AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0299010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0299010 MtrunA17_Chr2g0285411 99.338 302 2 0 1 302 1 302 0.0 629
Msa0299010 MtrunA17_Chr8g0342441 40.351 285 146 10 15 298 58 319 3.87e-57 187
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0299010 AT1G30300.1 75.410 305 72 1 1 302 2 306 4.68e-178 495
Msa0299010 AT1G30300.3 75.410 305 72 1 1 302 2 306 4.68e-178 495
Msa0299010 AT1G30300.2 75.410 305 72 1 1 302 2 306 4.68e-178 495
Msa0299010 AT1G30300.4 75.410 305 72 1 1 302 2 306 4.68e-178 495
Msa0299010 AT4G03610.4 64.821 307 96 5 1 302 1 300 4.31e-142 404
Msa0299010 AT4G03610.2 64.111 287 91 5 1 282 1 280 9.65e-130 372
Msa0299010 AT4G03610.1 61.564 307 91 6 1 302 1 285 6.42e-129 370
Msa0299010 AT4G03610.3 66.008 253 76 4 1 250 1 246 6.28e-117 337
Msa0299010 AT3G13800.1 40.493 284 146 10 16 298 78 339 3.92e-53 178
Msa0299010 AT3G13800.4 40.493 284 146 10 16 298 78 339 3.92e-53 178
Msa0299010 AT3G13800.3 40.502 279 143 10 21 298 1 257 9.20e-52 172
Msa0299010 AT3G13800.2 40.502 279 143 10 21 298 1 257 9.20e-52 172

Find 101 sgRNAs with CRISPR-Local

Find 385 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAGAGAAGTTTCCTTATT+TGG 0.135750 2_3:-53329412 Msa0299010:CDS
GAAAGAGAGTACCTGTAATT+AGG 0.152242 2_3:+53331584 None:intergenic
TCTTTCTCTCTCATCTCTTC+TGG 0.177721 2_3:-53331793 Msa0299010:five_prime_UTR
CGTTGTTTCTGAACCAAATA+AGG 0.179452 2_3:+53329399 None:intergenic
ATATCATTTGTTGGACTAAA+AGG 0.183530 2_3:+53330384 None:intergenic
ACAGTTGGATCTTCTAATAT+TGG 0.247221 2_3:-53328869 Msa0299010:CDS
GGGCATCTTTGAAAATATTA+AGG 0.254973 2_3:+53326441 None:intergenic
CCTAGGTTTGCTTTAGAAAC+TGG 0.258915 2_3:+53326420 None:intergenic
TAATATTGGATTCATTATAT+AGG 0.272370 2_3:-53328855 Msa0299010:CDS
AAAAGATTACATCTCTAATT+AGG 0.275025 2_3:+53326171 None:intergenic
TACATCTCTAATTAGGATAT+TGG 0.285182 2_3:+53326178 None:intergenic
TTGATGTTGGCAAGACGTTT+AGG 0.306067 2_3:-53331422 Msa0299010:CDS
TTGATCTTATTTAGATTCAT+TGG 0.307127 2_3:-53326466 Msa0299010:exon
TAAATAAGATCAACTGTATA+TGG 0.310412 2_3:+53326476 None:intergenic
TGACCCTGCAAAAGATTCTT+AGG 0.311116 2_3:+53326215 None:intergenic
TAACTCACAGAATCGATTCT+TGG 0.317245 2_3:+53331363 None:intergenic
AATATTGGATTCATTATATA+GGG 0.318957 2_3:-53328854 Msa0299010:intron
CAGCAAAACTGTTGGTTCCT+AGG 0.324849 2_3:+53326403 None:intergenic
AAAGAGAGTACCTGTAATTA+GGG 0.331055 2_3:+53331585 None:intergenic
CGGAACAGGCTGTTCAAGTA+TGG 0.338495 2_3:-53331693 Msa0299010:CDS
TGAATGCTGACTCAGGTAGA+TGG 0.349627 2_3:+53330350 None:intergenic
TGGAGAGGATTACATCTGTT+TGG 0.350777 2_3:-53329177 Msa0299010:CDS
TGATGTTGGCAAGACGTTTA+GGG 0.356782 2_3:-53331421 Msa0299010:CDS
CATGAGTCATTCCAATCAAT+AGG 0.362542 2_3:+53327626 None:intergenic
GGAGAGGATTACATCTGTTT+GGG 0.373515 2_3:-53329176 Msa0299010:CDS
GTCATCAGTGATAATGTTCC+AGG 0.377002 2_3:+53329338 None:intergenic
GCGTTGATCTTTCTCGGAAC+AGG 0.380171 2_3:-53331707 Msa0299010:CDS
TTTACAGTCATTTCGAAAAG+TGG 0.389227 2_3:-53328898 Msa0299010:intron
GAATCGGCGTTGATCTTTCT+CGG 0.402893 2_3:-53331713 Msa0299010:CDS
CCAATCAATAGGGTTTGCTT+TGG 0.405132 2_3:+53327637 None:intergenic
CGACAATGACTGAGCGCAAA+CGG 0.414803 2_3:+53331625 None:intergenic
TGATTGTTATAAATAATAAA+TGG 0.427899 2_3:-53326103 Msa0299010:three_prime_UTR
CTTATATATCTGATGTTTCA+CGG 0.432628 2_3:-53329124 Msa0299010:CDS
CCAAAGCAAACCCTATTGAT+TGG 0.435743 2_3:-53327637 Msa0299010:CDS
GAAAATGAGAAGAAAGAAGA+AGG 0.447368 2_3:+53331826 None:intergenic
ATGAGTCATTCCAATCAATA+GGG 0.448438 2_3:+53327627 None:intergenic
TTCGATGGTTTGTTCATCAT+CGG 0.450026 2_3:-53331389 Msa0299010:CDS
ATTCCCGCGAGTACAGAATA+TGG 0.455050 2_3:-53329101 Msa0299010:intron
CTAGGTTTGCTTTAGAAACT+GGG 0.456159 2_3:+53326421 None:intergenic
GTGGGATCAATATCATTTGT+TGG 0.461356 2_3:+53330375 None:intergenic
GAAGGGTTGCTCAGATGGCC+TGG 0.469919 2_3:-53329356 Msa0299010:CDS
AATTATATATTGATTGATGT+TGG 0.471348 2_3:-53331435 Msa0299010:CDS
CTACCTGAGTCAGCATTCAA+TGG 0.481362 2_3:-53330346 Msa0299010:CDS
GTCGTCGGTGCCGTTGGATG+TGG 0.481521 2_3:+53331751 None:intergenic
GAACATGCTGATGCAGTCCT+TGG 0.486458 2_3:-53330432 Msa0299010:CDS
GAATGCTGACTCAGGTAGAT+GGG 0.487485 2_3:+53330351 None:intergenic
AGTTCCGTCGTCGGTGCCGT+TGG 0.490322 2_3:+53331745 None:intergenic
TTGATGAGACACAGTACATT+GGG 0.499967 2_3:+53331668 None:intergenic
ATAGTGCAATTAACTGGTAA+AGG 0.503581 2_3:+53329276 None:intergenic
ATCTCTAATTAGGATATTGG+TGG 0.503723 2_3:+53326181 None:intergenic
AATACGAAGGGTTGCTCAGA+TGG 0.505761 2_3:-53329361 Msa0299010:CDS
TCTCATCTCTTCTGGATCTA+CGG 0.507309 2_3:-53331785 Msa0299010:five_prime_UTR
GACGCCATGGCCACATCCAA+CGG 0.511458 2_3:-53331761 Msa0299010:exon
ATGAGAAGAAAGAAGAAGGA+AGG 0.515376 2_3:+53331830 None:intergenic
TGCTGATGCAGTCCTTGGAT+TGG 0.516613 2_3:-53330427 Msa0299010:CDS
AGAAGAAAGAAGAAGGAAGG+TGG 0.521916 2_3:+53331833 None:intergenic
GTCATTTCGAAAAGTGGAGC+TGG 0.524520 2_3:-53328892 Msa0299010:CDS
AAACCTGTGGAAAACAAAGA+TGG 0.525306 2_3:+53327760 None:intergenic
CGGAACTCCTCCCTCTGAAT+CGG 0.526733 2_3:-53331729 Msa0299010:CDS
AAAGATCAACGCCGATTCAG+AGG 0.529103 2_3:+53331718 None:intergenic
TTAATTGATTATTGTGGAAG+CGG 0.535963 2_3:-53331468 Msa0299010:CDS
TCTAATTAGGATATTGGTGG+GGG 0.540434 2_3:+53326184 None:intergenic
GACTGAGCGCAAACGGAACA+AGG 0.540973 2_3:+53331632 None:intergenic
GGTGCCGTTGGATGTGGCCA+TGG 0.542231 2_3:+53331757 None:intergenic
CTGGATCTACGGCGACGCCA+TGG 0.542253 2_3:-53331774 Msa0299010:exon
TCTCTAATTAGGATATTGGT+GGG 0.545609 2_3:+53326182 None:intergenic
TTAGGGAGACTGTGCTTCGA+TGG 0.547897 2_3:-53331404 Msa0299010:CDS
ACATCCAACGGCACCGACGA+CGG 0.551645 2_3:-53331749 Msa0299010:CDS
GAAAAGTGGAGCTGGACAGT+TGG 0.552369 2_3:-53328884 Msa0299010:CDS
CTCTAATTAGGATATTGGTG+GGG 0.557419 2_3:+53326183 None:intergenic
AAAAGATTCTTAGGATACAC+TGG 0.570189 2_3:+53326224 None:intergenic
AGCAGAAGCAACATAGAATG+AGG 0.572322 2_3:+53326048 None:intergenic
ATTGATGAGACACAGTACAT+TGG 0.574414 2_3:+53331667 None:intergenic
GTTCAGAAACAACGCAAGGA+AGG 0.576002 2_3:-53329390 Msa0299010:CDS
TGAGTCAGCATTCAATGGAT+AGG 0.583236 2_3:-53330341 Msa0299010:intron
CCGCCTTCCAGCAAAACTGT+TGG 0.583823 2_3:+53326395 None:intergenic
TATCCATTGAATGCTGACTC+AGG 0.588545 2_3:+53330343 None:intergenic
AAGATCAACGCCGATTCAGA+GGG 0.594996 2_3:+53331719 None:intergenic
TTGTGGATGTAGGTAATGCA+TGG 0.597231 2_3:-53329197 Msa0299010:intron
TCGATGTTAATTGATTATTG+TGG 0.600435 2_3:-53331474 Msa0299010:CDS
AGACTCTTGAAATTGTGAAG+AGG 0.603087 2_3:-53327666 Msa0299010:CDS
ATTGATTATTGTGGAAGCGG+TGG 0.603095 2_3:-53331465 Msa0299010:CDS
TCAGTCATTGTCGATCCCAC+CGG 0.604108 2_3:-53331615 Msa0299010:CDS
ATCAACGCCGATTCAGAGGG+AGG 0.605019 2_3:+53331722 None:intergenic
ACTTGTTATATTATAGTGTG+AGG 0.605776 2_3:-53326349 Msa0299010:three_prime_UTR
AGAGGGAGGAGTTCCGTCGT+CGG 0.610126 2_3:+53331736 None:intergenic
ATACCATATTCTGTACTCGC+GGG 0.613014 2_3:+53329098 None:intergenic
ACGGAACAAGGAGGATCAGA+GGG 0.613154 2_3:+53331644 None:intergenic
AACGGAACAAGGAGGATCAG+AGG 0.614159 2_3:+53331643 None:intergenic
CTCGTACATCATCCAATCCA+AGG 0.621489 2_3:+53330415 None:intergenic
CCAGTTTCTAAAGCAAACCT+AGG 0.630294 2_3:-53326420 Msa0299010:three_prime_UTR
AGGAAGGACAAGAAATACGA+AGG 0.640963 2_3:-53329374 Msa0299010:CDS
CATACCATATTCTGTACTCG+CGG 0.641738 2_3:+53329097 None:intergenic
TTTGGTTCAGAAACAACGCA+AGG 0.660626 2_3:-53329394 Msa0299010:CDS
GGAAGGACAAGAAATACGAA+GGG 0.662583 2_3:-53329373 Msa0299010:CDS
AATGCTGACTCAGGTAGATG+GGG 0.684919 2_3:+53330352 None:intergenic
CTAATTAGGATATTGGTGGG+GGG 0.709677 2_3:+53326185 None:intergenic
GATGTAGGTAATGCATGGAG+AGG 0.710977 2_3:-53329192 Msa0299010:intron
TCATGAGTTTGATCACCACA+AGG 0.734521 2_3:-53327608 Msa0299010:CDS
ATGCTGACTCAGGTAGATGG+GGG 0.739738 2_3:+53330353 None:intergenic
TGAGCGCAAACGGAACAAGG+AGG 0.758779 2_3:+53331635 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTAGATATTCATTATAT+AGG - chr2_3:53329152-53329171 Msa0299010:CDS 10.0%
!! ATTTAGATATTCATTATATA+GGG - chr2_3:53329153-53329172 Msa0299010:CDS 10.0%
!! ATTTAAACTAATTAACTAAT+CGG - chr2_3:53330092-53330111 Msa0299010:intron 10.0%
!! TGATTGTTATAAATAATAAA+TGG - chr2_3:53331837-53331856 Msa0299010:five_prime_UTR 10.0%
!!! AATTATATATTGATTGATGT+TGG - chr2_3:53326505-53326524 Msa0299010:intron 15.0%
!! AAAATAGATAAATGACTATT+AGG - chr2_3:53326736-53326755 Msa0299010:intron 15.0%
!! ATAACTAATATTAACGATAA+TGG + chr2_3:53327785-53327804 None:intergenic 15.0%
!! TATTGTTAAAGATACATATT+GGG + chr2_3:53327922-53327941 None:intergenic 15.0%
!! TTATTGTTAAAGATACATAT+TGG + chr2_3:53327923-53327942 None:intergenic 15.0%
!! TTTCAATTATTTATTGTTAC+TGG + chr2_3:53328285-53328304 None:intergenic 15.0%
!! TAATATTGGATTCATTATAT+AGG - chr2_3:53329085-53329104 Msa0299010:intron 15.0%
!! AATATTGGATTCATTATATA+GGG - chr2_3:53329086-53329105 Msa0299010:intron 15.0%
!!! TATATTTTTCCTATTTTCAA+AGG + chr2_3:53329391-53329410 None:intergenic 15.0%
!!! TAGATGCTTTAAAAAATTTA+GGG - chr2_3:53329594-53329613 Msa0299010:intron 15.0%
!! TTTAAAAAATTTAGGGATAT+CGG - chr2_3:53329601-53329620 Msa0299010:intron 15.0%
!! TAATACTCCAATAATTAATT+GGG + chr2_3:53329770-53329789 None:intergenic 15.0%
!! TTAATACTCCAATAATTAAT+TGG + chr2_3:53329771-53329790 None:intergenic 15.0%
!!! GATTAGTTAATTAGTTTAAA+TGG + chr2_3:53330093-53330112 None:intergenic 15.0%
!! TTTAAACTAATTAACTAATC+GGG - chr2_3:53330093-53330112 Msa0299010:intron 15.0%
!!! ATATTTGACTTATTTACAAA+TGG + chr2_3:53330393-53330412 None:intergenic 15.0%
!! TCTTGATACTATAATATTAT+TGG - chr2_3:53330773-53330792 Msa0299010:intron 15.0%
!!! TAATTTTTCACTTTTTTGTT+TGG - chr2_3:53331032-53331051 Msa0299010:intron 15.0%
!! AAAAGATGAAGGATTATTAA+CGG - chr2_3:53326816-53326835 Msa0299010:intron 20.0%
!! TAGCATCAAAATATTTCTTA+AGG - chr2_3:53326966-53326985 Msa0299010:intron 20.0%
!! TCAATTTCTTTGTTAATTAG+TGG + chr2_3:53327078-53327097 None:intergenic 20.0%
!!! AGAATAAAAAACTAGTTCTT+TGG - chr2_3:53327459-53327478 Msa0299010:intron 20.0%
!!! ATCTTAAGATTTGTTTATGT+AGG + chr2_3:53327707-53327726 None:intergenic 20.0%
!!! CAATTAATGAACTTTTCATT+TGG + chr2_3:53328198-53328217 None:intergenic 20.0%
!!! AGTAAAGCATTCTTAATATA+AGG + chr2_3:53328696-53328715 None:intergenic 20.0%
!! ATCTATTTGTTTCATCATTT+AGG - chr2_3:53328952-53328971 Msa0299010:intron 20.0%
!! TCTATTTGTTTCATCATTTA+GGG - chr2_3:53328953-53328972 Msa0299010:intron 20.0%
!!! TTCTGTTGTCAATTTTTTTT+GGG - chr2_3:53329116-53329135 Msa0299010:CDS 20.0%
!!! CTAAATTTTTTAAAGCATCT+AGG + chr2_3:53329595-53329614 None:intergenic 20.0%
!!! CTAGATGCTTTAAAAAATTT+AGG - chr2_3:53329593-53329612 Msa0299010:intron 20.0%
!! AATAGAACCCAATTAATTAT+TGG - chr2_3:53329760-53329779 Msa0299010:intron 20.0%
!! TTCCATTGATATTTATATAC+AGG + chr2_3:53329898-53329917 None:intergenic 20.0%
!!! TAAAAATAGAAGCTTGTTTT+TGG + chr2_3:53330020-53330039 None:intergenic 20.0%
!! GATAGGATATATAAACTATA+GGG + chr2_3:53330050-53330069 None:intergenic 20.0%
!! TGATAGGATATATAAACTAT+AGG + chr2_3:53330051-53330070 None:intergenic 20.0%
!!! AGTTAATTAGTTTAAATGGT+TGG + chr2_3:53330089-53330108 None:intergenic 20.0%
!! GGTGGTAAAATATTATTAAT+TGG - chr2_3:53330242-53330261 Msa0299010:intron 20.0%
!! GATGAAAAAAATGATGATTT+GGG + chr2_3:53330644-53330663 None:intergenic 20.0%
!! TGATGAAAAAAATGATGATT+TGG + chr2_3:53330645-53330664 None:intergenic 20.0%
!!! ATCATTTTTTTCATCATGAA+CGG - chr2_3:53330649-53330668 Msa0299010:intron 20.0%
!!! ATTGAAGTTGATAAAATTTG+CGG - chr2_3:53331117-53331136 Msa0299010:intron 20.0%
!! TAAATAAGATCAACTGTATA+TGG + chr2_3:53331467-53331486 None:intergenic 20.0%
!!! TTGATCTTATTTAGATTCAT+TGG - chr2_3:53331474-53331493 Msa0299010:CDS 20.0%
!! AAAAGATTACATCTCTAATT+AGG + chr2_3:53331772-53331791 None:intergenic 20.0%
! TCGATGTTAATTGATTATTG+TGG - chr2_3:53326466-53326485 Msa0299010:exon 25.0%
! TTAATTGATTATTGTGGAAG+CGG - chr2_3:53326472-53326491 Msa0299010:exon 25.0%
! AAAGATGAAGGATTATTAAC+GGG - chr2_3:53326817-53326836 Msa0299010:intron 25.0%
! ATTTCTTTGTTAATTAGTGG+TGG + chr2_3:53327075-53327094 None:intergenic 25.0%
!! ATGGCAACTAGAAATTTTAA+GGG + chr2_3:53327152-53327171 None:intergenic 25.0%
!! AATGGCAACTAGAAATTTTA+AGG + chr2_3:53327153-53327172 None:intergenic 25.0%
!!! TTAAAATTTCTAGTTGCCAT+TGG - chr2_3:53327152-53327171 Msa0299010:intron 25.0%
!! CATTTTGTAATCTGATTCTA+TGG - chr2_3:53327177-53327196 Msa0299010:intron 25.0%
!! ATATCATTTGTTGGACTAAA+AGG + chr2_3:53327559-53327578 None:intergenic 25.0%
! TTACATATCAAAACACACAA+CGG + chr2_3:53327637-53327656 None:intergenic 25.0%
! CTTACTTAAACTAAAAGTTC+TGG - chr2_3:53327809-53327828 Msa0299010:intron 25.0%
!!! CTTTTAAGAGCATTTATCTA+GGG + chr2_3:53327850-53327869 None:intergenic 25.0%
!!! TCTTTTAAGAGCATTTATCT+AGG + chr2_3:53327851-53327870 None:intergenic 25.0%
! AAAAGATATAGATAAGCACA+TGG - chr2_3:53327865-53327884 Msa0299010:intron 25.0%
!! ATTTTTGTTGAAGTTCTTTG+TGG - chr2_3:53327888-53327907 Msa0299010:intron 25.0%
!!! GGTATTGAATTTTTCTAGTA+TGG + chr2_3:53328233-53328252 None:intergenic 25.0%
!!! TTTGATTTTTGGACAAGTTT+TGG + chr2_3:53328329-53328348 None:intergenic 25.0%
!!! GTTCTGCTAAATTTGATTTT+TGG + chr2_3:53328340-53328359 None:intergenic 25.0%
! AAATTTAGCAGAACAATACT+AGG - chr2_3:53328346-53328365 Msa0299010:intron 25.0%
! AAAAAGATAGTGCAATTAAC+TGG + chr2_3:53328673-53328692 None:intergenic 25.0%
! CTTATATATCTGATGTTTCA+CGG - chr2_3:53328816-53328835 Msa0299010:intron 25.0%
! CTATTTGTTTCATCATTTAG+GGG - chr2_3:53328954-53328973 Msa0299010:intron 25.0%
! TATTTGTTTCATCATTTAGG+GGG - chr2_3:53328955-53328974 Msa0299010:intron 25.0%
!! TTTTCGAAATGACTGTAAAA+AGG + chr2_3:53329041-53329060 None:intergenic 25.0%
!!! GTTCTGTTGTCAATTTTTTT+TGG - chr2_3:53329115-53329134 Msa0299010:CDS 25.0%
!!! CTATGTGTTATTTTGTTTAG+TGG - chr2_3:53329328-53329347 Msa0299010:CDS 25.0%
! TGTATGAGAAAAACGAAATA+TGG + chr2_3:53329486-53329505 None:intergenic 25.0%
!! AAGTAACTTGACTTTTCTAT+CGG + chr2_3:53329657-53329676 None:intergenic 25.0%
! CATTTATCAATGAGAAAGTA+AGG + chr2_3:53329735-53329754 None:intergenic 25.0%
!! GTAATGGAATATAGTGAATT+TGG - chr2_3:53329807-53329826 Msa0299010:intron 25.0%
! TTGATAGAAAATATCTGCTA+TGG - chr2_3:53329871-53329890 Msa0299010:intron 25.0%
! GTCCTGTATATAAATATCAA+TGG - chr2_3:53329893-53329912 Msa0299010:intron 25.0%
!!! GTTATTTCTTCATAGATGAT+AGG + chr2_3:53330067-53330086 None:intergenic 25.0%
! AAAAATACATAACATACCAG+AGG + chr2_3:53330502-53330521 None:intergenic 25.0%
! TCACCTTACTATAAGTTTAT+GGG + chr2_3:53330606-53330625 None:intergenic 25.0%
!! ATGCACATTTTACAAAATCA+GGG + chr2_3:53330815-53330834 None:intergenic 25.0%
!! AATGCACATTTTACAAAATC+AGG + chr2_3:53330816-53330835 None:intergenic 25.0%
!!! ATTGTGTTGATTGACATTTA+TGG - chr2_3:53330841-53330860 Msa0299010:intron 25.0%
!!! TTGAAGTTGATAAAATTTGC+GGG - chr2_3:53331118-53331137 Msa0299010:intron 25.0%
! ATTACGTAATAGTAATGGTT+AGG + chr2_3:53331198-53331217 None:intergenic 25.0%
! CAAAGATTACGTAATAGTAA+TGG + chr2_3:53331203-53331222 None:intergenic 25.0%
! TATGGCTAAAGTACAAATAA+GGG + chr2_3:53331245-53331264 None:intergenic 25.0%
! ATTTATGCTCATGATGATTA+TGG + chr2_3:53331286-53331305 None:intergenic 25.0%
!!! ACTTGTTATATTATAGTGTG+AGG - chr2_3:53331591-53331610 Msa0299010:intron 25.0%
!! TGAGGAAATCTTGATTTTTA+TGG - chr2_3:53331609-53331628 Msa0299010:CDS 25.0%
! TACATCTCTAATTAGGATAT+TGG + chr2_3:53331765-53331784 None:intergenic 25.0%
GAAAATGAGAAGAAAGAAGA+AGG + chr2_3:53326117-53326136 None:intergenic 30.0%
!! AAAGAGAGTACCTGTAATTA+GGG + chr2_3:53326358-53326377 None:intergenic 30.0%
TTGAAGCTTGATTTAGTGAT+TGG - chr2_3:53326656-53326675 Msa0299010:intron 30.0%
! TTTTATGAAAAGTTGCTCGT+GGG + chr2_3:53326719-53326738 None:intergenic 30.0%
! TTTTTATGAAAAGTTGCTCG+TGG + chr2_3:53326720-53326739 None:intergenic 30.0%
ATTTCATTTCAGATGTATGC+TGG - chr2_3:53326894-53326913 Msa0299010:intron 30.0%
!!! ATATTTTGATGCTATAGCCA+TGG + chr2_3:53326960-53326979 None:intergenic 30.0%
! TAATGTTGTCATTTCTGTGT+TGG - chr2_3:53326999-53327018 Msa0299010:intron 30.0%
!! TTCTGTGTTGGTTATAAAAC+TGG - chr2_3:53327011-53327030 Msa0299010:intron 30.0%
! TGTTGGTTATAAAACTGGTA+AGG - chr2_3:53327016-53327035 Msa0299010:intron 30.0%
! TGGCAACTAGAAATTTTAAG+GGG + chr2_3:53327151-53327170 None:intergenic 30.0%
CAGATTACAAAATGAACCAA+TGG + chr2_3:53327171-53327190 None:intergenic 30.0%
CCTAAAATGAATTTCTTCCT+AGG + chr2_3:53327274-53327293 None:intergenic 30.0%
! CCTAGGAAGAAATTCATTTT+AGG - chr2_3:53327271-53327290 Msa0299010:intron 30.0%
TGACATGATATTCAAGAACA+TGG - chr2_3:53327343-53327362 Msa0299010:intron 30.0%
AGACAAAAGGAAGAAAATCT+AGG + chr2_3:53327391-53327410 None:intergenic 30.0%
! GATTTTCTTCCTTTTGTCTA+CGG - chr2_3:53327392-53327411 Msa0299010:intron 30.0%
TCAGGTCAATTCAAATTTCA+AGG + chr2_3:53327424-53327443 None:intergenic 30.0%
TCTCAAAGACTGAAAATTTC+AGG + chr2_3:53327442-53327461 None:intergenic 30.0%
ATGTAGGTTTCGAAAATAGA+GGG + chr2_3:53327691-53327710 None:intergenic 30.0%
TATGTAGGTTTCGAAAATAG+AGG + chr2_3:53327692-53327711 None:intergenic 30.0%
! TCTGAGACTATTTGATAGTT+AGG + chr2_3:53327749-53327768 None:intergenic 30.0%
TCACTTACCAATCTGTTAAA+AGG - chr2_3:53327959-53327978 Msa0299010:intron 30.0%
!! TAAGGTACCTTTTAACAGAT+TGG + chr2_3:53327969-53327988 None:intergenic 30.0%
TAGAGCAACATTGATCAATA+AGG + chr2_3:53327987-53328006 None:intergenic 30.0%
TATAATTCTGTTGATATCCC+AGG - chr2_3:53328033-53328052 Msa0299010:intron 30.0%
AACTCAGATGCTTGTATATT+TGG - chr2_3:53328131-53328150 Msa0299010:intron 30.0%
!!! TTTTTGGACAAGTTTTGGTT+TGG + chr2_3:53328324-53328343 None:intergenic 30.0%
ACACATGCTCAAAATATAAC+TGG + chr2_3:53328375-53328394 None:intergenic 30.0%
ATCATAATTCATGCTGAGAT+AGG + chr2_3:53328430-53328449 None:intergenic 30.0%
! CACCTTTTCTTTGATTGTAT+GGG - chr2_3:53328451-53328470 Msa0299010:intron 30.0%
!!! TGTTGCAAAGTTTTAAACCA+TGG + chr2_3:53328504-53328523 None:intergenic 30.0%
AGAAGAGAAGTTTCCTTATT+TGG - chr2_3:53328528-53328547 Msa0299010:intron 30.0%
TTCAATCCTGATGCAAAAAA+TGG + chr2_3:53328637-53328656 None:intergenic 30.0%
ATAGTGCAATTAACTGGTAA+AGG + chr2_3:53328667-53328686 None:intergenic 30.0%
!!! TTACTGTTTTTTGTGGATGT+AGG - chr2_3:53328733-53328752 Msa0299010:intron 30.0%
!! ATCTGTTTGGGATTTCTTTT+TGG - chr2_3:53328776-53328795 Msa0299010:intron 30.0%
!! TTCTTTTTGGTGAGAAAAGT+AGG - chr2_3:53328789-53328808 Msa0299010:intron 30.0%
!! TCTTTTTGGTGAGAAAAGTA+GGG - chr2_3:53328790-53328809 Msa0299010:intron 30.0%
TTTACAGTCATTTCGAAAAG+TGG - chr2_3:53329042-53329061 Msa0299010:intron 30.0%
ACAGTTGGATCTTCTAATAT+TGG - chr2_3:53329071-53329090 Msa0299010:intron 30.0%
! TAGCACAAACCTTTGAAAAT+AGG - chr2_3:53329379-53329398 Msa0299010:CDS 30.0%
!! TTTCGTTTTTCTCATACAAG+AGG - chr2_3:53329488-53329507 Msa0299010:intron 30.0%
TACTTGTTCAATAACATGAC+TGG - chr2_3:53329527-53329546 Msa0299010:intron 30.0%
! AGTAACTTGACTTTTCTATC+GGG + chr2_3:53329656-53329675 None:intergenic 30.0%
CCATTACGCATTTATGATAA+TGG + chr2_3:53329794-53329813 None:intergenic 30.0%
CCATTATCATAAATGCGTAA+TGG - chr2_3:53329791-53329810 Msa0299010:intron 30.0%
ATTTGGTCATAAGTGTGTAA+TGG - chr2_3:53329824-53329843 Msa0299010:intron 30.0%
! GTGTGTAATGGAATATAGAA+AGG - chr2_3:53329836-53329855 Msa0299010:intron 30.0%
GGAATACAAGATCATAAATG+AGG - chr2_3:53329914-53329933 Msa0299010:intron 30.0%
!!! AGAAGCTTGTTTTTGGTTTA+GGG + chr2_3:53330013-53330032 None:intergenic 30.0%
!!! TAGAAGCTTGTTTTTGGTTT+AGG + chr2_3:53330014-53330033 None:intergenic 30.0%
CAAAATTGAAAACAAACCTG+TGG + chr2_3:53330196-53330215 None:intergenic 30.0%
ATGAGTCATTCCAATCAATA+GGG + chr2_3:53330316-53330335 None:intergenic 30.0%
!! ACAATGAGTTTTTGAAAGAG+TGG - chr2_3:53330355-53330374 Msa0299010:CDS 30.0%
ATTTACAAATGGATACCTTC+TGG + chr2_3:53330382-53330401 None:intergenic 30.0%
TATTTATCATTGTACTCCTC+TGG - chr2_3:53330483-53330502 Msa0299010:intron 30.0%
CACCTTACTATAAGTTTATG+GGG + chr2_3:53330605-53330624 None:intergenic 30.0%
CTCACCTTACTATAAGTTTA+TGG + chr2_3:53330607-53330626 None:intergenic 30.0%
CATAAACTTATAGTAAGGTG+AGG - chr2_3:53330605-53330624 Msa0299010:intron 30.0%
! AAAAAATGATGATTTGGGTC+AGG + chr2_3:53330639-53330658 None:intergenic 30.0%
GTACATAGAGAAGTAGAATA+TGG - chr2_3:53330671-53330690 Msa0299010:intron 30.0%
TATCAAGAAAAAACGAGACA+TGG + chr2_3:53330731-53330750 None:intergenic 30.0%
AGAAAAAACATAAGACCAGA+GGG + chr2_3:53330756-53330775 None:intergenic 30.0%
AAGAAAAAACATAAGACCAG+AGG + chr2_3:53330757-53330776 None:intergenic 30.0%
TTGTGTAGTGATTGACATTT+AGG - chr2_3:53330935-53330954 Msa0299010:intron 30.0%
TGTGTAGTGATTGACATTTA+GGG - chr2_3:53330936-53330955 Msa0299010:intron 30.0%
!! TGAAGTTGATAAAATTTGCG+GGG - chr2_3:53331119-53331138 Msa0299010:intron 30.0%
TTAGGAACCACAAAAATACT+GGG + chr2_3:53331180-53331199 None:intergenic 30.0%
!!! AAATAAGGGTATGCTGTTTT+AGG + chr2_3:53331231-53331250 None:intergenic 30.0%
GTATGGCTAAAGTACAAATA+AGG + chr2_3:53331246-53331265 None:intergenic 30.0%
! TGTATTATTTTCCTCTTGCA+GGG - chr2_3:53331420-53331439 Msa0299010:CDS 30.0%
! GGGCATCTTTGAAAATATTA+AGG + chr2_3:53331502-53331521 None:intergenic 30.0%
AAAAGATTCTTAGGATACAC+TGG + chr2_3:53331719-53331738 None:intergenic 30.0%
! TATCCTAAGAATCTTTTGCA+GGG - chr2_3:53331722-53331741 Msa0299010:CDS 30.0%
TCTCTAATTAGGATATTGGT+GGG + chr2_3:53331761-53331780 None:intergenic 30.0%
ATCTCTAATTAGGATATTGG+TGG + chr2_3:53331762-53331781 None:intergenic 30.0%
ATGAGAAGAAAGAAGAAGGA+AGG + chr2_3:53326113-53326132 None:intergenic 35.0%
TTGATGAGACACAGTACATT+GGG + chr2_3:53326275-53326294 None:intergenic 35.0%
ATTGATGAGACACAGTACAT+TGG + chr2_3:53326276-53326295 None:intergenic 35.0%
! CTGTAATTAGGGTTTTTCTC+CGG + chr2_3:53326347-53326366 None:intergenic 35.0%
!! GAAAGAGAGTACCTGTAATT+AGG + chr2_3:53326359-53326378 None:intergenic 35.0%
! TTGATGTGATGTTCGTTTTG+TGG - chr2_3:53326425-53326444 Msa0299010:three_prime_UTR 35.0%
! TGTTCGTTTTGTGGATTTGT+AGG - chr2_3:53326434-53326453 Msa0299010:three_prime_UTR 35.0%
!! TTCGATGGTTTGTTCATCAT+CGG - chr2_3:53326551-53326570 Msa0299010:intron 35.0%
! TAACTCACAGAATCGATTCT+TGG + chr2_3:53326580-53326599 None:intergenic 35.0%
TCCAACAAGTCAAAAGATGA+AGG - chr2_3:53326805-53326824 Msa0299010:intron 35.0%
!!! TCCTTCATCTTTTGACTTGT+TGG + chr2_3:53326809-53326828 None:intergenic 35.0%
CAGGATGAAATCATAAGAGT+TGG - chr2_3:53326840-53326859 Msa0299010:intron 35.0%
!! GCAGAGCATCTGATTTTTAA+GGG - chr2_3:53326869-53326888 Msa0299010:intron 35.0%
TTTCAGATGTATGCTGGTAA+AGG - chr2_3:53326900-53326919 Msa0299010:intron 35.0%
TATGCTGGTAAAGGTTTCTA+GGG - chr2_3:53326909-53326928 Msa0299010:intron 35.0%
ATGCCATGAAGAGAAAGAAA+AGG - chr2_3:53326933-53326952 Msa0299010:intron 35.0%
TGCCATGAAGAGAAAGAAAA+GGG - chr2_3:53326934-53326953 Msa0299010:intron 35.0%
!! TTTGTTAATTAGTGGTGGAC+TGG + chr2_3:53327070-53327089 None:intergenic 35.0%
GTGGGATCAATATCATTTGT+TGG + chr2_3:53327568-53327587 None:intergenic 35.0%
GATACTGCACATAATATCCT+GGG + chr2_3:53328053-53328072 None:intergenic 35.0%
! GTGCTTACTGCTTTAGATTT+GGG + chr2_3:53328260-53328279 None:intergenic 35.0%
! TGTGCTTACTGCTTTAGATT+TGG + chr2_3:53328261-53328280 None:intergenic 35.0%
!!! GGTTTGGCTTTTGTTTTTAC+TGG + chr2_3:53328308-53328327 None:intergenic 35.0%
! CATTGCAATCTATGGGTTAA+GGG + chr2_3:53328402-53328421 None:intergenic 35.0%
! ACATTGCAATCTATGGGTTA+AGG + chr2_3:53328403-53328422 None:intergenic 35.0%
! GCACCTTTTCTTTGATTGTA+TGG - chr2_3:53328450-53328469 Msa0299010:intron 35.0%
AGCCCATACAATCAAAGAAA+AGG + chr2_3:53328456-53328475 None:intergenic 35.0%
! ATTCAACTACTTGAGAGCAT+AGG + chr2_3:53328481-53328500 None:intergenic 35.0%
!! CGTTGTTTCTGAACCAAATA+AGG + chr2_3:53328544-53328563 None:intergenic 35.0%
!!! AATCAGCCATTTTTTGCATC+AGG - chr2_3:53328628-53328647 Msa0299010:intron 35.0%
! TGCTTTACTCCTTTTATACG+AGG - chr2_3:53328707-53328726 Msa0299010:intron 35.0%
CAGTAAAGTCCTCGTATAAA+AGG + chr2_3:53328719-53328738 None:intergenic 35.0%
!!! GAGGACTTTACTGTTTTTTG+TGG - chr2_3:53328726-53328745 Msa0299010:intron 35.0%
! ATTTGAAATACCTTCGTGCT+TGG - chr2_3:53328866-53328885 Msa0299010:CDS 35.0%
!! TTCTCAGCATGCTTTATTTC+TGG - chr2_3:53329181-53329200 Msa0299010:CDS 35.0%
CTTAATGTCACTCTCTCTTA+AGG - chr2_3:53329228-53329247 Msa0299010:intron 35.0%
GTTGAATCAAATCTAGCTGT+AGG + chr2_3:53329309-53329328 None:intergenic 35.0%
AAGAGACACTATAGTCTATC+AGG + chr2_3:53329442-53329461 None:intergenic 35.0%
TTCAATAACATGACTGGAGA+AGG - chr2_3:53329533-53329552 Msa0299010:intron 35.0%
CACACTGAGTAATCATCTAA+TGG + chr2_3:53329559-53329578 None:intergenic 35.0%
! TAACTTGACTTTTCTATCGG+GGG + chr2_3:53329654-53329673 None:intergenic 35.0%
! GTAACTTGACTTTTCTATCG+GGG + chr2_3:53329655-53329674 None:intergenic 35.0%
!!! TTTTTTGTGTCACTACAGAC+TGG - chr2_3:53330145-53330164 Msa0299010:intron 35.0%
AAACCTGTGGAAAACAAAGA+TGG + chr2_3:53330183-53330202 None:intergenic 35.0%
TGAATGTTACACTATCTCAC+TGG - chr2_3:53330221-53330240 Msa0299010:intron 35.0%
AGACTCTTGAAATTGTGAAG+AGG - chr2_3:53330274-53330293 Msa0299010:intron 35.0%
CATGAGTCATTCCAATCAAT+AGG + chr2_3:53330317-53330336 None:intergenic 35.0%
TCAAAAACTCATTGTCCTTG+TGG + chr2_3:53330350-53330369 None:intergenic 35.0%
CATGCTACTATCAGATTGTT+GGG + chr2_3:53330448-53330467 None:intergenic 35.0%
TCATGCTACTATCAGATTGT+TGG + chr2_3:53330449-53330468 None:intergenic 35.0%
ACTCTTCTATGAATGTGCTT+AGG - chr2_3:53330538-53330557 Msa0299010:intron 35.0%
CTCTTCTATGAATGTGCTTA+GGG - chr2_3:53330539-53330558 Msa0299010:intron 35.0%
GTCCCCATAAACTTATAGTA+AGG - chr2_3:53330600-53330619 Msa0299010:intron 35.0%
!!! TTTTTTCTTGATACTCCCTC+TGG - chr2_3:53330738-53330757 Msa0299010:intron 35.0%
ATTTATGGTGTGTTTGCATG+TGG - chr2_3:53330856-53330875 Msa0299010:intron 35.0%
TGTGGAGATAAATAGTGAGT+AGG - chr2_3:53330874-53330893 Msa0299010:intron 35.0%
ATAGTGAGTAGGTATGAAGT+TGG - chr2_3:53330885-53330904 Msa0299010:intron 35.0%
TAGTGAGTAGGTATGAAGTT+GGG - chr2_3:53330886-53330905 Msa0299010:intron 35.0%
! ATTTAGGGTGTGTTTGTATG+TGG - chr2_3:53330951-53330970 Msa0299010:intron 35.0%
TGTGGAGATAAATAGTGAGT+AGG - chr2_3:53330874-53330893 Msa0299010:intron 35.0%
ATAGTGAGTAGGTATGAAGT+TGG - chr2_3:53330885-53330904 Msa0299010:intron 35.0%
TAGTGAGTAGGTATGAAGTT+GGG - chr2_3:53330886-53330905 Msa0299010:intron 35.0%
GTTAGGAACCACAAAAATAC+TGG + chr2_3:53331181-53331200 None:intergenic 35.0%
TATGGCCAAGGTACAAATAA+GGG + chr2_3:53331268-53331287 None:intergenic 35.0%
TTATGGCCAAGGTACAAATA+AGG + chr2_3:53331269-53331288 None:intergenic 35.0%
ATCACTACTGATCATGAGAA+GGG + chr2_3:53331360-53331379 None:intergenic 35.0%
! CTGTATTATTTTCCTCTTGC+AGG - chr2_3:53331419-53331438 Msa0299010:CDS 35.0%
!! CTAGGTTTGCTTTAGAAACT+GGG + chr2_3:53331522-53331541 None:intergenic 35.0%
! GTATCCTAAGAATCTTTTGC+AGG - chr2_3:53331721-53331740 Msa0299010:CDS 35.0%
TCTAATTAGGATATTGGTGG+GGG + chr2_3:53331759-53331778 None:intergenic 35.0%
CTCTAATTAGGATATTGGTG+GGG + chr2_3:53331760-53331779 None:intergenic 35.0%
AGAAGAAAGAAGAAGGAAGG+TGG + chr2_3:53326110-53326129 None:intergenic 40.0%
TCTTTCTCTCTCATCTCTTC+TGG - chr2_3:53326147-53326166 Msa0299010:three_prime_UTR 40.0%
TCTCATCTCTTCTGGATCTA+CGG - chr2_3:53326155-53326174 Msa0299010:three_prime_UTR 40.0%
! AATTAGGGTTTTTCTCCGGT+GGG + chr2_3:53326343-53326362 None:intergenic 40.0%
! TAATTAGGGTTTTTCTCCGG+TGG + chr2_3:53326344-53326363 None:intergenic 40.0%
CGGAGAAAAACCCTAATTAC+AGG - chr2_3:53326345-53326364 Msa0299010:three_prime_UTR 40.0%
ATTGATTATTGTGGAAGCGG+TGG - chr2_3:53326475-53326494 Msa0299010:exon 40.0%
TTGATGTTGGCAAGACGTTT+AGG - chr2_3:53326518-53326537 Msa0299010:intron 40.0%
TGATGTTGGCAAGACGTTTA+GGG - chr2_3:53326519-53326538 Msa0299010:intron 40.0%
! ATGAAGGATTATTAACGGGC+AGG - chr2_3:53326821-53326840 Msa0299010:intron 40.0%
!! CGCAGAGCATCTGATTTTTA+AGG - chr2_3:53326868-53326887 Msa0299010:intron 40.0%
GTATGCTGGTAAAGGTTTCT+AGG - chr2_3:53326908-53326927 Msa0299010:intron 40.0%
!! AATTTTAAGGGGTTCTGCTC+TGG + chr2_3:53327140-53327159 None:intergenic 40.0%
TGAATTTCTTCCTAGGAGCT+GGG + chr2_3:53327267-53327286 None:intergenic 40.0%
ATGAATTTCTTCCTAGGAGC+TGG + chr2_3:53327268-53327287 None:intergenic 40.0%
AGGAACATACCGTAGACAAA+AGG + chr2_3:53327404-53327423 None:intergenic 40.0%
!! TATCCATTGAATGCTGACTC+AGG + chr2_3:53327600-53327619 None:intergenic 40.0%
TGAGTCAGCATTCAATGGAT+AGG - chr2_3:53327599-53327618 Msa0299010:CDS 40.0%
CGATACTGCACATAATATCC+TGG + chr2_3:53328054-53328073 None:intergenic 40.0%
AGCATCTGAGTTCAGTGATT+GGG + chr2_3:53328123-53328142 None:intergenic 40.0%
AAGCATCTGAGTTCAGTGAT+TGG + chr2_3:53328124-53328143 None:intergenic 40.0%
! ACTGCTTTAGATTTGGGACT+TGG + chr2_3:53328254-53328273 None:intergenic 40.0%
GGAGTCACATTGCAATCTAT+GGG + chr2_3:53328409-53328428 None:intergenic 40.0%
AGGAGTCACATTGCAATCTA+TGG + chr2_3:53328410-53328429 None:intergenic 40.0%
CTCTCAAGTAGTTGAATCCA+TGG - chr2_3:53328484-53328503 Msa0299010:intron 40.0%
! TTTGGTTCAGAAACAACGCA+AGG - chr2_3:53328546-53328565 Msa0299010:intron 40.0%
AGGAAGGACAAGAAATACGA+AGG - chr2_3:53328566-53328585 Msa0299010:intron 40.0%
GGAAGGACAAGAAATACGAA+GGG - chr2_3:53328567-53328586 Msa0299010:intron 40.0%
! GTCATCAGTGATAATGTTCC+AGG + chr2_3:53328605-53328624 None:intergenic 40.0%
TTGTGGATGTAGGTAATGCA+TGG - chr2_3:53328743-53328762 Msa0299010:intron 40.0%
TGGAGAGGATTACATCTGTT+TGG - chr2_3:53328763-53328782 Msa0299010:intron 40.0%
GGAGAGGATTACATCTGTTT+GGG - chr2_3:53328764-53328783 Msa0299010:intron 40.0%
! TTTTGGTGAGAAAAGTAGGG+TGG - chr2_3:53328793-53328812 Msa0299010:intron 40.0%
ATACCATATTCTGTACTCGC+GGG + chr2_3:53328845-53328864 None:intergenic 40.0%
CATACCATATTCTGTACTCG+CGG + chr2_3:53328846-53328865 None:intergenic 40.0%
ATACATATGTCCAAGCACGA+AGG + chr2_3:53328879-53328898 None:intergenic 40.0%
TCAGTTCCATCTCCCAAAAT+TGG - chr2_3:53328903-53328922 Msa0299010:intron 40.0%
! CACACTCGTAGTCCAATTTT+GGG + chr2_3:53328918-53328937 None:intergenic 40.0%
AATGTCACTCTCTCTTAAGG+AGG - chr2_3:53329231-53329250 Msa0299010:intron 40.0%
ATGTCACTCTCTCTTAAGGA+GGG - chr2_3:53329232-53329251 Msa0299010:intron 40.0%
TAAACTGCTTCTTACTTCCC+TGG - chr2_3:53329278-53329297 Msa0299010:intron 40.0%
! AACTTGACTTTTCTATCGGG+GGG + chr2_3:53329653-53329672 None:intergenic 40.0%
TAAATGAGGAGCAAGAGACA+AGG - chr2_3:53329928-53329947 Msa0299010:intron 40.0%
AAGAGACAAGGATATTGCAG+AGG - chr2_3:53329940-53329959 Msa0299010:intron 40.0%
!!! TGTCCATCTTTGTTTTCCAC+AGG - chr2_3:53330177-53330196 Msa0299010:intron 40.0%
ATGTTACACTATCTCACTGG+TGG - chr2_3:53330224-53330243 Msa0299010:intron 40.0%
! CCAATCAATAGGGTTTGCTT+TGG + chr2_3:53330306-53330325 None:intergenic 40.0%
CCAAAGCAAACCCTATTGAT+TGG - chr2_3:53330303-53330322 Msa0299010:intron 40.0%
TCATGAGTTTGATCACCACA+AGG - chr2_3:53330332-53330351 Msa0299010:intron 40.0%
!! TTTTGAAAGAGTGGTCCAGA+AGG - chr2_3:53330364-53330383 Msa0299010:CDS 40.0%
TCTATGAATGTGCTTAGGGA+AGG - chr2_3:53330543-53330562 Msa0299010:intron 40.0%
! AATGATGATTTGGGTCAGGA+GGG + chr2_3:53330635-53330654 None:intergenic 40.0%
! AAATGATGATTTGGGTCAGG+AGG + chr2_3:53330636-53330655 None:intergenic 40.0%
!! TTGGTTAGTGGAAAAGCACT+TGG - chr2_3:53331071-53331090 Msa0299010:intron 40.0%
!! TGGTTAGTGGAAAAGCACTT+GGG - chr2_3:53331072-53331091 Msa0299010:intron 40.0%
!! AGTTGATAAAATTTGCGGGG+TGG - chr2_3:53331122-53331141 Msa0299010:intron 40.0%
AAGTGACACTACACTTTCAC+TGG - chr2_3:53331154-53331173 Msa0299010:intron 40.0%
!!! TAAGGGTATGCTGTTTTAGG+AGG + chr2_3:53331228-53331247 None:intergenic 40.0%
CCAAGGTACAAATAAGGGTA+TGG + chr2_3:53331263-53331282 None:intergenic 40.0%
! CCATACCCTTATTTGTACCT+TGG - chr2_3:53331260-53331279 Msa0299010:intron 40.0%
TCACTACTGATCATGAGAAG+GGG + chr2_3:53331359-53331378 None:intergenic 40.0%
GATCACTACTGATCATGAGA+AGG + chr2_3:53331361-53331380 None:intergenic 40.0%
!! CCTAGGTTTGCTTTAGAAAC+TGG + chr2_3:53331523-53331542 None:intergenic 40.0%
!! CCAGTTTCTAAAGCAAACCT+AGG - chr2_3:53331520-53331539 Msa0299010:intron 40.0%
TGACCCTGCAAAAGATTCTT+AGG + chr2_3:53331728-53331747 None:intergenic 40.0%
CTAATTAGGATATTGGTGGG+GGG + chr2_3:53331758-53331777 None:intergenic 40.0%
!! AAGATCAACGCCGATTCAGA+GGG + chr2_3:53326224-53326243 None:intergenic 45.0%
!! AAAGATCAACGCCGATTCAG+AGG + chr2_3:53326225-53326244 None:intergenic 45.0%
!! GAATCGGCGTTGATCTTTCT+CGG - chr2_3:53326227-53326246 Msa0299010:three_prime_UTR 45.0%
AAAATCAGATGCTCTGCGAC+AGG + chr2_3:53326866-53326885 None:intergenic 45.0%
! GGCCCTTTTCTTTCTCTTCA+TGG + chr2_3:53326939-53326958 None:intergenic 45.0%
GAAGAGAAAGAAAAGGGCCA+TGG - chr2_3:53326940-53326959 Msa0299010:intron 45.0%
!! GTTAATTAGTGGTGGACTGG+TGG + chr2_3:53327067-53327086 None:intergenic 45.0%
CTCGTACATCATCCAATCCA+AGG + chr2_3:53327528-53327547 None:intergenic 45.0%
!! AATGCTGACTCAGGTAGATG+GGG + chr2_3:53327591-53327610 None:intergenic 45.0%
!! GAATGCTGACTCAGGTAGAT+GGG + chr2_3:53327592-53327611 None:intergenic 45.0%
!! TGAATGCTGACTCAGGTAGA+TGG + chr2_3:53327593-53327612 None:intergenic 45.0%
CTACCTGAGTCAGCATTCAA+TGG - chr2_3:53327594-53327613 Msa0299010:CDS 45.0%
AAACACACAACGGTCACTAG+AGG + chr2_3:53327627-53327646 None:intergenic 45.0%
! CAGTGATTGGGAAGTACACA+CGG + chr2_3:53328111-53328130 None:intergenic 45.0%
GTTCAGAAACAACGCAAGGA+AGG - chr2_3:53328550-53328569 Msa0299010:intron 45.0%
AATACGAAGGGTTGCTCAGA+TGG - chr2_3:53328579-53328598 Msa0299010:intron 45.0%
GATGTAGGTAATGCATGGAG+AGG - chr2_3:53328748-53328767 Msa0299010:intron 45.0%
ATTCCCGCGAGTACAGAATA+TGG - chr2_3:53328839-53328858 Msa0299010:intron 45.0%
!! CGTAGTCCAATTTTGGGAGA+TGG + chr2_3:53328912-53328931 None:intergenic 45.0%
! GCACACTCGTAGTCCAATTT+TGG + chr2_3:53328919-53328938 None:intergenic 45.0%
GTCATTTCGAAAAGTGGAGC+TGG - chr2_3:53329048-53329067 Msa0299010:intron 45.0%
TGTCACTCTCTCTTAAGGAG+GGG - chr2_3:53329233-53329252 Msa0299010:intron 45.0%
TCTAGCTGTAGGAAACACCA+GGG + chr2_3:53329298-53329317 None:intergenic 45.0%
ATCTAGCTGTAGGAAACACC+AGG + chr2_3:53329299-53329318 None:intergenic 45.0%
TGTGCTTAGGGAAGGAATTC+CGG - chr2_3:53330551-53330570 Msa0299010:intron 45.0%
GGATCCCTCATTCTAATCAG+CGG - chr2_3:53330692-53330711 Msa0299010:intron 45.0%
! CATGCCGCTGATTAGAATGA+GGG + chr2_3:53330699-53330718 None:intergenic 45.0%
GGGTGAGTAGAAAACTGAGT+AGG - chr2_3:53331001-53331020 Msa0299010:intron 45.0%
!! TCACTGGCCCAGTATTTTTG+TGG - chr2_3:53331170-53331189 Msa0299010:intron 45.0%
GCTCATGATGATTATGGCCA+AGG + chr2_3:53331280-53331299 None:intergenic 45.0%
!! CAGCAAAACTGTTGGTTCCT+AGG + chr2_3:53331540-53331559 None:intergenic 45.0%
! CTAGGAACCAACAGTTTTGC+TGG - chr2_3:53331538-53331557 Msa0299010:intron 45.0%
! GAACCAACAGTTTTGCTGGA+AGG - chr2_3:53331542-53331561 Msa0299010:intron 45.0%
!! TAAAAATATACATTATTATT+AGG - chr2_3:53326764-53326783 Msa0299010:intron 5.0%
! GCGTTGATCTTTCTCGGAAC+AGG - chr2_3:53326233-53326252 Msa0299010:three_prime_UTR 50.0%
CGGAACAGGCTGTTCAAGTA+TGG - chr2_3:53326247-53326266 Msa0299010:three_prime_UTR 50.0%
ACGGAACAAGGAGGATCAGA+GGG + chr2_3:53326299-53326318 None:intergenic 50.0%
AACGGAACAAGGAGGATCAG+AGG + chr2_3:53326300-53326319 None:intergenic 50.0%
CGACAATGACTGAGCGCAAA+CGG + chr2_3:53326318-53326337 None:intergenic 50.0%
TCAGTCATTGTCGATCCCAC+CGG - chr2_3:53326325-53326344 Msa0299010:three_prime_UTR 50.0%
TTAGGGAGACTGTGCTTCGA+TGG - chr2_3:53326536-53326555 Msa0299010:intron 50.0%
ATTTCTTCCTAGGAGCTGGG+AGG + chr2_3:53327264-53327283 None:intergenic 50.0%
GAACATGCTGATGCAGTCCT+TGG - chr2_3:53327508-53327527 Msa0299010:intron 50.0%
TGCTGATGCAGTCCTTGGAT+TGG - chr2_3:53327513-53327532 Msa0299010:intron 50.0%
!! ATGCTGACTCAGGTAGATGG+GGG + chr2_3:53327590-53327609 None:intergenic 50.0%
GAAAAGTGGAGCTGGACAGT+TGG - chr2_3:53329056-53329075 Msa0299010:intron 50.0%
TGCAGAGGACTCTAACCTTC+TGG - chr2_3:53329955-53329974 Msa0299010:intron 50.0%
!! GGACTCTAACCTTCTGGTTC+CGG - chr2_3:53329961-53329980 Msa0299010:intron 50.0%
CCATCATGAGAAAGCTGCAC+CGG + chr2_3:53330573-53330592 None:intergenic 50.0%
! GCATGCCGCTGATTAGAATG+AGG + chr2_3:53330700-53330719 None:intergenic 50.0%
CTACTGATCATGAGAAGGGG+AGG + chr2_3:53331356-53331375 None:intergenic 50.0%
CACATGCTTTACCCTGCAAG+AGG + chr2_3:53331434-53331453 None:intergenic 50.0%
! CCAACAGTTTTGCTGGAAGG+CGG - chr2_3:53331545-53331564 Msa0299010:intron 50.0%
CGGAACTCCTCCCTCTGAAT+CGG - chr2_3:53326211-53326230 Msa0299010:three_prime_UTR 55.0%
!! ATCAACGCCGATTCAGAGGG+AGG + chr2_3:53326221-53326240 None:intergenic 55.0%
TGAGCGCAAACGGAACAAGG+AGG + chr2_3:53326308-53326327 None:intergenic 55.0%
GACTGAGCGCAAACGGAACA+AGG + chr2_3:53326311-53326330 None:intergenic 55.0%
GGCGCTGTTCTGTTCTGTAC+AGG - chr2_3:53327198-53327217 Msa0299010:intron 55.0%
CTTACATCCTCCCAGCTCCT+AGG - chr2_3:53327254-53327273 Msa0299010:intron 55.0%
TGACTCAGGTAGATGGGGGT+GGG + chr2_3:53327586-53327605 None:intergenic 55.0%
CTCGAACATCCGGAACCAGA+AGG + chr2_3:53329973-53329992 None:intergenic 55.0%
!! CTTCTGGTTCCGGATGTTCG+AGG - chr2_3:53329971-53329990 Msa0299010:intron 55.0%
CCGGTGCAGCTTTCTCATGA+TGG - chr2_3:53330570-53330589 Msa0299010:intron 55.0%
CCGCCTTCCAGCAAAACTGT+TGG + chr2_3:53331548-53331567 None:intergenic 55.0%
GACGCCATGGCCACATCCAA+CGG - chr2_3:53326179-53326198 Msa0299010:three_prime_UTR 60.0%
!! ACATCCAACGGCACCGACGA+CGG - chr2_3:53326191-53326210 Msa0299010:three_prime_UTR 60.0%
AGAGGGAGGAGTTCCGTCGT+CGG + chr2_3:53326207-53326226 None:intergenic 60.0%
CGTGGGACTCGCGTGTCAAA+AGG + chr2_3:53326702-53326721 None:intergenic 60.0%
CTGACTCAGGTAGATGGGGG+TGG + chr2_3:53327587-53327606 None:intergenic 60.0%
! GGGAAGTACACACGGCACAG+TGG + chr2_3:53328103-53328122 None:intergenic 60.0%
GAAGGGTTGCTCAGATGGCC+TGG - chr2_3:53328584-53328603 Msa0299010:intron 60.0%
TCCGGATGTTCGAGGAACGC+AGG - chr2_3:53329979-53329998 Msa0299010:intron 60.0%
GCCTGCGTTCCTCGAACATC+CGG + chr2_3:53329983-53330002 None:intergenic 60.0%
CTGGATCTACGGCGACGCCA+TGG - chr2_3:53326166-53326185 Msa0299010:three_prime_UTR 65.0%
!! GGTGCCGTTGGATGTGGCCA+TGG + chr2_3:53326186-53326205 None:intergenic 65.0%
!! GTCGTCGGTGCCGTTGGATG+TGG + chr2_3:53326192-53326211 None:intergenic 65.0%
!! AGTTCCGTCGTCGGTGCCGT+TGG + chr2_3:53326198-53326217 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 53326061 53331901 53326061 ID=Msa0299010;Name=Msa0299010
chr2_3 mRNA 53326061 53331901 53326061 ID=Msa0299010-mRNA-1;Parent=Msa0299010;Name=Msa0299010-mRNA-1;_AED=0.25;_eAED=0.25;_QI=124|0.87|1|1|0.87|0.88|9|424|313
chr2_3 exon 53326061 53326521 53326061 ID=Msa0299010-mRNA-1:exon:17159;Parent=Msa0299010-mRNA-1
chr2_3 exon 53327577 53327686 53327577 ID=Msa0299010-mRNA-1:exon:17158;Parent=Msa0299010-mRNA-1
chr2_3 exon 53327764 53327799 53327764 ID=Msa0299010-mRNA-1:exon:17157;Parent=Msa0299010-mRNA-1
chr2_3 exon 53328855 53328913 53328855 ID=Msa0299010-mRNA-1:exon:17156;Parent=Msa0299010-mRNA-1
chr2_3 exon 53329102 53329207 53329102 ID=Msa0299010-mRNA-1:exon:17155;Parent=Msa0299010-mRNA-1
chr2_3 exon 53329290 53329437 53329290 ID=Msa0299010-mRNA-1:exon:17154;Parent=Msa0299010-mRNA-1
chr2_3 exon 53330342 53330469 53330342 ID=Msa0299010-mRNA-1:exon:17153;Parent=Msa0299010-mRNA-1
chr2_3 exon 53331371 53331506 53331371 ID=Msa0299010-mRNA-1:exon:17152;Parent=Msa0299010-mRNA-1
chr2_3 exon 53331596 53331901 53331596 ID=Msa0299010-mRNA-1:exon:17151;Parent=Msa0299010-mRNA-1
chr2_3 five_prime_UTR 53331778 53331901 53331778 ID=Msa0299010-mRNA-1:five_prime_utr;Parent=Msa0299010-mRNA-1
chr2_3 CDS 53331596 53331777 53331596 ID=Msa0299010-mRNA-1:cds;Parent=Msa0299010-mRNA-1
chr2_3 CDS 53331371 53331506 53331371 ID=Msa0299010-mRNA-1:cds;Parent=Msa0299010-mRNA-1
chr2_3 CDS 53330342 53330469 53330342 ID=Msa0299010-mRNA-1:cds;Parent=Msa0299010-mRNA-1
chr2_3 CDS 53329290 53329437 53329290 ID=Msa0299010-mRNA-1:cds;Parent=Msa0299010-mRNA-1
chr2_3 CDS 53329102 53329207 53329102 ID=Msa0299010-mRNA-1:cds;Parent=Msa0299010-mRNA-1
chr2_3 CDS 53328855 53328913 53328855 ID=Msa0299010-mRNA-1:cds;Parent=Msa0299010-mRNA-1
chr2_3 CDS 53327764 53327799 53327764 ID=Msa0299010-mRNA-1:cds;Parent=Msa0299010-mRNA-1
chr2_3 CDS 53327577 53327686 53327577 ID=Msa0299010-mRNA-1:cds;Parent=Msa0299010-mRNA-1
chr2_3 CDS 53326485 53326521 53326485 ID=Msa0299010-mRNA-1:cds;Parent=Msa0299010-mRNA-1
chr2_3 three_prime_UTR 53326061 53326484 53326061 ID=Msa0299010-mRNA-1:three_prime_utr;Parent=Msa0299010-mRNA-1
Gene Sequence

>Msa0299010

ATGGCCACATCCAACGGCACCGACGACGGAACTCCTCCCTCTGAATCGGCGTTGATCTTTCTCGGAACAGGCTGTTCAAGTATGGTTCCCAATGTACTGTGTCTCATCAATCCCTCTGATCCTCCTTGTTCCGTTTGCGCTCAGTCATTGTCGATCCCACCGGAGAAAAACCCTAATTACAGGTGTAATACTTCGATGTTAATTGATTATTGTGGAAGCGGTGGTAATCATAATTATATATTGATTGATGTTGGCAAGACGTTTAGGGAGACTGTGCTTCGATGGTTTGTTCATCATCGGATTCCAAGAATCGATTCTATTATTTTGACTCATGAACATGCTGATGCAGTCCTTGGATTGGATGATGTACGAGCTGTGCAGCCTTTTAGTCCAACAAATGATATTGATCCCACCCCCATCTACCTGAGTCAGCATTCAATGGATAGCATAGAAGAGAAGTTTCCTTATTTGGTTCAGAAACAACGCAAGGAAGGACAAGAAATACGAAGGGTTGCTCAGATGGCCTGGAACATTATCACTGATGACTGCAATCAGCCATTTTTTGCATCAGGATTGAAATTCACTCCTTTACCAGTAATGCATGGAGAGGATTACATCTGTTTGGGATTTCTTTTTGGTGAGAAAAGTAGGGTGGCTTATATATCTGATGTTTCACGGATTCCCGCGAGTACAGAATATGTCATTTCGAAAAGTGGAGCTGGACAGTTGGATCTTCTAATATTGGATTCATTATATAGGACTGGATCGCATAATGTCCATCTTTGTTTTCCACAGACTCTTGAAATTGTGAAGAGGTTGTGTCCAAAGCAAACCCTATTGATTGGAATGACTCATGAGTTTGATCACCACAAGGACAATGAGTTTTTGAAAGAGTGGTCCAGAAGGGTAAAGCATGTGACAATCTATACCATATACAGTTGA

Protein sequence

>Msa0299010

MATSNGTDDGTPPSESALIFLGTGCSSMVPNVLCLINPSDPPCSVCAQSLSIPPEKNPNYRCNTSMLIDYCGSGGNHNYILIDVGKTFRETVLRWFVHHRIPRIDSIILTHEHADAVLGLDDVRAVQPFSPTNDIDPTPIYLSQHSMDSIEEKFPYLVQKQRKEGQEIRRVAQMAWNIITDDCNQPFFASGLKFTPLPVMHGEDYICLGFLFGEKSRVAYISDVSRIPASTEYVISKSGAGQLDLLILDSLYRTGSHNVHLCFPQTLEIVKRLCPKQTLLIGMTHEFDHHKDNEFLKEWSRRVKHVTIYTIYS*