AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0244760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0244760 MtrunA17_Chr2g0285411 99.007 302 3 0 1 302 1 302 0.0 627
Msa0244760 MtrunA17_Chr8g0342441 41.053 285 144 11 15 298 58 319 4.64e-57 187
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0244760 AT1G30300.1 75.082 305 73 1 1 302 2 306 1.31e-177 494
Msa0244760 AT1G30300.3 75.082 305 73 1 1 302 2 306 1.31e-177 494
Msa0244760 AT1G30300.2 75.082 305 73 1 1 302 2 306 1.31e-177 494
Msa0244760 AT1G30300.4 75.082 305 73 1 1 302 2 306 1.31e-177 494
Msa0244760 AT4G03610.4 65.147 307 95 5 1 302 1 300 1.61e-142 405
Msa0244760 AT4G03610.2 64.460 287 90 5 1 282 1 280 4.54e-130 372
Msa0244760 AT4G03610.1 61.889 307 90 6 1 302 1 285 2.62e-129 370
Msa0244760 AT4G03610.3 66.403 253 75 4 1 250 1 246 1.95e-117 339
Msa0244760 AT3G13800.1 40.493 284 146 10 16 298 78 339 3.76e-53 178
Msa0244760 AT3G13800.4 40.493 284 146 10 16 298 78 339 3.76e-53 178
Msa0244760 AT3G13800.3 40.502 279 143 10 21 298 1 257 8.00e-52 172
Msa0244760 AT3G13800.2 40.502 279 143 10 21 298 1 257 8.00e-52 172

Find 99 sgRNAs with CRISPR-Local

Find 388 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAGAGAAGTTTCCTTATT+TGG 0.135750 2_2:+23528757 Msa0244760:CDS
GAAAGAGAGTACCTGTAATT+AGG 0.152242 2_2:-23526585 None:intergenic
TCTTTCTCTCTCATCTCTTC+TGG 0.177721 2_2:+23526376 Msa0244760:five_prime_UTR
CGTTGTTTCTGAACCAAATA+AGG 0.179452 2_2:-23528770 None:intergenic
ATATCATTTGTTGGACTAAA+AGG 0.183530 2_2:-23527785 None:intergenic
ACAGTTGGATCTTCTAATAT+TGG 0.247221 2_2:+23529300 Msa0244760:CDS
GGGCATCTTTGAAAATATTA+AGG 0.254973 2_2:-23531837 None:intergenic
CCTAGGTTTGCTTTAGAAAC+TGG 0.258915 2_2:-23531858 None:intergenic
TAATATTGGATTCATTATAT+AGG 0.272370 2_2:+23529314 Msa0244760:CDS
AAAAGATTACATCTCTAATT+AGG 0.275025 2_2:-23532106 None:intergenic
TACATCTCTAATTAGGATAT+TGG 0.285182 2_2:-23532099 None:intergenic
TTGATGTTGGCAAGACGTTT+AGG 0.306067 2_2:+23526747 Msa0244760:CDS
TTGATCTTATTTAGATTCAT+TGG 0.306717 2_2:+23531812 Msa0244760:exon
TGACCCTGCAAAAGATTCTT+AGG 0.311116 2_2:-23532063 None:intergenic
TAACTCACAGAATCGATTCT+TGG 0.317245 2_2:-23526806 None:intergenic
AATATTGGATTCATTATATA+GGG 0.318957 2_2:+23529315 Msa0244760:CDS
CAGCAAAACTGTTGGTTCCT+AGG 0.324849 2_2:-23531875 None:intergenic
AAAGAGAGTACCTGTAATTA+GGG 0.331055 2_2:-23526584 None:intergenic
CGGAACAGGCTGTTCAAGTA+TGG 0.338495 2_2:+23526476 Msa0244760:CDS
TAAATAAGATCAATTGTATA+TGG 0.347069 2_2:-23531802 None:intergenic
TGAATGCTGACTCAGGTAGA+TGG 0.349627 2_2:-23527819 None:intergenic
TGGAGAGGATTACATCTGTT+TGG 0.350777 2_2:+23528992 Msa0244760:CDS
TGATGTTGGCAAGACGTTTA+GGG 0.356782 2_2:+23526748 Msa0244760:CDS
CATGAGTCATTCCAATCAAT+AGG 0.362542 2_2:-23530544 None:intergenic
GGAGAGGATTACATCTGTTT+GGG 0.373515 2_2:+23528993 Msa0244760:CDS
GTCATCAGTGATAATGTTCC+AGG 0.377002 2_2:-23528831 None:intergenic
GCGTTGATCTTTCTCGGAAC+AGG 0.380171 2_2:+23526462 Msa0244760:CDS
TTTACAGTCATTTCGAAAAG+TGG 0.389227 2_2:+23529271 Msa0244760:intron
GAATCGGCGTTGATCTTTCT+CGG 0.402893 2_2:+23526456 Msa0244760:CDS
CCAATCAATAGGGTTTGCTT+TGG 0.405132 2_2:-23530533 None:intergenic
CGACAATGACTGAGCGCAAA+CGG 0.414803 2_2:-23526544 None:intergenic
TGATTGTTATAAATAATAAA+TGG 0.427899 2_2:+23532173 Msa0244760:three_prime_UTR
CTTATATATCTGATGTTTCA+CGG 0.432628 2_2:+23529045 Msa0244760:CDS
CCAAAGCAAACCCTATTGAT+TGG 0.435743 2_2:+23530533 Msa0244760:CDS
ATGAGTCATTCCAATCAATA+GGG 0.448438 2_2:-23530543 None:intergenic
TTCGATGGTTTGTTCATCAT+CGG 0.450026 2_2:+23526780 Msa0244760:CDS
ATTCCCGCGAGTACAGAATA+TGG 0.455050 2_2:+23529068 Msa0244760:CDS
CTAGGTTTGCTTTAGAAACT+GGG 0.456159 2_2:-23531857 None:intergenic
GTGGGATCAATATCATTTGT+TGG 0.461356 2_2:-23527794 None:intergenic
TAAAGAAGAAAGAAGAAGGA+AGG 0.465503 2_2:-23526330 None:intergenic
GAAGGGTTGCTCAGATGGCC+TGG 0.469919 2_2:+23528813 Msa0244760:CDS
AATTATATATTGATTGATGT+TGG 0.471348 2_2:+23526734 Msa0244760:CDS
CTACCTGAGTCAGCATTCAA+TGG 0.481362 2_2:+23527823 Msa0244760:CDS
GTCGTCGGTGCCGTTGGATG+TGG 0.481521 2_2:-23526418 None:intergenic
GAACATGCTGATGCAGTCCT+TGG 0.486458 2_2:+23527737 Msa0244760:CDS
GAATGCTGACTCAGGTAGAT+GGG 0.487485 2_2:-23527818 None:intergenic
AGTTCCGTCGTCGGTGCCGT+TGG 0.490322 2_2:-23526424 None:intergenic
TTGATGAGACACAGTACATT+GGG 0.499967 2_2:-23526501 None:intergenic
ATAGTGCAATTAACTGGTAA+AGG 0.503581 2_2:-23528893 None:intergenic
ATCTCTAATTAGGATATTGG+TGG 0.503723 2_2:-23532096 None:intergenic
AATACGAAGGGTTGCTCAGA+TGG 0.505761 2_2:+23528808 Msa0244760:CDS
TCTCATCTCTTCTGGATCTA+CGG 0.507309 2_2:+23526384 Msa0244760:five_prime_UTR
GACGCCATGGCCACATCCAA+CGG 0.511458 2_2:+23526408 Msa0244760:exon
AGAAGAAAGAAGAAGGAAGG+TGG 0.515530 2_2:-23526327 None:intergenic
TGCTGATGCAGTCCTTGGAT+TGG 0.516613 2_2:+23527742 Msa0244760:CDS
GTCATTTCGAAAAGTGGAGC+TGG 0.524520 2_2:+23529277 Msa0244760:intron
AAACCTGTGGAAAACAAAGA+TGG 0.525306 2_2:-23530410 None:intergenic
CGGAACTCCTCCCTCTGAAT+CGG 0.526733 2_2:+23526440 Msa0244760:CDS
TCTCTAATTAGGATATTGGT+GGG 0.528310 2_2:-23532095 None:intergenic
AAAGATCAACGCCGATTCAG+AGG 0.529103 2_2:-23526451 None:intergenic
TTAATTGATTATTGTGGAAG+CGG 0.535963 2_2:+23526701 Msa0244760:CDS
GACTGAGCGCAAACGGAACA+AGG 0.540973 2_2:-23526537 None:intergenic
GGTGCCGTTGGATGTGGCCA+TGG 0.542231 2_2:-23526412 None:intergenic
CTGGATCTACGGCGACGCCA+TGG 0.542253 2_2:+23526395 Msa0244760:exon
TTAGGGAGACTGTGCTTCGA+TGG 0.547897 2_2:+23526765 Msa0244760:CDS
CTCTAATTAGGATATTGGTG+GGG 0.550625 2_2:-23532094 None:intergenic
ACATCCAACGGCACCGACGA+CGG 0.551645 2_2:+23526420 Msa0244760:CDS
GAAAAGTGGAGCTGGACAGT+TGG 0.552369 2_2:+23529285 Msa0244760:CDS
TCTAATTAGGATATTGGTGG+GGG 0.555939 2_2:-23532093 None:intergenic
AAAAGATTCTTAGGATACAC+TGG 0.570189 2_2:-23532054 None:intergenic
ATTGATGAGACACAGTACAT+TGG 0.574414 2_2:-23526502 None:intergenic
GTTCAGAAACAACGCAAGGA+AGG 0.576002 2_2:+23528779 Msa0244760:CDS
TGAGTCAGCATTCAATGGAT+AGG 0.583236 2_2:+23527828 Msa0244760:CDS
CCGCCTTCCAGCAAAACTGT+TGG 0.583823 2_2:-23531883 None:intergenic
TATCCATTGAATGCTGACTC+AGG 0.588545 2_2:-23527826 None:intergenic
AAGATCAACGCCGATTCAGA+GGG 0.594996 2_2:-23526450 None:intergenic
TTGTGGATGTAGGTAATGCA+TGG 0.597231 2_2:+23528972 Msa0244760:intron
TCGATGTTAATTGATTATTG+TGG 0.600435 2_2:+23526695 Msa0244760:CDS
AGACTCTTGAAATTGTGAAG+AGG 0.603087 2_2:+23530504 Msa0244760:intron
ATTGATTATTGTGGAAGCGG+TGG 0.603095 2_2:+23526704 Msa0244760:CDS
TCAGTCATTGTCGATCCCAC+CGG 0.604108 2_2:+23526554 Msa0244760:CDS
ATCAACGCCGATTCAGAGGG+AGG 0.605019 2_2:-23526447 None:intergenic
ACTTGTTATATTATAGTGTG+AGG 0.605776 2_2:+23531929 Msa0244760:three_prime_UTR
AGAGGGAGGAGTTCCGTCGT+CGG 0.610126 2_2:-23526433 None:intergenic
ATACCATATTCTGTACTCGC+GGG 0.613014 2_2:-23529071 None:intergenic
ACGGAACAAGGAGGATCAGA+GGG 0.613154 2_2:-23526525 None:intergenic
AACGGAACAAGGAGGATCAG+AGG 0.614159 2_2:-23526526 None:intergenic
CTCGTACATCATCCAATCCA+AGG 0.621489 2_2:-23527754 None:intergenic
CCAGTTTCTAAAGCAAACCT+AGG 0.630294 2_2:+23531858 Msa0244760:three_prime_UTR
AGCAGAAGCAACATAGAGTG+AGG 0.632037 2_2:-23532228 None:intergenic
AGGAAGGACAAGAAATACGA+AGG 0.640963 2_2:+23528795 Msa0244760:CDS
CATACCATATTCTGTACTCG+CGG 0.641738 2_2:-23529072 None:intergenic
TTTGGTTCAGAAACAACGCA+AGG 0.660626 2_2:+23528775 Msa0244760:CDS
GGAAGGACAAGAAATACGAA+GGG 0.662583 2_2:+23528796 Msa0244760:CDS
AATGCTGACTCAGGTAGATG+GGG 0.684919 2_2:-23527817 None:intergenic
GATGTAGGTAATGCATGGAG+AGG 0.710977 2_2:+23528977 Msa0244760:intron
TCATGAGTTTGATCACCACA+AGG 0.734521 2_2:+23530562 Msa0244760:CDS
ATGCTGACTCAGGTAGATGG+GGG 0.739738 2_2:-23527816 None:intergenic
TGAGCGCAAACGGAACAAGG+AGG 0.758779 2_2:-23526534 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTAGATATTCATTATAT+AGG + chr2_2:23529381-23529400 Msa0244760:intron 10.0%
!! ATTTAGATATTCATTATATA+GGG + chr2_2:23529382-23529401 Msa0244760:intron 10.0%
!! ATTTAAACTAATTAACTAAT+CGG + chr2_2:23530321-23530340 Msa0244760:intron 10.0%
!! TGATTGTTATAAATAATAAA+TGG + chr2_2:23532173-23532192 Msa0244760:three_prime_UTR 10.0%
!!! AATTATATATTGATTGATGT+TGG + chr2_2:23526734-23526753 Msa0244760:CDS 15.0%
!! AAAATAGATAAATGACTATT+AGG + chr2_2:23526965-23526984 Msa0244760:intron 15.0%
!! ATAACTAATATTAACGATAA+TGG - chr2_2:23528014-23528033 None:intergenic 15.0%
!! TATTGTTAAAGATACATATT+GGG - chr2_2:23528151-23528170 None:intergenic 15.0%
!! TTATTGTTAAAGATACATAT+TGG - chr2_2:23528152-23528171 None:intergenic 15.0%
!! TAATATTGGATTCATTATAT+AGG + chr2_2:23529314-23529333 Msa0244760:CDS 15.0%
!! AATATTGGATTCATTATATA+GGG + chr2_2:23529315-23529334 Msa0244760:CDS 15.0%
!!! TATATTTTTCCTATTTTCAA+AGG - chr2_2:23529620-23529639 None:intergenic 15.0%
!!! TAGATGCTTTAAAAAATTTA+GGG + chr2_2:23529823-23529842 Msa0244760:intron 15.0%
!! TTTAAAAAATTTAGGGATAT+TGG + chr2_2:23529830-23529849 Msa0244760:intron 15.0%
!! TAATACTCCAATAATTAATT+GGG - chr2_2:23529999-23530018 None:intergenic 15.0%
!! TTAATACTCCAATAATTAAT+TGG - chr2_2:23530000-23530019 None:intergenic 15.0%
!!! GATTAGTTAATTAGTTTAAA+TGG - chr2_2:23530322-23530341 None:intergenic 15.0%
!! TTTAAACTAATTAACTAATC+GGG + chr2_2:23530322-23530341 Msa0244760:intron 15.0%
!!! ATATTTGACTTATTTACAAA+TGG - chr2_2:23530623-23530642 None:intergenic 15.0%
!!! TAATTTTTCACTTTTTTGTT+TGG + chr2_2:23531373-23531392 Msa0244760:intron 15.0%
!! TAAATAAGATCAATTGTATA+TGG - chr2_2:23531805-23531824 None:intergenic 15.0%
!!! ATTTTAAAGAAGAAAGAAGA+AGG - chr2_2:23526337-23526356 None:intergenic 20.0%
!! AAAAGATGAAGGATTATTAA+CGG + chr2_2:23527045-23527064 Msa0244760:intron 20.0%
!! TAGCATCAAAATATTTCTTA+AGG + chr2_2:23527195-23527214 Msa0244760:intron 20.0%
!! TCAATTTCTTTGTTAATTAG+TGG - chr2_2:23527307-23527326 None:intergenic 20.0%
!!! AGAATAAAAAACTAGTTCTT+TGG + chr2_2:23527688-23527707 Msa0244760:intron 20.0%
!!! ATCTTAAGATTTGTTTATGT+AGG - chr2_2:23527936-23527955 None:intergenic 20.0%
!!! CAATTAATGAACTTTTCATT+TGG - chr2_2:23528427-23528446 None:intergenic 20.0%
!! TTTCAATTAGTTATTGTTAC+TGG - chr2_2:23528514-23528533 None:intergenic 20.0%
!! ATCTATTTGTTTCATCATTT+AGG + chr2_2:23529181-23529200 Msa0244760:intron 20.0%
!! TCTATTTGTTTCATCATTTA+GGG + chr2_2:23529182-23529201 Msa0244760:intron 20.0%
!!! TTCTGTTGTCAATTTTTTTT+GGG + chr2_2:23529345-23529364 Msa0244760:intron 20.0%
!!! CTAAATTTTTTAAAGCATCT+AGG - chr2_2:23529824-23529843 None:intergenic 20.0%
!!! CTAGATGCTTTAAAAAATTT+AGG + chr2_2:23529822-23529841 Msa0244760:intron 20.0%
!! AATAGAACCCAATTAATTAT+TGG + chr2_2:23529989-23530008 Msa0244760:intron 20.0%
!! TTCCATTGATATTTATATAC+AGG - chr2_2:23530127-23530146 None:intergenic 20.0%
!!! TAAAAATAGAAGCTTGTTTT+TGG - chr2_2:23530249-23530268 None:intergenic 20.0%
!! GATAGGATATATAAACTATA+GGG - chr2_2:23530279-23530298 None:intergenic 20.0%
!! TGATAGGATATATAAACTAT+AGG - chr2_2:23530280-23530299 None:intergenic 20.0%
!!! AGTTAATTAGTTTAAATGGT+TGG - chr2_2:23530318-23530337 None:intergenic 20.0%
!! GGTGGTAAAATATTATTAAT+TGG + chr2_2:23530472-23530491 Msa0244760:intron 20.0%
!! GATGAAAAAAATGATGATTT+GGG - chr2_2:23530874-23530893 None:intergenic 20.0%
!! TGATGAAAAAAATGATGATT+TGG - chr2_2:23530875-23530894 None:intergenic 20.0%
!!! ATCATTTTTTTCATCATGAA+CGG + chr2_2:23530879-23530898 Msa0244760:intron 20.0%
!!! TCGTTTTTTCTTGATATTAT+TGG + chr2_2:23530965-23530984 Msa0244760:intron 20.0%
!!! ATTGAAGTTGATAAAATTTG+CGG + chr2_2:23531458-23531477 Msa0244760:intron 20.0%
!!! TTGATCTTATTTAGATTCAT+TGG + chr2_2:23531812-23531831 Msa0244760:exon 20.0%
!! AAAAGATTACATCTCTAATT+AGG - chr2_2:23532109-23532128 None:intergenic 20.0%
! TCGATGTTAATTGATTATTG+TGG + chr2_2:23526695-23526714 Msa0244760:CDS 25.0%
! TTAATTGATTATTGTGGAAG+CGG + chr2_2:23526701-23526720 Msa0244760:CDS 25.0%
! AAAGATGAAGGATTATTAAC+GGG + chr2_2:23527046-23527065 Msa0244760:intron 25.0%
! ATTTCTTTGTTAATTAGTGG+TGG - chr2_2:23527304-23527323 None:intergenic 25.0%
!! ATGGCAACTAGAAATTTTAA+GGG - chr2_2:23527381-23527400 None:intergenic 25.0%
!! AATGGCAACTAGAAATTTTA+AGG - chr2_2:23527382-23527401 None:intergenic 25.0%
!!! TTAAAATTTCTAGTTGCCAT+TGG + chr2_2:23527381-23527400 Msa0244760:intron 25.0%
!! CATTTTGTAATCTGATTCTA+TGG + chr2_2:23527406-23527425 Msa0244760:intron 25.0%
! AGACAAAAGGAAGAAAATTT+AGG - chr2_2:23527620-23527639 None:intergenic 25.0%
!! AATTTTCTTCCTTTTGTCTA+CGG + chr2_2:23527621-23527640 Msa0244760:intron 25.0%
!! ATATCATTTGTTGGACTAAA+AGG - chr2_2:23527788-23527807 None:intergenic 25.0%
! TTACATATCAAAACACACAA+CGG - chr2_2:23527866-23527885 None:intergenic 25.0%
! CTTACTTAAACTAAAAGTTC+TGG + chr2_2:23528038-23528057 Msa0244760:intron 25.0%
!!! CTTTTAAGAGCATTTATCTA+GGG - chr2_2:23528079-23528098 None:intergenic 25.0%
!!! TCTTTTAAGAGCATTTATCT+AGG - chr2_2:23528080-23528099 None:intergenic 25.0%
! AAAAGATATAGATAAGCACA+TGG + chr2_2:23528094-23528113 Msa0244760:intron 25.0%
!! ATTTTTGTTGAAGTTCTTTG+TGG + chr2_2:23528117-23528136 Msa0244760:intron 25.0%
!!! GGTATTGAATTTTTCTAGTA+TGG - chr2_2:23528462-23528481 None:intergenic 25.0%
!!! TTTGATTTTTGGACAAGTTT+TGG - chr2_2:23528558-23528577 None:intergenic 25.0%
!!! GTTCTGCTAAATTTGATTTT+TGG - chr2_2:23528569-23528588 None:intergenic 25.0%
! AAATTTAGCAGAACAATACT+AGG + chr2_2:23528575-23528594 Msa0244760:intron 25.0%
! AAAAAGATAGTGCAATTAAC+TGG - chr2_2:23528902-23528921 None:intergenic 25.0%
!! AGTAAAGCATTCTTAATACA+AGG - chr2_2:23528925-23528944 None:intergenic 25.0%
! CTTATATATCTGATGTTTCA+CGG + chr2_2:23529045-23529064 Msa0244760:CDS 25.0%
! CTATTTGTTTCATCATTTAG+GGG + chr2_2:23529183-23529202 Msa0244760:intron 25.0%
! TATTTGTTTCATCATTTAGG+GGG + chr2_2:23529184-23529203 Msa0244760:intron 25.0%
!! TTTTCGAAATGACTGTAAAA+AGG - chr2_2:23529270-23529289 None:intergenic 25.0%
!!! GTTCTGTTGTCAATTTTTTT+TGG + chr2_2:23529344-23529363 Msa0244760:intron 25.0%
! TGTATGAGAAAAACGAAATA+TGG - chr2_2:23529715-23529734 None:intergenic 25.0%
!! AAGTAACTTGACTTTTCTAT+CGG - chr2_2:23529886-23529905 None:intergenic 25.0%
! CATTTATCAATGAGAAAGTA+AGG - chr2_2:23529964-23529983 None:intergenic 25.0%
!! GTAATGGAATATAGTGAATT+TGG + chr2_2:23530036-23530055 Msa0244760:intron 25.0%
! TTGATAGAAAATATCTGCTA+TGG + chr2_2:23530100-23530119 Msa0244760:intron 25.0%
! GTCCTGTATATAAATATCAA+TGG + chr2_2:23530122-23530141 Msa0244760:intron 25.0%
!!! GTTATTTCTTCATAGATGAT+AGG - chr2_2:23530296-23530315 None:intergenic 25.0%
! AAAAATACATAACATACCAG+AGG - chr2_2:23530732-23530751 None:intergenic 25.0%
! TCACCTTACTATAAGTTTAT+GGG - chr2_2:23530836-23530855 None:intergenic 25.0%
!! ATGCACATTTTACAAAATCA+GGG - chr2_2:23531007-23531026 None:intergenic 25.0%
!! AATGCACATTTTACAAAATC+AGG - chr2_2:23531008-23531027 None:intergenic 25.0%
!!! ATTGTGTTGATTGACATTTA+TGG + chr2_2:23531033-23531052 Msa0244760:intron 25.0%
!! TTTTTGCTTATATTAGTGAC+CGG - chr2_2:23531300-23531319 None:intergenic 25.0%
!!! TTGAAGTTGATAAAATTTGC+GGG + chr2_2:23531459-23531478 Msa0244760:intron 25.0%
! AAGATTACGTAATAATGGTT+AGG - chr2_2:23531539-23531558 None:intergenic 25.0%
! TATGGCTAAAGTACAAATAA+GGG - chr2_2:23531583-23531602 None:intergenic 25.0%
! ATTTATGCTCATGATGATTA+TGG - chr2_2:23531624-23531643 None:intergenic 25.0%
!!! ACTTGTTATATTATAGTGTG+AGG + chr2_2:23531929-23531948 Msa0244760:three_prime_UTR 25.0%
!! TGAGGAAATCTTGATTTTTA+TGG + chr2_2:23531947-23531966 Msa0244760:three_prime_UTR 25.0%
! TACATCTCTAATTAGGATAT+TGG - chr2_2:23532102-23532121 None:intergenic 25.0%
TAAAGAAGAAAGAAGAAGGA+AGG - chr2_2:23526333-23526352 None:intergenic 30.0%
!! AAAGAGAGTACCTGTAATTA+GGG - chr2_2:23526587-23526606 None:intergenic 30.0%
TTGAAGCTTGATTTAGTGAT+TGG + chr2_2:23526885-23526904 Msa0244760:intron 30.0%
! TTTTATGAAAAGTTGCTCGT+GGG - chr2_2:23526948-23526967 None:intergenic 30.0%
! TTTTTATGAAAAGTTGCTCG+TGG - chr2_2:23526949-23526968 None:intergenic 30.0%
ATTTCATTTCAGATGTATGC+TGG + chr2_2:23527123-23527142 Msa0244760:intron 30.0%
!!! ATATTTTGATGCTATAGCCA+TGG - chr2_2:23527189-23527208 None:intergenic 30.0%
! TAATGTTGTCATTTCTGTGT+TGG + chr2_2:23527228-23527247 Msa0244760:intron 30.0%
!! TTCTGTGTTGGTTATAAAAC+TGG + chr2_2:23527240-23527259 Msa0244760:intron 30.0%
! TGTTGGTTATAAAACTGGTA+AGG + chr2_2:23527245-23527264 Msa0244760:intron 30.0%
! TGGCAACTAGAAATTTTAAG+GGG - chr2_2:23527380-23527399 None:intergenic 30.0%
CAGATTACAAAATGAACCAA+TGG - chr2_2:23527400-23527419 None:intergenic 30.0%
TGACATGATATTCAAGAACA+TGG + chr2_2:23527572-23527591 Msa0244760:intron 30.0%
TCAGGTCAATTCAAATTTCA+AGG - chr2_2:23527653-23527672 None:intergenic 30.0%
TCTCAAAGACTGAAAATTTC+AGG - chr2_2:23527671-23527690 None:intergenic 30.0%
ATGTAGGTTTCGAAAATAGA+GGG - chr2_2:23527920-23527939 None:intergenic 30.0%
TATGTAGGTTTCGAAAATAG+AGG - chr2_2:23527921-23527940 None:intergenic 30.0%
! TCTGAGACTATTTGATAGTT+AGG - chr2_2:23527978-23527997 None:intergenic 30.0%
TCACTTACCAATCTGTTAAA+AGG + chr2_2:23528188-23528207 Msa0244760:intron 30.0%
!! TAAGGTACCTTTTAACAGAT+TGG - chr2_2:23528198-23528217 None:intergenic 30.0%
TAGAGCAACATTGATCAATA+AGG - chr2_2:23528216-23528235 None:intergenic 30.0%
TATAATTCTGTTGATATCCC+AGG + chr2_2:23528262-23528281 Msa0244760:intron 30.0%
AATACTGCACATAATATCCT+GGG - chr2_2:23528282-23528301 None:intergenic 30.0%
AACTCAGATGCTTGTATATT+TGG + chr2_2:23528360-23528379 Msa0244760:intron 30.0%
!!! TTTTTGGACAAGTTTTGGTT+TGG - chr2_2:23528553-23528572 None:intergenic 30.0%
ACACATGCTCAAAATATAAC+TGG - chr2_2:23528604-23528623 None:intergenic 30.0%
ATCATAATTCAAGCTGAGAT+AGG - chr2_2:23528659-23528678 None:intergenic 30.0%
! CACCTTTTCTTTGATTGTAT+GGG + chr2_2:23528680-23528699 Msa0244760:intron 30.0%
!!! TGTTGCAAAGTTTTAAACCA+TGG - chr2_2:23528733-23528752 None:intergenic 30.0%
AGAAGAGAAGTTTCCTTATT+TGG + chr2_2:23528757-23528776 Msa0244760:CDS 30.0%
TTCAATCCTGATGCAAAAAA+TGG - chr2_2:23528866-23528885 None:intergenic 30.0%
ATAGTGCAATTAACTGGTAA+AGG - chr2_2:23528896-23528915 None:intergenic 30.0%
!!! TTACTGTTTTTTGTGGATGT+AGG + chr2_2:23528962-23528981 Msa0244760:intron 30.0%
!! ATCTGTTTGGGATTTCTTTT+TGG + chr2_2:23529005-23529024 Msa0244760:CDS 30.0%
!! TCTTTTTGGTGAGAAAAGTA+AGG + chr2_2:23529019-23529038 Msa0244760:CDS 30.0%
TTTACAGTCATTTCGAAAAG+TGG + chr2_2:23529271-23529290 Msa0244760:intron 30.0%
ACAGTTGGATCTTCTAATAT+TGG + chr2_2:23529300-23529319 Msa0244760:CDS 30.0%
!!! CTATGTGTTATTTTGCTTAG+TGG + chr2_2:23529557-23529576 Msa0244760:intron 30.0%
! TAGCACAAACCTTTGAAAAT+AGG + chr2_2:23529608-23529627 Msa0244760:intron 30.0%
TACTTGTTCAATAACATGAC+TGG + chr2_2:23529756-23529775 Msa0244760:intron 30.0%
! AGTAACTTGACTTTTCTATC+GGG - chr2_2:23529885-23529904 None:intergenic 30.0%
CCATTACGCATTTATGATAA+TGG - chr2_2:23530023-23530042 None:intergenic 30.0%
CCATTATCATAAATGCGTAA+TGG + chr2_2:23530020-23530039 Msa0244760:intron 30.0%
ATTTGGTCATAAGTGTGTAA+TGG + chr2_2:23530053-23530072 Msa0244760:intron 30.0%
! GTGTGTAATGGAATATAGAA+AGG + chr2_2:23530065-23530084 Msa0244760:intron 30.0%
GGAATACAAGATCATAAATG+AGG + chr2_2:23530143-23530162 Msa0244760:intron 30.0%
!!! AGAAGCTTGTTTTTGGTTTA+GGG - chr2_2:23530242-23530261 None:intergenic 30.0%
!!! TAGAAGCTTGTTTTTGGTTT+AGG - chr2_2:23530243-23530262 None:intergenic 30.0%
CAAAATTGAAAACAAACCTG+TGG - chr2_2:23530426-23530445 None:intergenic 30.0%
ATGAGTCATTCCAATCAATA+GGG - chr2_2:23530546-23530565 None:intergenic 30.0%
!! ACAATGAGTTTTTGAAAGAG+TGG + chr2_2:23530585-23530604 Msa0244760:CDS 30.0%
ATTTACAAATGGATACCTTC+TGG - chr2_2:23530612-23530631 None:intergenic 30.0%
TATTTATCATTGTACTCCTC+TGG + chr2_2:23530713-23530732 Msa0244760:intron 30.0%
CACCTTACTATAAGTTTATG+GGG - chr2_2:23530835-23530854 None:intergenic 30.0%
CTCACCTTACTATAAGTTTA+TGG - chr2_2:23530837-23530856 None:intergenic 30.0%
CATAAACTTATAGTAAGGTG+AGG + chr2_2:23530835-23530854 Msa0244760:intron 30.0%
! AAAAAATGATGATTTGGGTC+AGG - chr2_2:23530869-23530888 None:intergenic 30.0%
GTACATAGAGAAGTAGAATA+TGG + chr2_2:23530901-23530920 Msa0244760:intron 30.0%
TATCAAGAAAAAACGAGACA+TGG - chr2_2:23530961-23530980 None:intergenic 30.0%
TTGTGTAGTGATTGACATTT+AGG + chr2_2:23531127-23531146 Msa0244760:intron 30.0%
TGTGTAGTGATTGACATTTA+GGG + chr2_2:23531128-23531147 Msa0244760:intron 30.0%
!! TGAAGTTGATAAAATTTGCG+GGG + chr2_2:23531460-23531479 Msa0244760:intron 30.0%
TTAGGAACCACAAAAATACT+GGG - chr2_2:23531521-23531540 None:intergenic 30.0%
GCACAAAGATTACGTAATAA+TGG - chr2_2:23531544-23531563 None:intergenic 30.0%
!!! AAATAAGGGTATGCTGTTTT+AGG - chr2_2:23531569-23531588 None:intergenic 30.0%
GTATGGCTAAAGTACAAATA+AGG - chr2_2:23531584-23531603 None:intergenic 30.0%
! TGTATTATTTTCCTCTTGCA+GGG + chr2_2:23531758-23531777 Msa0244760:intron 30.0%
! GGGCATCTTTGAAAATATTA+AGG - chr2_2:23531840-23531859 None:intergenic 30.0%
AAAAGATTCTTAGGATACAC+TGG - chr2_2:23532057-23532076 None:intergenic 30.0%
! TATCCTAAGAATCTTTTGCA+GGG + chr2_2:23532060-23532079 Msa0244760:three_prime_UTR 30.0%
TCTCTAATTAGGATATTGGT+GGG - chr2_2:23532098-23532117 None:intergenic 30.0%
ATCTCTAATTAGGATATTGG+TGG - chr2_2:23532099-23532118 None:intergenic 30.0%
TTGATGAGACACAGTACATT+GGG - chr2_2:23526504-23526523 None:intergenic 35.0%
ATTGATGAGACACAGTACAT+TGG - chr2_2:23526505-23526524 None:intergenic 35.0%
! CTGTAATTAGGGTTTTTCTC+CGG - chr2_2:23526576-23526595 None:intergenic 35.0%
!! GAAAGAGAGTACCTGTAATT+AGG - chr2_2:23526588-23526607 None:intergenic 35.0%
! TTGATGTGATGTTCGTTTTG+TGG + chr2_2:23526654-23526673 Msa0244760:intron 35.0%
! TGTTCGTTTTGTGGATTTGT+AGG + chr2_2:23526663-23526682 Msa0244760:intron 35.0%
!! TTCGATGGTTTGTTCATCAT+CGG + chr2_2:23526780-23526799 Msa0244760:CDS 35.0%
! TAACTCACAGAATCGATTCT+TGG - chr2_2:23526809-23526828 None:intergenic 35.0%
TCCAACAAGTCAAAAGATGA+AGG + chr2_2:23527034-23527053 Msa0244760:intron 35.0%
!!! TCCTTCATCTTTTGACTTGT+TGG - chr2_2:23527038-23527057 None:intergenic 35.0%
CAGGATGAAATCATAAGAGT+TGG + chr2_2:23527069-23527088 Msa0244760:intron 35.0%
!! GCAGAGCATCTGATTTTTAA+GGG + chr2_2:23527098-23527117 Msa0244760:intron 35.0%
TTTCAGATGTATGCTGGTAA+AGG + chr2_2:23527129-23527148 Msa0244760:intron 35.0%
TATGCTGGTAAAGGTTTCTA+GGG + chr2_2:23527138-23527157 Msa0244760:intron 35.0%
ATGCCATGAAGAGAAAGAAA+AGG + chr2_2:23527162-23527181 Msa0244760:intron 35.0%
TGCCATGAAGAGAAAGAAAA+GGG + chr2_2:23527163-23527182 Msa0244760:intron 35.0%
!! TTTGTTAATTAGTGGTGGAC+TGG - chr2_2:23527299-23527318 None:intergenic 35.0%
CCTAAAATGAATTTCTTCCC+AGG - chr2_2:23527503-23527522 None:intergenic 35.0%
! CCTGGGAAGAAATTCATTTT+AGG + chr2_2:23527500-23527519 Msa0244760:intron 35.0%
GTGGGATCAATATCATTTGT+TGG - chr2_2:23527797-23527816 None:intergenic 35.0%
CAATACTGCACATAATATCC+TGG - chr2_2:23528283-23528302 None:intergenic 35.0%
! GTGCTTACTGCTTTAGATTT+GGG - chr2_2:23528489-23528508 None:intergenic 35.0%
! TGTGCTTACTGCTTTAGATT+TGG - chr2_2:23528490-23528509 None:intergenic 35.0%
!!! GGTTTGGCTTTTGTTTTTAC+TGG - chr2_2:23528537-23528556 None:intergenic 35.0%
! CATTGCAATCTATGGGTTAA+GGG - chr2_2:23528631-23528650 None:intergenic 35.0%
! ACATTGCAATCTATGGGTTA+AGG - chr2_2:23528632-23528651 None:intergenic 35.0%
! GCACCTTTTCTTTGATTGTA+TGG + chr2_2:23528679-23528698 Msa0244760:intron 35.0%
AGCCCATACAATCAAAGAAA+AGG - chr2_2:23528685-23528704 None:intergenic 35.0%
! ATTCAACTACTTGAGAGCAT+AGG - chr2_2:23528710-23528729 None:intergenic 35.0%
!! CGTTGTTTCTGAACCAAATA+AGG - chr2_2:23528773-23528792 None:intergenic 35.0%
!!! AATCAGCCATTTTTTGCATC+AGG + chr2_2:23528857-23528876 Msa0244760:CDS 35.0%
! TGCTTTACTCCTTTTATACG+AGG + chr2_2:23528936-23528955 Msa0244760:intron 35.0%
CAGTAAAGTCCTCGTATAAA+AGG - chr2_2:23528948-23528967 None:intergenic 35.0%
!!! GAGGACTTTACTGTTTTTTG+TGG + chr2_2:23528955-23528974 Msa0244760:intron 35.0%
! TTTTGGTGAGAAAAGTAAGG+TGG + chr2_2:23529022-23529041 Msa0244760:CDS 35.0%
! ATTTGAAATACCTTCGTGCT+TGG + chr2_2:23529095-23529114 Msa0244760:intron 35.0%
!! TTCTCAGCATGCTTTATTTC+TGG + chr2_2:23529410-23529429 Msa0244760:intron 35.0%
CTTAATGTCACTCTCTCTTA+AGG + chr2_2:23529457-23529476 Msa0244760:intron 35.0%
GTTGAATCAAATCTAGCTGT+AGG - chr2_2:23529538-23529557 None:intergenic 35.0%
AAGAGACACTATAGTCTATC+AGG - chr2_2:23529671-23529690 None:intergenic 35.0%
TTCAATAACATGACTGGAGA+AGG + chr2_2:23529762-23529781 Msa0244760:intron 35.0%
CACACTGAGTAATCATCTAA+TGG - chr2_2:23529788-23529807 None:intergenic 35.0%
! TAACTTGACTTTTCTATCGG+GGG - chr2_2:23529883-23529902 None:intergenic 35.0%
! GTAACTTGACTTTTCTATCG+GGG - chr2_2:23529884-23529903 None:intergenic 35.0%
AAACCTGTGGAAAACAAAGA+TGG - chr2_2:23530413-23530432 None:intergenic 35.0%
TGAATGTTACACTATCTCAC+TGG + chr2_2:23530451-23530470 Msa0244760:intron 35.0%
AGACTCTTGAAATTGTGAAG+AGG + chr2_2:23530504-23530523 Msa0244760:intron 35.0%
CATGAGTCATTCCAATCAAT+AGG - chr2_2:23530547-23530566 None:intergenic 35.0%
TCAAAAACTCATTGTCCTTG+TGG - chr2_2:23530580-23530599 None:intergenic 35.0%
CATGCTACTATCAGATTGTT+GGG - chr2_2:23530678-23530697 None:intergenic 35.0%
TCATGCTACTATCAGATTGT+TGG - chr2_2:23530679-23530698 None:intergenic 35.0%
ACTCTTCTATGAATGTGCTT+AGG + chr2_2:23530768-23530787 Msa0244760:intron 35.0%
CTCTTCTATGAATGTGCTTA+GGG + chr2_2:23530769-23530788 Msa0244760:intron 35.0%
GTCCCCATAAACTTATAGTA+AGG + chr2_2:23530830-23530849 Msa0244760:intron 35.0%
ATTTATGGTGTGTTTGCATG+TGG + chr2_2:23531048-23531067 Msa0244760:intron 35.0%
TGTGGAGATAAATAGTGAGT+AGG + chr2_2:23531066-23531085 Msa0244760:intron 35.0%
ATAGTGAGTAGGTATGAAGT+TGG + chr2_2:23531077-23531096 Msa0244760:intron 35.0%
TAGTGAGTAGGTATGAAGTT+GGG + chr2_2:23531078-23531097 Msa0244760:intron 35.0%
! ATTTAGGGTGTGTTTGTATG+TGG + chr2_2:23531143-23531162 Msa0244760:intron 35.0%
TTGCTTATATTAGTGACCAG+AGG + chr2_2:23531303-23531322 Msa0244760:intron 35.0%
TGCTTATATTAGTGACCAGA+GGG + chr2_2:23531304-23531323 Msa0244760:intron 35.0%
! TGGTTAGTTGAAAAGTTGCT+TGG + chr2_2:23531393-23531412 Msa0244760:intron 35.0%
TTGAAAAGTTGCTTGGTTAG+TGG + chr2_2:23531400-23531419 Msa0244760:intron 35.0%
GTTAGGAACCACAAAAATAC+TGG - chr2_2:23531522-23531541 None:intergenic 35.0%
TATGGCCAAGGTACAAATAA+GGG - chr2_2:23531606-23531625 None:intergenic 35.0%
TTATGGCCAAGGTACAAATA+AGG - chr2_2:23531607-23531626 None:intergenic 35.0%
ATCACTACTGATCATGAGAA+GGG - chr2_2:23531698-23531717 None:intergenic 35.0%
! CTGTATTATTTTCCTCTTGC+AGG + chr2_2:23531757-23531776 Msa0244760:intron 35.0%
!! CTAGGTTTGCTTTAGAAACT+GGG - chr2_2:23531860-23531879 None:intergenic 35.0%
! GTATCCTAAGAATCTTTTGC+AGG + chr2_2:23532059-23532078 Msa0244760:three_prime_UTR 35.0%
TCTAATTAGGATATTGGTGG+GGG - chr2_2:23532096-23532115 None:intergenic 35.0%
CTCTAATTAGGATATTGGTG+GGG - chr2_2:23532097-23532116 None:intergenic 35.0%
AGAAGAAAGAAGAAGGAAGG+TGG - chr2_2:23526330-23526349 None:intergenic 40.0%
TCTTTCTCTCTCATCTCTTC+TGG + chr2_2:23526376-23526395 Msa0244760:five_prime_UTR 40.0%
TCTCATCTCTTCTGGATCTA+CGG + chr2_2:23526384-23526403 Msa0244760:five_prime_UTR 40.0%
! AATTAGGGTTTTTCTCCGGT+GGG - chr2_2:23526572-23526591 None:intergenic 40.0%
! TAATTAGGGTTTTTCTCCGG+TGG - chr2_2:23526573-23526592 None:intergenic 40.0%
CGGAGAAAAACCCTAATTAC+AGG + chr2_2:23526574-23526593 Msa0244760:CDS 40.0%
ATTGATTATTGTGGAAGCGG+TGG + chr2_2:23526704-23526723 Msa0244760:CDS 40.0%
TTGATGTTGGCAAGACGTTT+AGG + chr2_2:23526747-23526766 Msa0244760:CDS 40.0%
TGATGTTGGCAAGACGTTTA+GGG + chr2_2:23526748-23526767 Msa0244760:CDS 40.0%
! ATGAAGGATTATTAACGGGC+AGG + chr2_2:23527050-23527069 Msa0244760:intron 40.0%
!! CGCAGAGCATCTGATTTTTA+AGG + chr2_2:23527097-23527116 Msa0244760:intron 40.0%
GTATGCTGGTAAAGGTTTCT+AGG + chr2_2:23527137-23527156 Msa0244760:intron 40.0%
!! AATTTTAAGGGGTTCTGCTC+TGG - chr2_2:23527369-23527388 None:intergenic 40.0%
AGGAACATACCGTAGACAAA+AGG - chr2_2:23527633-23527652 None:intergenic 40.0%
!! TATCCATTGAATGCTGACTC+AGG - chr2_2:23527829-23527848 None:intergenic 40.0%
TGAGTCAGCATTCAATGGAT+AGG + chr2_2:23527828-23527847 Msa0244760:CDS 40.0%
AGCATCTGAGTTCAGTGATT+GGG - chr2_2:23528352-23528371 None:intergenic 40.0%
AAGCATCTGAGTTCAGTGAT+TGG - chr2_2:23528353-23528372 None:intergenic 40.0%
! ACTGCTTTAGATTTGGGACT+TGG - chr2_2:23528483-23528502 None:intergenic 40.0%
GGAGTCACATTGCAATCTAT+GGG - chr2_2:23528638-23528657 None:intergenic 40.0%
AGGAGTCACATTGCAATCTA+TGG - chr2_2:23528639-23528658 None:intergenic 40.0%
CTCTCAAGTAGTTGAATCCA+TGG + chr2_2:23528713-23528732 Msa0244760:intron 40.0%
! TTTGGTTCAGAAACAACGCA+AGG + chr2_2:23528775-23528794 Msa0244760:CDS 40.0%
AGGAAGGACAAGAAATACGA+AGG + chr2_2:23528795-23528814 Msa0244760:CDS 40.0%
GGAAGGACAAGAAATACGAA+GGG + chr2_2:23528796-23528815 Msa0244760:CDS 40.0%
! GTCATCAGTGATAATGTTCC+AGG - chr2_2:23528834-23528853 None:intergenic 40.0%
TTGTGGATGTAGGTAATGCA+TGG + chr2_2:23528972-23528991 Msa0244760:intron 40.0%
TGGAGAGGATTACATCTGTT+TGG + chr2_2:23528992-23529011 Msa0244760:CDS 40.0%
GGAGAGGATTACATCTGTTT+GGG + chr2_2:23528993-23529012 Msa0244760:CDS 40.0%
ATACCATATTCTGTACTCGC+GGG - chr2_2:23529074-23529093 None:intergenic 40.0%
CATACCATATTCTGTACTCG+CGG - chr2_2:23529075-23529094 None:intergenic 40.0%
ATACATATGTCCAAGCACGA+AGG - chr2_2:23529108-23529127 None:intergenic 40.0%
TCAGTTCCATCTCCCAAAAT+TGG + chr2_2:23529132-23529151 Msa0244760:intron 40.0%
! CACACTCGTAGTCCAATTTT+GGG - chr2_2:23529147-23529166 None:intergenic 40.0%
AATGTCACTCTCTCTTAAGG+AGG + chr2_2:23529460-23529479 Msa0244760:intron 40.0%
ATGTCACTCTCTCTTAAGGA+GGG + chr2_2:23529461-23529480 Msa0244760:intron 40.0%
TAAACTGCTTCTTACTTCCC+TGG + chr2_2:23529507-23529526 Msa0244760:intron 40.0%
! AACTTGACTTTTCTATCGGG+GGG - chr2_2:23529882-23529901 None:intergenic 40.0%
TAAATGAGGAGCAAGAGACA+AGG + chr2_2:23530157-23530176 Msa0244760:intron 40.0%
AAGAGACAAGGATATTGCAG+AGG + chr2_2:23530169-23530188 Msa0244760:intron 40.0%
!! TTTTGTGTGTCACTACAGAC+TGG + chr2_2:23530375-23530394 Msa0244760:intron 40.0%
!!! TGTCCATCTTTGTTTTCCAC+AGG + chr2_2:23530407-23530426 Msa0244760:CDS 40.0%
ATGTTACACTATCTCACTGG+TGG + chr2_2:23530454-23530473 Msa0244760:intron 40.0%
! CCAATCAATAGGGTTTGCTT+TGG - chr2_2:23530536-23530555 None:intergenic 40.0%
CCAAAGCAAACCCTATTGAT+TGG + chr2_2:23530533-23530552 Msa0244760:CDS 40.0%
TCATGAGTTTGATCACCACA+AGG + chr2_2:23530562-23530581 Msa0244760:CDS 40.0%
!! TTTTGAAAGAGTGGTCCAGA+AGG + chr2_2:23530594-23530613 Msa0244760:CDS 40.0%
TCTATGAATGTGCTTAGGGA+AGG + chr2_2:23530773-23530792 Msa0244760:intron 40.0%
! AATGATGATTTGGGTCAGGA+GGG - chr2_2:23530865-23530884 None:intergenic 40.0%
! AAATGATGATTTGGGTCAGG+AGG - chr2_2:23530866-23530885 None:intergenic 40.0%
TAAATAGTGAGTACACCCTC+CGG + chr2_2:23531169-23531188 Msa0244760:intron 40.0%
TGCTTATATTAGTGACCGGA+GGG - chr2_2:23531187-23531206 None:intergenic 40.0%
TTGCTTATATTAGTGACCGG+AGG - chr2_2:23531188-23531207 None:intergenic 40.0%
!! TGGTTAGTGGAAAAGCACTT+AGG + chr2_2:23531413-23531432 Msa0244760:intron 40.0%
!! AGTTGATAAAATTTGCGGGG+TGG + chr2_2:23531463-23531482 Msa0244760:intron 40.0%
AAGTGACACTACACTTTCAC+TGG + chr2_2:23531495-23531514 Msa0244760:intron 40.0%
!!! TAAGGGTATGCTGTTTTAGG+AGG - chr2_2:23531566-23531585 None:intergenic 40.0%
CCAAGGTACAAATAAGGGTA+TGG - chr2_2:23531601-23531620 None:intergenic 40.0%
! CCATACCCTTATTTGTACCT+TGG + chr2_2:23531598-23531617 Msa0244760:intron 40.0%
TCACTACTGATCATGAGAAG+GGG - chr2_2:23531697-23531716 None:intergenic 40.0%
GATCACTACTGATCATGAGA+AGG - chr2_2:23531699-23531718 None:intergenic 40.0%
!! CCTAGGTTTGCTTTAGAAAC+TGG - chr2_2:23531861-23531880 None:intergenic 40.0%
!! CCAGTTTCTAAAGCAAACCT+AGG + chr2_2:23531858-23531877 Msa0244760:three_prime_UTR 40.0%
TGACCCTGCAAAAGATTCTT+AGG - chr2_2:23532066-23532085 None:intergenic 40.0%
!! AAGATCAACGCCGATTCAGA+GGG - chr2_2:23526453-23526472 None:intergenic 45.0%
!! AAAGATCAACGCCGATTCAG+AGG - chr2_2:23526454-23526473 None:intergenic 45.0%
!! GAATCGGCGTTGATCTTTCT+CGG + chr2_2:23526456-23526475 Msa0244760:CDS 45.0%
AAAATCAGATGCTCTGCGAC+AGG - chr2_2:23527095-23527114 None:intergenic 45.0%
! GGCCCTTTTCTTTCTCTTCA+TGG - chr2_2:23527168-23527187 None:intergenic 45.0%
GAAGAGAAAGAAAAGGGCCA+TGG + chr2_2:23527169-23527188 Msa0244760:intron 45.0%
TGAATTTCTTCCCAGGAGCT+GGG - chr2_2:23527496-23527515 None:intergenic 45.0%
ATGAATTTCTTCCCAGGAGC+TGG - chr2_2:23527497-23527516 None:intergenic 45.0%
CTCGTACATCATCCAATCCA+AGG - chr2_2:23527757-23527776 None:intergenic 45.0%
!! AATGCTGACTCAGGTAGATG+GGG - chr2_2:23527820-23527839 None:intergenic 45.0%
!! GAATGCTGACTCAGGTAGAT+GGG - chr2_2:23527821-23527840 None:intergenic 45.0%
!! TGAATGCTGACTCAGGTAGA+TGG - chr2_2:23527822-23527841 None:intergenic 45.0%
CTACCTGAGTCAGCATTCAA+TGG + chr2_2:23527823-23527842 Msa0244760:CDS 45.0%
AAACACACAACGGTCACTAG+AGG - chr2_2:23527856-23527875 None:intergenic 45.0%
! CAGTGATTGGGAAGTACACA+CGG - chr2_2:23528340-23528359 None:intergenic 45.0%
GTTCAGAAACAACGCAAGGA+AGG + chr2_2:23528779-23528798 Msa0244760:CDS 45.0%
AATACGAAGGGTTGCTCAGA+TGG + chr2_2:23528808-23528827 Msa0244760:CDS 45.0%
GATGTAGGTAATGCATGGAG+AGG + chr2_2:23528977-23528996 Msa0244760:intron 45.0%
ATTCCCGCGAGTACAGAATA+TGG + chr2_2:23529068-23529087 Msa0244760:CDS 45.0%
!! CGTAGTCCAATTTTGGGAGA+TGG - chr2_2:23529141-23529160 None:intergenic 45.0%
! GCACACTCGTAGTCCAATTT+TGG - chr2_2:23529148-23529167 None:intergenic 45.0%
GTCATTTCGAAAAGTGGAGC+TGG + chr2_2:23529277-23529296 Msa0244760:intron 45.0%
TGTCACTCTCTCTTAAGGAG+GGG + chr2_2:23529462-23529481 Msa0244760:intron 45.0%
TCTAGCTGTAGGAAACACCA+GGG - chr2_2:23529527-23529546 None:intergenic 45.0%
ATCTAGCTGTAGGAAACACC+AGG - chr2_2:23529528-23529547 None:intergenic 45.0%
TGTGCTTAGGGAAGGAATTC+CGG + chr2_2:23530781-23530800 Msa0244760:intron 45.0%
! ATGATGATTTGGGTCAGGAG+GGG - chr2_2:23530864-23530883 None:intergenic 45.0%
GGATCCCTCATTCTAATCAG+CGG + chr2_2:23530922-23530941 Msa0244760:intron 45.0%
! CATGCCGCTGATTAGAATGA+GGG - chr2_2:23530929-23530948 None:intergenic 45.0%
! TATTAGTGACCAGAGGGTGT+AGG + chr2_2:23531310-23531329 Msa0244760:intron 45.0%
AACTTCATACCTACACCCTC+TGG - chr2_2:23531322-23531341 None:intergenic 45.0%
! AGAGGGTGTAGGTATGAAGT+TGG + chr2_2:23531321-23531340 Msa0244760:intron 45.0%
! GAGGGTGTAGGTATGAAGTT+GGG + chr2_2:23531322-23531341 Msa0244760:intron 45.0%
GGGTGAGTAGAAAACTGAGT+AGG + chr2_2:23531342-23531361 Msa0244760:intron 45.0%
!! TCACTGGCCCAGTATTTTTG+TGG + chr2_2:23531511-23531530 Msa0244760:intron 45.0%
GCTCATGATGATTATGGCCA+AGG - chr2_2:23531618-23531637 None:intergenic 45.0%
!! CAGCAAAACTGTTGGTTCCT+AGG - chr2_2:23531878-23531897 None:intergenic 45.0%
! CTAGGAACCAACAGTTTTGC+TGG + chr2_2:23531876-23531895 Msa0244760:three_prime_UTR 45.0%
! GAACCAACAGTTTTGCTGGA+AGG + chr2_2:23531880-23531899 Msa0244760:three_prime_UTR 45.0%
!! TAAAAATATACATTATTATT+AGG + chr2_2:23526993-23527012 Msa0244760:intron 5.0%
! GCGTTGATCTTTCTCGGAAC+AGG + chr2_2:23526462-23526481 Msa0244760:CDS 50.0%
CGGAACAGGCTGTTCAAGTA+TGG + chr2_2:23526476-23526495 Msa0244760:CDS 50.0%
ACGGAACAAGGAGGATCAGA+GGG - chr2_2:23526528-23526547 None:intergenic 50.0%
AACGGAACAAGGAGGATCAG+AGG - chr2_2:23526529-23526548 None:intergenic 50.0%
CGACAATGACTGAGCGCAAA+CGG - chr2_2:23526547-23526566 None:intergenic 50.0%
TCAGTCATTGTCGATCCCAC+CGG + chr2_2:23526554-23526573 Msa0244760:CDS 50.0%
TTAGGGAGACTGTGCTTCGA+TGG + chr2_2:23526765-23526784 Msa0244760:CDS 50.0%
GAACATGCTGATGCAGTCCT+TGG + chr2_2:23527737-23527756 Msa0244760:CDS 50.0%
TGCTGATGCAGTCCTTGGAT+TGG + chr2_2:23527742-23527761 Msa0244760:CDS 50.0%
!! ATGCTGACTCAGGTAGATGG+GGG - chr2_2:23527819-23527838 None:intergenic 50.0%
GAAAAGTGGAGCTGGACAGT+TGG + chr2_2:23529285-23529304 Msa0244760:CDS 50.0%
TGCAGAGGACTCTAACCTTC+TGG + chr2_2:23530184-23530203 Msa0244760:intron 50.0%
!! GGACTCTAACCTTCTGGTTC+CGG + chr2_2:23530190-23530209 Msa0244760:intron 50.0%
CCATCATGAGAAAGCTGCAC+CGG - chr2_2:23530803-23530822 None:intergenic 50.0%
! GCATGCCGCTGATTAGAATG+AGG - chr2_2:23530930-23530949 None:intergenic 50.0%
CTACTGATCATGAGAAGGGG+AGG - chr2_2:23531694-23531713 None:intergenic 50.0%
CACATGCTTTACCCTGCAAG+AGG - chr2_2:23531772-23531791 None:intergenic 50.0%
! CCAACAGTTTTGCTGGAAGG+CGG + chr2_2:23531883-23531902 Msa0244760:three_prime_UTR 50.0%
CGGAACTCCTCCCTCTGAAT+CGG + chr2_2:23526440-23526459 Msa0244760:CDS 55.0%
!! ATCAACGCCGATTCAGAGGG+AGG - chr2_2:23526450-23526469 None:intergenic 55.0%
TGAGCGCAAACGGAACAAGG+AGG - chr2_2:23526537-23526556 None:intergenic 55.0%
GACTGAGCGCAAACGGAACA+AGG - chr2_2:23526540-23526559 None:intergenic 55.0%
GGCGCTGTTCTGTTCTGTAC+AGG + chr2_2:23527427-23527446 Msa0244760:intron 55.0%
TCTTACATCCTCCCAGCTCC+TGG + chr2_2:23527482-23527501 Msa0244760:intron 55.0%
CTTACATCCTCCCAGCTCCT+GGG + chr2_2:23527483-23527502 Msa0244760:intron 55.0%
ATTTCTTCCCAGGAGCTGGG+AGG - chr2_2:23527493-23527512 None:intergenic 55.0%
TGACTCAGGTAGATGGGGGT+GGG - chr2_2:23527815-23527834 None:intergenic 55.0%
CTCGAACATCCGGAACCAGA+AGG - chr2_2:23530202-23530221 None:intergenic 55.0%
!! CTTCTGGTTCCGGATGTTCG+AGG + chr2_2:23530200-23530219 Msa0244760:intron 55.0%
CCGGTGCAGCTTTCTCATGA+TGG + chr2_2:23530800-23530819 Msa0244760:intron 55.0%
CCGCCTTCCAGCAAAACTGT+TGG - chr2_2:23531886-23531905 None:intergenic 55.0%
GACGCCATGGCCACATCCAA+CGG + chr2_2:23526408-23526427 Msa0244760:exon 60.0%
!! ACATCCAACGGCACCGACGA+CGG + chr2_2:23526420-23526439 Msa0244760:CDS 60.0%
AGAGGGAGGAGTTCCGTCGT+CGG - chr2_2:23526436-23526455 None:intergenic 60.0%
CGTGGGACTCGCGTGTCAAA+AGG - chr2_2:23526931-23526950 None:intergenic 60.0%
CTGACTCAGGTAGATGGGGG+TGG - chr2_2:23527816-23527835 None:intergenic 60.0%
! GGGAAGTACACACGGCACAG+TGG - chr2_2:23528332-23528351 None:intergenic 60.0%
GAAGGGTTGCTCAGATGGCC+TGG + chr2_2:23528813-23528832 Msa0244760:CDS 60.0%
TCCGGATGTTCGAGGAACGC+AGG + chr2_2:23530208-23530227 Msa0244760:intron 60.0%
GCCTGCGTTCCTCGAACATC+CGG - chr2_2:23530212-23530231 None:intergenic 60.0%
CTGGATCTACGGCGACGCCA+TGG + chr2_2:23526395-23526414 Msa0244760:exon 65.0%
!! GGTGCCGTTGGATGTGGCCA+TGG - chr2_2:23526415-23526434 None:intergenic 65.0%
!! GTCGTCGGTGCCGTTGGATG+TGG - chr2_2:23526421-23526440 None:intergenic 65.0%
!! AGTTCCGTCGTCGGTGCCGT+TGG - chr2_2:23526427-23526446 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 23526281 23532237 23526281 ID=Msa0244760;Name=Msa0244760
chr2_2 mRNA 23526281 23532237 23526281 ID=Msa0244760-mRNA-1;Parent=Msa0244760;Name=Msa0244760-mRNA-1;_AED=0.25;_eAED=0.25;_QI=133|0.87|1|1|0.87|0.88|9|422|313
chr2_2 exon 23526281 23526595 23526281 ID=Msa0244760-mRNA-1:exon:8969;Parent=Msa0244760-mRNA-1
chr2_2 exon 23526685 23526820 23526685 ID=Msa0244760-mRNA-1:exon:8970;Parent=Msa0244760-mRNA-1
chr2_2 exon 23527722 23527849 23527722 ID=Msa0244760-mRNA-1:exon:8971;Parent=Msa0244760-mRNA-1
chr2_2 exon 23528754 23528901 23528754 ID=Msa0244760-mRNA-1:exon:8972;Parent=Msa0244760-mRNA-1
chr2_2 exon 23528984 23529089 23528984 ID=Msa0244760-mRNA-1:exon:8973;Parent=Msa0244760-mRNA-1
chr2_2 exon 23529278 23529336 23529278 ID=Msa0244760-mRNA-1:exon:8974;Parent=Msa0244760-mRNA-1
chr2_2 exon 23530393 23530428 23530393 ID=Msa0244760-mRNA-1:exon:8975;Parent=Msa0244760-mRNA-1
chr2_2 exon 23530506 23530615 23530506 ID=Msa0244760-mRNA-1:exon:8976;Parent=Msa0244760-mRNA-1
chr2_2 exon 23531779 23532237 23531779 ID=Msa0244760-mRNA-1:exon:8977;Parent=Msa0244760-mRNA-1
chr2_2 five_prime_UTR 23526281 23526413 23526281 ID=Msa0244760-mRNA-1:five_prime_utr;Parent=Msa0244760-mRNA-1
chr2_2 CDS 23526414 23526595 23526414 ID=Msa0244760-mRNA-1:cds;Parent=Msa0244760-mRNA-1
chr2_2 CDS 23526685 23526820 23526685 ID=Msa0244760-mRNA-1:cds;Parent=Msa0244760-mRNA-1
chr2_2 CDS 23527722 23527849 23527722 ID=Msa0244760-mRNA-1:cds;Parent=Msa0244760-mRNA-1
chr2_2 CDS 23528754 23528901 23528754 ID=Msa0244760-mRNA-1:cds;Parent=Msa0244760-mRNA-1
chr2_2 CDS 23528984 23529089 23528984 ID=Msa0244760-mRNA-1:cds;Parent=Msa0244760-mRNA-1
chr2_2 CDS 23529278 23529336 23529278 ID=Msa0244760-mRNA-1:cds;Parent=Msa0244760-mRNA-1
chr2_2 CDS 23530393 23530428 23530393 ID=Msa0244760-mRNA-1:cds;Parent=Msa0244760-mRNA-1
chr2_2 CDS 23530506 23530615 23530506 ID=Msa0244760-mRNA-1:cds;Parent=Msa0244760-mRNA-1
chr2_2 CDS 23531779 23531815 23531779 ID=Msa0244760-mRNA-1:cds;Parent=Msa0244760-mRNA-1
chr2_2 three_prime_UTR 23531816 23532237 23531816 ID=Msa0244760-mRNA-1:three_prime_utr;Parent=Msa0244760-mRNA-1
Gene Sequence

>Msa0244760

ATGGCCACATCCAACGGCACCGACGACGGAACTCCTCCCTCTGAATCGGCGTTGATCTTTCTCGGAACAGGCTGTTCAAGTATGGTTCCCAATGTACTGTGTCTCATCAATCCCTCTGATCCTCCTTGTTCCGTTTGCGCTCAGTCATTGTCGATCCCACCGGAGAAAAACCCTAATTACAGGTGTAATACTTCGATGTTAATTGATTATTGTGGAAGCGGTGGTAATCATAATTATATATTGATTGATGTTGGCAAGACGTTTAGGGAGACTGTGCTTCGATGGTTTGTTCATCATCGGATTCCAAGAATCGATTCTATTATTTTGACTCATGAACATGCTGATGCAGTCCTTGGATTGGATGATGTACGAGCTGTGCAGCCTTTTAGTCCAACAAATGATATTGATCCCACCCCCATCTACCTGAGTCAGCATTCAATGGATAGCATAGAAGAGAAGTTTCCTTATTTGGTTCAGAAACAACGCAAGGAAGGACAAGAAATACGAAGGGTTGCTCAGATGGCCTGGAACATTATCACTGATGACTGCAATCAGCCATTTTTTGCATCAGGATTGAAATTCACTCCTTTACCAGTAATGCATGGAGAGGATTACATCTGTTTGGGATTTCTTTTTGGTGAGAAAAGTAAGGTGGCTTATATATCTGATGTTTCACGGATTCCCGCGAGTACAGAATATGTCATTTCGAAAAGTGGAGCTGGACAGTTGGATCTTCTAATATTGGATTCATTATATAGGACTGGATCGCATAATGTCCATCTTTGTTTTCCACAGACTCTTGAAATTGTGAAGAGGTTGTGTCCAAAGCAAACCCTATTGATTGGAATGACTCATGAGTTTGATCACCACAAGGACAATGAGTTTTTGAAAGAGTGGTCCAGAAGGGTAAAGCATGTGACAATCTATACCATATACAATTGA

Protein sequence

>Msa0244760

MATSNGTDDGTPPSESALIFLGTGCSSMVPNVLCLINPSDPPCSVCAQSLSIPPEKNPNYRCNTSMLIDYCGSGGNHNYILIDVGKTFRETVLRWFVHHRIPRIDSIILTHEHADAVLGLDDVRAVQPFSPTNDIDPTPIYLSQHSMDSIEEKFPYLVQKQRKEGQEIRRVAQMAWNIITDDCNQPFFASGLKFTPLPVMHGEDYICLGFLFGEKSKVAYISDVSRIPASTEYVISKSGAGQLDLLILDSLYRTGSHNVHLCFPQTLEIVKRLCPKQTLLIGMTHEFDHHKDNEFLKEWSRRVKHVTIYTIYN*