - chr1_1:74627974-74627993 None:intergenic 35.0%
! TGTAGAACCCTAGATTTTGA+AGG + chr1_1:74628151-74628170 Msa0043500:intron 35.0%
!! GTTGATGACCTTCAAAATCT+AGG - chr1_1:74628162-74628181 None:intergenic 35.0%
TTGCACTCAACAGAAACTTT+AGG + chr1_1:74628336-74628355 Msa0043500:intron 35.0%
CAGCATAATCGAATTACCTA+AGG + chr1_1:74628373-74628392 Msa0043500:intron 35.0%
! GGACAGGTTAATTAGGATTT+TGG - chr1_1:74628449-74628468 None:intergenic 35.0%
!!! AGGTTTTGGACAGGTTAATT+AGG - chr1_1:74628456-74628475 None:intergenic 35.0%
!!! TGTTTTTTCAGGTTTTGGAC+AGG - chr1_1:74628465-74628484 None:intergenic 35.0%
GCTTTCTTAAACTCATTCCA+AGG - chr1_1:74628552-74628571 None:intergenic 35.0%
AGAAAGCCCTTCAATTTGAA+TGG + chr1_1:74628565-74628584 Msa0043500:intron 35.0%
! GAATGGTTATGACTTTTGCT+TGG + chr1_1:74628582-74628601 Msa0043500:intron 35.0%
! ATGGTTATGACTTTTGCTTG+GGG + chr1_1:74628584-74628603 Msa0043500:intron 35.0%
ACTAGCTATGACTAATCAGA+GGG - chr1_1:74628696-74628715 None:intergenic 35.0%
AACTAGCTATGACTAATCAG+AGG - chr1_1:74628697-74628716 None:intergenic 35.0%
GAAAAGCTATAGTGAGATAG+CGG - chr1_1:74628791-74628810 None:intergenic 35.0%
GAGATCAGTGTTATCAATTG+TGG - chr1_1:74628840-74628859 None:intergenic 35.0%
!! TTGAATAGTTCTGAAGCTTC+AGG - chr1_1:74628905-74628924 None:intergenic 35.0%
AGCTTCAGAACTATTCAAAG+AGG + chr1_1:74628907-74628926 Msa0043500:CDS 35.0%
ATCGAAGAAAAGAAGAGCTT+TGG - chr1_1:74629032-74629051 None:intergenic 35.0%
! TGTTTTCATGCTGCCAAAAA+GGG - chr1_1:74629067-74629086 None:intergenic 35.0%
! TTGTTTTCATGCTGCCAAAA+AGG - chr1_1:74629068-74629087 None:intergenic 35.0%
!!! AAAGTTTTGGCTAATGGCAT+AGG + chr1_1:74629087-74629106 Msa0043500:intron 35.0%
! GTTTTCCAAGCTAGATAACT+TGG - chr1_1:74629121-74629140 None:intergenic 35.0%
AAAGCATAAGAAAAGCTTGC+AGG - chr1_1:74629240-74629259 None:intergenic 35.0%
ACATATACATCTCAGAAGAG+AGG + chr1_1:74629262-74629281 Msa0043500:intron 35.0%
GCTGCTTGCATTAATGTAAA+TGG + chr1_1:74629556-74629575 Msa0043500:intron 35.0%
ATCAAGTGCCTGATATACAT+AGG - chr1_1:74629744-74629763 None:intergenic 35.0%
!! CAATGTTTGCAGCTTTATTC+AGG + chr1_1:74629816-74629835 Msa0043500:CDS 35.0%
! TTTATTTGGTAACAGCAAGC+TGG + chr1_1:74629906-74629925 Msa0043500:intron 35.0%
! TTATTTGGTAACAGCAAGCT+GGG + chr1_1:74629907-74629926 Msa0043500:intron 35.0%
TTCAAGAACATTAGCCGAAA+TGG - chr1_1:74629950-74629969 None:intergenic 35.0%
!! GTTCTTGAAGAAGCTTTGAA+TGG + chr1_1:74629961-74629980 Msa0043500:CDS 35.0%
GCAACAAATTGCCATATAAG+TGG - chr1_1:74630102-74630121 None:intergenic 35.0%
!! CTTATATGGCAATTTGTTGC+AGG + chr1_1:74630102-74630121 Msa0043500:intron 35.0%
AGTAACTCTTACTACAATCC+CGG - chr1_1:74630185-74630204 None:intergenic 35.0%
AACTGCACAAAGCAAATTCA+AGG + chr1_1:74630207-74630226 Msa0043500:CDS 35.0%
AGCCGGAATCATTGTAAAAA+AGG - chr1_1:74630244-74630263 None:intergenic 35.0%
TACAATGATTCCGGCTAATA+TGG + chr1_1:74630248-74630267 Msa0043500:intron 35.0%
CAGATTGTAATATTGAACGC+TGG + chr1_1:74630274-74630293 Msa0043500:intron 35.0%
ATTTCGAACAAGATGCAAAC+GGG + chr1_1:74630312-74630331 Msa0043500:CDS 35.0%
ACCACTTAAAAAGGAACGTA+GGG - chr1_1:74630371-74630390 None:intergenic 35.0%
AGACAACTAAAAAGGAATGG+AGG + chr1_1:74630610-74630629 Msa0043500:intron 35.0%
GACAACTAAAAAGGAATGGA+GGG + chr1_1:74630611-74630630 Msa0043500:intron 35.0%
TGGTAAATCAACAAGTCGAA+GGG - chr1_1:74630675-74630694 None:intergenic 35.0%
TTGGTAAATCAACAAGTCGA+AGG - chr1_1:74630676-74630695 None:intergenic 35.0%
TTTGGAAGAGGTAAAACCAT+GGG - chr1_1:74630876-74630895 None:intergenic 35.0%
!! TTTTGGAAGAGGTAAAACCA+TGG - chr1_1:74630877-74630896 None:intergenic 35.0%
TAAAAGGGAAATGGAGATGA+GGG - chr1_1:74631021-74631040 None:intergenic 35.0%
AGACACAAGTAAAAGGGAAA+TGG - chr1_1:74631030-74631049 None:intergenic 35.0%
GCTACAAGACACAAGTAAAA+GGG - chr1_1:74631036-74631055 None:intergenic 35.0%
TGCTACAAGACACAAGTAAA+AGG - chr1_1:74631037-74631056 None:intergenic 35.0%
TAAATAACAATCCTTGCACG+TGG + chr1_1:74631080-74631099 Msa0043500:intron 35.0%
TAAAAATACAACCACGTGCA+AGG - chr1_1:74631094-74631113 None:intergenic 35.0%
CATAACAGCACGAATTTCTA+TGG + chr1_1:74631132-74631151 Msa0043500:intron 35.0%
GTCTATGCAATTGTCTATAC+AGG + chr1_1:74631439-74631458 Msa0043500:intron 35.0%
! AATGGATTCAACTGTGAATG+CGG + chr1_1:74631529-74631548 Msa0043500:CDS 35.0%
! TGGTTTCTTTTCTTTGTTGC+GGG + chr1_1:74631571-74631590 Msa0043500:intron 35.0%
! GCTTTCTTTAAAAGGTTGGA+AGG + chr1_1:74631659-74631678 Msa0043500:CDS 35.0%
TCTTCAACCTTGTGAAGTTT+CGG + chr1_1:74631682-74631701 Msa0043500:CDS 35.0%
! TTTAGTTCCGAAACTTCACA+AGG - chr1_1:74631692-74631711 None:intergenic 35.0%
!! AATATCCTGAAGTTTTTGGG+TGG - chr1_1:74631905-74631924 None:intergenic 35.0%
! CCTCAATATCCTGAAGTTTT+TGG - chr1_1:74631909-74631928 None:intergenic 35.0%
CCAAAAACTTCAGGATATTG+AGG + chr1_1:74631906-74631925 Msa0043500:CDS 35.0%
TAAGAAAGAGGAATGAGCTA+CGG + chr1_1:74631938-74631957 Msa0043500:CDS 35.0%
! TCCTTTTCTGAATACGTTTC+AGG + chr1_1:74632043-74632062 Msa0043500:intron 35.0%
! AAACAAGGATAAGCATCGTA+TGG - chr1_1:74632405-74632424 None:intergenic 35.0%
!! TACGATGCTTATCCTTGTTT+TGG + chr1_1:74632405-74632424 Msa0043500:intron 35.0%
AAACAGGACATATCGAAAAC+AGG - chr1_1:74632507-74632526 None:intergenic 35.0%
CACATTTAATAGTAGTGCCA+GGG - chr1_1:74632635-74632654 None:intergenic 35.0%
ACACATTTAATAGTAGTGCC+AGG - chr1_1:74632636-74632655 None:intergenic 35.0%
!!! TGTTATTTTTCTGGTTACCC+AGG + chr1_1:74632707-74632726 Msa0043500:intron 35.0%
AGTGGCAGTAATTTAAGCAA+TGG + chr1_1:74632804-74632823 Msa0043500:CDS 35.0%
! GGAAGTTCTAGCAAAATTTC+TGG + chr1_1:74632825-74632844 Msa0043500:CDS 35.0%
!! ATTTCTGGTGAAGATTCCAA+AGG + chr1_1:74632840-74632859 Msa0043500:CDS 35.0%
ATGGTTCAACCTCAATCTTA+AGG + chr1_1:74632920-74632939 Msa0043500:CDS 35.0%
TGGTTCAACCTCAATCTTAA+GGG + chr1_1:74632921-74632940 Msa0043500:CDS 35.0%
TCGGAAAATTTGAGTCTCAT+TGG - chr1_1:74633205-74633224 None:intergenic 35.0%
ATATGTTGAGGATGCTACAA+GGG - chr1_1:74633230-74633249 None:intergenic 35.0%
TATATGTTGAGGATGCTACA+AGG - chr1_1:74633231-74633250 None:intergenic 35.0%
AGGCTTGATAAAGGAAAAGA+AGG - chr1_1:74633305-74633324 None:intergenic 35.0%
! TTTTCCTTTATCAAGCCTTG+CGG + chr1_1:74633307-74633326 Msa0043500:three_prime_UTR 35.0%
! TAGTAATATTTTGTGCCGCA+AGG - chr1_1:74633325-74633344 None:intergenic 35.0%
! ACCTCGGAATGTGTTTGTTA+GGG - chr1_1:74627600-74627619 None:intergenic 40.0%
TACCTCGGAATGTGTTTGTT+AGG - chr1_1:74627601-74627620 None:intergenic 40.0%
! GATTCAAAGTGGCATTGGAT+CGG - chr1_1:74627625-74627644 None:intergenic 40.0%
GAAAAGAGAGAGATTATGGG+TGG - chr1_1:74627653-74627672 None:intergenic 40.0%
TAAAGAGAAAGAGAGGCTTC+AGG + chr1_1:74627863-74627882 Msa0043500:five_prime_UTR 40.0%
CAGGTCTATGGATCAAAAGA+TGG + chr1_1:74627882-74627901 Msa0043500:exon 40.0%
GAAACGCCTAAAACTTCGTA+AGG - chr1_1:74627940-74627959 None:intergenic 40.0%
! GAGAGCAAGTTTTCTGTAAG+CGG - chr1_1:74627992-74628011 None:intergenic 40.0%
GGGTTCTACAGTTGTACTAA+TGG - chr1_1:74628141-74628160 None:intergenic 40.0%
!! ACTAAAGGTTGGTGCCTTTA+GGG - chr1_1:74628212-74628231 None:intergenic 40.0%
GGGTTGTGATGATTTGAATG+AGG - chr1_1:74628427-74628446 None:intergenic 40.0%
!! TATAGTGAGATAGCGGATAG+GGG - chr1_1:74628784-74628803 None:intergenic 40.0%
!! CTATAGTGAGATAGCGGATA+GGG - chr1_1:74628785-74628804 None:intergenic 40.0%
GATTGTTGGCATTCTTGTCA+GGG - chr1_1:74628883-74628902 None:intergenic 40.0%
!! TTCTGAAGCTTCAGGATTGT+TGG - chr1_1:74628897-74628916 None:intergenic 40.0%
TATCTGACCCAGAAAAGAGA+AGG + chr1_1:74628951-74628970 Msa0043500:CDS 40.0%
TGGATTCACATGGAAAGAAG+AGG - chr1_1:74629012-74629031 None:intergenic 40.0%
!! AGAAGAGCTTTGGATTCACA+TGG - chr1_1:74629022-74629041 None:intergenic 40.0%
! TTTATCTCTCCCTCCCTTTT+TGG + chr1_1:74629051-74629070 Msa0043500:intron 40.0%
CACTCAAATTCCAAGTTGCA+GGG - chr1_1:74629310-74629329 None:intergenic 40.0%
TCACTCAAATTCCAAGTTGC+AGG - chr1_1:74629311-74629330 None:intergenic 40.0%
!! TTTGCAGCTTTATTCAGGTG+TGG + chr1_1:74629821-74629840 Msa0043500:intron 40.0%
!! TTGCAGCTTTATTCAGGTGT+GGG + chr1_1:74629822-74629841 Msa0043500:intron 40.0%
! CCGAAATGGTAGTCTTGATT+GGG - chr1_1:74629936-74629955 None:intergenic 40.0%
CCCAATCAAGACTACCATTT+CGG + chr1_1:74629933-74629952 Msa0043500:CDS 40.0%
CAATCTGATGCCATATTAGC+CGG - chr1_1:74630261-74630280 None:intergenic 40.0%
TTTCGAACAAGATGCAAACG+GGG + chr1_1:74630313-74630332 Msa0043500:CDS 40.0%
!! TCCCTACGTTCCTTTTTAAG+TGG + chr1_1:74630367-74630386 Msa0043500:intron 40.0%
CACCACTTAAAAAGGAACGT+AGG - chr1_1:74630372-74630391 None:intergenic 40.0%
!! GGAGTAAAAGAAGAAGCACT+AGG - chr1_1:74630645-74630664 None:intergenic 40.0%
TTGATACACTCACCATGAGT+AGG + chr1_1:74630719-74630738 Msa0043500:intron 40.0%
TTACAACCTCAACCTACTCA+TGG - chr1_1:74630734-74630753 None:intergenic 40.0%
GTAAAAGGGAAATGGAGATG+AGG - chr1_1:74631022-74631041 None:intergenic 40.0%
AACAGCACGAATTTCTATGG+TGG + chr1_1:74631135-74631154 Msa0043500:intron 40.0%
ATTCAACTGTGAATGCGGTA+TGG + chr1_1:74631534-74631553 Msa0043500:intron 40.0%
!!! AGTGGTCACTTTTAGTGTTG+TGG + chr1_1:74631604-74631623 Msa0043500:intron 40.0%
AGATACCACCCAAAAACTTC+AGG + chr1_1:74631897-74631916 Msa0043500:CDS 40.0%
GCCTGAAACGTATTCAGAAA+AGG - chr1_1:74632047-74632066 None:intergenic 40.0%
TCTGAATACGTTTCAGGCAT+TGG + chr1_1:74632049-74632068 Msa0043500:intron 40.0%
ACAACTTAATGGAGCAGATG+GGG - chr1_1:74632261-74632280 None:intergenic 40.0%
CACAACTTAATGGAGCAGAT+GGG - chr1_1:74632262-74632281 None:intergenic 40.0%
! TCTAGCTTGCCACAACTTAA+TGG - chr1_1:74632272-74632291 None:intergenic 40.0%
! AGTTGCAGATTTTTCTCACC+TGG + chr1_1:74632294-74632313 Msa0043500:intron 40.0%
! TTTTTCTCACCTGGCTTACT+TGG + chr1_1:74632303-74632322 Msa0043500:intron 40.0%
TCTGCAGAAATGGTGAAAAC+AGG - chr1_1:74632523-74632542 None:intergenic 40.0%
ACAGTGAGAATCTGCAGAAA+TGG - chr1_1:74632533-74632552 None:intergenic 40.0%
!! TAGATGAGCTTCTGAAGCAA+AGG + chr1_1:74632730-74632749 Msa0043500:CDS 40.0%
!! AGATGAGCTTCTGAAGCAAA+GGG + chr1_1:74632731-74632750 Msa0043500:CDS 40.0%
TGACAATGGTGAAGGTAGAA+TGG - chr1_1:74632764-74632783 None:intergenic 40.0%
AAGTTTGATCCCATGACTGA+TGG - chr1_1:74633023-74633042 None:intergenic 40.0%
ACTACACCCAATATATCCAC+GGG - chr1_1:74633053-74633072 None:intergenic 40.0%
CACTACACCCAATATATCCA+CGG - chr1_1:74633054-74633073 None:intergenic 40.0%
!! TTGGTTTGTGATGCAGTCAA+AGG + chr1_1:74633139-74633158 Msa0043500:three_prime_UTR 40.0%
! AAACCAAAGCAGCATTGGGA+TGG + chr1_1:74627366-74627385 Msa0043500:five_prime_UTR 45.0%
TGTAAGACCAAGTTGCGAGA+TGG - chr1_1:74627453-74627472 None:intergenic 45.0%
TCCCTAACAAACACATTCCG+AGG + chr1_1:74627596-74627615 Msa0043500:five_prime_UTR 45.0%
AAAGAGAGGCTTCAGGTCTA+TGG + chr1_1:74627870-74627889 Msa0043500:exon 45.0%
! CGTGACCCTTACGAAGTTTT+AGG + chr1_1:74627931-74627950 Msa0043500:CDS 45.0%
!!! CGAAGTTTTAGGCGTTTCCA+AGG + chr1_1:74627942-74627961 Msa0043500:CDS 45.0%
TTCCAAGGAATCATCCGATC+AGG + chr1_1:74627957-74627976 Msa0043500:CDS 45.0%
TTCCTGATCGGATGATTCCT+TGG - chr1_1:74627962-74627981 None:intergenic 45.0%
!! GACTAAAGGTTGGTGCCTTT+AGG - chr1_1:74628213-74628232 None:intergenic 45.0%
AGAGGGTGAAAACTGATAGC+AGG - chr1_1:74628679-74628698 None:intergenic 45.0%
!! ATAGTGAGATAGCGGATAGG+GGG - chr1_1:74628783-74628802 None:intergenic 45.0%
!! GCTATAGTGAGATAGCGGAT+AGG - chr1_1:74628786-74628805 None:intergenic 45.0%
!!! CACTATAGCTTTTCTAGGGC+CGG + chr1_1:74628797-74628816 Msa0043500:intron 45.0%
GGATTGTTGGCATTCTTGTC+AGG - chr1_1:74628884-74628903 None:intergenic 45.0%
! CGTACTGCCTTCTCTTTTCT+GGG - chr1_1:74628961-74628980 None:intergenic 45.0%
! TCGTACTGCCTTCTCTTTTC+TGG - chr1_1:74628962-74628981 None:intergenic 45.0%
TTCATGCTGCCAAAAAGGGA+GGG - chr1_1:74629063-74629082 None:intergenic 45.0%
TTTCATGCTGCCAAAAAGGG+AGG - chr1_1:74629064-74629083 None:intergenic 45.0%
TCAAATTCCAAGTTGCAGGG+AGG - chr1_1:74629307-74629326 None:intergenic 45.0%
GAAACGCAAAAGAGCTTTCG+AGG - chr1_1:74629663-74629682 None:intergenic 45.0%
TGATGCTGATAGCATGGACA+TGG + chr1_1:74629760-74629779 Msa0043500:CDS 45.0%
! GCCGAAATGGTAGTCTTGAT+TGG - chr1_1:74629937-74629956 None:intergenic 45.0%
ACAGATGTTCCCATTGGAAG+GGG - chr1_1:74630003-74630022 None:intergenic 45.0%
GACAGATGTTCCCATTGGAA+GGG - chr1_1:74630004-74630023 None:intergenic 45.0%
TGACAGATGTTCCCATTGGA+AGG - chr1_1:74630005-74630024 None:intergenic 45.0%
TTCGAACAAGATGCAAACGG+GGG + chr1_1:74630314-74630333 Msa0043500:CDS 45.0%
AACAAGTCGAAGGGAGATGA+GGG - chr1_1:74630666-74630685 None:intergenic 45.0%
! ATTCAACTGCAGAAGCGTGA+AGG - chr1_1:74630828-74630847 None:intergenic 45.0%
! ACTGGCGTTTTCTTCAAGCA+TGG + chr1_1:74630923-74630942 Msa0043500:intron 45.0%
AACAGGAAACACAAGGCCAA+AGG - chr1_1:74631172-74631191 None:intergenic 45.0%
CAGGAAGATAGTGAGAAGAC+TGG + chr1_1:74631458-74631477 Msa0043500:intron 45.0%
! TTTCTTTGTTGCGGGCTGTT+TGG + chr1_1:74631579-74631598 Msa0043500:intron 45.0%
!! CTTTTAAAGAAAGCCCCCTC+AGG - chr1_1:74631653-74631672 None:intergenic 45.0%
CTGAGGGGGCTTTCTTTAAA+AGG + chr1_1:74631651-74631670 Msa0043500:CDS 45.0%
! GGGGGCTTTCTTTAAAAGGT+TGG + chr1_1:74631655-74631674 Msa0043500:CDS 45.0%
GAAGTTTCGGAACTAAAGCC+TGG + chr1_1:74631695-74631714 Msa0043500:CDS 45.0%
ACGGCAAATATATGTGTGCC+AGG - chr1_1:74631716-74631735 None:intergenic 45.0%
TGATGATCAGCTATGCTGTG+GGG - chr1_1:74632228-74632247 None:intergenic 45.0%
CTGATGATCAGCTATGCTGT+GGG - chr1_1:74632229-74632248 None:intergenic 45.0%
ACTGATGATCAGCTATGCTG+TGG - chr1_1:74632230-74632249 None:intergenic 45.0%
CCACAACTTAATGGAGCAGA+TGG - chr1_1:74632263-74632282 None:intergenic 45.0%
! CCATCTGCTCCATTAAGTTG+TGG + chr1_1:74632260-74632279 Msa0043500:intron 45.0%
CTTCAGAAGCTCATCTACCT+GGG - chr1_1:74632727-74632746 None:intergenic 45.0%
!! AGTACTGGTTGGCTTGACAA+TGG - chr1_1:74632778-74632797 None:intergenic 45.0%
AGATGGAGGGTCAGATAGTA+AGG + chr1_1:74632878-74632897 Msa0043500:CDS 45.0%
CAACCTCAATCTTAAGGGCT+CGG + chr1_1:74632926-74632945 Msa0043500:CDS 45.0%
AACCTCAATCTTAAGGGCTC+GGG + chr1_1:74632927-74632946 Msa0043500:CDS 45.0%
CTTGAGTGACCATCAGTCAT+GGG + chr1_1:74633011-74633030 Msa0043500:three_prime_UTR 45.0%
ATCAAACTTAAAGCAGCCCG+TGG + chr1_1:74633034-74633053 Msa0043500:three_prime_UTR 45.0%
AAAGCAGCCCGTGGATATAT+TGG + chr1_1:74633043-74633062 Msa0043500:three_prime_UTR 45.0%
AAGCAGCCCGTGGATATATT+GGG + chr1_1:74633044-74633063 Msa0043500:three_prime_UTR 45.0%
GGTTCCTCAAAGTTGTGAAC+TGG + chr1_1:74633100-74633119 Msa0043500:three_prime_UTR 45.0%
CCAACCAGTTCACAACTTTG+AGG - chr1_1:74633107-74633126 None:intergenic 45.0%
CCTCAAAGTTGTGAACTGGT+TGG + chr1_1:74633104-74633123 Msa0043500:three_prime_UTR 45.0%
TGAGGATGCTACAAGGGAAT+CGG - chr1_1:74633224-74633243 None:intergenic 45.0%
! GGTTTGGTTTCGCTAGAGTC+AGG - chr1_1:74627483-74627502 None:intergenic 50.0%
! TGGCATTGGATCGGTTACCT+CGG - chr1_1:74627616-74627635 None:intergenic 50.0%
CACGCGATTCAAAGTGGCAT+TGG - chr1_1:74627630-74627649 None:intergenic 50.0%
TAAGGGTCACGTCGAATTGC+TGG - chr1_1:74627922-74627941 None:intergenic 50.0%
ACCCTAATCCCTCTCCCTAA+AGG + chr1_1:74628195-74628214 Msa0043500:intron 50.0%
! GCCTTTAGGGAGAGGGATTA+GGG - chr1_1:74628199-74628218 None:intergenic 50.0%
! TGCCTTTAGGGAGAGGGATT+AGG - chr1_1:74628200-74628219 None:intergenic 50.0%
ATCTTGTCAGGGGCAACCTT+AGG - chr1_1:74628392-74628411 None:intergenic 50.0%
CTGTTGCTAGAGTAGCACCT+TGG + chr1_1:74628532-74628551 Msa0043500:intron 50.0%
GGATAGCAGAGCATAGTGTC+CGG - chr1_1:74628819-74628838 None:intergenic 50.0%
GTACGACAGTGCAGGATTTG+AGG + chr1_1:74628976-74628995 Msa0043500:CDS 50.0%
ATGGCAAGCTCCCCAGAAAA+GGG - chr1_1:74629181-74629200 None:intergenic 50.0%
CATATTGCCTCCCTGCAACT+TGG + chr1_1:74629297-74629316 Msa0043500:intron 50.0%
GGCACTTGATGCTGATAGCA+TGG + chr1_1:74629754-74629773 Msa0043500:intron 50.0%
TACAGTCAGACCCCTTCCAA+TGG + chr1_1:74629990-74630009 Msa0043500:CDS 50.0%
ACAGTCAGACCCCTTCCAAT+GGG + chr1_1:74629991-74630010 Msa0043500:CDS 50.0%
CCACTGACAGATGTTCCCAT+TGG - chr1_1:74630009-74630028 None:intergenic 50.0%
CCAATGGGAACATCTGTCAG+TGG + chr1_1:74630006-74630025 Msa0043500:CDS 50.0%
GGGAACATCTGTCAGTGGAA+AGG + chr1_1:74630011-74630030 Msa0043500:CDS 50.0%
AATGAGCAGCAAGCTGAGTC+CGG + chr1_1:74630163-74630182 Msa0043500:CDS 50.0%
GGGCTATGGTTTAGCATTGC+AGG + chr1_1:74630334-74630353 Msa0043500:CDS 50.0%
CAACAAGTCGAAGGGAGATG+AGG - chr1_1:74630667-74630686 None:intergenic 50.0%
CACTCACCATGAGTAGGTTG+AGG + chr1_1:74630725-74630744 Msa0043500:intron 50.0%
TCTCACAGGCAGATATCCCA+TGG + chr1_1:74630857-74630876 Msa0043500:intron 50.0%
GAAATGGAGATGAGGGTGGA+GGG - chr1_1:74631014-74631033 None:intergenic 50.0%
AAGGGAAATGGAGATGAGGG+TGG - chr1_1:74631018-74631037 None:intergenic 50.0%
ACTGGCAAAGTGACATCTGC+TGG + chr1_1:74631476-74631495 Msa0043500:CDS 50.0%
TGTTGTGGTGCAGTTAGCGA+TGG + chr1_1:74631619-74631638 Msa0043500:intron 50.0%
GCTTCAGAAGCTCATCTACC+TGG - chr1_1:74632728-74632747 None:intergenic 50.0%
!! GAGCTTCTGAAGCAAAGGGA+CGG + chr1_1:74632735-74632754 Msa0043500:CDS 50.0%
!! GGTTGGCTTGACAATGGTGA+AGG - chr1_1:74632772-74632791 None:intergenic 50.0%
GTCAAGCCAACCAGTACTAG+TGG + chr1_1:74632780-74632799 Msa0043500:CDS 50.0%
!! CCACTTCCACTAGTACTGGT+TGG - chr1_1:74632789-74632808 None:intergenic 50.0%
CCAACCAGTACTAGTGGAAG+TGG + chr1_1:74632786-74632805 Msa0043500:CDS 50.0%
! ACTGCCACTTCCACTAGTAC+TGG - chr1_1:74632793-74632812 None:intergenic 50.0%
ATTCCAAAGGTGAGAGCCCT+GGG + chr1_1:74632853-74632872 Msa0043500:CDS 50.0%
AACCCGAGCCCTTAAGATTG+AGG - chr1_1:74632932-74632951 None:intergenic 50.0%
GCTTGAGTGACCATCAGTCA+TGG + chr1_1:74633010-74633029 Msa0043500:three_prime_UTR 50.0%
TGTGCCGCAAGGCTTGATAA+AGG - chr1_1:74633314-74633333 None:intergenic 50.0%
! TGGCCATCCCAATGCTGCTT+TGG - chr1_1:74627372-74627391 None:intergenic 55.0%
AAGGACGCCATCTCGCAACT+TGG + chr1_1:74627443-74627462 Msa0043500:five_prime_UTR 55.0%
! GGTTGGTGCCTTTAGGGAGA+GGG - chr1_1:74628206-74628225 None:intergenic 55.0%
!! AGGTTGGTGCCTTTAGGGAG+AGG - chr1_1:74628207-74628226 None:intergenic 55.0%
!! TGAGATAGCGGATAGGGGGA+TGG - chr1_1:74628779-74628798 None:intergenic 55.0%
AGAAGGCAGTACGACAGTGC+AGG + chr1_1:74628968-74628987 Msa0043500:CDS 55.0%
GATGGCAAGCTCCCCAGAAA+AGG - chr1_1:74629182-74629201 None:intergenic 55.0%
ATGAGCAGCAAGCTGAGTCC+GGG + chr1_1:74630164-74630183 Msa0043500:CDS 55.0%
CAAGATGCAAACGGGGGCTA+TGG + chr1_1:74630320-74630339 Msa0043500:CDS 55.0%
TGTAAGCAGTCCCAACCACC+TGG + chr1_1:74630749-74630768 Msa0043500:intron 55.0%
GTAAGCAGTCCCAACCACCT+GGG + chr1_1:74630750-74630769 Msa0043500:intron 55.0%
TAAGCAGTCCCAACCACCTG+GGG + chr1_1:74630751-74630770 Msa0043500:intron 55.0%
GGAAATGGAGATGAGGGTGG+AGG - chr1_1:74631015-74631034 None:intergenic 55.0%
GGTGGCTGCTAACAAGCCTT+TGG + chr1_1:74631153-74631172 Msa0043500:intron 55.0%
! GTTGCGGGCTGTTTGGAAAG+TGG + chr1_1:74631586-74631605 Msa0043500:intron 55.0%
!! TCAGGCATTGGCACGCTATC+AGG + chr1_1:74632061-74632080 Msa0043500:intron 55.0%
ATCGGCAAGCCAAGTAAGCC+AGG - chr1_1:74632315-74632334 None:intergenic 55.0%
GATTCCAAAGGTGAGAGCCC+TGG + chr1_1:74632852-74632871 Msa0043500:CDS 55.0%
TTCCAAAGGTGAGAGCCCTG+GGG + chr1_1:74632854-74632873 Msa0043500:CDS 55.0%
GGGTGGCACGCGATTCAAAG+TGG - chr1_1:74627636-74627655 None:intergenic 60.0%
TGTTCTCGCCCCAGGTGGTT+GGG - chr1_1:74630762-74630781 None:intergenic 60.0%
ATGTTCTCGCCCCAGGTGGT+TGG - chr1_1:74630763-74630782 None:intergenic 60.0%
AACCACCTGGGGCGAGAACA+TGG + chr1_1:74630762-74630781 Msa0043500:intron 60.0%
ACCACCTGGGGCGAGAACAT+GGG + chr1_1:74630763-74630782 Msa0043500:intron 60.0%
TGGAGATGAGGGTGGAGGGA+GGG - chr1_1:74631010-74631029 None:intergenic 60.0%
ATGGAGATGAGGGTGGAGGG+AGG - chr1_1:74631011-74631030 None:intergenic 60.0%
GGTGCAGTTAGCGATGGCCA+AGG + chr1_1:74631625-74631644 Msa0043500:intron 60.0%
AGCGATGGCCAAGGATCCTG+AGG + chr1_1:74631634-74631653 Msa0043500:CDS 60.0%
GCGATGGCCAAGGATCCTGA+GGG + chr1_1:74631635-74631654 Msa0043500:CDS 60.0%
CGATGGCCAAGGATCCTGAG+GGG + chr1_1:74631636-74631655 Msa0043500:CDS 60.0%
GATGGCCAAGGATCCTGAGG+GGG + chr1_1:74631637-74631656 Msa0043500:CDS 60.0%
GAAAGCCCCCTCAGGATCCT+TGG - chr1_1:74631645-74631664 None:intergenic 60.0%
TTCCCCAGGGCTCTCACCTT+TGG - chr1_1:74632859-74632878 None:intergenic 60.0%
AGAGCCCTGGGGAAGATGGA+GGG + chr1_1:74632865-74632884 Msa0043500:CDS 60.0%
CTGACCCTCCATCTTCCCCA+GGG - chr1_1:74632872-74632891 None:intergenic 60.0%
TCTGACCCTCCATCTTCCCC+AGG - chr1_1:74632873-74632892 None:intergenic 60.0%
TCCCATGTTCTCGCCCCAGG+TGG - chr1_1:74630767-74630786 None:intergenic 65.0%
GAGTCCCATGTTCTCGCCCC+AGG - chr1_1:74630770-74630789 None:intergenic 65.0%
GGTGAGAGCCCTGGGGAAGA+TGG + chr1_1:74632861-74632880 Msa0043500:CDS 65.0%
GAGAGCCCTGGGGAAGATGG+AGG + chr1_1:74632864-74632883 Msa0043500:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 74627344 74633375 74627344 ID=Msa0043500;Name=Msa0043500
chr1_1 mRNA 74627344 74633375 74627344 ID=Msa0043500-mRNA-1;Parent=Msa0043500;Name=Msa0043500-mRNA-1;_AED=0.12;_eAED=0.12;_QI=336|1|1|1|0.90|0.83|12|404|414
chr1_1 exon 74627344 74627617 74627344 ID=Msa0043500-mRNA-1:exon:25136;Parent=Msa0043500-mRNA-1
chr1_1 exon 74627827 74628013 74627827 ID=Msa0043500-mRNA-1:exon:25137;Parent=Msa0043500-mRNA-1
chr1_1 exon 74628874 74628997 74628874 ID=Msa0043500-mRNA-1:exon:25138;Parent=Msa0043500-mRNA-1
chr1_1 exon 74629755 74629837 74629755 ID=Msa0043500-mRNA-1:exon:25139;Parent=Msa0043500-mRNA-1
chr1_1 exon 74629921 74630032 74629921 ID=Msa0043500-mRNA-1:exon:25140;Parent=Msa0043500-mRNA-1
chr1_1 exon 74630124 74630228 74630124 ID=Msa0043500-mRNA-1:exon:25141;Parent=Msa0043500-mRNA-1
chr1_1 exon 74630305 74630355 74630305 ID=Msa0043500-mRNA-1:exon:25142;Parent=Msa0043500-mRNA-1
chr1_1 exon 74631461 74631550 74631461 ID=Msa0043500-mRNA-1:exon:25143;Parent=Msa0043500-mRNA-1
chr1_1 exon 74631632 74631740 74631632 ID=Msa0043500-mRNA-1:exon:25144;Parent=Msa0043500-mRNA-1
chr1_1 exon 74631836 74631984 74631836 ID=Msa0043500-mRNA-1:exon:25145;Parent=Msa0043500-mRNA-1
chr1_1 exon 74632065 74632118 74632065 ID=Msa0043500-mRNA-1:exon:25146;Parent=Msa0043500-mRNA-1
chr1_1 exon 74632729 74633375 74632729 ID=Msa0043500-mRNA-1:exon:25147;Parent=Msa0043500-mRNA-1
chr1_1 five_prime_UTR 74627344 74627617 74627344 ID=Msa0043500-mRNA-1:five_prime_utr;Parent=Msa0043500-mRNA-1
chr1_1 five_prime_UTR 74627827 74627888 74627827 ID=Msa0043500-mRNA-1:five_prime_utr;Parent=Msa0043500-mRNA-1
chr1_1 CDS 74627889 74628013 74627889 ID=Msa0043500-mRNA-1:cds;Parent=Msa0043500-mRNA-1
chr1_1 CDS 74628874 74628997 74628874 ID=Msa0043500-mRNA-1:cds;Parent=Msa0043500-mRNA-1
chr1_1 CDS 74629755 74629837 74629755 ID=Msa0043500-mRNA-1:cds;Parent=Msa0043500-mRNA-1
chr1_1 CDS 74629921 74630032 74629921 ID=Msa0043500-mRNA-1:cds;Parent=Msa0043500-mRNA-1
chr1_1 CDS 74630124 74630228 74630124 ID=Msa0043500-mRNA-1:cds;Parent=Msa0043500-mRNA-1
chr1_1 CDS 74630305 74630355 74630305 ID=Msa0043500-mRNA-1:cds;Parent=Msa0043500-mRNA-1
chr1_1 CDS 74631461 74631550 74631461 ID=Msa0043500-mRNA-1:cds;Parent=Msa0043500-mRNA-1
chr1_1 CDS 74631632 74631740 74631632 ID=Msa0043500-mRNA-1:cds;Parent=Msa0043500-mRNA-1
chr1_1 CDS 74631836 74631984 74631836 ID=Msa0043500-mRNA-1:cds;Parent=Msa0043500-mRNA-1
chr1_1 CDS 74632065 74632118 74632065 ID=Msa0043500-mRNA-1:cds;Parent=Msa0043500-mRNA-1
chr1_1 CDS 74632729 74632971 74632729 ID=Msa0043500-mRNA-1:cds;Parent=Msa0043500-mRNA-1
chr1_1 three_prime_UTR 74632972 74633375 74632972 ID=Msa0043500-mRNA-1:three_prime_utr;Parent=Msa0043500-mRNA-1
Gene Sequence

>Msa0043500

ATGGATCAAAAGATGGAAGGAACGTCTGCACCAGCAATTCGACGTGACCCTTACGAAGTTTTAGGCGTTTCCAAGGAATCATCCGATCAGGAAATTAAAACCGCTTACAGAAAACTTGCTCTCAAGTATCACCCTGACAAGAATGCCAACAATCCTGAAGCTTCAGAACTATTCAAAGAGGTTGCATATTCTTATAATATCTTATCTGACCCAGAAAAGAGAAGGCAGTACGACAGTGCAGGATTTGAGGCACTTGATGCTGATAGCATGGACATGGAAATCGATTTATCTAATCTTGGGACTGTGAACACAATGTTTGCAGCTTTATTCAGCAAGCTGGGTGTCCCAATCAAGACTACCATTTCGGCTAATGTTCTTGAAGAAGCTTTGAATGGCACTGTTACAGTCAGACCCCTTCCAATGGGAACATCTGTCAGTGGAAAGGTAGAGAAGCAATGTGCTCATTTTTTTGGTGTGACAATAAATGAGCAGCAAGCTGAGTCCGGGATTGTAGTAAGAGTTACTTCAACTGCACAAAGCAAATTCAAGTTGCTCTATTTCGAACAAGATGCAAACGGGGGCTATGGTTTAGCATTGCAGGAAGATAGTGAGAAGACTGGCAAAGTGACATCTGCTGGAATGTATTTCTTACATTTTCAAGTGTACAGAATGGATTCAACTGTGAATGCGTTAGCGATGGCCAAGGATCCTGAGGGGGCTTTCTTTAAAAGGTTGGAAGGTCTTCAACCTTGTGAAGTTTCGGAACTAAAGCCTGGCACACATATATTTGCCGTTTATGGCGATAACTTCTTTAAGACTGCTAGCTATACAATTGAAGCAGTATGTGCAAAATCACATGAAGATACCACCCAAAAACTTCAGGATATTGAGGCTCAAATTTTAAGAAAGAGGAATGAGCTACGGCAATTCGAATCAGAATATAGAAAGGCATTGGCACGCTATCAGGAAGTGACAGACAGATACACAAAAGAAAAACAGTCTGTAGATGAGCTTCTGAAGCAAAGGGACGGTATCCATTCTACCTTCACCATTGTCAAGCCAACCAGTACTAGTGGAAGTGGCAGTAATTTAAGCAATGGAAGTTCTAGCAAAATTTCTGGTGAAGATTCCAAAGGTGAGAGCCCTGGGGAAGATGGAGGGTCAGATAGTAAGGATAAATCAGGCAAAAAGAAATGGTTCAACCTCAATCTTAAGGGCTCGGGTTCTGATAAGAAGTTGATTTAA
Protein sequence

>Msa0043500

MDQKMEGTSAPAIRRDPYEVLGVSKESSDQEIKTAYRKLALKYHPDKNANNPEASELFKEVAYSYNILSDPEKRRQYDSAGFEALDADSMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPMGTSVSGKVEKQCAHFFGVTINEQQAESGIVVRVTSTAQSKFKLLYFEQDANGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEGAFFKRLEGLQPCEVSELKPGTHIFAVYGDNFFKTASYTIEAVCAKSHEDTTQKLQDIEAQILRKRNELRQFESEYRKALARYQEVTDRYTKEKQSVDELLKQRDGIHSTFTIVKPTSTSGSGSNLSNGSSSKISGEDSKGESPGEDGGSDSKDKSGKKKWFNLNLKGSGSDKKLI*