AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0187910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0187910 MtrunA17_Chr2g0285411 99.338 302 2 0 1 302 1 302 0.0 629
Msa0187910 MtrunA17_Chr8g0342441 40.351 285 146 10 15 298 58 319 3.87e-57 187
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0187910 AT1G30300.1 75.410 305 72 1 1 302 2 306 4.68e-178 495
Msa0187910 AT1G30300.3 75.410 305 72 1 1 302 2 306 4.68e-178 495
Msa0187910 AT1G30300.2 75.410 305 72 1 1 302 2 306 4.68e-178 495
Msa0187910 AT1G30300.4 75.410 305 72 1 1 302 2 306 4.68e-178 495
Msa0187910 AT4G03610.4 64.821 307 96 5 1 302 1 300 4.31e-142 404
Msa0187910 AT4G03610.2 64.111 287 91 5 1 282 1 280 9.65e-130 372
Msa0187910 AT4G03610.1 61.564 307 91 6 1 302 1 285 6.42e-129 370
Msa0187910 AT4G03610.3 66.008 253 76 4 1 250 1 246 6.28e-117 337
Msa0187910 AT3G13800.1 40.493 284 146 10 16 298 78 339 3.92e-53 178
Msa0187910 AT3G13800.4 40.493 284 146 10 16 298 78 339 3.92e-53 178
Msa0187910 AT3G13800.3 40.502 279 143 10 21 298 1 257 9.20e-52 172
Msa0187910 AT3G13800.2 40.502 279 143 10 21 298 1 257 9.20e-52 172

Find 101 sgRNAs with CRISPR-Local

Find 387 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAGAGAAGTTTCCTTATT+TGG 0.135750 2_1:+2732210 Msa0187910:CDS
GAAAGAGAGTACCTGTAATT+AGG 0.152242 2_1:-2730039 None:intergenic
TCTTTCTCTCTCATCTCTTC+TGG 0.177721 2_1:+2729830 Msa0187910:five_prime_UTR
CGTTGTTTCTGAACCAAATA+AGG 0.179452 2_1:-2732223 None:intergenic
ATATCATTTGTTGGACTAAA+AGG 0.183530 2_1:-2731238 None:intergenic
ACAGTTGGATCTTCTAATAT+TGG 0.247221 2_1:+2732753 Msa0187910:CDS
GGGCATCTTTGAAAATATTA+AGG 0.254973 2_1:-2735180 None:intergenic
CCTAGGTTTGCTTTAGAAAC+TGG 0.258915 2_1:-2735201 None:intergenic
TAATATTGGATTCATTATAT+AGG 0.272370 2_1:+2732767 Msa0187910:CDS
AAAAGATTACATCTCTAATT+AGG 0.275025 2_1:-2735450 None:intergenic
TACATCTCTAATTAGGATAT+TGG 0.285182 2_1:-2735443 None:intergenic
TTGATGTTGGCAAGACGTTT+AGG 0.306067 2_1:+2730201 Msa0187910:CDS
TTGATCTTATTTAGATTCAT+TGG 0.307127 2_1:+2735155 Msa0187910:exon
TAAATAAGATCAACTGTATA+TGG 0.310412 2_1:-2735145 None:intergenic
TGACCCTGCAAAAGATTCTT+AGG 0.311116 2_1:-2735406 None:intergenic
TAACTCACAGAATCGATTCT+TGG 0.317245 2_1:-2730260 None:intergenic
AATATTGGATTCATTATATA+GGG 0.318957 2_1:+2732768 Msa0187910:CDS
CAGCAAAACTGTTGGTTCCT+AGG 0.324849 2_1:-2735218 None:intergenic
AAAGAGAGTACCTGTAATTA+GGG 0.331055 2_1:-2730038 None:intergenic
CGGAACAGGCTGTTCAAGTA+TGG 0.338495 2_1:+2729930 Msa0187910:CDS
TGAATGCTGACTCAGGTAGA+TGG 0.349627 2_1:-2731272 None:intergenic
TGGAGAGGATTACATCTGTT+TGG 0.350777 2_1:+2732445 Msa0187910:CDS
TGATGTTGGCAAGACGTTTA+GGG 0.356782 2_1:+2730202 Msa0187910:CDS
CATGAGTCATTCCAATCAAT+AGG 0.362542 2_1:-2733996 None:intergenic
GGAGAGGATTACATCTGTTT+GGG 0.373515 2_1:+2732446 Msa0187910:CDS
GTCATCAGTGATAATGTTCC+AGG 0.377002 2_1:-2732284 None:intergenic
GCGTTGATCTTTCTCGGAAC+AGG 0.380171 2_1:+2729916 Msa0187910:CDS
TTTACAGTCATTTCGAAAAG+TGG 0.389227 2_1:+2732724 Msa0187910:intron
GAATCGGCGTTGATCTTTCT+CGG 0.402893 2_1:+2729910 Msa0187910:CDS
CCAATCAATAGGGTTTGCTT+TGG 0.405132 2_1:-2733985 None:intergenic
CGACAATGACTGAGCGCAAA+CGG 0.414803 2_1:-2729998 None:intergenic
TGATTGTTATAAATAATAAA+TGG 0.427899 2_1:+2735518 Msa0187910:three_prime_UTR
CTTATATATCTGATGTTTCA+CGG 0.432628 2_1:+2732498 Msa0187910:CDS
CCAAAGCAAACCCTATTGAT+TGG 0.435743 2_1:+2733985 Msa0187910:CDS
GAAAATGAGAAGAAAGAAGA+AGG 0.447368 2_1:-2729797 None:intergenic
ATGAGTCATTCCAATCAATA+GGG 0.448438 2_1:-2733995 None:intergenic
TTCGATGGTTTGTTCATCAT+CGG 0.450026 2_1:+2730234 Msa0187910:CDS
ATTCCCGCGAGTACAGAATA+TGG 0.455050 2_1:+2732521 Msa0187910:CDS
CTAGGTTTGCTTTAGAAACT+GGG 0.456159 2_1:-2735200 None:intergenic
GTGGGATCAATATCATTTGT+TGG 0.461356 2_1:-2731247 None:intergenic
GAAGGGTTGCTCAGATGGCC+TGG 0.469919 2_1:+2732266 Msa0187910:CDS
AATTATATATTGATTGATGT+TGG 0.471348 2_1:+2730188 Msa0187910:CDS
CTACCTGAGTCAGCATTCAA+TGG 0.481362 2_1:+2731276 Msa0187910:CDS
GTCGTCGGTGCCGTTGGATG+TGG 0.481521 2_1:-2729872 None:intergenic
GAACATGCTGATGCAGTCCT+TGG 0.486458 2_1:+2731190 Msa0187910:CDS
GAATGCTGACTCAGGTAGAT+GGG 0.487485 2_1:-2731271 None:intergenic
AGTTCCGTCGTCGGTGCCGT+TGG 0.490322 2_1:-2729878 None:intergenic
TTGATGAGACACAGTACATT+GGG 0.499967 2_1:-2729955 None:intergenic
ATAGTGCAATTAACTGGTAA+AGG 0.503581 2_1:-2732346 None:intergenic
ATCTCTAATTAGGATATTGG+TGG 0.503723 2_1:-2735440 None:intergenic
AATACGAAGGGTTGCTCAGA+TGG 0.505761 2_1:+2732261 Msa0187910:CDS
TCTCATCTCTTCTGGATCTA+CGG 0.507309 2_1:+2729838 Msa0187910:five_prime_UTR
GACGCCATGGCCACATCCAA+CGG 0.511458 2_1:+2729862 Msa0187910:exon
ATGAGAAGAAAGAAGAAGGA+AGG 0.515376 2_1:-2729793 None:intergenic
TGCTGATGCAGTCCTTGGAT+TGG 0.516613 2_1:+2731195 Msa0187910:CDS
AGAAGAAAGAAGAAGGAAGG+TGG 0.521916 2_1:-2729790 None:intergenic
GTCATTTCGAAAAGTGGAGC+TGG 0.524520 2_1:+2732730 Msa0187910:intron
AAACCTGTGGAAAACAAAGA+TGG 0.525306 2_1:-2733862 None:intergenic
CGGAACTCCTCCCTCTGAAT+CGG 0.526733 2_1:+2729894 Msa0187910:CDS
AAAGATCAACGCCGATTCAG+AGG 0.529103 2_1:-2729905 None:intergenic
TTAATTGATTATTGTGGAAG+CGG 0.535963 2_1:+2730155 Msa0187910:CDS
TCTAATTAGGATATTGGTGG+GGG 0.540434 2_1:-2735437 None:intergenic
GACTGAGCGCAAACGGAACA+AGG 0.540973 2_1:-2729991 None:intergenic
GGTGCCGTTGGATGTGGCCA+TGG 0.542231 2_1:-2729866 None:intergenic
CTGGATCTACGGCGACGCCA+TGG 0.542253 2_1:+2729849 Msa0187910:exon
TCTCTAATTAGGATATTGGT+GGG 0.545609 2_1:-2735439 None:intergenic
TTAGGGAGACTGTGCTTCGA+TGG 0.547897 2_1:+2730219 Msa0187910:CDS
ACATCCAACGGCACCGACGA+CGG 0.551645 2_1:+2729874 Msa0187910:CDS
GAAAAGTGGAGCTGGACAGT+TGG 0.552369 2_1:+2732738 Msa0187910:CDS
CTCTAATTAGGATATTGGTG+GGG 0.557419 2_1:-2735438 None:intergenic
AAAAGATTCTTAGGATACAC+TGG 0.570189 2_1:-2735397 None:intergenic
ATTGATGAGACACAGTACAT+TGG 0.574414 2_1:-2729956 None:intergenic
GTTCAGAAACAACGCAAGGA+AGG 0.576002 2_1:+2732232 Msa0187910:CDS
TGAGTCAGCATTCAATGGAT+AGG 0.583236 2_1:+2731281 Msa0187910:CDS
CCGCCTTCCAGCAAAACTGT+TGG 0.583823 2_1:-2735226 None:intergenic
TATCCATTGAATGCTGACTC+AGG 0.588545 2_1:-2731279 None:intergenic
AAGATCAACGCCGATTCAGA+GGG 0.594996 2_1:-2729904 None:intergenic
TTGTGGATGTAGGTAATGCA+TGG 0.597231 2_1:+2732425 Msa0187910:intron
TCGATGTTAATTGATTATTG+TGG 0.600435 2_1:+2730149 Msa0187910:CDS
AGACTCTTGAAATTGTGAAG+AGG 0.603087 2_1:+2733956 Msa0187910:intron
ATTGATTATTGTGGAAGCGG+TGG 0.603095 2_1:+2730158 Msa0187910:CDS
TCAGTCATTGTCGATCCCAC+CGG 0.604108 2_1:+2730008 Msa0187910:CDS
ATCAACGCCGATTCAGAGGG+AGG 0.605019 2_1:-2729901 None:intergenic
AGAGGGAGGAGTTCCGTCGT+CGG 0.610126 2_1:-2729887 None:intergenic
ATACCATATTCTGTACTCGC+GGG 0.613014 2_1:-2732524 None:intergenic
ACGGAACAAGGAGGATCAGA+GGG 0.613154 2_1:-2729979 None:intergenic
AACGGAACAAGGAGGATCAG+AGG 0.614159 2_1:-2729980 None:intergenic
CTCGTACATCATCCAATCCA+AGG 0.621489 2_1:-2731207 None:intergenic
CCAGTTTCTAAAGCAAACCT+AGG 0.630294 2_1:+2735201 Msa0187910:three_prime_UTR
AGGAAGGACAAGAAATACGA+AGG 0.640963 2_1:+2732248 Msa0187910:CDS
CATACCATATTCTGTACTCG+CGG 0.641738 2_1:-2732525 None:intergenic
ACTTGTGATATTATAGTGTG+AGG 0.645922 2_1:+2735272 Msa0187910:three_prime_UTR
TAGCAGAAGCAACATAGATG+AGG 0.650944 2_1:-2735573 None:intergenic
TTTGGTTCAGAAACAACGCA+AGG 0.660626 2_1:+2732228 Msa0187910:CDS
GGAAGGACAAGAAATACGAA+GGG 0.662583 2_1:+2732249 Msa0187910:CDS
AATGCTGACTCAGGTAGATG+GGG 0.684919 2_1:-2731270 None:intergenic
CTAATTAGGATATTGGTGGG+GGG 0.709677 2_1:-2735436 None:intergenic
GATGTAGGTAATGCATGGAG+AGG 0.710977 2_1:+2732430 Msa0187910:intron
TCATGAGTTTGATCACCACA+AGG 0.734521 2_1:+2734014 Msa0187910:CDS
ATGCTGACTCAGGTAGATGG+GGG 0.739738 2_1:-2731269 None:intergenic
TGAGCGCAAACGGAACAAGG+AGG 0.758779 2_1:-2729988 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTAGATATTCATTATAT+AGG + chr2_1:2732834-2732853 Msa0187910:intron 10.0%
!! ATTTAGATATTCATTATATA+GGG + chr2_1:2732835-2732854 Msa0187910:intron 10.0%
!! ATTTAAACTAATTAACTAAT+CGG + chr2_1:2733774-2733793 Msa0187910:intron 10.0%
!!! TTTTGATACTATAATATTAT+TGG + chr2_1:2734454-2734473 Msa0187910:intron 10.0%
!! TGATTGTTATAAATAATAAA+TGG + chr2_1:2735518-2735537 Msa0187910:three_prime_UTR 10.0%
!!! AATTATATATTGATTGATGT+TGG + chr2_1:2730188-2730207 Msa0187910:CDS 15.0%
!! AAAATAGATAAATGACTATT+AGG + chr2_1:2730419-2730438 Msa0187910:intron 15.0%
!! ATAACTAATATTAACGATAA+TGG - chr2_1:2731467-2731486 None:intergenic 15.0%
!! TATTGTTAAAGATACATATT+GGG - chr2_1:2731604-2731623 None:intergenic 15.0%
!! TTATTGTTAAAGATACATAT+TGG - chr2_1:2731605-2731624 None:intergenic 15.0%
!! TTTCAATTATTTATTGTTAC+TGG - chr2_1:2731967-2731986 None:intergenic 15.0%
!! TAATATTGGATTCATTATAT+AGG + chr2_1:2732767-2732786 Msa0187910:CDS 15.0%
!! AATATTGGATTCATTATATA+GGG + chr2_1:2732768-2732787 Msa0187910:CDS 15.0%
!!! TATATTTTTCCTATTTTCAA+AGG - chr2_1:2733073-2733092 None:intergenic 15.0%
!!! TAGATGCTTTAAAAAATTTA+GGG + chr2_1:2733276-2733295 Msa0187910:intron 15.0%
!! TTTAAAAAATTTAGGGATAT+CGG + chr2_1:2733283-2733302 Msa0187910:intron 15.0%
!! TAATACTCCAATAATTAATT+GGG - chr2_1:2733452-2733471 None:intergenic 15.0%
!! TTAATACTCCAATAATTAAT+TGG - chr2_1:2733453-2733472 None:intergenic 15.0%
!!! GATTAGTTAATTAGTTTAAA+TGG - chr2_1:2733775-2733794 None:intergenic 15.0%
!! TTTAAACTAATTAACTAATC+GGG + chr2_1:2733775-2733794 Msa0187910:intron 15.0%
!!! ATATTTGACTTATTTACAAA+TGG - chr2_1:2734075-2734094 None:intergenic 15.0%
!!! TAATTTTTCACTTTTTTGTT+TGG + chr2_1:2734713-2734732 Msa0187910:intron 15.0%
!! AAAAGATGAAGGATTATTAA+CGG + chr2_1:2730499-2730518 Msa0187910:intron 20.0%
!! TAGCATCAAAATATTTCTTA+AGG + chr2_1:2730649-2730668 Msa0187910:intron 20.0%
!! TCAATTTCTTTGTTAATTAG+TGG - chr2_1:2730761-2730780 None:intergenic 20.0%
!!! AGAATAAAAAACTAGTTCTT+TGG + chr2_1:2731141-2731160 Msa0187910:intron 20.0%
!!! ATCTTAAGATTTGTTTATGT+AGG - chr2_1:2731389-2731408 None:intergenic 20.0%
!!! CAATTAATGAACTTTTCATT+TGG - chr2_1:2731880-2731899 None:intergenic 20.0%
!!! AGTAAAGCATTCTTAATATA+AGG - chr2_1:2732378-2732397 None:intergenic 20.0%
!! ATCTATTTGTTTCATCATTT+AGG + chr2_1:2732634-2732653 Msa0187910:intron 20.0%
!! TCTATTTGTTTCATCATTTA+GGG + chr2_1:2732635-2732654 Msa0187910:intron 20.0%
!!! TTCTGTTGTCAATTTTTTTT+GGG + chr2_1:2732798-2732817 Msa0187910:intron 20.0%
!!! CTAAATTTTTTAAAGCATCT+AGG - chr2_1:2733277-2733296 None:intergenic 20.0%
!!! CTAGATGCTTTAAAAAATTT+AGG + chr2_1:2733275-2733294 Msa0187910:intron 20.0%
!! AATAGAACCCAATTAATTAT+TGG + chr2_1:2733442-2733461 Msa0187910:intron 20.0%
!! TTCCATTGATATTTATATAC+AGG - chr2_1:2733580-2733599 None:intergenic 20.0%
!!! TAAAAATAGAAGCTTGTTTT+TGG - chr2_1:2733702-2733721 None:intergenic 20.0%
!! GATAGGATATATAAACTATA+GGG - chr2_1:2733732-2733751 None:intergenic 20.0%
!! TGATAGGATATATAAACTAT+AGG - chr2_1:2733733-2733752 None:intergenic 20.0%
!!! AGTTAATTAGTTTAAATGGT+TGG - chr2_1:2733771-2733790 None:intergenic 20.0%
!! GGTGGTAAAATATTATTAAT+TGG + chr2_1:2733924-2733943 Msa0187910:intron 20.0%
!! GATGAAAAAAATGATGATTT+GGG - chr2_1:2734326-2734345 None:intergenic 20.0%
!! TGATGAAAAAAATGATGATT+TGG - chr2_1:2734327-2734346 None:intergenic 20.0%
!!! ATCATTTTTTTCATCATGAA+CGG + chr2_1:2734331-2734350 Msa0187910:intron 20.0%
!!! ATTGAAGTTGATAAAATTTG+CGG + chr2_1:2734798-2734817 Msa0187910:intron 20.0%
!! TAAATAAGATCAACTGTATA+TGG - chr2_1:2735148-2735167 None:intergenic 20.0%
!!! TTGATCTTATTTAGATTCAT+TGG + chr2_1:2735155-2735174 Msa0187910:exon 20.0%
!! AAAAGATTACATCTCTAATT+AGG - chr2_1:2735453-2735472 None:intergenic 20.0%
! TCGATGTTAATTGATTATTG+TGG + chr2_1:2730149-2730168 Msa0187910:CDS 25.0%
! TTAATTGATTATTGTGGAAG+CGG + chr2_1:2730155-2730174 Msa0187910:CDS 25.0%
! AAAGATGAAGGATTATTAAC+GGG + chr2_1:2730500-2730519 Msa0187910:intron 25.0%
! ATTTCTTTGTTAATTAGTGG+TGG - chr2_1:2730758-2730777 None:intergenic 25.0%
!! ATGGCAACTAGAAATTTTAA+GGG - chr2_1:2730834-2730853 None:intergenic 25.0%
!! AATGGCAACTAGAAATTTTA+AGG - chr2_1:2730835-2730854 None:intergenic 25.0%
!!! TTAAAATTTCTAGTTGCCAT+TGG + chr2_1:2730834-2730853 Msa0187910:intron 25.0%
!! CATTTTGTAATCTGATTCTA+TGG + chr2_1:2730859-2730878 Msa0187910:intron 25.0%
!! ATATCATTTGTTGGACTAAA+AGG - chr2_1:2731241-2731260 None:intergenic 25.0%
! TTACATATCAAAACACACAA+CGG - chr2_1:2731319-2731338 None:intergenic 25.0%
! CTTACTTAAACTAAAAGTTC+TGG + chr2_1:2731491-2731510 Msa0187910:intron 25.0%
!!! CTTTTAAGAGCATTTATCTA+GGG - chr2_1:2731532-2731551 None:intergenic 25.0%
!!! TCTTTTAAGAGCATTTATCT+AGG - chr2_1:2731533-2731552 None:intergenic 25.0%
! AAAAGATATAGATAAGCACA+TGG + chr2_1:2731547-2731566 Msa0187910:intron 25.0%
!! ATTTTTGTTGAAGTTCTTTG+TGG + chr2_1:2731570-2731589 Msa0187910:intron 25.0%
!!! GGTATTGAATTTTTCTAGTA+TGG - chr2_1:2731915-2731934 None:intergenic 25.0%
!!! TTTGATTTTTGGACAAGTTT+TGG - chr2_1:2732011-2732030 None:intergenic 25.0%
!!! GTTCTGCTAAATTTGATTTT+TGG - chr2_1:2732022-2732041 None:intergenic 25.0%
! AAATTTAGCAGAACAATACT+AGG + chr2_1:2732028-2732047 Msa0187910:intron 25.0%
! AAAAAGATAGTGCAATTAAC+TGG - chr2_1:2732355-2732374 None:intergenic 25.0%
! CTTATATATCTGATGTTTCA+CGG + chr2_1:2732498-2732517 Msa0187910:CDS 25.0%
! CTATTTGTTTCATCATTTAG+GGG + chr2_1:2732636-2732655 Msa0187910:intron 25.0%
! TATTTGTTTCATCATTTAGG+GGG + chr2_1:2732637-2732656 Msa0187910:intron 25.0%
!! TTTTCGAAATGACTGTAAAA+AGG - chr2_1:2732723-2732742 None:intergenic 25.0%
!!! GTTCTGTTGTCAATTTTTTT+TGG + chr2_1:2732797-2732816 Msa0187910:intron 25.0%
!!! CTATGTGTTATTTTGTTTAG+TGG + chr2_1:2733010-2733029 Msa0187910:intron 25.0%
! TGTATGAGAAAAACGAAATA+TGG - chr2_1:2733168-2733187 None:intergenic 25.0%
!! AAGTAACTTGACTTTTCTAT+CGG - chr2_1:2733339-2733358 None:intergenic 25.0%
! CATTTATCAATGAGAAAGTA+AGG - chr2_1:2733417-2733436 None:intergenic 25.0%
!! GTAATGGAATATAGTGAATT+TGG + chr2_1:2733489-2733508 Msa0187910:intron 25.0%
! TTGATAGAAAATATCTGCTA+TGG + chr2_1:2733553-2733572 Msa0187910:intron 25.0%
! GTCCTGTATATAAATATCAA+TGG + chr2_1:2733575-2733594 Msa0187910:intron 25.0%
!!! GTTATTTCTTCATAGATGAT+AGG - chr2_1:2733749-2733768 None:intergenic 25.0%
! AAAAATACATAACATACCAG+AGG - chr2_1:2734184-2734203 None:intergenic 25.0%
! TCACCTTACTATAAGTTTAT+GGG - chr2_1:2734288-2734307 None:intergenic 25.0%
! AAAAAAAACATAAGACCAGA+GGG - chr2_1:2734438-2734457 None:intergenic 25.0%
!! ATGCACATTTTACAAAATCA+GGG - chr2_1:2734496-2734515 None:intergenic 25.0%
!! AATGCACATTTTACAAAATC+AGG - chr2_1:2734497-2734516 None:intergenic 25.0%
!!! ATTGTGTTGATTGACATTTA+TGG + chr2_1:2734522-2734541 Msa0187910:intron 25.0%
!!! TTGAAGTTGATAAAATTTGC+GGG + chr2_1:2734799-2734818 Msa0187910:intron 25.0%
! ATTACGTAATAGTAATGGTT+AGG - chr2_1:2734879-2734898 None:intergenic 25.0%
! CAAAGATTACGTAATAGTAA+TGG - chr2_1:2734884-2734903 None:intergenic 25.0%
! TATGGCTAAAGTACAAATAA+GGG - chr2_1:2734926-2734945 None:intergenic 25.0%
! ATTTATGCTCATGATGATTA+TGG - chr2_1:2734967-2734986 None:intergenic 25.0%
!! TGAGGAAATCTTGATTTTTA+TGG + chr2_1:2735290-2735309 Msa0187910:three_prime_UTR 25.0%
! TACATCTCTAATTAGGATAT+TGG - chr2_1:2735446-2735465 None:intergenic 25.0%
GAAAATGAGAAGAAAGAAGA+AGG - chr2_1:2729800-2729819 None:intergenic 30.0%
!! AAAGAGAGTACCTGTAATTA+GGG - chr2_1:2730041-2730060 None:intergenic 30.0%
TTGAAGCTTGATTTAGTGAT+TGG + chr2_1:2730339-2730358 Msa0187910:intron 30.0%
! TTTTATGAAAAGTTGCTCGT+GGG - chr2_1:2730402-2730421 None:intergenic 30.0%
! TTTTTATGAAAAGTTGCTCG+TGG - chr2_1:2730403-2730422 None:intergenic 30.0%
ATTTCATTTCAGATGTATGC+TGG + chr2_1:2730577-2730596 Msa0187910:intron 30.0%
!!! ATATTTTGATGCTATAGCCA+TGG - chr2_1:2730643-2730662 None:intergenic 30.0%
! TAATGTTGTCATTTCTGTGT+TGG + chr2_1:2730682-2730701 Msa0187910:intron 30.0%
!! TTCTGTGTTGGTTATAAAAC+TGG + chr2_1:2730694-2730713 Msa0187910:intron 30.0%
! TGTTGGTTATAAAACTGGTA+AGG + chr2_1:2730699-2730718 Msa0187910:intron 30.0%
! TGGCAACTAGAAATTTTAAG+GGG - chr2_1:2730833-2730852 None:intergenic 30.0%
CAGATTACAAAATGAACCAA+TGG - chr2_1:2730853-2730872 None:intergenic 30.0%
TGACATGATATTCAAGAACA+TGG + chr2_1:2731025-2731044 Msa0187910:intron 30.0%
AGACAAAAGGAAGAAAATCT+AGG - chr2_1:2731073-2731092 None:intergenic 30.0%
! GATTTTCTTCCTTTTGTCTA+CGG + chr2_1:2731074-2731093 Msa0187910:intron 30.0%
TCAGGTCAATTCAAATTTCA+AGG - chr2_1:2731106-2731125 None:intergenic 30.0%
TCTCAAAGACTGAAAATTTC+AGG - chr2_1:2731124-2731143 None:intergenic 30.0%
ATGTAGGTTTCGAAAATAGA+GGG - chr2_1:2731373-2731392 None:intergenic 30.0%
TATGTAGGTTTCGAAAATAG+AGG - chr2_1:2731374-2731393 None:intergenic 30.0%
! TCTGAGACTATTTGATAGTT+AGG - chr2_1:2731431-2731450 None:intergenic 30.0%
TCACTTACCAATCTGTTAAA+AGG + chr2_1:2731641-2731660 Msa0187910:intron 30.0%
!! TAAGGTACCTTTTAACAGAT+TGG - chr2_1:2731651-2731670 None:intergenic 30.0%
TAGAGCAACATTGATCAATA+AGG - chr2_1:2731669-2731688 None:intergenic 30.0%
TATAATTCTGTTGATATCCC+AGG + chr2_1:2731715-2731734 Msa0187910:intron 30.0%
AACTCAGATGCTTGTATATT+TGG + chr2_1:2731813-2731832 Msa0187910:intron 30.0%
!!! TTTTTGGACAAGTTTTGGTT+TGG - chr2_1:2732006-2732025 None:intergenic 30.0%
ACACATGCTCAAAATATAAC+TGG - chr2_1:2732057-2732076 None:intergenic 30.0%
ATCATAATTCATGCTGAGAT+AGG - chr2_1:2732112-2732131 None:intergenic 30.0%
! CACCTTTTCTTTGATTGTAT+GGG + chr2_1:2732133-2732152 Msa0187910:intron 30.0%
!!! TGTTGCAAAGTTTTAAACCA+TGG - chr2_1:2732186-2732205 None:intergenic 30.0%
AGAAGAGAAGTTTCCTTATT+TGG + chr2_1:2732210-2732229 Msa0187910:CDS 30.0%
TTCAATCCTGATGCAAAAAA+TGG - chr2_1:2732319-2732338 None:intergenic 30.0%
ATAGTGCAATTAACTGGTAA+AGG - chr2_1:2732349-2732368 None:intergenic 30.0%
!!! TTACTGTTTTTTGTGGATGT+AGG + chr2_1:2732415-2732434 Msa0187910:intron 30.0%
!! ATCTGTTTGGGATTTCTTTT+TGG + chr2_1:2732458-2732477 Msa0187910:CDS 30.0%
!! TTCTTTTTGGTGAGAAAAGT+AGG + chr2_1:2732471-2732490 Msa0187910:CDS 30.0%
!! TCTTTTTGGTGAGAAAAGTA+GGG + chr2_1:2732472-2732491 Msa0187910:CDS 30.0%
TTTACAGTCATTTCGAAAAG+TGG + chr2_1:2732724-2732743 Msa0187910:intron 30.0%
ACAGTTGGATCTTCTAATAT+TGG + chr2_1:2732753-2732772 Msa0187910:CDS 30.0%
! TAGCACAAACCTTTGAAAAT+AGG + chr2_1:2733061-2733080 Msa0187910:intron 30.0%
!! TTTCGTTTTTCTCATACAAG+AGG + chr2_1:2733170-2733189 Msa0187910:intron 30.0%
TACTTGTTCAATAACATGAC+TGG + chr2_1:2733209-2733228 Msa0187910:intron 30.0%
! AGTAACTTGACTTTTCTATC+GGG - chr2_1:2733338-2733357 None:intergenic 30.0%
CCATTACGCATTTATGATAA+TGG - chr2_1:2733476-2733495 None:intergenic 30.0%
CCATTATCATAAATGCGTAA+TGG + chr2_1:2733473-2733492 Msa0187910:intron 30.0%
ATTTGGTCATAAGTGTGTAA+TGG + chr2_1:2733506-2733525 Msa0187910:intron 30.0%
! GTGTGTAATGGAATATAGAA+AGG + chr2_1:2733518-2733537 Msa0187910:intron 30.0%
GGAATACAAGATCATAAATG+AGG + chr2_1:2733596-2733615 Msa0187910:intron 30.0%
!!! AGAAGCTTGTTTTTGGTTTA+GGG - chr2_1:2733695-2733714 None:intergenic 30.0%
!!! TAGAAGCTTGTTTTTGGTTT+AGG - chr2_1:2733696-2733715 None:intergenic 30.0%
CAAAATTGAAAACAAACCTG+TGG - chr2_1:2733878-2733897 None:intergenic 30.0%
ATGAGTCATTCCAATCAATA+GGG - chr2_1:2733998-2734017 None:intergenic 30.0%
!! ACAATGAGTTTTTGAAAGAG+TGG + chr2_1:2734037-2734056 Msa0187910:CDS 30.0%
ATTTACAAATGGATACCTTC+TGG - chr2_1:2734064-2734083 None:intergenic 30.0%
TATTTATCATTGTACTCCTC+TGG + chr2_1:2734165-2734184 Msa0187910:intron 30.0%
CACCTTACTATAAGTTTATG+GGG - chr2_1:2734287-2734306 None:intergenic 30.0%
CTCACCTTACTATAAGTTTA+TGG - chr2_1:2734289-2734308 None:intergenic 30.0%
CATAAACTTATAGTAAGGTG+AGG + chr2_1:2734287-2734306 Msa0187910:intron 30.0%
! AAAAAATGATGATTTGGGTC+AGG - chr2_1:2734321-2734340 None:intergenic 30.0%
GTACATAGAGAAGTAGAATA+TGG + chr2_1:2734353-2734372 Msa0187910:intron 30.0%
TATCAAGAAAAAACGAGACA+TGG - chr2_1:2734413-2734432 None:intergenic 30.0%
CAAAAAAAACATAAGACCAG+AGG - chr2_1:2734439-2734458 None:intergenic 30.0%
TTGTGTAGTGATTGACATTT+AGG + chr2_1:2734616-2734635 Msa0187910:intron 30.0%
TGTGTAGTGATTGACATTTA+GGG + chr2_1:2734617-2734636 Msa0187910:intron 30.0%
!! TGAAGTTGATAAAATTTGCG+GGG + chr2_1:2734800-2734819 Msa0187910:intron 30.0%
TTAGGAACCACAAAAATACT+GGG - chr2_1:2734861-2734880 None:intergenic 30.0%
!!! AAATAAGGGTATGCTGTTTT+AGG - chr2_1:2734912-2734931 None:intergenic 30.0%
GTATGGCTAAAGTACAAATA+AGG - chr2_1:2734927-2734946 None:intergenic 30.0%
! TGTATTATTTTCCTCTTGCA+GGG + chr2_1:2735101-2735120 Msa0187910:intron 30.0%
! GGGCATCTTTGAAAATATTA+AGG - chr2_1:2735183-2735202 None:intergenic 30.0%
ACTTGTGATATTATAGTGTG+AGG + chr2_1:2735272-2735291 Msa0187910:three_prime_UTR 30.0%
AAAAGATTCTTAGGATACAC+TGG - chr2_1:2735400-2735419 None:intergenic 30.0%
! TATCCTAAGAATCTTTTGCA+GGG + chr2_1:2735403-2735422 Msa0187910:three_prime_UTR 30.0%
TCTCTAATTAGGATATTGGT+GGG - chr2_1:2735442-2735461 None:intergenic 30.0%
ATCTCTAATTAGGATATTGG+TGG - chr2_1:2735443-2735462 None:intergenic 30.0%
ATGAGAAGAAAGAAGAAGGA+AGG - chr2_1:2729796-2729815 None:intergenic 35.0%
TTGATGAGACACAGTACATT+GGG - chr2_1:2729958-2729977 None:intergenic 35.0%
ATTGATGAGACACAGTACAT+TGG - chr2_1:2729959-2729978 None:intergenic 35.0%
! CTGTAATTAGGGTTTTTCTC+CGG - chr2_1:2730030-2730049 None:intergenic 35.0%
!! GAAAGAGAGTACCTGTAATT+AGG - chr2_1:2730042-2730061 None:intergenic 35.0%
! TTGATGTGATGTTCGTTTTG+TGG + chr2_1:2730108-2730127 Msa0187910:intron 35.0%
! TGTTCGTTTTGTGGATTTGT+AGG + chr2_1:2730117-2730136 Msa0187910:intron 35.0%
!! TTCGATGGTTTGTTCATCAT+CGG + chr2_1:2730234-2730253 Msa0187910:CDS 35.0%
! TAACTCACAGAATCGATTCT+TGG - chr2_1:2730263-2730282 None:intergenic 35.0%
TCCAACAAGTCAAAAGATGA+AGG + chr2_1:2730488-2730507 Msa0187910:intron 35.0%
!!! TCCTTCATCTTTTGACTTGT+TGG - chr2_1:2730492-2730511 None:intergenic 35.0%
CAGGATGAAATCATAAGAGT+TGG + chr2_1:2730523-2730542 Msa0187910:intron 35.0%
!! GCAGAGCATCTGATTTTTAA+GGG + chr2_1:2730552-2730571 Msa0187910:intron 35.0%
TTTCAGATGTATGCTGGTAA+AGG + chr2_1:2730583-2730602 Msa0187910:intron 35.0%
TATGCTGGTAAAGGTTTCTA+GGG + chr2_1:2730592-2730611 Msa0187910:intron 35.0%
ATGCCATGAAGAGAAAGAAA+AGG + chr2_1:2730616-2730635 Msa0187910:intron 35.0%
TGCCATGAAGAGAAAGAAAA+GGG + chr2_1:2730617-2730636 Msa0187910:intron 35.0%
!! TTTGTTAATTAGTGGTGGAC+TGG - chr2_1:2730753-2730772 None:intergenic 35.0%
CCTAAAATGAATTTCTTCCC+AGG - chr2_1:2730956-2730975 None:intergenic 35.0%
! CCTGGGAAGAAATTCATTTT+AGG + chr2_1:2730953-2730972 Msa0187910:intron 35.0%
GTGGGATCAATATCATTTGT+TGG - chr2_1:2731250-2731269 None:intergenic 35.0%
GATACTGCACATAATATCCT+GGG - chr2_1:2731735-2731754 None:intergenic 35.0%
! GTGCTTACTGCTTTAGATTT+GGG - chr2_1:2731942-2731961 None:intergenic 35.0%
! TGTGCTTACTGCTTTAGATT+TGG - chr2_1:2731943-2731962 None:intergenic 35.0%
!!! GGTTTGGCTTTTGTTTTTAC+TGG - chr2_1:2731990-2732009 None:intergenic 35.0%
! CATTGCAATCTATGGGTTAA+GGG - chr2_1:2732084-2732103 None:intergenic 35.0%
! ACATTGCAATCTATGGGTTA+AGG - chr2_1:2732085-2732104 None:intergenic 35.0%
! GCACCTTTTCTTTGATTGTA+TGG + chr2_1:2732132-2732151 Msa0187910:intron 35.0%
AGCCCATACAATCAAAGAAA+AGG - chr2_1:2732138-2732157 None:intergenic 35.0%
! ATTCAACTACTTGAGAGCAT+AGG - chr2_1:2732163-2732182 None:intergenic 35.0%
!! CGTTGTTTCTGAACCAAATA+AGG - chr2_1:2732226-2732245 None:intergenic 35.0%
!!! AATCAGCCATTTTTTGCATC+AGG + chr2_1:2732310-2732329 Msa0187910:CDS 35.0%
! TGCTTTACTCCTTTTATACG+AGG + chr2_1:2732389-2732408 Msa0187910:intron 35.0%
CAGTAAAGTCCTCGTATAAA+AGG - chr2_1:2732401-2732420 None:intergenic 35.0%
!!! GAGGACTTTACTGTTTTTTG+TGG + chr2_1:2732408-2732427 Msa0187910:intron 35.0%
! ATTTGAAATACCTTCGTGCT+TGG + chr2_1:2732548-2732567 Msa0187910:intron 35.0%
!! TTCTCAGCATGCTTTATTTC+TGG + chr2_1:2732863-2732882 Msa0187910:intron 35.0%
CTTAATGTCACTCTCTCTTA+AGG + chr2_1:2732910-2732929 Msa0187910:intron 35.0%
GTTGAATCAAATCTAGCTGT+AGG - chr2_1:2732991-2733010 None:intergenic 35.0%
AAGAGACACTATAGTCTATC+AGG - chr2_1:2733124-2733143 None:intergenic 35.0%
TTCAATAACATGACTGGAGA+AGG + chr2_1:2733215-2733234 Msa0187910:intron 35.0%
CACACTGAGTAATCATCTAA+TGG - chr2_1:2733241-2733260 None:intergenic 35.0%
! TAACTTGACTTTTCTATCGG+GGG - chr2_1:2733336-2733355 None:intergenic 35.0%
! GTAACTTGACTTTTCTATCG+GGG - chr2_1:2733337-2733356 None:intergenic 35.0%
!!! TTTTTTGTGTCACTACAGAC+TGG + chr2_1:2733827-2733846 Msa0187910:intron 35.0%
AAACCTGTGGAAAACAAAGA+TGG - chr2_1:2733865-2733884 None:intergenic 35.0%
TGAATGTTACACTATCTCAC+TGG + chr2_1:2733903-2733922 Msa0187910:intron 35.0%
AGACTCTTGAAATTGTGAAG+AGG + chr2_1:2733956-2733975 Msa0187910:intron 35.0%
CATGAGTCATTCCAATCAAT+AGG - chr2_1:2733999-2734018 None:intergenic 35.0%
TCAAAAACTCATTGTCCTTG+TGG - chr2_1:2734032-2734051 None:intergenic 35.0%
CATGCTACTATCAGATTGTT+GGG - chr2_1:2734130-2734149 None:intergenic 35.0%
TCATGCTACTATCAGATTGT+TGG - chr2_1:2734131-2734150 None:intergenic 35.0%
ACTCTTCTATGAATGTGCTT+AGG + chr2_1:2734220-2734239 Msa0187910:intron 35.0%
CTCTTCTATGAATGTGCTTA+GGG + chr2_1:2734221-2734240 Msa0187910:intron 35.0%
GTCCCCATAAACTTATAGTA+AGG + chr2_1:2734282-2734301 Msa0187910:intron 35.0%
!!! TTTTTTCTTGATACTCCCTC+TGG + chr2_1:2734420-2734439 Msa0187910:intron 35.0%
ATTTATGGTGTGTTTGCATG+TGG + chr2_1:2734537-2734556 Msa0187910:intron 35.0%
TGTGGAGATAAATAGTGAGT+AGG + chr2_1:2734555-2734574 Msa0187910:intron 35.0%
ATAGTGAGTAGGTATGAAGT+TGG + chr2_1:2734566-2734585 Msa0187910:intron 35.0%
TAGTGAGTAGGTATGAAGTT+GGG + chr2_1:2734567-2734586 Msa0187910:intron 35.0%
! ATTTAGGGTGTGTTTGTATG+TGG + chr2_1:2734632-2734651 Msa0187910:intron 35.0%
TGTGGAGATAAATAGTGAGT+AGG + chr2_1:2734555-2734574 Msa0187910:intron 35.0%
ATAGTGAGTAGGTATGAAGT+TGG + chr2_1:2734566-2734585 Msa0187910:intron 35.0%
TAGTGAGTAGGTATGAAGTT+GGG + chr2_1:2734567-2734586 Msa0187910:intron 35.0%
GTTAGGAACCACAAAAATAC+TGG - chr2_1:2734862-2734881 None:intergenic 35.0%
TATGGCCAAGGTACAAATAA+GGG - chr2_1:2734949-2734968 None:intergenic 35.0%
TTATGGCCAAGGTACAAATA+AGG - chr2_1:2734950-2734969 None:intergenic 35.0%
ATCACTACTGATCATGAGAA+GGG - chr2_1:2735041-2735060 None:intergenic 35.0%
! CTGTATTATTTTCCTCTTGC+AGG + chr2_1:2735100-2735119 Msa0187910:intron 35.0%
!! CTAGGTTTGCTTTAGAAACT+GGG - chr2_1:2735203-2735222 None:intergenic 35.0%
! GTATCCTAAGAATCTTTTGC+AGG + chr2_1:2735402-2735421 Msa0187910:three_prime_UTR 35.0%
TCTAATTAGGATATTGGTGG+GGG - chr2_1:2735440-2735459 None:intergenic 35.0%
CTCTAATTAGGATATTGGTG+GGG - chr2_1:2735441-2735460 None:intergenic 35.0%
AGAAGAAAGAAGAAGGAAGG+TGG - chr2_1:2729793-2729812 None:intergenic 40.0%
TCTTTCTCTCTCATCTCTTC+TGG + chr2_1:2729830-2729849 Msa0187910:five_prime_UTR 40.0%
TCTCATCTCTTCTGGATCTA+CGG + chr2_1:2729838-2729857 Msa0187910:five_prime_UTR 40.0%
! AATTAGGGTTTTTCTCCGGT+GGG - chr2_1:2730026-2730045 None:intergenic 40.0%
! TAATTAGGGTTTTTCTCCGG+TGG - chr2_1:2730027-2730046 None:intergenic 40.0%
CGGAGAAAAACCCTAATTAC+AGG + chr2_1:2730028-2730047 Msa0187910:CDS 40.0%
ATTGATTATTGTGGAAGCGG+TGG + chr2_1:2730158-2730177 Msa0187910:CDS 40.0%
TTGATGTTGGCAAGACGTTT+AGG + chr2_1:2730201-2730220 Msa0187910:CDS 40.0%
TGATGTTGGCAAGACGTTTA+GGG + chr2_1:2730202-2730221 Msa0187910:CDS 40.0%
! ATGAAGGATTATTAACGGGC+AGG + chr2_1:2730504-2730523 Msa0187910:intron 40.0%
!! CGCAGAGCATCTGATTTTTA+AGG + chr2_1:2730551-2730570 Msa0187910:intron 40.0%
GTATGCTGGTAAAGGTTTCT+AGG + chr2_1:2730591-2730610 Msa0187910:intron 40.0%
!! AATTTTAAGGGGTTCTGCTC+TGG - chr2_1:2730822-2730841 None:intergenic 40.0%
AGGAACATACCGTAGACAAA+AGG - chr2_1:2731086-2731105 None:intergenic 40.0%
!! TATCCATTGAATGCTGACTC+AGG - chr2_1:2731282-2731301 None:intergenic 40.0%
TGAGTCAGCATTCAATGGAT+AGG + chr2_1:2731281-2731300 Msa0187910:CDS 40.0%
CGATACTGCACATAATATCC+TGG - chr2_1:2731736-2731755 None:intergenic 40.0%
AGCATCTGAGTTCAGTGATT+GGG - chr2_1:2731805-2731824 None:intergenic 40.0%
AAGCATCTGAGTTCAGTGAT+TGG - chr2_1:2731806-2731825 None:intergenic 40.0%
! ACTGCTTTAGATTTGGGACT+TGG - chr2_1:2731936-2731955 None:intergenic 40.0%
GGAGTCACATTGCAATCTAT+GGG - chr2_1:2732091-2732110 None:intergenic 40.0%
AGGAGTCACATTGCAATCTA+TGG - chr2_1:2732092-2732111 None:intergenic 40.0%
CTCTCAAGTAGTTGAATCCA+TGG + chr2_1:2732166-2732185 Msa0187910:intron 40.0%
! TTTGGTTCAGAAACAACGCA+AGG + chr2_1:2732228-2732247 Msa0187910:CDS 40.0%
AGGAAGGACAAGAAATACGA+AGG + chr2_1:2732248-2732267 Msa0187910:CDS 40.0%
GGAAGGACAAGAAATACGAA+GGG + chr2_1:2732249-2732268 Msa0187910:CDS 40.0%
! GTCATCAGTGATAATGTTCC+AGG - chr2_1:2732287-2732306 None:intergenic 40.0%
TTGTGGATGTAGGTAATGCA+TGG + chr2_1:2732425-2732444 Msa0187910:intron 40.0%
TGGAGAGGATTACATCTGTT+TGG + chr2_1:2732445-2732464 Msa0187910:CDS 40.0%
GGAGAGGATTACATCTGTTT+GGG + chr2_1:2732446-2732465 Msa0187910:CDS 40.0%
! TTTTGGTGAGAAAAGTAGGG+TGG + chr2_1:2732475-2732494 Msa0187910:CDS 40.0%
ATACCATATTCTGTACTCGC+GGG - chr2_1:2732527-2732546 None:intergenic 40.0%
CATACCATATTCTGTACTCG+CGG - chr2_1:2732528-2732547 None:intergenic 40.0%
ATACATATGTCCAAGCACGA+AGG - chr2_1:2732561-2732580 None:intergenic 40.0%
TCAGTTCCATCTCCCAAAAT+TGG + chr2_1:2732585-2732604 Msa0187910:intron 40.0%
! CACACTCGTAGTCCAATTTT+GGG - chr2_1:2732600-2732619 None:intergenic 40.0%
AATGTCACTCTCTCTTAAGG+AGG + chr2_1:2732913-2732932 Msa0187910:intron 40.0%
ATGTCACTCTCTCTTAAGGA+GGG + chr2_1:2732914-2732933 Msa0187910:intron 40.0%
TAAACTGCTTCTTACTTCCC+TGG + chr2_1:2732960-2732979 Msa0187910:intron 40.0%
! AACTTGACTTTTCTATCGGG+GGG - chr2_1:2733335-2733354 None:intergenic 40.0%
TAAATGAGGAGCAAGAGACA+AGG + chr2_1:2733610-2733629 Msa0187910:intron 40.0%
AAGAGACAAGGATATTGCAG+AGG + chr2_1:2733622-2733641 Msa0187910:intron 40.0%
!!! TGTCCATCTTTGTTTTCCAC+AGG + chr2_1:2733859-2733878 Msa0187910:CDS 40.0%
ATGTTACACTATCTCACTGG+TGG + chr2_1:2733906-2733925 Msa0187910:intron 40.0%
! CCAATCAATAGGGTTTGCTT+TGG - chr2_1:2733988-2734007 None:intergenic 40.0%
CCAAAGCAAACCCTATTGAT+TGG + chr2_1:2733985-2734004 Msa0187910:CDS 40.0%
TCATGAGTTTGATCACCACA+AGG + chr2_1:2734014-2734033 Msa0187910:CDS 40.0%
!! TTTTGAAAGAGTGGTCCAGA+AGG + chr2_1:2734046-2734065 Msa0187910:CDS 40.0%
TCTATGAATGTGCTTAGGGA+AGG + chr2_1:2734225-2734244 Msa0187910:intron 40.0%
! AATGATGATTTGGGTCAGGA+GGG - chr2_1:2734317-2734336 None:intergenic 40.0%
! AAATGATGATTTGGGTCAGG+AGG - chr2_1:2734318-2734337 None:intergenic 40.0%
!! TTGGTTAGTGGAAAAGCACT+TGG + chr2_1:2734752-2734771 Msa0187910:intron 40.0%
!! TGGTTAGTGGAAAAGCACTT+GGG + chr2_1:2734753-2734772 Msa0187910:intron 40.0%
!! AGTTGATAAAATTTGCGGGG+TGG + chr2_1:2734803-2734822 Msa0187910:intron 40.0%
AAGTGACACTACACTTTCAC+TGG + chr2_1:2734835-2734854 Msa0187910:intron 40.0%
!!! TAAGGGTATGCTGTTTTAGG+AGG - chr2_1:2734909-2734928 None:intergenic 40.0%
CCAAGGTACAAATAAGGGTA+TGG - chr2_1:2734944-2734963 None:intergenic 40.0%
! CCATACCCTTATTTGTACCT+TGG + chr2_1:2734941-2734960 Msa0187910:intron 40.0%
TCACTACTGATCATGAGAAG+GGG - chr2_1:2735040-2735059 None:intergenic 40.0%
GATCACTACTGATCATGAGA+AGG - chr2_1:2735042-2735061 None:intergenic 40.0%
!! CCTAGGTTTGCTTTAGAAAC+TGG - chr2_1:2735204-2735223 None:intergenic 40.0%
!! CCAGTTTCTAAAGCAAACCT+AGG + chr2_1:2735201-2735220 Msa0187910:three_prime_UTR 40.0%
TGACCCTGCAAAAGATTCTT+AGG - chr2_1:2735409-2735428 None:intergenic 40.0%
CTAATTAGGATATTGGTGGG+GGG - chr2_1:2735439-2735458 None:intergenic 40.0%
!! AAGATCAACGCCGATTCAGA+GGG - chr2_1:2729907-2729926 None:intergenic 45.0%
!! AAAGATCAACGCCGATTCAG+AGG - chr2_1:2729908-2729927 None:intergenic 45.0%
!! GAATCGGCGTTGATCTTTCT+CGG + chr2_1:2729910-2729929 Msa0187910:CDS 45.0%
AAAATCAGATGCTCTGCGAC+AGG - chr2_1:2730549-2730568 None:intergenic 45.0%
! GGCCCTTTTCTTTCTCTTCA+TGG - chr2_1:2730622-2730641 None:intergenic 45.0%
GAAGAGAAAGAAAAGGGCCA+TGG + chr2_1:2730623-2730642 Msa0187910:intron 45.0%
!! GTTAATTAGTGGTGGACTGG+TGG - chr2_1:2730750-2730769 None:intergenic 45.0%
TGAATTTCTTCCCAGGAGCT+GGG - chr2_1:2730949-2730968 None:intergenic 45.0%
ATGAATTTCTTCCCAGGAGC+TGG - chr2_1:2730950-2730969 None:intergenic 45.0%
CTCGTACATCATCCAATCCA+AGG - chr2_1:2731210-2731229 None:intergenic 45.0%
!! AATGCTGACTCAGGTAGATG+GGG - chr2_1:2731273-2731292 None:intergenic 45.0%
!! GAATGCTGACTCAGGTAGAT+GGG - chr2_1:2731274-2731293 None:intergenic 45.0%
!! TGAATGCTGACTCAGGTAGA+TGG - chr2_1:2731275-2731294 None:intergenic 45.0%
CTACCTGAGTCAGCATTCAA+TGG + chr2_1:2731276-2731295 Msa0187910:CDS 45.0%
AAACACACAACGGTCACTAG+AGG - chr2_1:2731309-2731328 None:intergenic 45.0%
! CAGTGATTGGGAAGTACACA+CGG - chr2_1:2731793-2731812 None:intergenic 45.0%
GTTCAGAAACAACGCAAGGA+AGG + chr2_1:2732232-2732251 Msa0187910:CDS 45.0%
AATACGAAGGGTTGCTCAGA+TGG + chr2_1:2732261-2732280 Msa0187910:CDS 45.0%
GATGTAGGTAATGCATGGAG+AGG + chr2_1:2732430-2732449 Msa0187910:intron 45.0%
ATTCCCGCGAGTACAGAATA+TGG + chr2_1:2732521-2732540 Msa0187910:CDS 45.0%
!! CGTAGTCCAATTTTGGGAGA+TGG - chr2_1:2732594-2732613 None:intergenic 45.0%
! GCACACTCGTAGTCCAATTT+TGG - chr2_1:2732601-2732620 None:intergenic 45.0%
GTCATTTCGAAAAGTGGAGC+TGG + chr2_1:2732730-2732749 Msa0187910:intron 45.0%
TGTCACTCTCTCTTAAGGAG+GGG + chr2_1:2732915-2732934 Msa0187910:intron 45.0%
TCTAGCTGTAGGAAACACCA+GGG - chr2_1:2732980-2732999 None:intergenic 45.0%
ATCTAGCTGTAGGAAACACC+AGG - chr2_1:2732981-2733000 None:intergenic 45.0%
! ACTTGACTTTTCTATCGGGG+GGG - chr2_1:2733334-2733353 None:intergenic 45.0%
TGTGCTTAGGGAAGGAATTC+CGG + chr2_1:2734233-2734252 Msa0187910:intron 45.0%
GGATCCCTCATTCTAATCAG+CGG + chr2_1:2734374-2734393 Msa0187910:intron 45.0%
! CATGCCGCTGATTAGAATGA+GGG - chr2_1:2734381-2734400 None:intergenic 45.0%
GGGTGAGTAGAAAACTGAGT+AGG + chr2_1:2734682-2734701 Msa0187910:intron 45.0%
!! TCACTGGCCCAGTATTTTTG+TGG + chr2_1:2734851-2734870 Msa0187910:intron 45.0%
GCTCATGATGATTATGGCCA+AGG - chr2_1:2734961-2734980 None:intergenic 45.0%
!! CAGCAAAACTGTTGGTTCCT+AGG - chr2_1:2735221-2735240 None:intergenic 45.0%
! CTAGGAACCAACAGTTTTGC+TGG + chr2_1:2735219-2735238 Msa0187910:three_prime_UTR 45.0%
! GAACCAACAGTTTTGCTGGA+AGG + chr2_1:2735223-2735242 Msa0187910:three_prime_UTR 45.0%
!! TAAAAATATACATTATTATT+AGG + chr2_1:2730447-2730466 Msa0187910:intron 5.0%
! GCGTTGATCTTTCTCGGAAC+AGG + chr2_1:2729916-2729935 Msa0187910:CDS 50.0%
CGGAACAGGCTGTTCAAGTA+TGG + chr2_1:2729930-2729949 Msa0187910:CDS 50.0%
ACGGAACAAGGAGGATCAGA+GGG - chr2_1:2729982-2730001 None:intergenic 50.0%
AACGGAACAAGGAGGATCAG+AGG - chr2_1:2729983-2730002 None:intergenic 50.0%
CGACAATGACTGAGCGCAAA+CGG - chr2_1:2730001-2730020 None:intergenic 50.0%
TCAGTCATTGTCGATCCCAC+CGG + chr2_1:2730008-2730027 Msa0187910:CDS 50.0%
TTAGGGAGACTGTGCTTCGA+TGG + chr2_1:2730219-2730238 Msa0187910:CDS 50.0%
GAACATGCTGATGCAGTCCT+TGG + chr2_1:2731190-2731209 Msa0187910:CDS 50.0%
TGCTGATGCAGTCCTTGGAT+TGG + chr2_1:2731195-2731214 Msa0187910:CDS 50.0%
!! ATGCTGACTCAGGTAGATGG+GGG - chr2_1:2731272-2731291 None:intergenic 50.0%
GAAAAGTGGAGCTGGACAGT+TGG + chr2_1:2732738-2732757 Msa0187910:CDS 50.0%
TGCAGAGGACTCTAACCTTC+TGG + chr2_1:2733637-2733656 Msa0187910:intron 50.0%
!! GGACTCTAACCTTCTGGTTC+CGG + chr2_1:2733643-2733662 Msa0187910:intron 50.0%
CCATCATGAGAAAGCTGCAC+CGG - chr2_1:2734255-2734274 None:intergenic 50.0%
! GCATGCCGCTGATTAGAATG+AGG - chr2_1:2734382-2734401 None:intergenic 50.0%
CTACTGATCATGAGAAGGGG+AGG - chr2_1:2735037-2735056 None:intergenic 50.0%
CACATGCTTTACCCTGCAAG+AGG - chr2_1:2735115-2735134 None:intergenic 50.0%
! CCAACAGTTTTGCTGGAAGG+CGG + chr2_1:2735226-2735245 Msa0187910:three_prime_UTR 50.0%
CGGAACTCCTCCCTCTGAAT+CGG + chr2_1:2729894-2729913 Msa0187910:CDS 55.0%
!! ATCAACGCCGATTCAGAGGG+AGG - chr2_1:2729904-2729923 None:intergenic 55.0%
TGAGCGCAAACGGAACAAGG+AGG - chr2_1:2729991-2730010 None:intergenic 55.0%
GACTGAGCGCAAACGGAACA+AGG - chr2_1:2729994-2730013 None:intergenic 55.0%
GGCGCTGTTCTGTTCTGTAC+AGG + chr2_1:2730880-2730899 Msa0187910:intron 55.0%
TCTTACATCCTCCCAGCTCC+TGG + chr2_1:2730935-2730954 Msa0187910:intron 55.0%
CTTACATCCTCCCAGCTCCT+GGG + chr2_1:2730936-2730955 Msa0187910:intron 55.0%
ATTTCTTCCCAGGAGCTGGG+AGG - chr2_1:2730946-2730965 None:intergenic 55.0%
TGACTCAGGTAGATGGGGGT+GGG - chr2_1:2731268-2731287 None:intergenic 55.0%
CTCGAACATCCGGAACCAGA+AGG - chr2_1:2733655-2733674 None:intergenic 55.0%
!! CTTCTGGTTCCGGATGTTCG+AGG + chr2_1:2733653-2733672 Msa0187910:intron 55.0%
CCGGTGCAGCTTTCTCATGA+TGG + chr2_1:2734252-2734271 Msa0187910:intron 55.0%
CCGCCTTCCAGCAAAACTGT+TGG - chr2_1:2735229-2735248 None:intergenic 55.0%
GACGCCATGGCCACATCCAA+CGG + chr2_1:2729862-2729881 Msa0187910:exon 60.0%
!! ACATCCAACGGCACCGACGA+CGG + chr2_1:2729874-2729893 Msa0187910:CDS 60.0%
AGAGGGAGGAGTTCCGTCGT+CGG - chr2_1:2729890-2729909 None:intergenic 60.0%
CGTGGGACTCGCGTGTCAAA+AGG - chr2_1:2730385-2730404 None:intergenic 60.0%
CTGACTCAGGTAGATGGGGG+TGG - chr2_1:2731269-2731288 None:intergenic 60.0%
! GGGAAGTACACACGGCACAG+TGG - chr2_1:2731785-2731804 None:intergenic 60.0%
GAAGGGTTGCTCAGATGGCC+TGG + chr2_1:2732266-2732285 Msa0187910:CDS 60.0%
TCCGGATGTTCGAGGAACGC+AGG + chr2_1:2733661-2733680 Msa0187910:intron 60.0%
GCCTGCGTTCCTCGAACATC+CGG - chr2_1:2733665-2733684 None:intergenic 60.0%
CTGGATCTACGGCGACGCCA+TGG + chr2_1:2729849-2729868 Msa0187910:exon 65.0%
!! GGTGCCGTTGGATGTGGCCA+TGG - chr2_1:2729869-2729888 None:intergenic 65.0%
!! GTCGTCGGTGCCGTTGGATG+TGG - chr2_1:2729875-2729894 None:intergenic 65.0%
!! AGTTCCGTCGTCGGTGCCGT+TGG - chr2_1:2729881-2729900 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 2729744 2735581 2729744 ID=Msa0187910;Name=Msa0187910
chr2_1 mRNA 2729744 2735581 2729744 ID=Msa0187910-mRNA-1;Parent=Msa0187910;Name=Msa0187910-mRNA-1;_AED=0.25;_eAED=0.25;_QI=124|0.87|1|1|0.87|0.88|9|423|313
chr2_1 exon 2729744 2730049 2729744 ID=Msa0187910-mRNA-1:exon:1244;Parent=Msa0187910-mRNA-1
chr2_1 exon 2730139 2730274 2730139 ID=Msa0187910-mRNA-1:exon:1245;Parent=Msa0187910-mRNA-1
chr2_1 exon 2731175 2731302 2731175 ID=Msa0187910-mRNA-1:exon:1246;Parent=Msa0187910-mRNA-1
chr2_1 exon 2732207 2732354 2732207 ID=Msa0187910-mRNA-1:exon:1247;Parent=Msa0187910-mRNA-1
chr2_1 exon 2732437 2732542 2732437 ID=Msa0187910-mRNA-1:exon:1248;Parent=Msa0187910-mRNA-1
chr2_1 exon 2732731 2732789 2732731 ID=Msa0187910-mRNA-1:exon:1249;Parent=Msa0187910-mRNA-1
chr2_1 exon 2733845 2733880 2733845 ID=Msa0187910-mRNA-1:exon:1250;Parent=Msa0187910-mRNA-1
chr2_1 exon 2733958 2734067 2733958 ID=Msa0187910-mRNA-1:exon:1251;Parent=Msa0187910-mRNA-1
chr2_1 exon 2735122 2735581 2735122 ID=Msa0187910-mRNA-1:exon:1252;Parent=Msa0187910-mRNA-1
chr2_1 five_prime_UTR 2729744 2729867 2729744 ID=Msa0187910-mRNA-1:five_prime_utr;Parent=Msa0187910-mRNA-1
chr2_1 CDS 2729868 2730049 2729868 ID=Msa0187910-mRNA-1:cds;Parent=Msa0187910-mRNA-1
chr2_1 CDS 2730139 2730274 2730139 ID=Msa0187910-mRNA-1:cds;Parent=Msa0187910-mRNA-1
chr2_1 CDS 2731175 2731302 2731175 ID=Msa0187910-mRNA-1:cds;Parent=Msa0187910-mRNA-1
chr2_1 CDS 2732207 2732354 2732207 ID=Msa0187910-mRNA-1:cds;Parent=Msa0187910-mRNA-1
chr2_1 CDS 2732437 2732542 2732437 ID=Msa0187910-mRNA-1:cds;Parent=Msa0187910-mRNA-1
chr2_1 CDS 2732731 2732789 2732731 ID=Msa0187910-mRNA-1:cds;Parent=Msa0187910-mRNA-1
chr2_1 CDS 2733845 2733880 2733845 ID=Msa0187910-mRNA-1:cds;Parent=Msa0187910-mRNA-1
chr2_1 CDS 2733958 2734067 2733958 ID=Msa0187910-mRNA-1:cds;Parent=Msa0187910-mRNA-1
chr2_1 CDS 2735122 2735158 2735122 ID=Msa0187910-mRNA-1:cds;Parent=Msa0187910-mRNA-1
chr2_1 three_prime_UTR 2735159 2735581 2735159 ID=Msa0187910-mRNA-1:three_prime_utr;Parent=Msa0187910-mRNA-1
Gene Sequence

>Msa0187910

ATGGCCACATCCAACGGCACCGACGACGGAACTCCTCCCTCTGAATCGGCGTTGATCTTTCTCGGAACAGGCTGTTCAAGTATGGTTCCCAATGTACTGTGTCTCATCAATCCCTCTGATCCTCCTTGTTCCGTTTGCGCTCAGTCATTGTCGATCCCACCGGAGAAAAACCCTAATTACAGGTGTAATACTTCGATGTTAATTGATTATTGTGGAAGCGGTGGTAATCATAATTATATATTGATTGATGTTGGCAAGACGTTTAGGGAGACTGTGCTTCGATGGTTTGTTCATCATCGGATTCCAAGAATCGATTCTATTATTTTGACTCATGAACATGCTGATGCAGTCCTTGGATTGGATGATGTACGAGCTGTGCAGCCTTTTAGTCCAACAAATGATATTGATCCCACCCCCATCTACCTGAGTCAGCATTCAATGGATAGCATAGAAGAGAAGTTTCCTTATTTGGTTCAGAAACAACGCAAGGAAGGACAAGAAATACGAAGGGTTGCTCAGATGGCCTGGAACATTATCACTGATGACTGCAATCAGCCATTTTTTGCATCAGGATTGAAATTCACTCCTTTACCAGTAATGCATGGAGAGGATTACATCTGTTTGGGATTTCTTTTTGGTGAGAAAAGTAGGGTGGCTTATATATCTGATGTTTCACGGATTCCCGCGAGTACAGAATATGTCATTTCGAAAAGTGGAGCTGGACAGTTGGATCTTCTAATATTGGATTCATTATATAGGACTGGATCGCATAATGTCCATCTTTGTTTTCCACAGACTCTTGAAATTGTGAAGAGGTTGTGTCCAAAGCAAACCCTATTGATTGGAATGACTCATGAGTTTGATCACCACAAGGACAATGAGTTTTTGAAAGAGTGGTCCAGAAGGGTAAAGCATGTGACAATCTATACCATATACAGTTGA

Protein sequence

>Msa0187910

MATSNGTDDGTPPSESALIFLGTGCSSMVPNVLCLINPSDPPCSVCAQSLSIPPEKNPNYRCNTSMLIDYCGSGGNHNYILIDVGKTFRETVLRWFVHHRIPRIDSIILTHEHADAVLGLDDVRAVQPFSPTNDIDPTPIYLSQHSMDSIEEKFPYLVQKQRKEGQEIRRVAQMAWNIITDDCNQPFFASGLKFTPLPVMHGEDYICLGFLFGEKSRVAYISDVSRIPASTEYVISKSGAGQLDLLILDSLYRTGSHNVHLCFPQTLEIVKRLCPKQTLLIGMTHEFDHHKDNEFLKEWSRRVKHVTIYTIYS*