Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1448710 | sp|O74545|YCV6_SCHPO | 35.526 | 304 | 150 | 14 | 16 | 300 | 6 | 282 | 1.40e-42 | 151 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1448710 | G7IP30 | 99.338 | 302 | 2 | 0 | 1 | 302 | 1 | 302 | 0.0 | 629 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0617560 | Msa1448710 | 0.803435 | 3.490483e-49 | -8.615850e-47 |
| Msa0187910 | Msa1448710 | 0.896553 | 3.302477e-76 | -8.615850e-47 |
| Msa0194520 | Msa1448710 | 0.896313 | 4.159953e-76 | -8.615850e-47 |
| Msa0244760 | Msa1448710 | 0.872794 | 2.419076e-67 | -8.615850e-47 |
| Msa0268150 | Msa1448710 | 0.932536 | 7.351126e-95 | -8.615850e-47 |
| Msa0299010 | Msa1448710 | 0.989813 | 9.204560e-180 | -8.615850e-47 |
| Msa0927840 | Msa1448710 | 0.804273 | 2.338283e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1448710 | MtrunA17_Chr2g0285411 | 99.338 | 302 | 2 | 0 | 1 | 302 | 1 | 302 | 0.0 | 629 |
| Msa1448710 | MtrunA17_Chr8g0342441 | 40.351 | 285 | 146 | 10 | 15 | 298 | 58 | 319 | 3.87e-57 | 187 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1448710 | AT1G30300.1 | 75.410 | 305 | 72 | 1 | 1 | 302 | 2 | 306 | 4.68e-178 | 495 |
| Msa1448710 | AT1G30300.3 | 75.410 | 305 | 72 | 1 | 1 | 302 | 2 | 306 | 4.68e-178 | 495 |
| Msa1448710 | AT1G30300.2 | 75.410 | 305 | 72 | 1 | 1 | 302 | 2 | 306 | 4.68e-178 | 495 |
| Msa1448710 | AT1G30300.4 | 75.410 | 305 | 72 | 1 | 1 | 302 | 2 | 306 | 4.68e-178 | 495 |
| Msa1448710 | AT4G03610.4 | 64.821 | 307 | 96 | 5 | 1 | 302 | 1 | 300 | 4.31e-142 | 404 |
| Msa1448710 | AT4G03610.2 | 64.111 | 287 | 91 | 5 | 1 | 282 | 1 | 280 | 9.65e-130 | 372 |
| Msa1448710 | AT4G03610.1 | 61.564 | 307 | 91 | 6 | 1 | 302 | 1 | 285 | 6.42e-129 | 370 |
| Msa1448710 | AT4G03610.3 | 66.008 | 253 | 76 | 4 | 1 | 250 | 1 | 246 | 6.28e-117 | 337 |
| Msa1448710 | AT3G13800.1 | 40.493 | 284 | 146 | 10 | 16 | 298 | 78 | 339 | 3.92e-53 | 178 |
| Msa1448710 | AT3G13800.4 | 40.493 | 284 | 146 | 10 | 16 | 298 | 78 | 339 | 3.92e-53 | 178 |
| Msa1448710 | AT3G13800.3 | 40.502 | 279 | 143 | 10 | 21 | 298 | 1 | 257 | 9.20e-52 | 172 |
| Msa1448710 | AT3G13800.2 | 40.502 | 279 | 143 | 10 | 21 | 298 | 1 | 257 | 9.20e-52 | 172 |
Find 101 sgRNAs with CRISPR-Local
Find 386 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAGAGAAGTTTCCTTATT+TGG | 0.135750 | tig0032298:-24141 | Msa1448710:CDS |
| GAAAGAGAGTACCTGTAATT+AGG | 0.152242 | tig0032298:+26312 | None:intergenic |
| TCTTTCTCTCTCATCTCTTC+TGG | 0.177721 | tig0032298:-26521 | Msa1448710:five_prime_UTR |
| CGTTGTTTCTGAACCAAATA+AGG | 0.179452 | tig0032298:+24128 | None:intergenic |
| ATATCATTTGTTGGACTAAA+AGG | 0.183530 | tig0032298:+25113 | None:intergenic |
| ACAGTTGGATCTTCTAATAT+TGG | 0.247221 | tig0032298:-23598 | Msa1448710:CDS |
| GGGCATCTTTGAAAATATTA+AGG | 0.254973 | tig0032298:+21170 | None:intergenic |
| CCTAGGTTTGCTTTAGAAAC+TGG | 0.258915 | tig0032298:+21149 | None:intergenic |
| TAATATTGGATTCATTATAT+AGG | 0.272370 | tig0032298:-23584 | Msa1448710:CDS |
| AAAAGATTACATCTCTAATT+AGG | 0.275025 | tig0032298:+20900 | None:intergenic |
| TACATCTCTAATTAGGATAT+TGG | 0.285182 | tig0032298:+20907 | None:intergenic |
| TTGATGTTGGCAAGACGTTT+AGG | 0.306067 | tig0032298:-26150 | Msa1448710:CDS |
| TTGATCTTATTTAGATTCAT+TGG | 0.307127 | tig0032298:-21195 | Msa1448710:exon |
| TAAATAAGATCAACTGTATA+TGG | 0.310412 | tig0032298:+21205 | None:intergenic |
| TGACCCTGCAAAAGATTCTT+AGG | 0.311116 | tig0032298:+20944 | None:intergenic |
| TAACTCACAGAATCGATTCT+TGG | 0.317245 | tig0032298:+26091 | None:intergenic |
| AATATTGGATTCATTATATA+GGG | 0.318957 | tig0032298:-23583 | Msa1448710:intron |
| CAGCAAAACTGTTGGTTCCT+AGG | 0.324849 | tig0032298:+21132 | None:intergenic |
| AAAGAGAGTACCTGTAATTA+GGG | 0.331055 | tig0032298:+26313 | None:intergenic |
| CGGAACAGGCTGTTCAAGTA+TGG | 0.338495 | tig0032298:-26421 | Msa1448710:CDS |
| TGAATGCTGACTCAGGTAGA+TGG | 0.349627 | tig0032298:+25079 | None:intergenic |
| TGGAGAGGATTACATCTGTT+TGG | 0.350777 | tig0032298:-23906 | Msa1448710:CDS |
| TGATGTTGGCAAGACGTTTA+GGG | 0.356782 | tig0032298:-26149 | Msa1448710:CDS |
| CATGAGTCATTCCAATCAAT+AGG | 0.362542 | tig0032298:+22355 | None:intergenic |
| GGAGAGGATTACATCTGTTT+GGG | 0.373515 | tig0032298:-23905 | Msa1448710:CDS |
| GTCATCAGTGATAATGTTCC+AGG | 0.377002 | tig0032298:+24067 | None:intergenic |
| GCGTTGATCTTTCTCGGAAC+AGG | 0.380171 | tig0032298:-26435 | Msa1448710:CDS |
| TTTACAGTCATTTCGAAAAG+TGG | 0.389227 | tig0032298:-23627 | Msa1448710:intron |
| GAATCGGCGTTGATCTTTCT+CGG | 0.402893 | tig0032298:-26441 | Msa1448710:CDS |
| CCAATCAATAGGGTTTGCTT+TGG | 0.405132 | tig0032298:+22366 | None:intergenic |
| CGACAATGACTGAGCGCAAA+CGG | 0.414803 | tig0032298:+26353 | None:intergenic |
| TGATTGTTATAAATAATAAA+TGG | 0.427899 | tig0032298:-20832 | Msa1448710:three_prime_UTR |
| CTTATATATCTGATGTTTCA+CGG | 0.432628 | tig0032298:-23853 | Msa1448710:CDS |
| CCAAAGCAAACCCTATTGAT+TGG | 0.435743 | tig0032298:-22366 | Msa1448710:CDS |
| GAAAATGAGAAGAAAGAAGA+AGG | 0.447368 | tig0032298:+26554 | None:intergenic |
| ATGAGTCATTCCAATCAATA+GGG | 0.448438 | tig0032298:+22356 | None:intergenic |
| TTCGATGGTTTGTTCATCAT+CGG | 0.450026 | tig0032298:-26117 | Msa1448710:CDS |
| ATTCCCGCGAGTACAGAATA+TGG | 0.455050 | tig0032298:-23830 | Msa1448710:intron |
| CTAGGTTTGCTTTAGAAACT+GGG | 0.456159 | tig0032298:+21150 | None:intergenic |
| GTGGGATCAATATCATTTGT+TGG | 0.461356 | tig0032298:+25104 | None:intergenic |
| GAAGGGTTGCTCAGATGGCC+TGG | 0.469919 | tig0032298:-24085 | Msa1448710:CDS |
| AATTATATATTGATTGATGT+TGG | 0.471348 | tig0032298:-26163 | Msa1448710:CDS |
| CTACCTGAGTCAGCATTCAA+TGG | 0.481362 | tig0032298:-25075 | Msa1448710:CDS |
| GTCGTCGGTGCCGTTGGATG+TGG | 0.481521 | tig0032298:+26479 | None:intergenic |
| GAACATGCTGATGCAGTCCT+TGG | 0.486458 | tig0032298:-25161 | Msa1448710:CDS |
| GAATGCTGACTCAGGTAGAT+GGG | 0.487485 | tig0032298:+25080 | None:intergenic |
| AGTTCCGTCGTCGGTGCCGT+TGG | 0.490322 | tig0032298:+26473 | None:intergenic |
| TTGATGAGACACAGTACATT+GGG | 0.499967 | tig0032298:+26396 | None:intergenic |
| ATAGTGCAATTAACTGGTAA+AGG | 0.503581 | tig0032298:+24005 | None:intergenic |
| ATCTCTAATTAGGATATTGG+TGG | 0.503723 | tig0032298:+20910 | None:intergenic |
| AATACGAAGGGTTGCTCAGA+TGG | 0.505761 | tig0032298:-24090 | Msa1448710:CDS |
| TCTCATCTCTTCTGGATCTA+CGG | 0.507309 | tig0032298:-26513 | Msa1448710:five_prime_UTR |
| GACGCCATGGCCACATCCAA+CGG | 0.511458 | tig0032298:-26489 | Msa1448710:exon |
| ATGAGAAGAAAGAAGAAGGA+AGG | 0.515376 | tig0032298:+26558 | None:intergenic |
| TGCTGATGCAGTCCTTGGAT+TGG | 0.516613 | tig0032298:-25156 | Msa1448710:CDS |
| AGAAGAAAGAAGAAGGAAGG+TGG | 0.521916 | tig0032298:+26561 | None:intergenic |
| GTCATTTCGAAAAGTGGAGC+TGG | 0.524520 | tig0032298:-23621 | Msa1448710:CDS |
| AAACCTGTGGAAAACAAAGA+TGG | 0.525306 | tig0032298:+22489 | None:intergenic |
| CGGAACTCCTCCCTCTGAAT+CGG | 0.526733 | tig0032298:-26457 | Msa1448710:CDS |
| AAAGATCAACGCCGATTCAG+AGG | 0.529103 | tig0032298:+26446 | None:intergenic |
| TTAATTGATTATTGTGGAAG+CGG | 0.535963 | tig0032298:-26196 | Msa1448710:CDS |
| TCTAATTAGGATATTGGTGG+GGG | 0.540434 | tig0032298:+20913 | None:intergenic |
| GACTGAGCGCAAACGGAACA+AGG | 0.540973 | tig0032298:+26360 | None:intergenic |
| GGTGCCGTTGGATGTGGCCA+TGG | 0.542231 | tig0032298:+26485 | None:intergenic |
| CTGGATCTACGGCGACGCCA+TGG | 0.542253 | tig0032298:-26502 | Msa1448710:exon |
| TCTCTAATTAGGATATTGGT+GGG | 0.545609 | tig0032298:+20911 | None:intergenic |
| TTAGGGAGACTGTGCTTCGA+TGG | 0.547897 | tig0032298:-26132 | Msa1448710:CDS |
| ACATCCAACGGCACCGACGA+CGG | 0.551645 | tig0032298:-26477 | Msa1448710:CDS |
| GAAAAGTGGAGCTGGACAGT+TGG | 0.552369 | tig0032298:-23613 | Msa1448710:CDS |
| CTCTAATTAGGATATTGGTG+GGG | 0.557419 | tig0032298:+20912 | None:intergenic |
| AAAAGATTCTTAGGATACAC+TGG | 0.570189 | tig0032298:+20953 | None:intergenic |
| ATTGATGAGACACAGTACAT+TGG | 0.574414 | tig0032298:+26395 | None:intergenic |
| GTTCAGAAACAACGCAAGGA+AGG | 0.576002 | tig0032298:-24119 | Msa1448710:CDS |
| TGAGTCAGCATTCAATGGAT+AGG | 0.583236 | tig0032298:-25070 | Msa1448710:intron |
| CCGCCTTCCAGCAAAACTGT+TGG | 0.583823 | tig0032298:+21124 | None:intergenic |
| TATCCATTGAATGCTGACTC+AGG | 0.588545 | tig0032298:+25072 | None:intergenic |
| AAGATCAACGCCGATTCAGA+GGG | 0.594996 | tig0032298:+26447 | None:intergenic |
| TTGTGGATGTAGGTAATGCA+TGG | 0.597231 | tig0032298:-23926 | Msa1448710:intron |
| TCGATGTTAATTGATTATTG+TGG | 0.600435 | tig0032298:-26202 | Msa1448710:CDS |
| AGACTCTTGAAATTGTGAAG+AGG | 0.603087 | tig0032298:-22395 | Msa1448710:CDS |
| ATTGATTATTGTGGAAGCGG+TGG | 0.603095 | tig0032298:-26193 | Msa1448710:CDS |
| TCAGTCATTGTCGATCCCAC+CGG | 0.604108 | tig0032298:-26343 | Msa1448710:CDS |
| ATCAACGCCGATTCAGAGGG+AGG | 0.605019 | tig0032298:+26450 | None:intergenic |
| ACTTGTTATATTATAGTGTG+AGG | 0.605776 | tig0032298:-21078 | Msa1448710:three_prime_UTR |
| AGAGGGAGGAGTTCCGTCGT+CGG | 0.610126 | tig0032298:+26464 | None:intergenic |
| ATACCATATTCTGTACTCGC+GGG | 0.613014 | tig0032298:+23827 | None:intergenic |
| ACGGAACAAGGAGGATCAGA+GGG | 0.613154 | tig0032298:+26372 | None:intergenic |
| AACGGAACAAGGAGGATCAG+AGG | 0.614159 | tig0032298:+26371 | None:intergenic |
| CTCGTACATCATCCAATCCA+AGG | 0.621489 | tig0032298:+25144 | None:intergenic |
| CCAGTTTCTAAAGCAAACCT+AGG | 0.630294 | tig0032298:-21149 | Msa1448710:three_prime_UTR |
| AGCAGAAGCAACATAGAGTG+AGG | 0.632037 | tig0032298:+20777 | None:intergenic |
| AGGAAGGACAAGAAATACGA+AGG | 0.640963 | tig0032298:-24103 | Msa1448710:CDS |
| CATACCATATTCTGTACTCG+CGG | 0.641738 | tig0032298:+23826 | None:intergenic |
| TTTGGTTCAGAAACAACGCA+AGG | 0.660626 | tig0032298:-24123 | Msa1448710:CDS |
| GGAAGGACAAGAAATACGAA+GGG | 0.662583 | tig0032298:-24102 | Msa1448710:CDS |
| AATGCTGACTCAGGTAGATG+GGG | 0.684919 | tig0032298:+25081 | None:intergenic |
| CTAATTAGGATATTGGTGGG+GGG | 0.709677 | tig0032298:+20914 | None:intergenic |
| GATGTAGGTAATGCATGGAG+AGG | 0.710977 | tig0032298:-23921 | Msa1448710:intron |
| TCATGAGTTTGATCACCACA+AGG | 0.734521 | tig0032298:-22337 | Msa1448710:CDS |
| ATGCTGACTCAGGTAGATGG+GGG | 0.739738 | tig0032298:+25082 | None:intergenic |
| TGAGCGCAAACGGAACAAGG+AGG | 0.758779 | tig0032298:+26363 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTAGATATTCATTATAT+AGG | - | tig0032298:23880-23899 | Msa1448710:CDS | 10.0% |
| !! | ATTTAGATATTCATTATATA+GGG | - | tig0032298:23881-23900 | Msa1448710:CDS | 10.0% |
| !! | ATTTAAACTAATTAACTAAT+CGG | - | tig0032298:24820-24839 | Msa1448710:intron | 10.0% |
| !! | TGATTGTTATAAATAATAAA+TGG | - | tig0032298:26565-26584 | Msa1448710:five_prime_UTR | 10.0% |
| !!! | AATTATATATTGATTGATGT+TGG | - | tig0032298:21234-21253 | Msa1448710:intron | 15.0% |
| !! | AAAATAGATAAATGACTATT+AGG | - | tig0032298:21465-21484 | Msa1448710:intron | 15.0% |
| !! | ATAACTAATATTAACGATAA+TGG | + | tig0032298:22513-22532 | None:intergenic | 15.0% |
| !! | TATTGTTAAAGATACATATT+GGG | + | tig0032298:22650-22669 | None:intergenic | 15.0% |
| !! | TTATTGTTAAAGATACATAT+TGG | + | tig0032298:22651-22670 | None:intergenic | 15.0% |
| !! | TTTCAATTATTTATTGTTAC+TGG | + | tig0032298:23013-23032 | None:intergenic | 15.0% |
| !! | TAATATTGGATTCATTATAT+AGG | - | tig0032298:23813-23832 | Msa1448710:intron | 15.0% |
| !! | AATATTGGATTCATTATATA+GGG | - | tig0032298:23814-23833 | Msa1448710:intron | 15.0% |
| !!! | TATATTTTTCCTATTTTCAA+AGG | + | tig0032298:24119-24138 | None:intergenic | 15.0% |
| !!! | TAGATGCTTTAAAAAATTTA+GGG | - | tig0032298:24322-24341 | Msa1448710:intron | 15.0% |
| !! | TTTAAAAAATTTAGGGATAT+CGG | - | tig0032298:24329-24348 | Msa1448710:intron | 15.0% |
| !! | TAATACTCCAATAATTAATT+GGG | + | tig0032298:24498-24517 | None:intergenic | 15.0% |
| !! | TTAATACTCCAATAATTAAT+TGG | + | tig0032298:24499-24518 | None:intergenic | 15.0% |
| !!! | GATTAGTTAATTAGTTTAAA+TGG | + | tig0032298:24821-24840 | None:intergenic | 15.0% |
| !! | TTTAAACTAATTAACTAATC+GGG | - | tig0032298:24821-24840 | Msa1448710:intron | 15.0% |
| !!! | ATATTTGACTTATTTACAAA+TGG | + | tig0032298:25121-25140 | None:intergenic | 15.0% |
| !! | TCTTGATACTATAATATTAT+TGG | - | tig0032298:25501-25520 | Msa1448710:intron | 15.0% |
| !!! | TAATTTTTCACTTTTTTGTT+TGG | - | tig0032298:25760-25779 | Msa1448710:intron | 15.0% |
| !! | AAAAGATGAAGGATTATTAA+CGG | - | tig0032298:21545-21564 | Msa1448710:intron | 20.0% |
| !! | TAGCATCAAAATATTTCTTA+AGG | - | tig0032298:21695-21714 | Msa1448710:intron | 20.0% |
| !! | TCAATTTCTTTGTTAATTAG+TGG | + | tig0032298:21807-21826 | None:intergenic | 20.0% |
| !!! | AGAATAAAAAACTAGTTCTT+TGG | - | tig0032298:22187-22206 | Msa1448710:intron | 20.0% |
| !!! | ATCTTAAGATTTGTTTATGT+AGG | + | tig0032298:22435-22454 | None:intergenic | 20.0% |
| !!! | CAATTAATGAACTTTTCATT+TGG | + | tig0032298:22926-22945 | None:intergenic | 20.0% |
| !!! | AGTAAAGCATTCTTAATATA+AGG | + | tig0032298:23424-23443 | None:intergenic | 20.0% |
| !! | ATCTATTTGTTTCATCATTT+AGG | - | tig0032298:23680-23699 | Msa1448710:intron | 20.0% |
| !! | TCTATTTGTTTCATCATTTA+GGG | - | tig0032298:23681-23700 | Msa1448710:intron | 20.0% |
| !!! | TTCTGTTGTCAATTTTTTTT+GGG | - | tig0032298:23844-23863 | Msa1448710:CDS | 20.0% |
| !!! | CTAAATTTTTTAAAGCATCT+AGG | + | tig0032298:24323-24342 | None:intergenic | 20.0% |
| !!! | CTAGATGCTTTAAAAAATTT+AGG | - | tig0032298:24321-24340 | Msa1448710:intron | 20.0% |
| !! | AATAGAACCCAATTAATTAT+TGG | - | tig0032298:24488-24507 | Msa1448710:intron | 20.0% |
| !! | TTCCATTGATATTTATATAC+AGG | + | tig0032298:24626-24645 | None:intergenic | 20.0% |
| !!! | TAAAAATAGAAGCTTGTTTT+TGG | + | tig0032298:24748-24767 | None:intergenic | 20.0% |
| !! | GATAGGATATATAAACTATA+GGG | + | tig0032298:24778-24797 | None:intergenic | 20.0% |
| !! | TGATAGGATATATAAACTAT+AGG | + | tig0032298:24779-24798 | None:intergenic | 20.0% |
| !!! | AGTTAATTAGTTTAAATGGT+TGG | + | tig0032298:24817-24836 | None:intergenic | 20.0% |
| !! | GGTGGTAAAATATTATTAAT+TGG | - | tig0032298:24970-24989 | Msa1448710:intron | 20.0% |
| !! | GATGAAAAAAATGATGATTT+GGG | + | tig0032298:25372-25391 | None:intergenic | 20.0% |
| !! | TGATGAAAAAAATGATGATT+TGG | + | tig0032298:25373-25392 | None:intergenic | 20.0% |
| !!! | ATCATTTTTTTCATCATGAA+CGG | - | tig0032298:25377-25396 | Msa1448710:intron | 20.0% |
| !!! | ATTGAAGTTGATAAAATTTG+CGG | - | tig0032298:25845-25864 | Msa1448710:intron | 20.0% |
| !! | TAAATAAGATCAACTGTATA+TGG | + | tig0032298:26195-26214 | None:intergenic | 20.0% |
| !!! | TTGATCTTATTTAGATTCAT+TGG | - | tig0032298:26202-26221 | Msa1448710:CDS | 20.0% |
| !! | AAAAGATTACATCTCTAATT+AGG | + | tig0032298:26500-26519 | None:intergenic | 20.0% |
| ! | TCGATGTTAATTGATTATTG+TGG | - | tig0032298:21195-21214 | Msa1448710:exon | 25.0% |
| ! | TTAATTGATTATTGTGGAAG+CGG | - | tig0032298:21201-21220 | Msa1448710:exon | 25.0% |
| ! | AAAGATGAAGGATTATTAAC+GGG | - | tig0032298:21546-21565 | Msa1448710:intron | 25.0% |
| ! | ATTTCTTTGTTAATTAGTGG+TGG | + | tig0032298:21804-21823 | None:intergenic | 25.0% |
| !! | ATGGCAACTAGAAATTTTAA+GGG | + | tig0032298:21880-21899 | None:intergenic | 25.0% |
| !! | AATGGCAACTAGAAATTTTA+AGG | + | tig0032298:21881-21900 | None:intergenic | 25.0% |
| !!! | TTAAAATTTCTAGTTGCCAT+TGG | - | tig0032298:21880-21899 | Msa1448710:intron | 25.0% |
| !! | CATTTTGTAATCTGATTCTA+TGG | - | tig0032298:21905-21924 | Msa1448710:intron | 25.0% |
| !! | ATATCATTTGTTGGACTAAA+AGG | + | tig0032298:22287-22306 | None:intergenic | 25.0% |
| ! | TTACATATCAAAACACACAA+CGG | + | tig0032298:22365-22384 | None:intergenic | 25.0% |
| ! | CTTACTTAAACTAAAAGTTC+TGG | - | tig0032298:22537-22556 | Msa1448710:intron | 25.0% |
| !!! | CTTTTAAGAGCATTTATCTA+GGG | + | tig0032298:22578-22597 | None:intergenic | 25.0% |
| !!! | TCTTTTAAGAGCATTTATCT+AGG | + | tig0032298:22579-22598 | None:intergenic | 25.0% |
| ! | AAAAGATATAGATAAGCACA+TGG | - | tig0032298:22593-22612 | Msa1448710:intron | 25.0% |
| !! | ATTTTTGTTGAAGTTCTTTG+TGG | - | tig0032298:22616-22635 | Msa1448710:intron | 25.0% |
| !!! | GGTATTGAATTTTTCTAGTA+TGG | + | tig0032298:22961-22980 | None:intergenic | 25.0% |
| !!! | TTTGATTTTTGGACAAGTTT+TGG | + | tig0032298:23057-23076 | None:intergenic | 25.0% |
| !!! | GTTCTGCTAAATTTGATTTT+TGG | + | tig0032298:23068-23087 | None:intergenic | 25.0% |
| ! | AAATTTAGCAGAACAATACT+AGG | - | tig0032298:23074-23093 | Msa1448710:intron | 25.0% |
| ! | AAAAAGATAGTGCAATTAAC+TGG | + | tig0032298:23401-23420 | None:intergenic | 25.0% |
| ! | CTTATATATCTGATGTTTCA+CGG | - | tig0032298:23544-23563 | Msa1448710:intron | 25.0% |
| ! | CTATTTGTTTCATCATTTAG+GGG | - | tig0032298:23682-23701 | Msa1448710:intron | 25.0% |
| ! | TATTTGTTTCATCATTTAGG+GGG | - | tig0032298:23683-23702 | Msa1448710:intron | 25.0% |
| !! | TTTTCGAAATGACTGTAAAA+AGG | + | tig0032298:23769-23788 | None:intergenic | 25.0% |
| !!! | GTTCTGTTGTCAATTTTTTT+TGG | - | tig0032298:23843-23862 | Msa1448710:CDS | 25.0% |
| !!! | CTATGTGTTATTTTGTTTAG+TGG | - | tig0032298:24056-24075 | Msa1448710:CDS | 25.0% |
| ! | TGTATGAGAAAAACGAAATA+TGG | + | tig0032298:24214-24233 | None:intergenic | 25.0% |
| !! | AAGTAACTTGACTTTTCTAT+CGG | + | tig0032298:24385-24404 | None:intergenic | 25.0% |
| ! | CATTTATCAATGAGAAAGTA+AGG | + | tig0032298:24463-24482 | None:intergenic | 25.0% |
| !! | GTAATGGAATATAGTGAATT+TGG | - | tig0032298:24535-24554 | Msa1448710:intron | 25.0% |
| ! | TTGATAGAAAATATCTGCTA+TGG | - | tig0032298:24599-24618 | Msa1448710:intron | 25.0% |
| ! | GTCCTGTATATAAATATCAA+TGG | - | tig0032298:24621-24640 | Msa1448710:intron | 25.0% |
| !!! | GTTATTTCTTCATAGATGAT+AGG | + | tig0032298:24795-24814 | None:intergenic | 25.0% |
| ! | AAAAATACATAACATACCAG+AGG | + | tig0032298:25230-25249 | None:intergenic | 25.0% |
| ! | TCACCTTACTATAAGTTTAT+GGG | + | tig0032298:25334-25353 | None:intergenic | 25.0% |
| !! | ATGCACATTTTACAAAATCA+GGG | + | tig0032298:25543-25562 | None:intergenic | 25.0% |
| !! | AATGCACATTTTACAAAATC+AGG | + | tig0032298:25544-25563 | None:intergenic | 25.0% |
| !!! | ATTGTGTTGATTGACATTTA+TGG | - | tig0032298:25569-25588 | Msa1448710:intron | 25.0% |
| !!! | TTGAAGTTGATAAAATTTGC+GGG | - | tig0032298:25846-25865 | Msa1448710:intron | 25.0% |
| ! | ATTACGTAATAGTAATGGTT+AGG | + | tig0032298:25926-25945 | None:intergenic | 25.0% |
| ! | CAAAGATTACGTAATAGTAA+TGG | + | tig0032298:25931-25950 | None:intergenic | 25.0% |
| ! | TATGGCTAAAGTACAAATAA+GGG | + | tig0032298:25973-25992 | None:intergenic | 25.0% |
| ! | ATTTATGCTCATGATGATTA+TGG | + | tig0032298:26014-26033 | None:intergenic | 25.0% |
| !!! | ACTTGTTATATTATAGTGTG+AGG | - | tig0032298:26319-26338 | Msa1448710:intron | 25.0% |
| !! | TGAGGAAATCTTGATTTTTA+TGG | - | tig0032298:26337-26356 | Msa1448710:CDS | 25.0% |
| ! | TACATCTCTAATTAGGATAT+TGG | + | tig0032298:26493-26512 | None:intergenic | 25.0% |
| GAAAATGAGAAGAAAGAAGA+AGG | + | tig0032298:20846-20865 | None:intergenic | 30.0% | |
| !! | AAAGAGAGTACCTGTAATTA+GGG | + | tig0032298:21087-21106 | None:intergenic | 30.0% |
| TTGAAGCTTGATTTAGTGAT+TGG | - | tig0032298:21385-21404 | Msa1448710:intron | 30.0% | |
| ! | TTTTATGAAAAGTTGCTCGT+GGG | + | tig0032298:21448-21467 | None:intergenic | 30.0% |
| ! | TTTTTATGAAAAGTTGCTCG+TGG | + | tig0032298:21449-21468 | None:intergenic | 30.0% |
| ATTTCATTTCAGATGTATGC+TGG | - | tig0032298:21623-21642 | Msa1448710:intron | 30.0% | |
| !!! | ATATTTTGATGCTATAGCCA+TGG | + | tig0032298:21689-21708 | None:intergenic | 30.0% |
| ! | TAATGTTGTCATTTCTGTGT+TGG | - | tig0032298:21728-21747 | Msa1448710:intron | 30.0% |
| !! | TTCTGTGTTGGTTATAAAAC+TGG | - | tig0032298:21740-21759 | Msa1448710:intron | 30.0% |
| ! | TGTTGGTTATAAAACTGGTA+AGG | - | tig0032298:21745-21764 | Msa1448710:intron | 30.0% |
| ! | TGGCAACTAGAAATTTTAAG+GGG | + | tig0032298:21879-21898 | None:intergenic | 30.0% |
| CAGATTACAAAATGAACCAA+TGG | + | tig0032298:21899-21918 | None:intergenic | 30.0% | |
| TGACATGATATTCAAGAACA+TGG | - | tig0032298:22071-22090 | Msa1448710:intron | 30.0% | |
| AGACAAAAGGAAGAAAATCT+AGG | + | tig0032298:22119-22138 | None:intergenic | 30.0% | |
| ! | GATTTTCTTCCTTTTGTCTA+CGG | - | tig0032298:22120-22139 | Msa1448710:intron | 30.0% |
| TCAGGTCAATTCAAATTTCA+AGG | + | tig0032298:22152-22171 | None:intergenic | 30.0% | |
| TCTCAAAGACTGAAAATTTC+AGG | + | tig0032298:22170-22189 | None:intergenic | 30.0% | |
| ATGTAGGTTTCGAAAATAGA+GGG | + | tig0032298:22419-22438 | None:intergenic | 30.0% | |
| TATGTAGGTTTCGAAAATAG+AGG | + | tig0032298:22420-22439 | None:intergenic | 30.0% | |
| ! | TCTGAGACTATTTGATAGTT+AGG | + | tig0032298:22477-22496 | None:intergenic | 30.0% |
| TCACTTACCAATCTGTTAAA+AGG | - | tig0032298:22687-22706 | Msa1448710:intron | 30.0% | |
| !! | TAAGGTACCTTTTAACAGAT+TGG | + | tig0032298:22697-22716 | None:intergenic | 30.0% |
| TAGAGCAACATTGATCAATA+AGG | + | tig0032298:22715-22734 | None:intergenic | 30.0% | |
| TATAATTCTGTTGATATCCC+AGG | - | tig0032298:22761-22780 | Msa1448710:intron | 30.0% | |
| AACTCAGATGCTTGTATATT+TGG | - | tig0032298:22859-22878 | Msa1448710:intron | 30.0% | |
| !!! | TTTTTGGACAAGTTTTGGTT+TGG | + | tig0032298:23052-23071 | None:intergenic | 30.0% |
| ACACATGCTCAAAATATAAC+TGG | + | tig0032298:23103-23122 | None:intergenic | 30.0% | |
| ATCATAATTCATGCTGAGAT+AGG | + | tig0032298:23158-23177 | None:intergenic | 30.0% | |
| ! | CACCTTTTCTTTGATTGTAT+GGG | - | tig0032298:23179-23198 | Msa1448710:intron | 30.0% |
| !!! | TGTTGCAAAGTTTTAAACCA+TGG | + | tig0032298:23232-23251 | None:intergenic | 30.0% |
| AGAAGAGAAGTTTCCTTATT+TGG | - | tig0032298:23256-23275 | Msa1448710:intron | 30.0% | |
| TTCAATCCTGATGCAAAAAA+TGG | + | tig0032298:23365-23384 | None:intergenic | 30.0% | |
| ATAGTGCAATTAACTGGTAA+AGG | + | tig0032298:23395-23414 | None:intergenic | 30.0% | |
| !!! | TTACTGTTTTTTGTGGATGT+AGG | - | tig0032298:23461-23480 | Msa1448710:intron | 30.0% |
| !! | ATCTGTTTGGGATTTCTTTT+TGG | - | tig0032298:23504-23523 | Msa1448710:intron | 30.0% |
| !! | TTCTTTTTGGTGAGAAAAGT+AGG | - | tig0032298:23517-23536 | Msa1448710:intron | 30.0% |
| !! | TCTTTTTGGTGAGAAAAGTA+GGG | - | tig0032298:23518-23537 | Msa1448710:intron | 30.0% |
| TTTACAGTCATTTCGAAAAG+TGG | - | tig0032298:23770-23789 | Msa1448710:intron | 30.0% | |
| ACAGTTGGATCTTCTAATAT+TGG | - | tig0032298:23799-23818 | Msa1448710:intron | 30.0% | |
| ! | TAGCACAAACCTTTGAAAAT+AGG | - | tig0032298:24107-24126 | Msa1448710:CDS | 30.0% |
| !! | TTTCGTTTTTCTCATACAAG+AGG | - | tig0032298:24216-24235 | Msa1448710:intron | 30.0% |
| TACTTGTTCAATAACATGAC+TGG | - | tig0032298:24255-24274 | Msa1448710:intron | 30.0% | |
| ! | AGTAACTTGACTTTTCTATC+GGG | + | tig0032298:24384-24403 | None:intergenic | 30.0% |
| CCATTACGCATTTATGATAA+TGG | + | tig0032298:24522-24541 | None:intergenic | 30.0% | |
| CCATTATCATAAATGCGTAA+TGG | - | tig0032298:24519-24538 | Msa1448710:intron | 30.0% | |
| ATTTGGTCATAAGTGTGTAA+TGG | - | tig0032298:24552-24571 | Msa1448710:intron | 30.0% | |
| ! | GTGTGTAATGGAATATAGAA+AGG | - | tig0032298:24564-24583 | Msa1448710:intron | 30.0% |
| GGAATACAAGATCATAAATG+AGG | - | tig0032298:24642-24661 | Msa1448710:intron | 30.0% | |
| !!! | AGAAGCTTGTTTTTGGTTTA+GGG | + | tig0032298:24741-24760 | None:intergenic | 30.0% |
| !!! | TAGAAGCTTGTTTTTGGTTT+AGG | + | tig0032298:24742-24761 | None:intergenic | 30.0% |
| CAAAATTGAAAACAAACCTG+TGG | + | tig0032298:24924-24943 | None:intergenic | 30.0% | |
| ATGAGTCATTCCAATCAATA+GGG | + | tig0032298:25044-25063 | None:intergenic | 30.0% | |
| !! | ACAATGAGTTTTTGAAAGAG+TGG | - | tig0032298:25083-25102 | Msa1448710:CDS | 30.0% |
| ATTTACAAATGGATACCTTC+TGG | + | tig0032298:25110-25129 | None:intergenic | 30.0% | |
| TATTTATCATTGTACTCCTC+TGG | - | tig0032298:25211-25230 | Msa1448710:intron | 30.0% | |
| CACCTTACTATAAGTTTATG+GGG | + | tig0032298:25333-25352 | None:intergenic | 30.0% | |
| CTCACCTTACTATAAGTTTA+TGG | + | tig0032298:25335-25354 | None:intergenic | 30.0% | |
| CATAAACTTATAGTAAGGTG+AGG | - | tig0032298:25333-25352 | Msa1448710:intron | 30.0% | |
| ! | AAAAAATGATGATTTGGGTC+AGG | + | tig0032298:25367-25386 | None:intergenic | 30.0% |
| GTACATAGAGAAGTAGAATA+TGG | - | tig0032298:25399-25418 | Msa1448710:intron | 30.0% | |
| TATCAAGAAAAAACGAGACA+TGG | + | tig0032298:25459-25478 | None:intergenic | 30.0% | |
| AGAAAAAACATAAGACCAGA+GGG | + | tig0032298:25484-25503 | None:intergenic | 30.0% | |
| AAGAAAAAACATAAGACCAG+AGG | + | tig0032298:25485-25504 | None:intergenic | 30.0% | |
| TTGTGTAGTGATTGACATTT+AGG | - | tig0032298:25663-25682 | Msa1448710:intron | 30.0% | |
| TGTGTAGTGATTGACATTTA+GGG | - | tig0032298:25664-25683 | Msa1448710:intron | 30.0% | |
| !! | TGAAGTTGATAAAATTTGCG+GGG | - | tig0032298:25847-25866 | Msa1448710:intron | 30.0% |
| TTAGGAACCACAAAAATACT+GGG | + | tig0032298:25908-25927 | None:intergenic | 30.0% | |
| !!! | AAATAAGGGTATGCTGTTTT+AGG | + | tig0032298:25959-25978 | None:intergenic | 30.0% |
| GTATGGCTAAAGTACAAATA+AGG | + | tig0032298:25974-25993 | None:intergenic | 30.0% | |
| ! | TGTATTATTTTCCTCTTGCA+GGG | - | tig0032298:26148-26167 | Msa1448710:CDS | 30.0% |
| ! | GGGCATCTTTGAAAATATTA+AGG | + | tig0032298:26230-26249 | None:intergenic | 30.0% |
| AAAAGATTCTTAGGATACAC+TGG | + | tig0032298:26447-26466 | None:intergenic | 30.0% | |
| ! | TATCCTAAGAATCTTTTGCA+GGG | - | tig0032298:26450-26469 | Msa1448710:CDS | 30.0% |
| TCTCTAATTAGGATATTGGT+GGG | + | tig0032298:26489-26508 | None:intergenic | 30.0% | |
| ATCTCTAATTAGGATATTGG+TGG | + | tig0032298:26490-26509 | None:intergenic | 30.0% | |
| ATGAGAAGAAAGAAGAAGGA+AGG | + | tig0032298:20842-20861 | None:intergenic | 35.0% | |
| TTGATGAGACACAGTACATT+GGG | + | tig0032298:21004-21023 | None:intergenic | 35.0% | |
| ATTGATGAGACACAGTACAT+TGG | + | tig0032298:21005-21024 | None:intergenic | 35.0% | |
| ! | CTGTAATTAGGGTTTTTCTC+CGG | + | tig0032298:21076-21095 | None:intergenic | 35.0% |
| !! | GAAAGAGAGTACCTGTAATT+AGG | + | tig0032298:21088-21107 | None:intergenic | 35.0% |
| ! | TTGATGTGATGTTCGTTTTG+TGG | - | tig0032298:21154-21173 | Msa1448710:three_prime_UTR | 35.0% |
| ! | TGTTCGTTTTGTGGATTTGT+AGG | - | tig0032298:21163-21182 | Msa1448710:three_prime_UTR | 35.0% |
| !! | TTCGATGGTTTGTTCATCAT+CGG | - | tig0032298:21280-21299 | Msa1448710:intron | 35.0% |
| ! | TAACTCACAGAATCGATTCT+TGG | + | tig0032298:21309-21328 | None:intergenic | 35.0% |
| TCCAACAAGTCAAAAGATGA+AGG | - | tig0032298:21534-21553 | Msa1448710:intron | 35.0% | |
| !!! | TCCTTCATCTTTTGACTTGT+TGG | + | tig0032298:21538-21557 | None:intergenic | 35.0% |
| CAGGATGAAATCATAAGAGT+TGG | - | tig0032298:21569-21588 | Msa1448710:intron | 35.0% | |
| !! | GCAGAGCATCTGATTTTTAA+GGG | - | tig0032298:21598-21617 | Msa1448710:intron | 35.0% |
| TTTCAGATGTATGCTGGTAA+AGG | - | tig0032298:21629-21648 | Msa1448710:intron | 35.0% | |
| TATGCTGGTAAAGGTTTCTA+GGG | - | tig0032298:21638-21657 | Msa1448710:intron | 35.0% | |
| ATGCCATGAAGAGAAAGAAA+AGG | - | tig0032298:21662-21681 | Msa1448710:intron | 35.0% | |
| TGCCATGAAGAGAAAGAAAA+GGG | - | tig0032298:21663-21682 | Msa1448710:intron | 35.0% | |
| !! | TTTGTTAATTAGTGGTGGAC+TGG | + | tig0032298:21799-21818 | None:intergenic | 35.0% |
| CCTAAAATGAATTTCTTCCC+AGG | + | tig0032298:22002-22021 | None:intergenic | 35.0% | |
| ! | CCTGGGAAGAAATTCATTTT+AGG | - | tig0032298:21999-22018 | Msa1448710:intron | 35.0% |
| GTGGGATCAATATCATTTGT+TGG | + | tig0032298:22296-22315 | None:intergenic | 35.0% | |
| GATACTGCACATAATATCCT+GGG | + | tig0032298:22781-22800 | None:intergenic | 35.0% | |
| ! | GTGCTTACTGCTTTAGATTT+GGG | + | tig0032298:22988-23007 | None:intergenic | 35.0% |
| ! | TGTGCTTACTGCTTTAGATT+TGG | + | tig0032298:22989-23008 | None:intergenic | 35.0% |
| !!! | GGTTTGGCTTTTGTTTTTAC+TGG | + | tig0032298:23036-23055 | None:intergenic | 35.0% |
| ! | CATTGCAATCTATGGGTTAA+GGG | + | tig0032298:23130-23149 | None:intergenic | 35.0% |
| ! | ACATTGCAATCTATGGGTTA+AGG | + | tig0032298:23131-23150 | None:intergenic | 35.0% |
| ! | GCACCTTTTCTTTGATTGTA+TGG | - | tig0032298:23178-23197 | Msa1448710:intron | 35.0% |
| AGCCCATACAATCAAAGAAA+AGG | + | tig0032298:23184-23203 | None:intergenic | 35.0% | |
| ! | ATTCAACTACTTGAGAGCAT+AGG | + | tig0032298:23209-23228 | None:intergenic | 35.0% |
| !! | CGTTGTTTCTGAACCAAATA+AGG | + | tig0032298:23272-23291 | None:intergenic | 35.0% |
| !!! | AATCAGCCATTTTTTGCATC+AGG | - | tig0032298:23356-23375 | Msa1448710:intron | 35.0% |
| ! | TGCTTTACTCCTTTTATACG+AGG | - | tig0032298:23435-23454 | Msa1448710:intron | 35.0% |
| CAGTAAAGTCCTCGTATAAA+AGG | + | tig0032298:23447-23466 | None:intergenic | 35.0% | |
| !!! | GAGGACTTTACTGTTTTTTG+TGG | - | tig0032298:23454-23473 | Msa1448710:intron | 35.0% |
| ! | ATTTGAAATACCTTCGTGCT+TGG | - | tig0032298:23594-23613 | Msa1448710:CDS | 35.0% |
| !! | TTCTCAGCATGCTTTATTTC+TGG | - | tig0032298:23909-23928 | Msa1448710:CDS | 35.0% |
| CTTAATGTCACTCTCTCTTA+AGG | - | tig0032298:23956-23975 | Msa1448710:intron | 35.0% | |
| GTTGAATCAAATCTAGCTGT+AGG | + | tig0032298:24037-24056 | None:intergenic | 35.0% | |
| AAGAGACACTATAGTCTATC+AGG | + | tig0032298:24170-24189 | None:intergenic | 35.0% | |
| TTCAATAACATGACTGGAGA+AGG | - | tig0032298:24261-24280 | Msa1448710:intron | 35.0% | |
| CACACTGAGTAATCATCTAA+TGG | + | tig0032298:24287-24306 | None:intergenic | 35.0% | |
| ! | TAACTTGACTTTTCTATCGG+GGG | + | tig0032298:24382-24401 | None:intergenic | 35.0% |
| ! | GTAACTTGACTTTTCTATCG+GGG | + | tig0032298:24383-24402 | None:intergenic | 35.0% |
| !!! | TTTTTTGTGTCACTACAGAC+TGG | - | tig0032298:24873-24892 | Msa1448710:intron | 35.0% |
| AAACCTGTGGAAAACAAAGA+TGG | + | tig0032298:24911-24930 | None:intergenic | 35.0% | |
| TGAATGTTACACTATCTCAC+TGG | - | tig0032298:24949-24968 | Msa1448710:intron | 35.0% | |
| AGACTCTTGAAATTGTGAAG+AGG | - | tig0032298:25002-25021 | Msa1448710:intron | 35.0% | |
| CATGAGTCATTCCAATCAAT+AGG | + | tig0032298:25045-25064 | None:intergenic | 35.0% | |
| TCAAAAACTCATTGTCCTTG+TGG | + | tig0032298:25078-25097 | None:intergenic | 35.0% | |
| CATGCTACTATCAGATTGTT+GGG | + | tig0032298:25176-25195 | None:intergenic | 35.0% | |
| TCATGCTACTATCAGATTGT+TGG | + | tig0032298:25177-25196 | None:intergenic | 35.0% | |
| ACTCTTCTATGAATGTGCTT+AGG | - | tig0032298:25266-25285 | Msa1448710:intron | 35.0% | |
| CTCTTCTATGAATGTGCTTA+GGG | - | tig0032298:25267-25286 | Msa1448710:intron | 35.0% | |
| GTCCCCATAAACTTATAGTA+AGG | - | tig0032298:25328-25347 | Msa1448710:intron | 35.0% | |
| !!! | TTTTTTCTTGATACTCCCTC+TGG | - | tig0032298:25466-25485 | Msa1448710:intron | 35.0% |
| ATTTATGGTGTGTTTGCATG+TGG | - | tig0032298:25584-25603 | Msa1448710:intron | 35.0% | |
| TGTGGAGATAAATAGTGAGT+AGG | - | tig0032298:25602-25621 | Msa1448710:intron | 35.0% | |
| ATAGTGAGTAGGTATGAAGT+TGG | - | tig0032298:25613-25632 | Msa1448710:intron | 35.0% | |
| TAGTGAGTAGGTATGAAGTT+GGG | - | tig0032298:25614-25633 | Msa1448710:intron | 35.0% | |
| ! | ATTTAGGGTGTGTTTGTATG+TGG | - | tig0032298:25679-25698 | Msa1448710:intron | 35.0% |
| TGTGGAGATAAATAGTGAGT+AGG | - | tig0032298:25602-25621 | Msa1448710:intron | 35.0% | |
| ATAGTGAGTAGGTATGAAGT+TGG | - | tig0032298:25613-25632 | Msa1448710:intron | 35.0% | |
| TAGTGAGTAGGTATGAAGTT+GGG | - | tig0032298:25614-25633 | Msa1448710:intron | 35.0% | |
| GTTAGGAACCACAAAAATAC+TGG | + | tig0032298:25909-25928 | None:intergenic | 35.0% | |
| TATGGCCAAGGTACAAATAA+GGG | + | tig0032298:25996-26015 | None:intergenic | 35.0% | |
| TTATGGCCAAGGTACAAATA+AGG | + | tig0032298:25997-26016 | None:intergenic | 35.0% | |
| ATCACTACTGATCATGAGAA+GGG | + | tig0032298:26088-26107 | None:intergenic | 35.0% | |
| ! | CTGTATTATTTTCCTCTTGC+AGG | - | tig0032298:26147-26166 | Msa1448710:CDS | 35.0% |
| !! | CTAGGTTTGCTTTAGAAACT+GGG | + | tig0032298:26250-26269 | None:intergenic | 35.0% |
| ! | GTATCCTAAGAATCTTTTGC+AGG | - | tig0032298:26449-26468 | Msa1448710:CDS | 35.0% |
| TCTAATTAGGATATTGGTGG+GGG | + | tig0032298:26487-26506 | None:intergenic | 35.0% | |
| CTCTAATTAGGATATTGGTG+GGG | + | tig0032298:26488-26507 | None:intergenic | 35.0% | |
| AGAAGAAAGAAGAAGGAAGG+TGG | + | tig0032298:20839-20858 | None:intergenic | 40.0% | |
| TCTTTCTCTCTCATCTCTTC+TGG | - | tig0032298:20876-20895 | Msa1448710:three_prime_UTR | 40.0% | |
| TCTCATCTCTTCTGGATCTA+CGG | - | tig0032298:20884-20903 | Msa1448710:three_prime_UTR | 40.0% | |
| ! | AATTAGGGTTTTTCTCCGGT+GGG | + | tig0032298:21072-21091 | None:intergenic | 40.0% |
| ! | TAATTAGGGTTTTTCTCCGG+TGG | + | tig0032298:21073-21092 | None:intergenic | 40.0% |
| CGGAGAAAAACCCTAATTAC+AGG | - | tig0032298:21074-21093 | Msa1448710:three_prime_UTR | 40.0% | |
| ATTGATTATTGTGGAAGCGG+TGG | - | tig0032298:21204-21223 | Msa1448710:exon | 40.0% | |
| TTGATGTTGGCAAGACGTTT+AGG | - | tig0032298:21247-21266 | Msa1448710:intron | 40.0% | |
| TGATGTTGGCAAGACGTTTA+GGG | - | tig0032298:21248-21267 | Msa1448710:intron | 40.0% | |
| ! | ATGAAGGATTATTAACGGGC+AGG | - | tig0032298:21550-21569 | Msa1448710:intron | 40.0% |
| !! | CGCAGAGCATCTGATTTTTA+AGG | - | tig0032298:21597-21616 | Msa1448710:intron | 40.0% |
| GTATGCTGGTAAAGGTTTCT+AGG | - | tig0032298:21637-21656 | Msa1448710:intron | 40.0% | |
| !! | AATTTTAAGGGGTTCTGCTC+TGG | + | tig0032298:21868-21887 | None:intergenic | 40.0% |
| AGGAACATACCGTAGACAAA+AGG | + | tig0032298:22132-22151 | None:intergenic | 40.0% | |
| !! | TATCCATTGAATGCTGACTC+AGG | + | tig0032298:22328-22347 | None:intergenic | 40.0% |
| TGAGTCAGCATTCAATGGAT+AGG | - | tig0032298:22327-22346 | Msa1448710:CDS | 40.0% | |
| CGATACTGCACATAATATCC+TGG | + | tig0032298:22782-22801 | None:intergenic | 40.0% | |
| AGCATCTGAGTTCAGTGATT+GGG | + | tig0032298:22851-22870 | None:intergenic | 40.0% | |
| AAGCATCTGAGTTCAGTGAT+TGG | + | tig0032298:22852-22871 | None:intergenic | 40.0% | |
| ! | ACTGCTTTAGATTTGGGACT+TGG | + | tig0032298:22982-23001 | None:intergenic | 40.0% |
| GGAGTCACATTGCAATCTAT+GGG | + | tig0032298:23137-23156 | None:intergenic | 40.0% | |
| AGGAGTCACATTGCAATCTA+TGG | + | tig0032298:23138-23157 | None:intergenic | 40.0% | |
| CTCTCAAGTAGTTGAATCCA+TGG | - | tig0032298:23212-23231 | Msa1448710:intron | 40.0% | |
| ! | TTTGGTTCAGAAACAACGCA+AGG | - | tig0032298:23274-23293 | Msa1448710:intron | 40.0% |
| AGGAAGGACAAGAAATACGA+AGG | - | tig0032298:23294-23313 | Msa1448710:intron | 40.0% | |
| GGAAGGACAAGAAATACGAA+GGG | - | tig0032298:23295-23314 | Msa1448710:intron | 40.0% | |
| ! | GTCATCAGTGATAATGTTCC+AGG | + | tig0032298:23333-23352 | None:intergenic | 40.0% |
| TTGTGGATGTAGGTAATGCA+TGG | - | tig0032298:23471-23490 | Msa1448710:intron | 40.0% | |
| TGGAGAGGATTACATCTGTT+TGG | - | tig0032298:23491-23510 | Msa1448710:intron | 40.0% | |
| GGAGAGGATTACATCTGTTT+GGG | - | tig0032298:23492-23511 | Msa1448710:intron | 40.0% | |
| ! | TTTTGGTGAGAAAAGTAGGG+TGG | - | tig0032298:23521-23540 | Msa1448710:intron | 40.0% |
| ATACCATATTCTGTACTCGC+GGG | + | tig0032298:23573-23592 | None:intergenic | 40.0% | |
| CATACCATATTCTGTACTCG+CGG | + | tig0032298:23574-23593 | None:intergenic | 40.0% | |
| ATACATATGTCCAAGCACGA+AGG | + | tig0032298:23607-23626 | None:intergenic | 40.0% | |
| TCAGTTCCATCTCCCAAAAT+TGG | - | tig0032298:23631-23650 | Msa1448710:intron | 40.0% | |
| ! | CACACTCGTAGTCCAATTTT+GGG | + | tig0032298:23646-23665 | None:intergenic | 40.0% |
| AATGTCACTCTCTCTTAAGG+AGG | - | tig0032298:23959-23978 | Msa1448710:intron | 40.0% | |
| ATGTCACTCTCTCTTAAGGA+GGG | - | tig0032298:23960-23979 | Msa1448710:intron | 40.0% | |
| TAAACTGCTTCTTACTTCCC+TGG | - | tig0032298:24006-24025 | Msa1448710:intron | 40.0% | |
| ! | AACTTGACTTTTCTATCGGG+GGG | + | tig0032298:24381-24400 | None:intergenic | 40.0% |
| TAAATGAGGAGCAAGAGACA+AGG | - | tig0032298:24656-24675 | Msa1448710:intron | 40.0% | |
| AAGAGACAAGGATATTGCAG+AGG | - | tig0032298:24668-24687 | Msa1448710:intron | 40.0% | |
| !!! | TGTCCATCTTTGTTTTCCAC+AGG | - | tig0032298:24905-24924 | Msa1448710:intron | 40.0% |
| ATGTTACACTATCTCACTGG+TGG | - | tig0032298:24952-24971 | Msa1448710:intron | 40.0% | |
| ! | CCAATCAATAGGGTTTGCTT+TGG | + | tig0032298:25034-25053 | None:intergenic | 40.0% |
| CCAAAGCAAACCCTATTGAT+TGG | - | tig0032298:25031-25050 | Msa1448710:intron | 40.0% | |
| TCATGAGTTTGATCACCACA+AGG | - | tig0032298:25060-25079 | Msa1448710:intron | 40.0% | |
| !! | TTTTGAAAGAGTGGTCCAGA+AGG | - | tig0032298:25092-25111 | Msa1448710:CDS | 40.0% |
| TCTATGAATGTGCTTAGGGA+AGG | - | tig0032298:25271-25290 | Msa1448710:intron | 40.0% | |
| ! | AATGATGATTTGGGTCAGGA+GGG | + | tig0032298:25363-25382 | None:intergenic | 40.0% |
| ! | AAATGATGATTTGGGTCAGG+AGG | + | tig0032298:25364-25383 | None:intergenic | 40.0% |
| !! | TTGGTTAGTGGAAAAGCACT+TGG | - | tig0032298:25799-25818 | Msa1448710:intron | 40.0% |
| !! | TGGTTAGTGGAAAAGCACTT+GGG | - | tig0032298:25800-25819 | Msa1448710:intron | 40.0% |
| !! | AGTTGATAAAATTTGCGGGG+TGG | - | tig0032298:25850-25869 | Msa1448710:intron | 40.0% |
| AAGTGACACTACACTTTCAC+TGG | - | tig0032298:25882-25901 | Msa1448710:intron | 40.0% | |
| !!! | TAAGGGTATGCTGTTTTAGG+AGG | + | tig0032298:25956-25975 | None:intergenic | 40.0% |
| CCAAGGTACAAATAAGGGTA+TGG | + | tig0032298:25991-26010 | None:intergenic | 40.0% | |
| ! | CCATACCCTTATTTGTACCT+TGG | - | tig0032298:25988-26007 | Msa1448710:intron | 40.0% |
| TCACTACTGATCATGAGAAG+GGG | + | tig0032298:26087-26106 | None:intergenic | 40.0% | |
| GATCACTACTGATCATGAGA+AGG | + | tig0032298:26089-26108 | None:intergenic | 40.0% | |
| !! | CCTAGGTTTGCTTTAGAAAC+TGG | + | tig0032298:26251-26270 | None:intergenic | 40.0% |
| !! | CCAGTTTCTAAAGCAAACCT+AGG | - | tig0032298:26248-26267 | Msa1448710:intron | 40.0% |
| TGACCCTGCAAAAGATTCTT+AGG | + | tig0032298:26456-26475 | None:intergenic | 40.0% | |
| CTAATTAGGATATTGGTGGG+GGG | + | tig0032298:26486-26505 | None:intergenic | 40.0% | |
| !! | AAGATCAACGCCGATTCAGA+GGG | + | tig0032298:20953-20972 | None:intergenic | 45.0% |
| !! | AAAGATCAACGCCGATTCAG+AGG | + | tig0032298:20954-20973 | None:intergenic | 45.0% |
| !! | GAATCGGCGTTGATCTTTCT+CGG | - | tig0032298:20956-20975 | Msa1448710:three_prime_UTR | 45.0% |
| AAAATCAGATGCTCTGCGAC+AGG | + | tig0032298:21595-21614 | None:intergenic | 45.0% | |
| ! | GGCCCTTTTCTTTCTCTTCA+TGG | + | tig0032298:21668-21687 | None:intergenic | 45.0% |
| GAAGAGAAAGAAAAGGGCCA+TGG | - | tig0032298:21669-21688 | Msa1448710:intron | 45.0% | |
| !! | GTTAATTAGTGGTGGACTGG+TGG | + | tig0032298:21796-21815 | None:intergenic | 45.0% |
| TGAATTTCTTCCCAGGAGCT+GGG | + | tig0032298:21995-22014 | None:intergenic | 45.0% | |
| ATGAATTTCTTCCCAGGAGC+TGG | + | tig0032298:21996-22015 | None:intergenic | 45.0% | |
| CTCGTACATCATCCAATCCA+AGG | + | tig0032298:22256-22275 | None:intergenic | 45.0% | |
| !! | AATGCTGACTCAGGTAGATG+GGG | + | tig0032298:22319-22338 | None:intergenic | 45.0% |
| !! | GAATGCTGACTCAGGTAGAT+GGG | + | tig0032298:22320-22339 | None:intergenic | 45.0% |
| !! | TGAATGCTGACTCAGGTAGA+TGG | + | tig0032298:22321-22340 | None:intergenic | 45.0% |
| CTACCTGAGTCAGCATTCAA+TGG | - | tig0032298:22322-22341 | Msa1448710:CDS | 45.0% | |
| AAACACACAACGGTCACTAG+AGG | + | tig0032298:22355-22374 | None:intergenic | 45.0% | |
| ! | CAGTGATTGGGAAGTACACA+CGG | + | tig0032298:22839-22858 | None:intergenic | 45.0% |
| GTTCAGAAACAACGCAAGGA+AGG | - | tig0032298:23278-23297 | Msa1448710:intron | 45.0% | |
| AATACGAAGGGTTGCTCAGA+TGG | - | tig0032298:23307-23326 | Msa1448710:intron | 45.0% | |
| GATGTAGGTAATGCATGGAG+AGG | - | tig0032298:23476-23495 | Msa1448710:intron | 45.0% | |
| ATTCCCGCGAGTACAGAATA+TGG | - | tig0032298:23567-23586 | Msa1448710:intron | 45.0% | |
| !! | CGTAGTCCAATTTTGGGAGA+TGG | + | tig0032298:23640-23659 | None:intergenic | 45.0% |
| ! | GCACACTCGTAGTCCAATTT+TGG | + | tig0032298:23647-23666 | None:intergenic | 45.0% |
| GTCATTTCGAAAAGTGGAGC+TGG | - | tig0032298:23776-23795 | Msa1448710:intron | 45.0% | |
| TGTCACTCTCTCTTAAGGAG+GGG | - | tig0032298:23961-23980 | Msa1448710:intron | 45.0% | |
| TCTAGCTGTAGGAAACACCA+GGG | + | tig0032298:24026-24045 | None:intergenic | 45.0% | |
| ATCTAGCTGTAGGAAACACC+AGG | + | tig0032298:24027-24046 | None:intergenic | 45.0% | |
| TGTGCTTAGGGAAGGAATTC+CGG | - | tig0032298:25279-25298 | Msa1448710:intron | 45.0% | |
| GGATCCCTCATTCTAATCAG+CGG | - | tig0032298:25420-25439 | Msa1448710:intron | 45.0% | |
| ! | CATGCCGCTGATTAGAATGA+GGG | + | tig0032298:25427-25446 | None:intergenic | 45.0% |
| GGGTGAGTAGAAAACTGAGT+AGG | - | tig0032298:25729-25748 | Msa1448710:intron | 45.0% | |
| !! | TCACTGGCCCAGTATTTTTG+TGG | - | tig0032298:25898-25917 | Msa1448710:intron | 45.0% |
| GCTCATGATGATTATGGCCA+AGG | + | tig0032298:26008-26027 | None:intergenic | 45.0% | |
| !! | CAGCAAAACTGTTGGTTCCT+AGG | + | tig0032298:26268-26287 | None:intergenic | 45.0% |
| ! | CTAGGAACCAACAGTTTTGC+TGG | - | tig0032298:26266-26285 | Msa1448710:intron | 45.0% |
| ! | GAACCAACAGTTTTGCTGGA+AGG | - | tig0032298:26270-26289 | Msa1448710:intron | 45.0% |
| !! | TAAAAATATACATTATTATT+AGG | - | tig0032298:21493-21512 | Msa1448710:intron | 5.0% |
| ! | GCGTTGATCTTTCTCGGAAC+AGG | - | tig0032298:20962-20981 | Msa1448710:three_prime_UTR | 50.0% |
| CGGAACAGGCTGTTCAAGTA+TGG | - | tig0032298:20976-20995 | Msa1448710:three_prime_UTR | 50.0% | |
| ACGGAACAAGGAGGATCAGA+GGG | + | tig0032298:21028-21047 | None:intergenic | 50.0% | |
| AACGGAACAAGGAGGATCAG+AGG | + | tig0032298:21029-21048 | None:intergenic | 50.0% | |
| CGACAATGACTGAGCGCAAA+CGG | + | tig0032298:21047-21066 | None:intergenic | 50.0% | |
| TCAGTCATTGTCGATCCCAC+CGG | - | tig0032298:21054-21073 | Msa1448710:three_prime_UTR | 50.0% | |
| TTAGGGAGACTGTGCTTCGA+TGG | - | tig0032298:21265-21284 | Msa1448710:intron | 50.0% | |
| GAACATGCTGATGCAGTCCT+TGG | - | tig0032298:22236-22255 | Msa1448710:intron | 50.0% | |
| TGCTGATGCAGTCCTTGGAT+TGG | - | tig0032298:22241-22260 | Msa1448710:intron | 50.0% | |
| !! | ATGCTGACTCAGGTAGATGG+GGG | + | tig0032298:22318-22337 | None:intergenic | 50.0% |
| GAAAAGTGGAGCTGGACAGT+TGG | - | tig0032298:23784-23803 | Msa1448710:intron | 50.0% | |
| TGCAGAGGACTCTAACCTTC+TGG | - | tig0032298:24683-24702 | Msa1448710:intron | 50.0% | |
| !! | GGACTCTAACCTTCTGGTTC+CGG | - | tig0032298:24689-24708 | Msa1448710:intron | 50.0% |
| CCATCATGAGAAAGCTGCAC+CGG | + | tig0032298:25301-25320 | None:intergenic | 50.0% | |
| ! | GCATGCCGCTGATTAGAATG+AGG | + | tig0032298:25428-25447 | None:intergenic | 50.0% |
| CTACTGATCATGAGAAGGGG+AGG | + | tig0032298:26084-26103 | None:intergenic | 50.0% | |
| CACATGCTTTACCCTGCAAG+AGG | + | tig0032298:26162-26181 | None:intergenic | 50.0% | |
| ! | CCAACAGTTTTGCTGGAAGG+CGG | - | tig0032298:26273-26292 | Msa1448710:intron | 50.0% |
| CGGAACTCCTCCCTCTGAAT+CGG | - | tig0032298:20940-20959 | Msa1448710:three_prime_UTR | 55.0% | |
| !! | ATCAACGCCGATTCAGAGGG+AGG | + | tig0032298:20950-20969 | None:intergenic | 55.0% |
| TGAGCGCAAACGGAACAAGG+AGG | + | tig0032298:21037-21056 | None:intergenic | 55.0% | |
| GACTGAGCGCAAACGGAACA+AGG | + | tig0032298:21040-21059 | None:intergenic | 55.0% | |
| GGCGCTGTTCTGTTCTGTAC+AGG | - | tig0032298:21926-21945 | Msa1448710:intron | 55.0% | |
| TCTTACATCCTCCCAGCTCC+TGG | - | tig0032298:21981-22000 | Msa1448710:intron | 55.0% | |
| CTTACATCCTCCCAGCTCCT+GGG | - | tig0032298:21982-22001 | Msa1448710:intron | 55.0% | |
| ATTTCTTCCCAGGAGCTGGG+AGG | + | tig0032298:21992-22011 | None:intergenic | 55.0% | |
| TGACTCAGGTAGATGGGGGT+GGG | + | tig0032298:22314-22333 | None:intergenic | 55.0% | |
| CTCGAACATCCGGAACCAGA+AGG | + | tig0032298:24701-24720 | None:intergenic | 55.0% | |
| !! | CTTCTGGTTCCGGATGTTCG+AGG | - | tig0032298:24699-24718 | Msa1448710:intron | 55.0% |
| CCGGTGCAGCTTTCTCATGA+TGG | - | tig0032298:25298-25317 | Msa1448710:intron | 55.0% | |
| CCGCCTTCCAGCAAAACTGT+TGG | + | tig0032298:26276-26295 | None:intergenic | 55.0% | |
| GACGCCATGGCCACATCCAA+CGG | - | tig0032298:20908-20927 | Msa1448710:three_prime_UTR | 60.0% | |
| !! | ACATCCAACGGCACCGACGA+CGG | - | tig0032298:20920-20939 | Msa1448710:three_prime_UTR | 60.0% |
| AGAGGGAGGAGTTCCGTCGT+CGG | + | tig0032298:20936-20955 | None:intergenic | 60.0% | |
| CGTGGGACTCGCGTGTCAAA+AGG | + | tig0032298:21431-21450 | None:intergenic | 60.0% | |
| CTGACTCAGGTAGATGGGGG+TGG | + | tig0032298:22315-22334 | None:intergenic | 60.0% | |
| ! | GGGAAGTACACACGGCACAG+TGG | + | tig0032298:22831-22850 | None:intergenic | 60.0% |
| GAAGGGTTGCTCAGATGGCC+TGG | - | tig0032298:23312-23331 | Msa1448710:intron | 60.0% | |
| TCCGGATGTTCGAGGAACGC+AGG | - | tig0032298:24707-24726 | Msa1448710:intron | 60.0% | |
| GCCTGCGTTCCTCGAACATC+CGG | + | tig0032298:24711-24730 | None:intergenic | 60.0% | |
| CTGGATCTACGGCGACGCCA+TGG | - | tig0032298:20895-20914 | Msa1448710:three_prime_UTR | 65.0% | |
| !! | GGTGCCGTTGGATGTGGCCA+TGG | + | tig0032298:20915-20934 | None:intergenic | 65.0% |
| !! | GTCGTCGGTGCCGTTGGATG+TGG | + | tig0032298:20921-20940 | None:intergenic | 65.0% |
| !! | AGTTCCGTCGTCGGTGCCGT+TGG | + | tig0032298:20927-20946 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0032298 | gene | 20790 | 26629 | 20790 | ID=Msa1448710;Name=Msa1448710 |
| tig0032298 | mRNA | 20790 | 26629 | 20790 | ID=Msa1448710-mRNA-1;Parent=Msa1448710;Name=Msa1448710-mRNA-1;_AED=0.25;_eAED=0.25;_QI=124|0.87|1|1|0.87|0.88|9|424|313 |
| tig0032298 | exon | 20790 | 21250 | 20790 | ID=Msa1448710-mRNA-1:exon:16579;Parent=Msa1448710-mRNA-1 |
| tig0032298 | exon | 22306 | 22415 | 22306 | ID=Msa1448710-mRNA-1:exon:16578;Parent=Msa1448710-mRNA-1 |
| tig0032298 | exon | 22493 | 22528 | 22493 | ID=Msa1448710-mRNA-1:exon:16577;Parent=Msa1448710-mRNA-1 |
| tig0032298 | exon | 23584 | 23642 | 23584 | ID=Msa1448710-mRNA-1:exon:16576;Parent=Msa1448710-mRNA-1 |
| tig0032298 | exon | 23831 | 23936 | 23831 | ID=Msa1448710-mRNA-1:exon:16575;Parent=Msa1448710-mRNA-1 |
| tig0032298 | exon | 24019 | 24166 | 24019 | ID=Msa1448710-mRNA-1:exon:16574;Parent=Msa1448710-mRNA-1 |
| tig0032298 | exon | 25071 | 25198 | 25071 | ID=Msa1448710-mRNA-1:exon:16573;Parent=Msa1448710-mRNA-1 |
| tig0032298 | exon | 26099 | 26234 | 26099 | ID=Msa1448710-mRNA-1:exon:16572;Parent=Msa1448710-mRNA-1 |
| tig0032298 | exon | 26324 | 26629 | 26324 | ID=Msa1448710-mRNA-1:exon:16571;Parent=Msa1448710-mRNA-1 |
| tig0032298 | five_prime_UTR | 26506 | 26629 | 26506 | ID=Msa1448710-mRNA-1:five_prime_utr;Parent=Msa1448710-mRNA-1 |
| tig0032298 | CDS | 26324 | 26505 | 26324 | ID=Msa1448710-mRNA-1:cds;Parent=Msa1448710-mRNA-1 |
| tig0032298 | CDS | 26099 | 26234 | 26099 | ID=Msa1448710-mRNA-1:cds;Parent=Msa1448710-mRNA-1 |
| tig0032298 | CDS | 25071 | 25198 | 25071 | ID=Msa1448710-mRNA-1:cds;Parent=Msa1448710-mRNA-1 |
| tig0032298 | CDS | 24019 | 24166 | 24019 | ID=Msa1448710-mRNA-1:cds;Parent=Msa1448710-mRNA-1 |
| tig0032298 | CDS | 23831 | 23936 | 23831 | ID=Msa1448710-mRNA-1:cds;Parent=Msa1448710-mRNA-1 |
| tig0032298 | CDS | 23584 | 23642 | 23584 | ID=Msa1448710-mRNA-1:cds;Parent=Msa1448710-mRNA-1 |
| tig0032298 | CDS | 22493 | 22528 | 22493 | ID=Msa1448710-mRNA-1:cds;Parent=Msa1448710-mRNA-1 |
| tig0032298 | CDS | 22306 | 22415 | 22306 | ID=Msa1448710-mRNA-1:cds;Parent=Msa1448710-mRNA-1 |
| tig0032298 | CDS | 21214 | 21250 | 21214 | ID=Msa1448710-mRNA-1:cds;Parent=Msa1448710-mRNA-1 |
| tig0032298 | three_prime_UTR | 20790 | 21213 | 20790 | ID=Msa1448710-mRNA-1:three_prime_utr;Parent=Msa1448710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
