AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0043650

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0043650 MtrunA17_Chr1g0209551 100.000 414 0 0 1 414 1 414 0.0 857
Msa0043650 MtrunA17_Chr5g0414471 61.461 397 138 3 13 405 22 407 0.0 514
Msa0043650 MtrunA17_Chr7g0269841 58.824 68 28 0 18 85 28 95 2.61e-17 82.8
Msa0043650 MtrunA17_Chr4g0010781 52.055 73 35 0 12 84 82 154 2.41e-16 80.5
Msa0043650 MtrunA17_Chr3g0087741 50.649 77 37 1 9 85 83 158 2.85e-16 80.5
Msa0043650 MtrunA17_Chr6g0478651 46.078 102 44 3 15 112 67 161 7.04e-16 79.3
Msa0043650 MtrunA17_Chr3g0123861 58.571 70 28 1 16 85 82 150 1.99e-15 77.8
Msa0043650 MtrunA17_Chr3g0088221 62.500 56 21 0 106 161 22 77 5.14e-15 70.1
Msa0043650 MtrunA17_Chr4g0006391 49.296 71 35 1 16 85 4 74 8.22e-15 75.1
Msa0043650 MtrunA17_Chr7g0271891 43.836 73 37 1 18 86 18 90 8.75e-15 72.0
Msa0043650 MtrunA17_Chr2g0282741 49.296 71 35 1 16 85 4 74 1.59e-14 74.3
Msa0043650 MtrunA17_Chr4g0040501 49.296 71 35 1 16 85 4 74 1.90e-14 74.3
Msa0043650 MtrunA17_Chr2g0282761 52.239 67 31 1 16 81 4 70 2.65e-14 73.6
Msa0043650 MtrunA17_Chr3g0138471 47.887 71 36 1 16 85 4 74 2.77e-14 73.6
Msa0043650 MtrunA17_Chr7g0258061 43.750 96 47 3 18 113 24 112 3.76e-14 72.4
Msa0043650 MtrunA17_Chr7g0263971 51.515 66 31 1 14 78 367 432 4.83e-14 73.6
Msa0043650 MtrunA17_Chr4g0021141 43.284 67 38 0 15 81 21 87 5.30e-14 68.9
Msa0043650 MtrunA17_Chr2g0328581 55.556 63 27 1 17 79 76 137 5.65e-14 70.5
Msa0043650 MtrunA17_Chr8g0334811 52.941 68 28 1 18 85 16 79 6.17e-14 73.2
Msa0043650 MtrunA17_Chr5g0399201 48.684 76 36 1 15 87 11 86 1.10e-13 72.8
Msa0043650 MtrunA17_Chr7g0242951 48.684 76 31 2 16 84 27 101 4.42e-13 70.9
Msa0043650 MtrunA17_Chr2g0324921 47.887 71 36 1 16 85 4 74 5.16e-13 69.7
Msa0043650 MtrunA17_Chr5g0427221 31.776 107 65 1 15 121 47 145 6.42e-13 65.9
Msa0043650 MtrunA17_Chr5g0393371 40.860 93 46 2 18 110 8 91 8.41e-13 69.7
Msa0043650 MtrunA17_Chr4g0061421 43.373 83 43 1 10 88 2 84 1.78e-12 69.3
Msa0043650 MtrunA17_Chr1g0173931 40.625 96 51 2 18 113 40 129 3.10e-12 67.0
Msa0043650 MtrunA17_Chr2g0333221 48.571 70 35 1 12 81 66 134 3.12e-12 68.2
Msa0043650 MtrunA17_Chr8g0344721 41.558 77 39 1 16 86 10 86 5.19e-12 65.5
Msa0043650 MtrunA17_Chr8g0352451 45.205 73 40 0 18 90 74 146 9.68e-12 66.2
Msa0043650 MtrunA17_Chr8g0371891 47.059 68 34 1 18 83 49 116 1.14e-11 62.4
Msa0043650 MtrunA17_Chr1g0159491 42.188 64 37 0 18 81 8 71 1.65e-11 60.1
Msa0043650 MtrunA17_Chr5g0426951 46.875 64 34 0 15 78 82 145 1.76e-11 65.9
Msa0043650 MtrunA17_Chr1g0206121 47.692 65 33 1 16 80 35 98 1.89e-11 64.7
Msa0043650 MtrunA17_Chr1g0159511 39.726 73 44 0 18 90 8 80 2.02e-11 65.1
Msa0043650 MtrunA17_Chr4g0044331 43.939 66 33 1 22 83 18 83 2.71e-11 61.6
Msa0043650 MtrunA17_Chr2g0295821 47.761 67 34 1 16 82 104 169 5.46e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0043650 AT1G68370.1 84.019 413 57 4 3 413 4 409 0.0 719
Msa0043650 AT1G24120.1 57.590 415 152 2 13 405 17 429 1.50e-177 502
Msa0043650 AT1G59980.1 52.618 401 179 3 14 412 21 412 5.67e-149 429
Msa0043650 AT1G59980.2 55.952 336 147 1 14 349 21 355 1.03e-137 398
Msa0043650 AT1G59980.3 51.117 358 164 3 57 412 1 349 7.29e-124 363
Msa0043650 AT3G62600.1 57.353 68 29 0 18 85 28 95 6.21e-16 79.0
Msa0043650 AT5G01390.3 51.389 72 34 1 16 86 4 75 8.06e-16 77.0
Msa0043650 AT5G01390.4 51.389 72 34 1 16 86 4 75 1.02e-15 76.6
Msa0043650 AT5G01390.2 51.389 72 34 1 16 86 4 75 1.40e-15 77.0
Msa0043650 AT2G20560.1 50.704 71 34 1 16 85 4 74 1.67e-15 77.8
Msa0043650 AT4G28480.2 50.704 71 34 1 16 85 4 74 1.78e-15 77.0
Msa0043650 AT5G01390.1 51.389 72 34 1 16 86 4 75 2.66e-15 77.0
Msa0043650 AT4G28480.1 50.704 71 34 1 16 85 4 74 2.92e-15 77.0
Msa0043650 AT3G08910.1 50.704 71 34 1 16 85 4 74 3.83e-15 76.3
Msa0043650 AT5G48030.1 50.667 75 37 0 15 89 93 167 5.21e-15 77.0
Msa0043650 AT2G22360.1 49.398 83 41 1 16 98 86 167 4.75e-14 73.9
Msa0043650 AT5G03160.1 51.515 66 31 1 14 78 368 433 5.23e-14 73.9
Msa0043650 AT1G74250.1 44.828 87 43 1 7 88 2 88 6.95e-14 73.9
Msa0043650 AT2G21510.3 46.575 73 39 0 18 90 8 80 6.98e-14 72.8
Msa0043650 AT2G21510.1 46.575 73 39 0 18 90 8 80 6.98e-14 72.8
Msa0043650 AT2G21510.2 46.575 73 39 0 18 90 8 80 7.06e-14 72.8
Msa0043650 AT2G21510.4 46.575 73 39 0 18 90 8 80 7.06e-14 72.8
Msa0043650 AT3G17830.1 49.315 73 36 1 16 88 63 134 8.08e-14 73.6
Msa0043650 AT5G16650.1 44.118 68 38 0 15 82 10 77 8.15e-14 68.6
Msa0043650 AT1G56300.1 44.286 70 35 1 13 78 10 79 8.32e-14 69.3
Msa0043650 AT2G21510.5 46.575 73 39 0 18 90 8 80 8.40e-14 72.4
Msa0043650 AT3G08970.1 54.412 68 30 1 16 83 27 93 9.16e-14 73.6
Msa0043650 AT3G08970.2 54.412 68 30 1 16 83 27 93 9.16e-14 73.6
Msa0043650 AT5G16650.2 44.776 67 37 0 15 81 10 76 1.11e-13 69.3
Msa0043650 AT1G56300.2 44.286 70 35 1 13 78 10 79 1.22e-13 67.8
Msa0043650 AT5G25530.2 46.479 71 37 1 16 85 4 74 1.45e-13 72.0
Msa0043650 AT4G39960.1 49.398 83 41 1 16 98 85 166 1.49e-13 72.4
Msa0043650 AT4G39960.2 49.398 83 41 1 16 98 85 166 1.49e-13 72.4
Msa0043650 AT1G80030.2 53.030 66 30 1 16 81 75 139 2.07e-13 72.4
Msa0043650 AT1G80030.3 53.030 66 30 1 16 81 75 139 2.07e-13 72.4
Msa0043650 AT1G80030.1 53.030 66 30 1 16 81 75 139 2.07e-13 72.4
Msa0043650 AT1G80030.4 53.030 66 30 1 16 81 75 139 2.30e-13 72.0
Msa0043650 AT1G71000.2 31.818 132 76 4 5 126 1 128 2.66e-13 68.2
Msa0043650 AT3G12170.1 40.625 96 51 2 18 113 13 102 3.33e-13 69.7
Msa0043650 AT5G06910.1 51.562 64 31 0 18 81 31 94 3.60e-13 70.1
Msa0043650 AT3G12170.2 40.625 96 51 2 18 113 49 138 5.05e-13 69.7
Msa0043650 AT2G41000.2 44.928 69 33 1 16 79 3 71 5.26e-13 68.2
Msa0043650 AT2G41000.1 44.928 69 33 1 16 79 3 71 1.07e-12 66.6
Msa0043650 AT4G39150.3 43.836 73 41 0 18 90 8 80 1.84e-12 68.6
Msa0043650 AT4G39150.1 43.836 73 41 0 18 90 8 80 1.84e-12 68.6
Msa0043650 AT4G39150.2 43.836 73 41 0 18 90 8 80 1.84e-12 68.6
Msa0043650 AT5G59610.2 50.000 66 32 1 14 79 71 135 1.98e-12 67.4
Msa0043650 AT1G59725.1 43.243 74 40 1 16 87 4 77 2.28e-12 68.2
Msa0043650 AT1G10350.1 42.254 71 40 1 16 85 4 74 2.50e-12 68.2
Msa0043650 AT1G21080.3 41.892 74 43 0 18 91 8 81 2.55e-12 68.6
Msa0043650 AT1G21080.1 41.892 74 43 0 18 91 8 81 2.60e-12 68.6
Msa0043650 AT5G59610.1 50.000 66 32 1 14 79 71 135 4.00e-12 66.6
Msa0043650 AT5G59610.4 50.000 66 32 1 14 79 71 135 4.00e-12 66.6
Msa0043650 AT5G59610.3 50.000 66 32 1 14 79 71 135 4.06e-12 66.6
Msa0043650 AT5G59610.5 50.000 66 32 1 14 79 71 135 4.06e-12 66.6
Msa0043650 AT2G33735.1 42.188 64 37 0 15 78 21 84 4.40e-12 63.2
Msa0043650 AT2G33735.2 42.188 64 37 0 15 78 21 84 4.40e-12 63.2
Msa0043650 AT1G28210.3 41.667 72 42 0 15 86 47 118 5.34e-12 67.4
Msa0043650 AT1G28210.1 41.667 72 42 0 15 86 47 118 5.55e-12 67.4
Msa0043650 AT1G28210.2 41.667 72 42 0 15 86 47 118 5.91e-12 67.4
Msa0043650 AT5G49060.2 49.254 67 33 1 16 82 99 164 1.67e-11 65.9
Msa0043650 AT5G49060.1 49.254 67 33 1 16 82 99 164 1.67e-11 65.9
Msa0043650 AT1G71000.1 39.286 84 43 2 5 84 1 80 1.78e-11 62.8
Msa0043650 AT1G76700.1 38.710 93 48 2 18 110 8 91 2.02e-11 65.9
Msa0043650 AT2G35720.1 41.758 91 46 3 1 87 2 89 2.59e-11 65.9
Msa0043650 AT5G25530.1 41.772 79 37 2 16 85 4 82 3.20e-11 64.7
Msa0043650 AT4G21180.2 44.776 67 35 2 16 81 19 84 5.09e-11 65.1
Msa0043650 AT4G21180.1 44.776 67 35 2 16 81 99 164 5.21e-11 65.1
Msa0043650 AT3G14200.1 35.052 97 60 1 5 98 1 97 7.37e-11 62.4

Find 129 sgRNAs with CRISPR-Local

Find 405 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACATATATTTGCCGTTTA+TGG 0.136662 1_1:+74914083 Msa0043650:CDS
GGAAGTTCTAGCAAAATTTC+TGG 0.196708 1_1:+74915189 Msa0043650:CDS
CAATGTTTGCAGCTTTATTC+AGG 0.268018 1_1:+74912180 Msa0043650:CDS
TTCCCCAGGGCTCTCACCTT+TGG 0.274890 1_1:-74915220 None:intergenic
AAAGCAGCCCGTGGATATAT+TGG 0.290376 1_1:+74915407 Msa0043650:three_prime_UTR
TCAGGCATTGGCACGCTATC+AGG 0.305387 1_1:+74914425 Msa0043650:intron
TTGAATAGTTCTGAAGCTTC+AGG 0.318305 1_1:-74911266 None:intergenic
TGGCCATCCCAATGCTGCTT+TGG 0.320422 1_1:-74909733 None:intergenic
TACCTCGGAATGTGTTTGTT+AGG 0.320607 1_1:-74909962 None:intergenic
GGATTGTTGGCATTCTTGTC+AGG 0.332047 1_1:-74911245 None:intergenic
AAAGAGAGGCTTCAGGTCTA+TGG 0.335119 1_1:+74910234 Msa0043650:exon
GAAATCGATTTATCTAATCT+TGG 0.354013 1_1:+74912146 Msa0043650:CDS
AAAGAAAGAAAGAAAGAAAC+AGG 0.355747 1_1:-74909918 None:intergenic
TTCAAGAACATTAGCCGAAA+TGG 0.367637 1_1:-74912311 None:intergenic
TTCTGAAGCTTCAGGATTGT+TGG 0.367958 1_1:-74911258 None:intergenic
CCCAATCAAGACTACCATTT+CGG 0.369384 1_1:+74912297 Msa0043650:CDS
TCTTCAACCTTGTGAAGTTT+CGG 0.371250 1_1:+74914046 Msa0043650:CDS
GCCGAAATGGTAGTCTTGAT+TGG 0.375333 1_1:-74912298 None:intergenic
AATTCAAGAACACAAGAAAC+TGG 0.387032 1_1:-74909865 None:intergenic
AGATGGAGGGTCAGATAGTA+AGG 0.390540 1_1:+74915242 Msa0043650:CDS
ATGGTTCAACCTCAATCTTA+AGG 0.396575 1_1:+74915284 Msa0043650:CDS
TGTGCCGCAAGGCTTGATAA+AGG 0.397229 1_1:-74915675 None:intergenic
TAAATTATTCAGACCATAAA+CGG 0.401187 1_1:-74914096 None:intergenic
CAACCTCAATCTTAAGGGCT+CGG 0.401801 1_1:+74915290 Msa0043650:CDS
TGGTTGGTTAATTTGTTCAT+TGG 0.402552 1_1:+74915484 Msa0043650:three_prime_UTR
GGGCTATGGTTTAGCATTGC+AGG 0.403402 1_1:+74912698 Msa0043650:CDS
TCGGAAAATTTGAGTCTCAT+TGG 0.405324 1_1:-74915566 None:intergenic
GGTTCCTCAAAGTTGTGAAC+TGG 0.407085 1_1:+74915464 Msa0043650:three_prime_UTR
TAAGGGTCACGTCGAATTGC+TGG 0.410479 1_1:-74910283 None:intergenic
AAGCAGCCCGTGGATATATT+GGG 0.418295 1_1:+74915408 Msa0043650:three_prime_UTR
ATTTCGAACAAGATGCAAAC+GGG 0.423149 1_1:+74912676 Msa0043650:CDS
ACCTCGGAATGTGTTTGTTA+GGG 0.430343 1_1:-74909961 None:intergenic
AAATCGATTTATCTAATCTT+GGG 0.433620 1_1:+74912147 Msa0043650:CDS
AACTGCACAAAGCAAATTCA+AGG 0.433774 1_1:+74912571 Msa0043650:CDS
AATGAGCAGCAAGCTGAGTC+CGG 0.438090 1_1:+74912527 Msa0043650:CDS
TTCCTGATCGGATGATTCCT+TGG 0.440358 1_1:-74910323 None:intergenic
AAGAACACAAGAAACTGGTT+TGG 0.445552 1_1:-74909860 None:intergenic
AACCTCAATCTTAAGGGCTC+GGG 0.448187 1_1:+74915291 Msa0043650:CDS
GTTCTTGAAGAAGCTTTGAA+TGG 0.448738 1_1:+74912325 Msa0043650:CDS
GGTGAGAGCCCTGGGGAAGA+TGG 0.452090 1_1:+74915225 Msa0043650:CDS
CCAACCAGTTCACAACTTTG+AGG 0.453631 1_1:-74915468 None:intergenic
CCGAAATGGTAGTCTTGATT+GGG 0.459457 1_1:-74912297 None:intergenic
TGGTTCAACCTCAATCTTAA+GGG 0.459920 1_1:+74915285 Msa0043650:CDS
TAAAGAGAAAGAGAGGCTTC+AGG 0.462041 1_1:+74910227 Msa0043650:five_prime_UTR
ACTGGCAAAGTGACATCTGC+TGG 0.462289 1_1:+74913840 Msa0043650:CDS
TCAGATAGTAAGGATAAATC+AGG 0.462722 1_1:+74915252 Msa0043650:CDS
GGTTTGGTTTCGCTAGAGTC+AGG 0.463214 1_1:-74909844 None:intergenic
TAATTAAACCAAAGCAGCAT+TGG 0.469609 1_1:+74909725 Msa0043650:five_prime_UTR
ATTCCAAAGGTGAGAGCCCT+GGG 0.470174 1_1:+74915217 Msa0043650:CDS
AATTAAACCAAAGCAGCATT+GGG 0.477522 1_1:+74909726 Msa0043650:five_prime_UTR
TTTATTTGGTAACAGCAAGC+TGG 0.478612 1_1:+74912270 Msa0043650:intron
TATACATTCAAAATGCTCAA+TGG 0.488983 1_1:-74909753 None:intergenic
TTCCAAGGAATCATCCGATC+AGG 0.491880 1_1:+74910321 Msa0043650:CDS
TCTGACCCTCCATCTTCCCC+AGG 0.494682 1_1:-74915234 None:intergenic
TGACAATGGTGAAGGTAGAA+TGG 0.495930 1_1:-74915125 None:intergenic
GTACGACAGTGCAGGATTTG+AGG 0.501253 1_1:+74911340 Msa0043650:CDS
AACCCGAGCCCTTAAGATTG+AGG 0.504980 1_1:-74915293 None:intergenic
ACTGCCACTTCCACTAGTAC+TGG 0.506538 1_1:-74915154 None:intergenic
ATAAAGATAAAGAGAAAGAG+AGG 0.508670 1_1:+74910220 Msa0043650:five_prime_UTR
GATTCCAAAGGTGAGAGCCC+TGG 0.509111 1_1:+74915216 Msa0043650:CDS
TTATTTGGTAACAGCAAGCT+GGG 0.510014 1_1:+74912271 Msa0043650:intron
GATTGTTGGCATTCTTGTCA+GGG 0.511190 1_1:-74911244 None:intergenic
AAGTTTGATCCCATGACTGA+TGG 0.511963 1_1:-74915384 None:intergenic
TGAGGATGCTACAAGGGAAT+CGG 0.513549 1_1:-74915585 None:intergenic
GAAACGCCTAAAACTTCGTA+AGG 0.514888 1_1:-74910301 None:intergenic
ACGGCAAATATATGTGTGCC+AGG 0.520233 1_1:-74914077 None:intergenic
GAAGTTTCGGAACTAAAGCC+TGG 0.523940 1_1:+74914059 Msa0043650:CDS
AAGGACGCCATCTCGCAACT+TGG 0.527310 1_1:+74909807 Msa0043650:five_prime_UTR
CAGGTCTATGGATCAAAAGA+TGG 0.537155 1_1:+74910246 Msa0043650:exon
AGAAGGCAGTACGACAGTGC+AGG 0.538322 1_1:+74911332 Msa0043650:CDS
ATGAGCAGCAAGCTGAGTCC+GGG 0.538924 1_1:+74912528 Msa0043650:CDS
AGGCTTGATAAAGGAAAAGA+AGG 0.539248 1_1:-74915666 None:intergenic
ACAGTCAGACCCCTTCCAAT+GGG 0.539807 1_1:+74912355 Msa0043650:CDS
TATTTCGAACAAGATGCAAA+CGG 0.540322 1_1:+74912675 Msa0043650:CDS
GGCACTTGATGCTGATAGCA+TGG 0.541278 1_1:+74912118 Msa0043650:intron
TGACAGATGTTCCCATTGGA+AGG 0.542282 1_1:-74912366 None:intergenic
CCAACCAGTACTAGTGGAAG+TGG 0.543516 1_1:+74915150 Msa0043650:CDS
CCACTTCCACTAGTACTGGT+TGG 0.543648 1_1:-74915150 None:intergenic
CCACTGACAGATGTTCCCAT+TGG 0.546382 1_1:-74912370 None:intergenic
TTGGTTTGTGATGCAGTCAA+AGG 0.547925 1_1:+74915503 Msa0043650:three_prime_UTR
TACAGTCAGACCCCTTCCAA+TGG 0.549746 1_1:+74912354 Msa0043650:CDS
CACTACACCCAATATATCCA+CGG 0.551627 1_1:-74915415 None:intergenic
GAGAGCCCTGGGGAAGATGG+AGG 0.552103 1_1:+74915228 Msa0043650:CDS
TAAGAAAGAGGAATGAGCTA+CGG 0.559189 1_1:+74914302 Msa0043650:CDS
ATTCGAATCAGAATATAGAA+AGG 0.559792 1_1:+74914327 Msa0043650:CDS
GCTTGAGTGACCATCAGTCA+TGG 0.560979 1_1:+74915374 Msa0043650:three_prime_UTR
AGTGGCAGTAATTTAAGCAA+TGG 0.561362 1_1:+74915168 Msa0043650:CDS
AGAGCCCTGGGGAAGATGGA+GGG 0.564660 1_1:+74915229 Msa0043650:CDS
AGCTTCAGAACTATTCAAAG+AGG 0.565165 1_1:+74911271 Msa0043650:CDS
TAGATGAGCTTCTGAAGCAA+AGG 0.568314 1_1:+74915094 Msa0043650:CDS
GACAGATGTTCCCATTGGAA+GGG 0.577219 1_1:-74912365 None:intergenic
CCTCAAAGTTGTGAACTGGT+TGG 0.577735 1_1:+74915468 Msa0043650:three_prime_UTR
AGATGAGCTTCTGAAGCAAA+GGG 0.578480 1_1:+74915095 Msa0043650:CDS
ACAGATGTTCCCATTGGAAG+GGG 0.585092 1_1:-74912364 None:intergenic
GTCAAGCCAACCAGTACTAG+TGG 0.588616 1_1:+74915144 Msa0043650:CDS
CAGGAAGATAGTGAGAAGAC+TGG 0.589084 1_1:+74913822 Msa0043650:intron
GCTTTCTTTAAAAGGTTGGA+AGG 0.589624 1_1:+74914023 Msa0043650:CDS
AGTAACTCTTACTACAATCC+CGG 0.591228 1_1:-74912546 None:intergenic
CTTGAGTGACCATCAGTCAT+GGG 0.593639 1_1:+74915375 Msa0043650:three_prime_UTR
TATATGTTGAGGATGCTACA+AGG 0.593654 1_1:-74915592 None:intergenic
GGGAACATCTGTCAGTGGAA+AGG 0.595107 1_1:+74912375 Msa0043650:CDS
AAACCAAAGCAGCATTGGGA+TGG 0.595402 1_1:+74909730 Msa0043650:five_prime_UTR
CTGACCCTCCATCTTCCCCA+GGG 0.596536 1_1:-74915233 None:intergenic
TCCCTAACAAACACATTCCG+AGG 0.601621 1_1:+74909960 Msa0043650:five_prime_UTR
TCTATGGATCAAAAGATGGA+AGG 0.606940 1_1:+74910250 Msa0043650:exon
TGTAAGACCAAGTTGCGAGA+TGG 0.610392 1_1:-74909814 None:intergenic
TATCTGACCCAGAAAAGAGA+AGG 0.614795 1_1:+74911315 Msa0043650:CDS
ATCTTTCTATTCGAACAACA+CGG 0.618920 1_1:-74910199 None:intergenic
ACTACACCCAATATATCCAC+GGG 0.622246 1_1:-74915414 None:intergenic
TGTTGTGGTGCAGTTAGCGA+TGG 0.622724 1_1:+74913983 Msa0043650:intron
AGCGATGGCCAAGGATCCTG+AGG 0.626922 1_1:+74913998 Msa0043650:CDS
GCGATGGCCAAGGATCCTGA+GGG 0.627814 1_1:+74913999 Msa0043650:CDS
GGTGCAGTTAGCGATGGCCA+AGG 0.631797 1_1:+74913989 Msa0043650:intron
ATTTCTGGTGAAGATTCCAA+AGG 0.636229 1_1:+74915204 Msa0043650:CDS
AATGGATTCAACTGTGAATG+CGG 0.640290 1_1:+74913893 Msa0043650:CDS
ATATGTTGAGGATGCTACAA+GGG 0.642836 1_1:-74915591 None:intergenic
TGATGCTGATAGCATGGACA+TGG 0.647234 1_1:+74912124 Msa0043650:CDS
ATCAAACTTAAAGCAGCCCG+TGG 0.648796 1_1:+74915398 Msa0043650:three_prime_UTR
TTTAGTTCCGAAACTTCACA+AGG 0.659450 1_1:-74914053 None:intergenic
TTTCGAACAAGATGCAAACG+GGG 0.666223 1_1:+74912677 Msa0043650:CDS
GATGGCCAAGGATCCTGAGG+GGG 0.667249 1_1:+74914001 Msa0043650:CDS
GAGCTTCTGAAGCAAAGGGA+CGG 0.671749 1_1:+74915099 Msa0043650:CDS
CCAATGGGAACATCTGTCAG+TGG 0.675083 1_1:+74912370 Msa0043650:CDS
AGTACTGGTTGGCTTGACAA+TGG 0.678755 1_1:-74915139 None:intergenic
AAACGCCTAAAACTTCGTAA+GGG 0.680076 1_1:-74910300 None:intergenic
GGTTGGCTTGACAATGGTGA+AGG 0.708781 1_1:-74915133 None:intergenic
TTCGAACAAGATGCAAACGG+GGG 0.711604 1_1:+74912678 Msa0043650:CDS
CGATGGCCAAGGATCCTGAG+GGG 0.716333 1_1:+74914000 Msa0043650:CDS
TTCCAAAGGTGAGAGCCCTG+GGG 0.764572 1_1:+74915218 Msa0043650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAAAAAAAAAAAAA+AGG + chr1_1:74909788-74909807 Msa0043650:five_prime_UTR 0.0%
!! TTATAAAAAACTGAATATTT+AGG - chr1_1:74910609-74910628 None:intergenic 10.0%
!!! TATTATATTTTAGTCAAAAT+TGG + chr1_1:74911716-74911735 Msa0043650:intron 10.0%
!! AAAGTTACATATTAATTAAA+AGG - chr1_1:74912074-74912093 None:intergenic 10.0%
!!! AATTTAATACCAATATATTT+TGG - chr1_1:74913059-74913078 None:intergenic 10.0%
!! TAATAATCGAATTCAAAAAA+GGG - chr1_1:74910039-74910058 None:intergenic 15.0%
!! AAAAAGCAAAAAAAAAAATG+AGG - chr1_1:74910411-74910430 None:intergenic 15.0%
!!! ATAGTTTGCTTTTTATATAT+CGG + chr1_1:74911939-74911958 Msa0043650:intron 15.0%
!!! TGGTTTGTTTTTTTATATAT+CGG + chr1_1:74911987-74912006 Msa0043650:intron 15.0%
!! AATGAGATAATATATTGTTA+AGG + chr1_1:74912869-74912888 Msa0043650:intron 15.0%
!! ATGAGATAATATATTGTTAA+GGG + chr1_1:74912870-74912889 Msa0043650:intron 15.0%
!!! TTAATAGTCATTTCAATTTT+TGG - chr1_1:74913258-74913277 None:intergenic 15.0%
!!! AATTTGAGATATAAGTTAAT+GGG - chr1_1:74913348-74913367 None:intergenic 15.0%
!! TATCAAAAATATATATGTTG+AGG - chr1_1:74915606-74915625 None:intergenic 15.0%
!! GTAATAATCGAATTCAAAAA+AGG - chr1_1:74910040-74910059 None:intergenic 20.0%
!! CATAGTAATTTGAATTACAA+AGG - chr1_1:74910657-74910676 None:intergenic 20.0%
!! TAATTCAAATTACTATGTCT+GGG + chr1_1:74910660-74910679 Msa0043650:intron 20.0%
!!! AAAAATTTAGAATCTTGTCA+GGG - chr1_1:74910767-74910786 None:intergenic 20.0%
!! TTAAGGTTATGACTTAAAAT+TGG + chr1_1:74910855-74910874 Msa0043650:intron 20.0%
!! TAAGGTTATGACTTAAAATT+GGG + chr1_1:74910856-74910875 Msa0043650:intron 20.0%
!! AAATACTATAGATTAGTGTT+TGG + chr1_1:74910993-74911012 Msa0043650:intron 20.0%
!! AATACTATAGATTAGTGTTT+GGG + chr1_1:74910994-74911013 Msa0043650:intron 20.0%
!! ATAAATTGTTTAAACTGTGT+AGG + chr1_1:74911101-74911120 Msa0043650:intron 20.0%
!!! TATAATTTTTTCCCTTTTCT+GGG + chr1_1:74911531-74911550 Msa0043650:intron 20.0%
!! CTAAAATATAATATTTGACG+TGG - chr1_1:74911709-74911728 None:intergenic 20.0%
!! AAAAACAGTACATATGTATA+AGG - chr1_1:74911789-74911808 None:intergenic 20.0%
!! ATAGTAATCTATGAAAAGAT+AGG - chr1_1:74911822-74911841 None:intergenic 20.0%
!!! AAATCGATTTATCTAATCTT+GGG + chr1_1:74912147-74912166 Msa0043650:CDS 20.0%
!! TCAAAAGTAACAAAGTTTAT+TGG + chr1_1:74912920-74912939 Msa0043650:intron 20.0%
!!! GTTGATTTACCAAAATATAT+TGG + chr1_1:74913047-74913066 Msa0043650:intron 20.0%
!! GACTATTAACTTTATATTAC+TGG + chr1_1:74913269-74913288 Msa0043650:intron 20.0%
!!! GAATTTGAGATATAAGTTAA+TGG - chr1_1:74913349-74913368 None:intergenic 20.0%
!!! ATCTATGAATCAATTTTGAA+TGG - chr1_1:74913717-74913736 None:intergenic 20.0%
!! TAAATTATTCAGACCATAAA+CGG - chr1_1:74914099-74914118 None:intergenic 20.0%
!! CAATTATCAGAATTTAATAG+AGG + chr1_1:74914718-74914737 Msa0043650:intron 20.0%
!!! TAATTTGTCTGTTATTTTTC+TGG + chr1_1:74915062-74915081 Msa0043650:intron 20.0%
! TATACATTCAAAATGCTCAA+TGG - chr1_1:74909756-74909775 None:intergenic 25.0%
! AAAGAAAGAAAGAAAGAAAC+AGG - chr1_1:74909921-74909940 None:intergenic 25.0%
! AATTGAACAAACCACTTATT+AGG + chr1_1:74910075-74910094 Msa0043650:intron 25.0%
! ATAAAGATAAAGAGAAAGAG+AGG + chr1_1:74910220-74910239 Msa0043650:five_prime_UTR 25.0%
! TTAGGAAACATAAAGACTAA+AGG - chr1_1:74910591-74910610 None:intergenic 25.0%
! GTAATTCAAATTACTATGTC+TGG + chr1_1:74910659-74910678 Msa0043650:intron 25.0%
!! AAAATTTAGAATCTTGTCAG+GGG - chr1_1:74910766-74910785 None:intergenic 25.0%
!! CAAAAATTTAGAATCTTGTC+AGG - chr1_1:74910768-74910787 None:intergenic 25.0%
!!! CTTAAAATGAGTGTTTTTTC+AGG - chr1_1:74910840-74910859 None:intergenic 25.0%
!! CTGAAAAAACACTCATTTTA+AGG + chr1_1:74910838-74910857 Msa0043650:intron 25.0%
! TCATAACCATTCAAATTGAA+GGG - chr1_1:74910938-74910957 None:intergenic 25.0%
!!! AAAACAAAAGTTTTGGCTAA+TGG + chr1_1:74911445-74911464 Msa0043650:intron 25.0%
!!! CTATAATTTTTTCCCTTTTC+TGG + chr1_1:74911530-74911549 Msa0043650:intron 25.0%
!!! ATAATTTTTTCCCTTTTCTG+GGG + chr1_1:74911532-74911551 Msa0043650:intron 25.0%
! AAAACATGAGTCATTTGTTT+CGG + chr1_1:74911757-74911776 Msa0043650:intron 25.0%
!! GAAATCGATTTATCTAATCT+TGG + chr1_1:74912146-74912165 Msa0043650:CDS 25.0%
!! GCATTGTTTCTTACTTTATT+TGG + chr1_1:74912256-74912275 Msa0043650:intron 25.0%
! TTGTTCTTATTCCACTTATA+TGG + chr1_1:74912452-74912471 Msa0043650:intron 25.0%
! ACTTTGACAACAACAAATAA+GGG - chr1_1:74912778-74912797 None:intergenic 25.0%
! AACTTTGACAACAACAAATA+AGG - chr1_1:74912779-74912798 None:intergenic 25.0%
! TCTCTGCAATAAATACTTAA+GGG - chr1_1:74912836-74912855 None:intergenic 25.0%
! ATCTCTGCAATAAATACTTA+AGG - chr1_1:74912837-74912856 None:intergenic 25.0%
!!! ACAAAGTTTATTGGTTTTCT+TGG + chr1_1:74912929-74912948 Msa0043650:intron 25.0%
! CATAAAACAGACAACTAAAA+AGG + chr1_1:74912966-74912985 Msa0043650:intron 25.0%
! GCATAATATTAGTAAACACT+AGG + chr1_1:74913418-74913437 Msa0043650:intron 25.0%
! TTTATCCAGATGATAAAAAC+AGG - chr1_1:74913553-74913572 None:intergenic 25.0%
!!! AAGTTTGAAGGAATTGATTT+TGG - chr1_1:74913578-74913597 None:intergenic 25.0%
! GTATGGATATTATGTCTATT+TGG + chr1_1:74913915-74913934 Msa0043650:intron 25.0%
!!! TGTTTTTTTTTTTGCTTGCT+TGG + chr1_1:74914130-74914149 Msa0043650:intron 25.0%
!!! GTTTTTTTTTTTGCTTGCTT+GGG + chr1_1:74914131-74914150 Msa0043650:intron 25.0%
!!! AATTCGAGTTGATATTGTTT+AGG + chr1_1:74914178-74914197 Msa0043650:intron 25.0%
! ATTCGAATCAGAATATAGAA+AGG + chr1_1:74914327-74914346 Msa0043650:CDS 25.0%
! TCAGAATTTAATAGAGGAAA+AGG + chr1_1:74914724-74914743 Msa0043650:intron 25.0%
! ATAAATCAGGCAAAAAGAAA+TGG + chr1_1:74915265-74915284 Msa0043650:CDS 25.0%
! TCTCATTGGACAAAAAATAT+AGG - chr1_1:74915555-74915574 None:intergenic 25.0%
TAATTAAACCAAAGCAGCAT+TGG + chr1_1:74909725-74909744 Msa0043650:five_prime_UTR 30.0%
AATTAAACCAAAGCAGCATT+GGG + chr1_1:74909726-74909745 Msa0043650:five_prime_UTR 30.0%
AATTCAAGAACACAAGAAAC+TGG - chr1_1:74909868-74909887 None:intergenic 30.0%
GTATTGTTTGACCTAATAAG+TGG - chr1_1:74910089-74910108 None:intergenic 30.0%
!!! GTAGAATTGAGCTTTTTTGA+GGG - chr1_1:74910154-74910173 None:intergenic 30.0%
AGTAGCTGTTGAATGAAAAA+AGG - chr1_1:74910176-74910195 None:intergenic 30.0%
ATCTTTCTATTCGAACAACA+CGG - chr1_1:74910202-74910221 None:intergenic 30.0%
ATGAGGTAGAAAGTGAAAAA+GGG - chr1_1:74910394-74910413 None:intergenic 30.0%
AATGAGGTAGAAAGTGAAAA+AGG - chr1_1:74910395-74910414 None:intergenic 30.0%
! TTGATGACCTTCAAAATCTA+GGG - chr1_1:74910525-74910544 None:intergenic 30.0%
GAAACATAAAGACTAAAGGT+TGG - chr1_1:74910587-74910606 None:intergenic 30.0%
!!! CGATTATGCTGTTGTTTTTT+TGG - chr1_1:74910728-74910747 None:intergenic 30.0%
! ACAGGTTAATTAGGATTTTG+GGG - chr1_1:74910811-74910830 None:intergenic 30.0%
! GACAGGTTAATTAGGATTTT+GGG - chr1_1:74910812-74910831 None:intergenic 30.0%
!!! ATGAGTGTTTTTTCAGGTTT+TGG - chr1_1:74910834-74910853 None:intergenic 30.0%
GTCATAACCATTCAAATTGA+AGG - chr1_1:74910939-74910958 None:intergenic 30.0%
! AATGGTTATGACTTTTGCTT+GGG + chr1_1:74910947-74910966 Msa0043650:intron 30.0%
! TATCTCACTATAGCTTTTCT+AGG + chr1_1:74911156-74911175 Msa0043650:intron 30.0%
! ATCTCACTATAGCTTTTCTA+GGG + chr1_1:74911157-74911176 Msa0043650:intron 30.0%
CTGATCTCTATATAATTGAC+AGG + chr1_1:74911216-74911235 Msa0043650:intron 30.0%
! CAGCATGAAAACAAAAGTTT+TGG + chr1_1:74911438-74911457 Msa0043650:intron 30.0%
ATTTACCAAGTTATCTAGCT+TGG + chr1_1:74911477-74911496 Msa0043650:intron 30.0%
ATAGAAGTAAGATGTCAAGA+TGG - chr1_1:74911564-74911583 None:intergenic 30.0%
TTGACATCTTACTTCTATGA+TGG + chr1_1:74911566-74911585 Msa0043650:intron 30.0%
TAATCTATGAAAAGATAGGC+AGG - chr1_1:74911818-74911837 None:intergenic 30.0%
AAATGCATGAATTGAACGAA+AGG - chr1_1:74911845-74911864 None:intergenic 30.0%
ATTAAAAGGAGAGTTGTATC+AGG - chr1_1:74912060-74912079 None:intergenic 30.0%
! CTATTTTGCCTATGTATATC+AGG + chr1_1:74912097-74912116 Msa0043650:intron 30.0%
AAGCAATGCAATAATCTTCT+TGG + chr1_1:74912422-74912441 Msa0043650:intron 30.0%
!!! AAGCAATGTGCTCATTTTTT+TGG + chr1_1:74912494-74912513 Msa0043650:CDS 30.0%
!!! TGCCTTTTTTACAATGATTC+CGG + chr1_1:74912603-74912622 Msa0043650:intron 30.0%
TATTTCGAACAAGATGCAAA+CGG + chr1_1:74912675-74912694 Msa0043650:CDS 30.0%
!! TACAAAAGCACCACTTAAAA+AGG - chr1_1:74912744-74912763 None:intergenic 30.0%
AACAGACAACTAAAAAGGAA+TGG + chr1_1:74912971-74912990 Msa0043650:intron 30.0%
GATATCACAGAAACTCTAAT+AGG + chr1_1:74913155-74913174 Msa0043650:intron 30.0%
TGAATGATGATTAATCTCAC+AGG + chr1_1:74913207-74913226 Msa0043650:intron 30.0%
!! GTCATTTCAATTTTTGGAAG+AGG - chr1_1:74913252-74913271 None:intergenic 30.0%
TGATAAAAACAGGAAACACA+AGG - chr1_1:74913543-74913562 None:intergenic 30.0%
!!! TGTTTCCTGTTTTTATCATC+TGG + chr1_1:74913545-74913564 Msa0043650:intron 30.0%
CACAAGATTTGAAAGTTTGA+AGG - chr1_1:74913590-74913609 None:intergenic 30.0%
! GTGAAACACATTTTATCATC+TGG + chr1_1:74913607-74913626 Msa0043650:intron 30.0%
AGTAGTTGTGCAATTACAAT+TGG + chr1_1:74913766-74913785 Msa0043650:intron 30.0%
!!! ACATTTTCAAGTGTACAGAA+TGG + chr1_1:74913875-74913894 Msa0043650:CDS 30.0%
! TTGGTTTCTTTTCTTTGTTG+CGG + chr1_1:74913934-74913953 Msa0043650:intron 30.0%
! ACACATATATTTGCCGTTTA+TGG + chr1_1:74914083-74914102 Msa0043650:CDS 30.0%
! CTCAATATCCTGAAGTTTTT+GGG - chr1_1:74914272-74914291 None:intergenic 30.0%
!! AGGCTCAAATTTTAAGAAAG+AGG + chr1_1:74914290-74914309 Msa0043650:CDS 30.0%
!!! ATAGCTTGAAGTTTGTTTTG+TGG + chr1_1:74914372-74914391 Msa0043650:intron 30.0%
TTCAGAAAAGGATCACATTA+AGG - chr1_1:74914399-74914418 None:intergenic 30.0%
TTTATAACTGTAGCATGTGT+TGG - chr1_1:74914496-74914515 None:intergenic 30.0%
GCATATAAAAGACCAAAACA+AGG - chr1_1:74914784-74914803 None:intergenic 30.0%
!! CGTTTTGATATAATTTACCC+TGG + chr1_1:74914979-74914998 Msa0043650:intron 30.0%
ATTAAATGTGTTCTGCTCTT+CGG + chr1_1:74915009-74915028 Msa0043650:intron 30.0%
TCAGATAGTAAGGATAAATC+AGG + chr1_1:74915252-74915271 Msa0043650:CDS 30.0%
! CTACAATGTTTTCATTTGCT+TGG + chr1_1:74915443-74915462 Msa0043650:three_prime_UTR 30.0%
!! TGGTTGGTTAATTTGTTCAT+TGG + chr1_1:74915484-74915503 Msa0043650:three_prime_UTR 30.0%
AAGAACACAAGAAACTGGTT+TGG - chr1_1:74909863-74909882 None:intergenic 35.0%
AGGGAAAAGAGAGAGATTAT+GGG - chr1_1:74910020-74910039 None:intergenic 35.0%
AAGGGAAAAGAGAGAGATTA+TGG - chr1_1:74910021-74910040 None:intergenic 35.0%
CTACTGCTATTACTATGACA+TGG - chr1_1:74910121-74910140 None:intergenic 35.0%
!!! TTGAGCTTTTTTGAGGGTTT+GGG - chr1_1:74910148-74910167 None:intergenic 35.0%
!!! ATTGAGCTTTTTTGAGGGTT+TGG - chr1_1:74910149-74910168 None:intergenic 35.0%
!!! GGTAGAATTGAGCTTTTTTG+AGG - chr1_1:74910155-74910174 None:intergenic 35.0%
TCTATGGATCAAAAGATGGA+AGG + chr1_1:74910250-74910269 Msa0043650:exon 35.0%
AAACGCCTAAAACTTCGTAA+GGG - chr1_1:74910303-74910322 None:intergenic 35.0%
!!! AGCGGTTTTAATTTCCTGAT+CGG - chr1_1:74910338-74910357 None:intergenic 35.0%
! TGTAGAACCCTAGATTTTGA+AGG + chr1_1:74910515-74910534 Msa0043650:intron 35.0%
!! GTTGATGACCTTCAAAATCT+AGG - chr1_1:74910526-74910545 None:intergenic 35.0%
TTGCACTCAACAGAAACTTT+AGG + chr1_1:74910700-74910719 Msa0043650:intron 35.0%
CAGCATAATCGAATTACCTA+AGG + chr1_1:74910737-74910756 Msa0043650:intron 35.0%
! GGACAGGTTAATTAGGATTT+TGG - chr1_1:74910813-74910832 None:intergenic 35.0%
!!! AGGTTTTGGACAGGTTAATT+AGG - chr1_1:74910820-74910839 None:intergenic 35.0%
!!! TGTTTTTTCAGGTTTTGGAC+AGG - chr1_1:74910829-74910848 None:intergenic 35.0%
GCTTTCTTAAACTCATTCCA+AGG - chr1_1:74910916-74910935 None:intergenic 35.0%
AGAAAGCCCTTCAATTTGAA+TGG + chr1_1:74910929-74910948 Msa0043650:intron 35.0%
! GAATGGTTATGACTTTTGCT+TGG + chr1_1:74910946-74910965 Msa0043650:intron 35.0%
! ATGGTTATGACTTTTGCTTG+GGG + chr1_1:74910948-74910967 Msa0043650:intron 35.0%
ACTAGCTATGACTAATCAGA+GGG - chr1_1:74911060-74911079 None:intergenic 35.0%
AACTAGCTATGACTAATCAG+AGG - chr1_1:74911061-74911080 None:intergenic 35.0%
GAAAAGCTATAGTGAGATAG+CGG - chr1_1:74911155-74911174 None:intergenic 35.0%
GAGATCAGTGTTATCAATTG+TGG - chr1_1:74911204-74911223 None:intergenic 35.0%
!! TTGAATAGTTCTGAAGCTTC+AGG - chr1_1:74911269-74911288 None:intergenic 35.0%
AGCTTCAGAACTATTCAAAG+AGG + chr1_1:74911271-74911290 Msa0043650:CDS 35.0%
ATCGAAGAAAAGAAGAGCTT+TGG - chr1_1:74911396-74911415 None:intergenic 35.0%
! TGTTTTCATGCTGCCAAAAA+GGG - chr1_1:74911431-74911450 None:intergenic 35.0%
! TTGTTTTCATGCTGCCAAAA+AGG - chr1_1:74911432-74911451 None:intergenic 35.0%
!!! AAAGTTTTGGCTAATGGCAT+AGG + chr1_1:74911451-74911470 Msa0043650:intron 35.0%
! GTTTTCCAAGCTAGATAACT+TGG - chr1_1:74911485-74911504 None:intergenic 35.0%
AAAGCATAAGAAAAGCTTGC+AGG - chr1_1:74911604-74911623 None:intergenic 35.0%
ACATATACATCTCAGAAGAG+AGG + chr1_1:74911626-74911645 Msa0043650:intron 35.0%
GCTGCTTGCATTAATGTAAA+TGG + chr1_1:74911920-74911939 Msa0043650:intron 35.0%
ATCAAGTGCCTGATATACAT+AGG - chr1_1:74912108-74912127 None:intergenic 35.0%
!! CAATGTTTGCAGCTTTATTC+AGG + chr1_1:74912180-74912199 Msa0043650:CDS 35.0%
! TTTATTTGGTAACAGCAAGC+TGG + chr1_1:74912270-74912289 Msa0043650:intron 35.0%
! TTATTTGGTAACAGCAAGCT+GGG + chr1_1:74912271-74912290 Msa0043650:intron 35.0%
TTCAAGAACATTAGCCGAAA+TGG - chr1_1:74912314-74912333 None:intergenic 35.0%
!! GTTCTTGAAGAAGCTTTGAA+TGG + chr1_1:74912325-74912344 Msa0043650:CDS 35.0%
GCAACAAATTGCCATATAAG+TGG - chr1_1:74912466-74912485 None:intergenic 35.0%
!! CTTATATGGCAATTTGTTGC+AGG + chr1_1:74912466-74912485 Msa0043650:intron 35.0%
AGTAACTCTTACTACAATCC+CGG - chr1_1:74912549-74912568 None:intergenic 35.0%
AACTGCACAAAGCAAATTCA+AGG + chr1_1:74912571-74912590 Msa0043650:CDS 35.0%
AGCCGGAATCATTGTAAAAA+AGG - chr1_1:74912608-74912627 None:intergenic 35.0%
TACAATGATTCCGGCTAATA+TGG + chr1_1:74912612-74912631 Msa0043650:intron 35.0%
CAGATTGTAATATTGAACGC+TGG + chr1_1:74912638-74912657 Msa0043650:intron 35.0%
ATTTCGAACAAGATGCAAAC+GGG + chr1_1:74912676-74912695 Msa0043650:CDS 35.0%
ACCACTTAAAAAGGAACGTA+GGG - chr1_1:74912735-74912754 None:intergenic 35.0%
AGACAACTAAAAAGGAATGG+AGG + chr1_1:74912974-74912993 Msa0043650:intron 35.0%
GACAACTAAAAAGGAATGGA+GGG + chr1_1:74912975-74912994 Msa0043650:intron 35.0%
TGGTAAATCAACAAGTCGAA+GGG - chr1_1:74913039-74913058 None:intergenic 35.0%
TTGGTAAATCAACAAGTCGA+AGG - chr1_1:74913040-74913059 None:intergenic 35.0%
TTTGGAAGAGGTAAAACCAT+GGG - chr1_1:74913240-74913259 None:intergenic 35.0%
!! TTTTGGAAGAGGTAAAACCA+TGG - chr1_1:74913241-74913260 None:intergenic 35.0%
TAAAAGGGAAATGGAGATGA+GGG - chr1_1:74913385-74913404 None:intergenic 35.0%
AGACACAAGTAAAAGGGAAA+TGG - chr1_1:74913394-74913413 None:intergenic 35.0%
GCTACAAGACACAAGTAAAA+GGG - chr1_1:74913400-74913419 None:intergenic 35.0%
TGCTACAAGACACAAGTAAA+AGG - chr1_1:74913401-74913420 None:intergenic 35.0%
TAAATAACAATCCTTGCACG+TGG + chr1_1:74913444-74913463 Msa0043650:intron 35.0%
TAAAAATACAACCACGTGCA+AGG - chr1_1:74913458-74913477 None:intergenic 35.0%
CATAACAGCACGAATTTCTA+TGG + chr1_1:74913496-74913515 Msa0043650:intron 35.0%
GTCTATGCAATTGTCTATAC+AGG + chr1_1:74913803-74913822 Msa0043650:intron 35.0%
! AATGGATTCAACTGTGAATG+CGG + chr1_1:74913893-74913912 Msa0043650:CDS 35.0%
! TGGTTTCTTTTCTTTGTTGC+GGG + chr1_1:74913935-74913954 Msa0043650:intron 35.0%
! GCTTTCTTTAAAAGGTTGGA+AGG + chr1_1:74914023-74914042 Msa0043650:CDS 35.0%
TCTTCAACCTTGTGAAGTTT+CGG + chr1_1:74914046-74914065 Msa0043650:CDS 35.0%
! TTTAGTTCCGAAACTTCACA+AGG - chr1_1:74914056-74914075 None:intergenic 35.0%
!! AATATCCTGAAGTTTTTGGG+TGG - chr1_1:74914269-74914288 None:intergenic 35.0%
! CCTCAATATCCTGAAGTTTT+TGG - chr1_1:74914273-74914292 None:intergenic 35.0%
CCAAAAACTTCAGGATATTG+AGG + chr1_1:74914270-74914289 Msa0043650:CDS 35.0%
TAAGAAAGAGGAATGAGCTA+CGG + chr1_1:74914302-74914321 Msa0043650:CDS 35.0%
! TCCTTTTCTGAATACGTTTC+AGG + chr1_1:74914407-74914426 Msa0043650:intron 35.0%
! AAACAAGGATAAGCATCGTA+TGG - chr1_1:74914769-74914788 None:intergenic 35.0%
!! TACGATGCTTATCCTTGTTT+TGG + chr1_1:74914769-74914788 Msa0043650:intron 35.0%
AAACAGGACATATCGAAAAC+AGG - chr1_1:74914871-74914890 None:intergenic 35.0%
CACATTTAATAGTAGTGCCA+GGG - chr1_1:74914999-74915018 None:intergenic 35.0%
ACACATTTAATAGTAGTGCC+AGG - chr1_1:74915000-74915019 None:intergenic 35.0%
!!! TGTTATTTTTCTGGTTACCC+AGG + chr1_1:74915071-74915090 Msa0043650:intron 35.0%
AGTGGCAGTAATTTAAGCAA+TGG + chr1_1:74915168-74915187 Msa0043650:CDS 35.0%
! GGAAGTTCTAGCAAAATTTC+TGG + chr1_1:74915189-74915208 Msa0043650:CDS 35.0%
!! ATTTCTGGTGAAGATTCCAA+AGG + chr1_1:74915204-74915223 Msa0043650:CDS 35.0%
ATGGTTCAACCTCAATCTTA+AGG + chr1_1:74915284-74915303 Msa0043650:CDS 35.0%
TGGTTCAACCTCAATCTTAA+GGG + chr1_1:74915285-74915304 Msa0043650:CDS 35.0%
TCGGAAAATTTGAGTCTCAT+TGG - chr1_1:74915569-74915588 None:intergenic 35.0%
ATATGTTGAGGATGCTACAA+GGG - chr1_1:74915594-74915613 None:intergenic 35.0%
TATATGTTGAGGATGCTACA+AGG - chr1_1:74915595-74915614 None:intergenic 35.0%
AGGCTTGATAAAGGAAAAGA+AGG - chr1_1:74915669-74915688 None:intergenic 35.0%
! TTTTCCTTTATCAAGCCTTG+CGG + chr1_1:74915671-74915690 Msa0043650:three_prime_UTR 35.0%
! TAGTAATATTTTGTGCCGCA+AGG - chr1_1:74915689-74915708 None:intergenic 35.0%
! ACCTCGGAATGTGTTTGTTA+GGG - chr1_1:74909964-74909983 None:intergenic 40.0%
TACCTCGGAATGTGTTTGTT+AGG - chr1_1:74909965-74909984 None:intergenic 40.0%
! GATTCAAAGTGGCATTGGAT+CGG - chr1_1:74909989-74910008 None:intergenic 40.0%
GAAAAGAGAGAGATTATGGG+TGG - chr1_1:74910017-74910036 None:intergenic 40.0%
TAAAGAGAAAGAGAGGCTTC+AGG + chr1_1:74910227-74910246 Msa0043650:five_prime_UTR 40.0%
CAGGTCTATGGATCAAAAGA+TGG + chr1_1:74910246-74910265 Msa0043650:exon 40.0%
GAAACGCCTAAAACTTCGTA+AGG - chr1_1:74910304-74910323 None:intergenic 40.0%
! GAGAGCAAGTTTTCTGTAAG+CGG - chr1_1:74910356-74910375 None:intergenic 40.0%
GGGTTCTACAGTTGTACTAA+TGG - chr1_1:74910505-74910524 None:intergenic 40.0%
!! ACTAAAGGTTGGTGCCTTTA+GGG - chr1_1:74910576-74910595 None:intergenic 40.0%
GGGTTGTGATGATTTGAATG+AGG - chr1_1:74910791-74910810 None:intergenic 40.0%
!! TATAGTGAGATAGCGGATAG+GGG - chr1_1:74911148-74911167 None:intergenic 40.0%
!! CTATAGTGAGATAGCGGATA+GGG - chr1_1:74911149-74911168 None:intergenic 40.0%
GATTGTTGGCATTCTTGTCA+GGG - chr1_1:74911247-74911266 None:intergenic 40.0%
!! TTCTGAAGCTTCAGGATTGT+TGG - chr1_1:74911261-74911280 None:intergenic 40.0%
TATCTGACCCAGAAAAGAGA+AGG + chr1_1:74911315-74911334 Msa0043650:CDS 40.0%
TGGATTCACATGGAAAGAAG+AGG - chr1_1:74911376-74911395 None:intergenic 40.0%
!! AGAAGAGCTTTGGATTCACA+TGG - chr1_1:74911386-74911405 None:intergenic 40.0%
! TTTATCTCTCCCTCCCTTTT+TGG + chr1_1:74911415-74911434 Msa0043650:intron 40.0%
CACTCAAATTCCAAGTTGCA+GGG - chr1_1:74911674-74911693 None:intergenic 40.0%
TCACTCAAATTCCAAGTTGC+AGG - chr1_1:74911675-74911694 None:intergenic 40.0%
!! TTTGCAGCTTTATTCAGGTG+TGG + chr1_1:74912185-74912204 Msa0043650:intron 40.0%
!! TTGCAGCTTTATTCAGGTGT+GGG + chr1_1:74912186-74912205 Msa0043650:intron 40.0%
! CCGAAATGGTAGTCTTGATT+GGG - chr1_1:74912300-74912319 None:intergenic 40.0%
CCCAATCAAGACTACCATTT+CGG + chr1_1:74912297-74912316 Msa0043650:CDS 40.0%
CAATCTGATGCCATATTAGC+CGG - chr1_1:74912625-74912644 None:intergenic 40.0%
TTTCGAACAAGATGCAAACG+GGG + chr1_1:74912677-74912696 Msa0043650:CDS 40.0%
!! TCCCTACGTTCCTTTTTAAG+TGG + chr1_1:74912731-74912750 Msa0043650:intron 40.0%
CACCACTTAAAAAGGAACGT+AGG - chr1_1:74912736-74912755 None:intergenic 40.0%
!! GGAGTAAAAGAAGAAGCACT+AGG - chr1_1:74913009-74913028 None:intergenic 40.0%
TTGATACACTCACCATGAGT+AGG + chr1_1:74913083-74913102 Msa0043650:intron 40.0%
TTACAACCTCAACCTACTCA+TGG - chr1_1:74913098-74913117 None:intergenic 40.0%
GTAAAAGGGAAATGGAGATG+AGG - chr1_1:74913386-74913405 None:intergenic 40.0%
AACAGCACGAATTTCTATGG+TGG + chr1_1:74913499-74913518 Msa0043650:intron 40.0%
ATTCAACTGTGAATGCGGTA+TGG + chr1_1:74913898-74913917 Msa0043650:intron 40.0%
!!! AGTGGTCACTTTTAGTGTTG+TGG + chr1_1:74913968-74913987 Msa0043650:intron 40.0%
AGATACCACCCAAAAACTTC+AGG + chr1_1:74914261-74914280 Msa0043650:CDS 40.0%
GCCTGAAACGTATTCAGAAA+AGG - chr1_1:74914411-74914430 None:intergenic 40.0%
TCTGAATACGTTTCAGGCAT+TGG + chr1_1:74914413-74914432 Msa0043650:intron 40.0%
ACAACTTAATGGAGCAGATG+GGG - chr1_1:74914625-74914644 None:intergenic 40.0%
CACAACTTAATGGAGCAGAT+GGG - chr1_1:74914626-74914645 None:intergenic 40.0%
! TCTAGCTTGCCACAACTTAA+TGG - chr1_1:74914636-74914655 None:intergenic 40.0%
! AGTTGCAGATTTTTCTCACC+TGG + chr1_1:74914658-74914677 Msa0043650:intron 40.0%
! TTTTTCTCACCTGGCTTACT+TGG + chr1_1:74914667-74914686 Msa0043650:intron 40.0%
TCTGCAGAAATGGTGAAAAC+AGG - chr1_1:74914887-74914906 None:intergenic 40.0%
ACAGTGAGAATCTGCAGAAA+TGG - chr1_1:74914897-74914916 None:intergenic 40.0%
!! TAGATGAGCTTCTGAAGCAA+AGG + chr1_1:74915094-74915113 Msa0043650:CDS 40.0%
!! AGATGAGCTTCTGAAGCAAA+GGG + chr1_1:74915095-74915114 Msa0043650:CDS 40.0%
TGACAATGGTGAAGGTAGAA+TGG - chr1_1:74915128-74915147 None:intergenic 40.0%
AAGTTTGATCCCATGACTGA+TGG - chr1_1:74915387-74915406 None:intergenic 40.0%
ACTACACCCAATATATCCAC+GGG - chr1_1:74915417-74915436 None:intergenic 40.0%
CACTACACCCAATATATCCA+CGG - chr1_1:74915418-74915437 None:intergenic 40.0%
!! TTGGTTTGTGATGCAGTCAA+AGG + chr1_1:74915503-74915522 Msa0043650:three_prime_UTR 40.0%
! AAACCAAAGCAGCATTGGGA+TGG + chr1_1:74909730-74909749 Msa0043650:five_prime_UTR 45.0%
TGTAAGACCAAGTTGCGAGA+TGG - chr1_1:74909817-74909836 None:intergenic 45.0%
TCCCTAACAAACACATTCCG+AGG + chr1_1:74909960-74909979 Msa0043650:five_prime_UTR 45.0%
AAAGAGAGGCTTCAGGTCTA+TGG + chr1_1:74910234-74910253 Msa0043650:exon 45.0%
! CGTGACCCTTACGAAGTTTT+AGG + chr1_1:74910295-74910314 Msa0043650:CDS 45.0%
!!! CGAAGTTTTAGGCGTTTCCA+AGG + chr1_1:74910306-74910325 Msa0043650:CDS 45.0%
TTCCAAGGAATCATCCGATC+AGG + chr1_1:74910321-74910340 Msa0043650:CDS 45.0%
TTCCTGATCGGATGATTCCT+TGG - chr1_1:74910326-74910345 None:intergenic 45.0%
!! GACTAAAGGTTGGTGCCTTT+AGG - chr1_1:74910577-74910596 None:intergenic 45.0%
AGAGGGTGAAAACTGATAGC+AGG - chr1_1:74911043-74911062 None:intergenic 45.0%
!! ATAGTGAGATAGCGGATAGG+GGG - chr1_1:74911147-74911166 None:intergenic 45.0%
!! GCTATAGTGAGATAGCGGAT+AGG - chr1_1:74911150-74911169 None:intergenic 45.0%
!!! CACTATAGCTTTTCTAGGGC+CGG + chr1_1:74911161-74911180 Msa0043650:intron 45.0%
GGATTGTTGGCATTCTTGTC+AGG - chr1_1:74911248-74911267 None:intergenic 45.0%
! CGTACTGCCTTCTCTTTTCT+GGG - chr1_1:74911325-74911344 None:intergenic 45.0%
! TCGTACTGCCTTCTCTTTTC+TGG - chr1_1:74911326-74911345 None:intergenic 45.0%
TTCATGCTGCCAAAAAGGGA+GGG - chr1_1:74911427-74911446 None:intergenic 45.0%
TTTCATGCTGCCAAAAAGGG+AGG - chr1_1:74911428-74911447 None:intergenic 45.0%
TCAAATTCCAAGTTGCAGGG+AGG - chr1_1:74911671-74911690 None:intergenic 45.0%
GAAACGCAAAAGAGCTTTCG+AGG - chr1_1:74912027-74912046 None:intergenic 45.0%
TGATGCTGATAGCATGGACA+TGG + chr1_1:74912124-74912143 Msa0043650:CDS 45.0%
! GCCGAAATGGTAGTCTTGAT+TGG - chr1_1:74912301-74912320 None:intergenic 45.0%
ACAGATGTTCCCATTGGAAG+GGG - chr1_1:74912367-74912386 None:intergenic 45.0%
GACAGATGTTCCCATTGGAA+GGG - chr1_1:74912368-74912387 None:intergenic 45.0%
TGACAGATGTTCCCATTGGA+AGG - chr1_1:74912369-74912388 None:intergenic 45.0%
TTCGAACAAGATGCAAACGG+GGG + chr1_1:74912678-74912697 Msa0043650:CDS 45.0%
AACAAGTCGAAGGGAGATGA+GGG - chr1_1:74913030-74913049 None:intergenic 45.0%
! ATTCAACTGCAGAAGCGTGA+AGG - chr1_1:74913192-74913211 None:intergenic 45.0%
! ACTGGCGTTTTCTTCAAGCA+TGG + chr1_1:74913287-74913306 Msa0043650:intron 45.0%
AACAGGAAACACAAGGCCAA+AGG - chr1_1:74913536-74913555 None:intergenic 45.0%
CAGGAAGATAGTGAGAAGAC+TGG + chr1_1:74913822-74913841 Msa0043650:intron 45.0%
! TTTCTTTGTTGCGGGCTGTT+TGG + chr1_1:74913943-74913962 Msa0043650:intron 45.0%
!! CTTTTAAAGAAAGCCCCCTC+AGG - chr1_1:74914017-74914036 None:intergenic 45.0%
CTGAGGGGGCTTTCTTTAAA+AGG + chr1_1:74914015-74914034 Msa0043650:CDS 45.0%
! GGGGGCTTTCTTTAAAAGGT+TGG + chr1_1:74914019-74914038 Msa0043650:CDS 45.0%
GAAGTTTCGGAACTAAAGCC+TGG + chr1_1:74914059-74914078 Msa0043650:CDS 45.0%
ACGGCAAATATATGTGTGCC+AGG - chr1_1:74914080-74914099 None:intergenic 45.0%
TGATGATCAGCTATGCTGTG+GGG - chr1_1:74914592-74914611 None:intergenic 45.0%
CTGATGATCAGCTATGCTGT+GGG - chr1_1:74914593-74914612 None:intergenic 45.0%
ACTGATGATCAGCTATGCTG+TGG - chr1_1:74914594-74914613 None:intergenic 45.0%
CCACAACTTAATGGAGCAGA+TGG - chr1_1:74914627-74914646 None:intergenic 45.0%
! CCATCTGCTCCATTAAGTTG+TGG + chr1_1:74914624-74914643 Msa0043650:intron 45.0%
CTTCAGAAGCTCATCTACCT+GGG - chr1_1:74915091-74915110 None:intergenic 45.0%
!! AGTACTGGTTGGCTTGACAA+TGG - chr1_1:74915142-74915161 None:intergenic 45.0%
AGATGGAGGGTCAGATAGTA+AGG + chr1_1:74915242-74915261 Msa0043650:CDS 45.0%
CAACCTCAATCTTAAGGGCT+CGG + chr1_1:74915290-74915309 Msa0043650:CDS 45.0%
AACCTCAATCTTAAGGGCTC+GGG + chr1_1:74915291-74915310 Msa0043650:CDS 45.0%
CTTGAGTGACCATCAGTCAT+GGG + chr1_1:74915375-74915394 Msa0043650:three_prime_UTR 45.0%
ATCAAACTTAAAGCAGCCCG+TGG + chr1_1:74915398-74915417 Msa0043650:three_prime_UTR 45.0%
AAAGCAGCCCGTGGATATAT+TGG + chr1_1:74915407-74915426 Msa0043650:three_prime_UTR 45.0%
AAGCAGCCCGTGGATATATT+GGG + chr1_1:74915408-74915427 Msa0043650:three_prime_UTR 45.0%
GGTTCCTCAAAGTTGTGAAC+TGG + chr1_1:74915464-74915483 Msa0043650:three_prime_UTR 45.0%
CCAACCAGTTCACAACTTTG+AGG - chr1_1:74915471-74915490 None:intergenic 45.0%
CCTCAAAGTTGTGAACTGGT+TGG + chr1_1:74915468-74915487 Msa0043650:three_prime_UTR 45.0%
TGAGGATGCTACAAGGGAAT+CGG - chr1_1:74915588-74915607 None:intergenic 45.0%
! GGTTTGGTTTCGCTAGAGTC+AGG - chr1_1:74909847-74909866 None:intergenic 50.0%
! TGGCATTGGATCGGTTACCT+CGG - chr1_1:74909980-74909999 None:intergenic 50.0%
CACGCGATTCAAAGTGGCAT+TGG - chr1_1:74909994-74910013 None:intergenic 50.0%
TAAGGGTCACGTCGAATTGC+TGG - chr1_1:74910286-74910305 None:intergenic 50.0%
ACCCTAATCCCTCTCCCTAA+AGG + chr1_1:74910559-74910578 Msa0043650:intron 50.0%
! GCCTTTAGGGAGAGGGATTA+GGG - chr1_1:74910563-74910582 None:intergenic 50.0%
! TGCCTTTAGGGAGAGGGATT+AGG - chr1_1:74910564-74910583 None:intergenic 50.0%
ATCTTGTCAGGGGCAACCTT+AGG - chr1_1:74910756-74910775 None:intergenic 50.0%
CTGTTGCTAGAGTAGCACCT+TGG + chr1_1:74910896-74910915 Msa0043650:intron 50.0%
GGATAGCAGAGCATAGTGTC+CGG - chr1_1:74911183-74911202 None:intergenic 50.0%
GTACGACAGTGCAGGATTTG+AGG + chr1_1:74911340-74911359 Msa0043650:CDS 50.0%
ATGGCAAGCTCCCCAGAAAA+GGG - chr1_1:74911545-74911564 None:intergenic 50.0%
CATATTGCCTCCCTGCAACT+TGG + chr1_1:74911661-74911680 Msa0043650:intron 50.0%
GGCACTTGATGCTGATAGCA+TGG + chr1_1:74912118-74912137 Msa0043650:intron 50.0%
TACAGTCAGACCCCTTCCAA+TGG + chr1_1:74912354-74912373 Msa0043650:CDS 50.0%
ACAGTCAGACCCCTTCCAAT+GGG + chr1_1:74912355-74912374 Msa0043650:CDS 50.0%
CCACTGACAGATGTTCCCAT+TGG - chr1_1:74912373-74912392 None:intergenic 50.0%
CCAATGGGAACATCTGTCAG+TGG + chr1_1:74912370-74912389 Msa0043650:CDS 50.0%
GGGAACATCTGTCAGTGGAA+AGG + chr1_1:74912375-74912394 Msa0043650:CDS 50.0%
AATGAGCAGCAAGCTGAGTC+CGG + chr1_1:74912527-74912546 Msa0043650:CDS 50.0%
GGGCTATGGTTTAGCATTGC+AGG + chr1_1:74912698-74912717 Msa0043650:CDS 50.0%
CAACAAGTCGAAGGGAGATG+AGG - chr1_1:74913031-74913050 None:intergenic 50.0%
CACTCACCATGAGTAGGTTG+AGG + chr1_1:74913089-74913108 Msa0043650:intron 50.0%
TCTCACAGGCAGATATCCCA+TGG + chr1_1:74913221-74913240 Msa0043650:intron 50.0%
GAAATGGAGATGAGGGTGGA+GGG - chr1_1:74913378-74913397 None:intergenic 50.0%
AAGGGAAATGGAGATGAGGG+TGG - chr1_1:74913382-74913401 None:intergenic 50.0%
ACTGGCAAAGTGACATCTGC+TGG + chr1_1:74913840-74913859 Msa0043650:CDS 50.0%
TGTTGTGGTGCAGTTAGCGA+TGG + chr1_1:74913983-74914002 Msa0043650:intron 50.0%
GCTTCAGAAGCTCATCTACC+TGG - chr1_1:74915092-74915111 None:intergenic 50.0%
!! GAGCTTCTGAAGCAAAGGGA+CGG + chr1_1:74915099-74915118 Msa0043650:CDS 50.0%
!! GGTTGGCTTGACAATGGTGA+AGG - chr1_1:74915136-74915155 None:intergenic 50.0%
GTCAAGCCAACCAGTACTAG+TGG + chr1_1:74915144-74915163 Msa0043650:CDS 50.0%
!! CCACTTCCACTAGTACTGGT+TGG - chr1_1:74915153-74915172 None:intergenic 50.0%
CCAACCAGTACTAGTGGAAG+TGG + chr1_1:74915150-74915169 Msa0043650:CDS 50.0%
! ACTGCCACTTCCACTAGTAC+TGG - chr1_1:74915157-74915176 None:intergenic 50.0%
ATTCCAAAGGTGAGAGCCCT+GGG + chr1_1:74915217-74915236 Msa0043650:CDS 50.0%
AACCCGAGCCCTTAAGATTG+AGG - chr1_1:74915296-74915315 None:intergenic 50.0%
GCTTGAGTGACCATCAGTCA+TGG + chr1_1:74915374-74915393 Msa0043650:three_prime_UTR 50.0%
TGTGCCGCAAGGCTTGATAA+AGG - chr1_1:74915678-74915697 None:intergenic 50.0%
! TGGCCATCCCAATGCTGCTT+TGG - chr1_1:74909736-74909755 None:intergenic 55.0%
AAGGACGCCATCTCGCAACT+TGG + chr1_1:74909807-74909826 Msa0043650:five_prime_UTR 55.0%
! GGTTGGTGCCTTTAGGGAGA+GGG - chr1_1:74910570-74910589 None:intergenic 55.0%
!! AGGTTGGTGCCTTTAGGGAG+AGG - chr1_1:74910571-74910590 None:intergenic 55.0%
!! TGAGATAGCGGATAGGGGGA+TGG - chr1_1:74911143-74911162 None:intergenic 55.0%
AGAAGGCAGTACGACAGTGC+AGG + chr1_1:74911332-74911351 Msa0043650:CDS 55.0%
GATGGCAAGCTCCCCAGAAA+AGG - chr1_1:74911546-74911565 None:intergenic 55.0%
ATGAGCAGCAAGCTGAGTCC+GGG + chr1_1:74912528-74912547 Msa0043650:CDS 55.0%
CAAGATGCAAACGGGGGCTA+TGG + chr1_1:74912684-74912703 Msa0043650:CDS 55.0%
TGTAAGCAGTCCCAACCACC+TGG + chr1_1:74913113-74913132 Msa0043650:intron 55.0%
GTAAGCAGTCCCAACCACCT+GGG + chr1_1:74913114-74913133 Msa0043650:intron 55.0%
TAAGCAGTCCCAACCACCTG+GGG + chr1_1:74913115-74913134 Msa0043650:intron 55.0%
GGAAATGGAGATGAGGGTGG+AGG - chr1_1:74913379-74913398 None:intergenic 55.0%
GGTGGCTGCTAACAAGCCTT+TGG + chr1_1:74913517-74913536 Msa0043650:intron 55.0%
! GTTGCGGGCTGTTTGGAAAG+TGG + chr1_1:74913950-74913969 Msa0043650:intron 55.0%
!! TCAGGCATTGGCACGCTATC+AGG + chr1_1:74914425-74914444 Msa0043650:intron 55.0%
ATCGGCAAGCCAAGTAAGCC+AGG - chr1_1:74914679-74914698 None:intergenic 55.0%
GATTCCAAAGGTGAGAGCCC+TGG + chr1_1:74915216-74915235 Msa0043650:CDS 55.0%
TTCCAAAGGTGAGAGCCCTG+GGG + chr1_1:74915218-74915237 Msa0043650:CDS 55.0%
GGGTGGCACGCGATTCAAAG+TGG - chr1_1:74910000-74910019 None:intergenic 60.0%
TGTTCTCGCCCCAGGTGGTT+GGG - chr1_1:74913126-74913145 None:intergenic 60.0%
ATGTTCTCGCCCCAGGTGGT+TGG - chr1_1:74913127-74913146 None:intergenic 60.0%
AACCACCTGGGGCGAGAACA+TGG + chr1_1:74913126-74913145 Msa0043650:intron 60.0%
ACCACCTGGGGCGAGAACAT+GGG + chr1_1:74913127-74913146 Msa0043650:intron 60.0%
TGGAGATGAGGGTGGAGGGA+GGG - chr1_1:74913374-74913393 None:intergenic 60.0%
ATGGAGATGAGGGTGGAGGG+AGG - chr1_1:74913375-74913394 None:intergenic 60.0%
GGTGCAGTTAGCGATGGCCA+AGG + chr1_1:74913989-74914008 Msa0043650:intron 60.0%
AGCGATGGCCAAGGATCCTG+AGG + chr1_1:74913998-74914017 Msa0043650:CDS 60.0%
GCGATGGCCAAGGATCCTGA+GGG + chr1_1:74913999-74914018 Msa0043650:CDS 60.0%
CGATGGCCAAGGATCCTGAG+GGG + chr1_1:74914000-74914019 Msa0043650:CDS 60.0%
GATGGCCAAGGATCCTGAGG+GGG + chr1_1:74914001-74914020 Msa0043650:CDS 60.0%
GAAAGCCCCCTCAGGATCCT+TGG - chr1_1:74914009-74914028 None:intergenic 60.0%
TTCCCCAGGGCTCTCACCTT+TGG - chr1_1:74915223-74915242 None:intergenic 60.0%
AGAGCCCTGGGGAAGATGGA+GGG + chr1_1:74915229-74915248 Msa0043650:CDS 60.0%
CTGACCCTCCATCTTCCCCA+GGG - chr1_1:74915236-74915255 None:intergenic 60.0%
TCTGACCCTCCATCTTCCCC+AGG - chr1_1:74915237-74915256 None:intergenic 60.0%
TCCCATGTTCTCGCCCCAGG+TGG - chr1_1:74913131-74913150 None:intergenic 65.0%
GAGTCCCATGTTCTCGCCCC+AGG - chr1_1:74913134-74913153 None:intergenic 65.0%
GGTGAGAGCCCTGGGGAAGA+TGG + chr1_1:74915225-74915244 Msa0043650:CDS 65.0%
GAGAGCCCTGGGGAAGATGG+AGG + chr1_1:74915228-74915247 Msa0043650:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 74909708 74915739 74909708 ID=Msa0043650;Name=Msa0043650
chr1_1 mRNA 74909708 74915739 74909708 ID=Msa0043650-mRNA-1;Parent=Msa0043650;Name=Msa0043650-mRNA-1;_AED=0.12;_eAED=0.12;_QI=336|1|1|1|0.90|0.83|12|404|414
chr1_1 exon 74909708 74909981 74909708 ID=Msa0043650-mRNA-1:exon:25272;Parent=Msa0043650-mRNA-1
chr1_1 exon 74910191 74910377 74910191 ID=Msa0043650-mRNA-1:exon:25273;Parent=Msa0043650-mRNA-1
chr1_1 exon 74911238 74911361 74911238 ID=Msa0043650-mRNA-1:exon:25274;Parent=Msa0043650-mRNA-1
chr1_1 exon 74912119 74912201 74912119 ID=Msa0043650-mRNA-1:exon:25275;Parent=Msa0043650-mRNA-1
chr1_1 exon 74912285 74912396 74912285 ID=Msa0043650-mRNA-1:exon:25276;Parent=Msa0043650-mRNA-1
chr1_1 exon 74912488 74912592 74912488 ID=Msa0043650-mRNA-1:exon:25277;Parent=Msa0043650-mRNA-1
chr1_1 exon 74912669 74912719 74912669 ID=Msa0043650-mRNA-1:exon:25278;Parent=Msa0043650-mRNA-1
chr1_1 exon 74913825 74913914 74913825 ID=Msa0043650-mRNA-1:exon:25279;Parent=Msa0043650-mRNA-1
chr1_1 exon 74913996 74914104 74913996 ID=Msa0043650-mRNA-1:exon:25280;Parent=Msa0043650-mRNA-1
chr1_1 exon 74914200 74914348 74914200 ID=Msa0043650-mRNA-1:exon:25281;Parent=Msa0043650-mRNA-1
chr1_1 exon 74914429 74914482 74914429 ID=Msa0043650-mRNA-1:exon:25282;Parent=Msa0043650-mRNA-1
chr1_1 exon 74915093 74915739 74915093 ID=Msa0043650-mRNA-1:exon:25283;Parent=Msa0043650-mRNA-1
chr1_1 five_prime_UTR 74909708 74909981 74909708 ID=Msa0043650-mRNA-1:five_prime_utr;Parent=Msa0043650-mRNA-1
chr1_1 five_prime_UTR 74910191 74910252 74910191 ID=Msa0043650-mRNA-1:five_prime_utr;Parent=Msa0043650-mRNA-1
chr1_1 CDS 74910253 74910377 74910253 ID=Msa0043650-mRNA-1:cds;Parent=Msa0043650-mRNA-1
chr1_1 CDS 74911238 74911361 74911238 ID=Msa0043650-mRNA-1:cds;Parent=Msa0043650-mRNA-1
chr1_1 CDS 74912119 74912201 74912119 ID=Msa0043650-mRNA-1:cds;Parent=Msa0043650-mRNA-1
chr1_1 CDS 74912285 74912396 74912285 ID=Msa0043650-mRNA-1:cds;Parent=Msa0043650-mRNA-1
chr1_1 CDS 74912488 74912592 74912488 ID=Msa0043650-mRNA-1:cds;Parent=Msa0043650-mRNA-1
chr1_1 CDS 74912669 74912719 74912669 ID=Msa0043650-mRNA-1:cds;Parent=Msa0043650-mRNA-1
chr1_1 CDS 74913825 74913914 74913825 ID=Msa0043650-mRNA-1:cds;Parent=Msa0043650-mRNA-1
chr1_1 CDS 74913996 74914104 74913996 ID=Msa0043650-mRNA-1:cds;Parent=Msa0043650-mRNA-1
chr1_1 CDS 74914200 74914348 74914200 ID=Msa0043650-mRNA-1:cds;Parent=Msa0043650-mRNA-1
chr1_1 CDS 74914429 74914482 74914429 ID=Msa0043650-mRNA-1:cds;Parent=Msa0043650-mRNA-1
chr1_1 CDS 74915093 74915335 74915093 ID=Msa0043650-mRNA-1:cds;Parent=Msa0043650-mRNA-1
chr1_1 three_prime_UTR 74915336 74915739 74915336 ID=Msa0043650-mRNA-1:three_prime_utr;Parent=Msa0043650-mRNA-1
Gene Sequence

>Msa0043650

ATGGATCAAAAGATGGAAGGAACGTCTGCACCAGCAATTCGACGTGACCCTTACGAAGTTTTAGGCGTTTCCAAGGAATCATCCGATCAGGAAATTAAAACCGCTTACAGAAAACTTGCTCTCAAGTATCACCCTGACAAGAATGCCAACAATCCTGAAGCTTCAGAACTATTCAAAGAGGTTGCATATTCTTATAATATCTTATCTGACCCAGAAAAGAGAAGGCAGTACGACAGTGCAGGATTTGAGGCACTTGATGCTGATAGCATGGACATGGAAATCGATTTATCTAATCTTGGGACTGTGAACACAATGTTTGCAGCTTTATTCAGCAAGCTGGGTGTCCCAATCAAGACTACCATTTCGGCTAATGTTCTTGAAGAAGCTTTGAATGGCACTGTTACAGTCAGACCCCTTCCAATGGGAACATCTGTCAGTGGAAAGGTAGAGAAGCAATGTGCTCATTTTTTTGGTGTGACAATAAATGAGCAGCAAGCTGAGTCCGGGATTGTAGTAAGAGTTACTTCAACTGCACAAAGCAAATTCAAGTTGCTCTATTTCGAACAAGATGCAAACGGGGGCTATGGTTTAGCATTGCAGGAAGATAGTGAGAAGACTGGCAAAGTGACATCTGCTGGAATGTATTTCTTACATTTTCAAGTGTACAGAATGGATTCAACTGTGAATGCGTTAGCGATGGCCAAGGATCCTGAGGGGGCTTTCTTTAAAAGGTTGGAAGGTCTTCAACCTTGTGAAGTTTCGGAACTAAAGCCTGGCACACATATATTTGCCGTTTATGGCGATAACTTCTTTAAGACTGCTAGCTATACAATTGAAGCAGTATGTGCAAAATCACATGAAGATACCACCCAAAAACTTCAGGATATTGAGGCTCAAATTTTAAGAAAGAGGAATGAGCTACGGCAATTCGAATCAGAATATAGAAAGGCATTGGCACGCTATCAGGAAGTGACAGACAGATACACAAAAGAAAAACAGTCTGTAGATGAGCTTCTGAAGCAAAGGGACGGTATCCATTCTACCTTCACCATTGTCAAGCCAACCAGTACTAGTGGAAGTGGCAGTAATTTAAGCAATGGAAGTTCTAGCAAAATTTCTGGTGAAGATTCCAAAGGTGAGAGCCCTGGGGAAGATGGAGGGTCAGATAGTAAGGATAAATCAGGCAAAAAGAAATGGTTCAACCTCAATCTTAAGGGCTCGGGTTCTGATAAGAAGTTGATTTAA
Protein sequence

>Msa0043650

MDQKMEGTSAPAIRRDPYEVLGVSKESSDQEIKTAYRKLALKYHPDKNANNPEASELFKEVAYSYNILSDPEKRRQYDSAGFEALDADSMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPMGTSVSGKVEKQCAHFFGVTINEQQAESGIVVRVTSTAQSKFKLLYFEQDANGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEGAFFKRLEGLQPCEVSELKPGTHIFAVYGDNFFKTASYTIEAVCAKSHEDTTQKLQDIEAQILRKRNELRQFESEYRKALARYQEVTDRYTKEKQSVDELLKQRDGIHSTFTIVKPTSTSGSGSNLSNGSSSKISGEDSKGESPGEDGGSDSKDKSGKKKWFNLNLKGSGSDKKLI*