AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0194520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0194520 MtrunA17_Chr2g0285411 99.338 302 2 0 1 302 1 302 0.0 629
Msa0194520 MtrunA17_Chr8g0342441 40.351 285 146 10 15 298 58 319 3.87e-57 187
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0194520 AT1G30300.1 75.410 305 72 1 1 302 2 306 4.68e-178 495
Msa0194520 AT1G30300.3 75.410 305 72 1 1 302 2 306 4.68e-178 495
Msa0194520 AT1G30300.2 75.410 305 72 1 1 302 2 306 4.68e-178 495
Msa0194520 AT1G30300.4 75.410 305 72 1 1 302 2 306 4.68e-178 495
Msa0194520 AT4G03610.4 64.821 307 96 5 1 302 1 300 4.31e-142 404
Msa0194520 AT4G03610.2 64.111 287 91 5 1 282 1 280 9.65e-130 372
Msa0194520 AT4G03610.1 61.564 307 91 6 1 302 1 285 6.42e-129 370
Msa0194520 AT4G03610.3 66.008 253 76 4 1 250 1 246 6.28e-117 337
Msa0194520 AT3G13800.1 40.493 284 146 10 16 298 78 339 3.92e-53 178
Msa0194520 AT3G13800.4 40.493 284 146 10 16 298 78 339 3.92e-53 178
Msa0194520 AT3G13800.3 40.502 279 143 10 21 298 1 257 9.20e-52 172
Msa0194520 AT3G13800.2 40.502 279 143 10 21 298 1 257 9.20e-52 172

Find 101 sgRNAs with CRISPR-Local

Find 388 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAGAGAAGTTTCCTTATT+TGG 0.135750 2_1:+10729637 Msa0194520:CDS
GAAAGAGAGTACCTGTAATT+AGG 0.152242 2_1:-10727465 None:intergenic
TCTTTCTCTCTCATCTCTTC+TGG 0.177721 2_1:+10727256 Msa0194520:five_prime_UTR
CGTTGTTTCTGAACCAAATA+AGG 0.179452 2_1:-10729650 None:intergenic
ATATCATTTGTTGGACTAAA+AGG 0.183530 2_1:-10728665 None:intergenic
ACAGTTGGATCTTCTAATAT+TGG 0.247221 2_1:+10730180 Msa0194520:CDS
GGGCATCTTTGAAAATATTA+AGG 0.254973 2_1:-10732609 None:intergenic
CCTAGGTTTGCTTTAGAAAC+TGG 0.258915 2_1:-10732630 None:intergenic
TAATATTGGATTCATTATAT+AGG 0.272370 2_1:+10730194 Msa0194520:CDS
AAAAGATTACATCTCTAATT+AGG 0.275025 2_1:-10732879 None:intergenic
TACATCTCTAATTAGGATAT+TGG 0.285182 2_1:-10732872 None:intergenic
TTGATGTTGGCAAGACGTTT+AGG 0.306067 2_1:+10727627 Msa0194520:CDS
TTGATCTTATTTAGATTCAT+TGG 0.307127 2_1:+10732584 Msa0194520:exon
TAAATAAGATCAACTGTATA+TGG 0.310412 2_1:-10732574 None:intergenic
TGACCCTGCAAAAGATTCTT+AGG 0.311116 2_1:-10732835 None:intergenic
TAACTCACAGAATCGATTCT+TGG 0.317245 2_1:-10727686 None:intergenic
AATATTGGATTCATTATATA+GGG 0.318957 2_1:+10730195 Msa0194520:CDS
CAGCAAAACTGTTGGTTCCT+AGG 0.324849 2_1:-10732647 None:intergenic
AAAGAGAGTACCTGTAATTA+GGG 0.331055 2_1:-10727464 None:intergenic
CGGAACAGGCTGTTCAAGTA+TGG 0.338495 2_1:+10727356 Msa0194520:CDS
TGAATGCTGACTCAGGTAGA+TGG 0.349627 2_1:-10728699 None:intergenic
TGGAGAGGATTACATCTGTT+TGG 0.350777 2_1:+10729872 Msa0194520:CDS
TGATGTTGGCAAGACGTTTA+GGG 0.356782 2_1:+10727628 Msa0194520:CDS
CATGAGTCATTCCAATCAAT+AGG 0.362542 2_1:-10731424 None:intergenic
GGAGAGGATTACATCTGTTT+GGG 0.373515 2_1:+10729873 Msa0194520:CDS
GTCATCAGTGATAATGTTCC+AGG 0.377002 2_1:-10729711 None:intergenic
GCGTTGATCTTTCTCGGAAC+AGG 0.380171 2_1:+10727342 Msa0194520:CDS
TTTACAGTCATTTCGAAAAG+TGG 0.389227 2_1:+10730151 Msa0194520:intron
GAATCGGCGTTGATCTTTCT+CGG 0.402893 2_1:+10727336 Msa0194520:CDS
CCAATCAATAGGGTTTGCTT+TGG 0.405132 2_1:-10731413 None:intergenic
CGACAATGACTGAGCGCAAA+CGG 0.414803 2_1:-10727424 None:intergenic
TGATTGTTATAAATAATAAA+TGG 0.427899 2_1:+10732948 Msa0194520:three_prime_UTR
CTTATATATCTGATGTTTCA+CGG 0.432628 2_1:+10729925 Msa0194520:CDS
CCAAAGCAAACCCTATTGAT+TGG 0.435743 2_1:+10731413 Msa0194520:CDS
GAAAATGAGAAGAAAGAAGA+AGG 0.447368 2_1:-10727223 None:intergenic
ATGAGTCATTCCAATCAATA+GGG 0.448438 2_1:-10731423 None:intergenic
TTCGATGGTTTGTTCATCAT+CGG 0.450026 2_1:+10727660 Msa0194520:CDS
ATTCCCGCGAGTACAGAATA+TGG 0.455050 2_1:+10729948 Msa0194520:CDS
CTAGGTTTGCTTTAGAAACT+GGG 0.456159 2_1:-10732629 None:intergenic
GTGGGATCAATATCATTTGT+TGG 0.461356 2_1:-10728674 None:intergenic
GAAGGGTTGCTCAGATGGCC+TGG 0.469919 2_1:+10729693 Msa0194520:CDS
AATTATATATTGATTGATGT+TGG 0.471348 2_1:+10727614 Msa0194520:CDS
CTACCTGAGTCAGCATTCAA+TGG 0.481362 2_1:+10728703 Msa0194520:CDS
GTCGTCGGTGCCGTTGGATG+TGG 0.481521 2_1:-10727298 None:intergenic
GAACATGCTGATGCAGTCCT+TGG 0.486458 2_1:+10728617 Msa0194520:CDS
GAATGCTGACTCAGGTAGAT+GGG 0.487485 2_1:-10728698 None:intergenic
AGTTCCGTCGTCGGTGCCGT+TGG 0.490322 2_1:-10727304 None:intergenic
TTGATGAGACACAGTACATT+GGG 0.499967 2_1:-10727381 None:intergenic
ATAGTGCAATTAACTGGTAA+AGG 0.503581 2_1:-10729773 None:intergenic
ATCTCTAATTAGGATATTGG+TGG 0.503723 2_1:-10732869 None:intergenic
AATACGAAGGGTTGCTCAGA+TGG 0.505761 2_1:+10729688 Msa0194520:CDS
TCTCATCTCTTCTGGATCTA+CGG 0.507309 2_1:+10727264 Msa0194520:five_prime_UTR
GACGCCATGGCCACATCCAA+CGG 0.511458 2_1:+10727288 Msa0194520:exon
ATGAGAAGAAAGAAGAAGGA+AGG 0.515376 2_1:-10727219 None:intergenic
TGCTGATGCAGTCCTTGGAT+TGG 0.516613 2_1:+10728622 Msa0194520:CDS
AGAAGAAAGAAGAAGGAAGG+TGG 0.521916 2_1:-10727216 None:intergenic
GTCATTTCGAAAAGTGGAGC+TGG 0.524520 2_1:+10730157 Msa0194520:intron
AAACCTGTGGAAAACAAAGA+TGG 0.525306 2_1:-10731290 None:intergenic
CGGAACTCCTCCCTCTGAAT+CGG 0.526733 2_1:+10727320 Msa0194520:CDS
AAAGATCAACGCCGATTCAG+AGG 0.529103 2_1:-10727331 None:intergenic
TTAATTGATTATTGTGGAAG+CGG 0.535963 2_1:+10727581 Msa0194520:CDS
TCTAATTAGGATATTGGTGG+GGG 0.540434 2_1:-10732866 None:intergenic
GACTGAGCGCAAACGGAACA+AGG 0.540973 2_1:-10727417 None:intergenic
GGTGCCGTTGGATGTGGCCA+TGG 0.542231 2_1:-10727292 None:intergenic
CTGGATCTACGGCGACGCCA+TGG 0.542253 2_1:+10727275 Msa0194520:exon
TCTCTAATTAGGATATTGGT+GGG 0.545609 2_1:-10732868 None:intergenic
TTAGGGAGACTGTGCTTCGA+TGG 0.547897 2_1:+10727645 Msa0194520:CDS
ACATCCAACGGCACCGACGA+CGG 0.551645 2_1:+10727300 Msa0194520:CDS
GAAAAGTGGAGCTGGACAGT+TGG 0.552369 2_1:+10730165 Msa0194520:CDS
CTCTAATTAGGATATTGGTG+GGG 0.557419 2_1:-10732867 None:intergenic
AAAAGATTCTTAGGATACAC+TGG 0.570189 2_1:-10732826 None:intergenic
AGCAGAAGCAACATAGAATG+AGG 0.572322 2_1:-10733003 None:intergenic
ATTGATGAGACACAGTACAT+TGG 0.574414 2_1:-10727382 None:intergenic
GTTCAGAAACAACGCAAGGA+AGG 0.576002 2_1:+10729659 Msa0194520:CDS
TGAGTCAGCATTCAATGGAT+AGG 0.583236 2_1:+10728708 Msa0194520:CDS
CCGCCTTCCAGCAAAACTGT+TGG 0.583823 2_1:-10732655 None:intergenic
TATCCATTGAATGCTGACTC+AGG 0.588545 2_1:-10728706 None:intergenic
AAGATCAACGCCGATTCAGA+GGG 0.594996 2_1:-10727330 None:intergenic
TTGTGGATGTAGGTAATGCA+TGG 0.597231 2_1:+10729852 Msa0194520:intron
TCGATGTTAATTGATTATTG+TGG 0.600435 2_1:+10727575 Msa0194520:CDS
AGACTCTTGAAATTGTGAAG+AGG 0.603087 2_1:+10731384 Msa0194520:intron
ATTGATTATTGTGGAAGCGG+TGG 0.603095 2_1:+10727584 Msa0194520:CDS
TCAGTCATTGTCGATCCCAC+CGG 0.604108 2_1:+10727434 Msa0194520:CDS
ATCAACGCCGATTCAGAGGG+AGG 0.605019 2_1:-10727327 None:intergenic
AGAGGGAGGAGTTCCGTCGT+CGG 0.610126 2_1:-10727313 None:intergenic
ATACCATATTCTGTACTCGC+GGG 0.613014 2_1:-10729951 None:intergenic
ACGGAACAAGGAGGATCAGA+GGG 0.613154 2_1:-10727405 None:intergenic
AACGGAACAAGGAGGATCAG+AGG 0.614159 2_1:-10727406 None:intergenic
CTCGTACATCATCCAATCCA+AGG 0.621489 2_1:-10728634 None:intergenic
CCAGTTTCTAAAGCAAACCT+AGG 0.630294 2_1:+10732630 Msa0194520:three_prime_UTR
AGGAAGGACAAGAAATACGA+AGG 0.640963 2_1:+10729675 Msa0194520:CDS
CATACCATATTCTGTACTCG+CGG 0.641738 2_1:-10729952 None:intergenic
ACTTGTGATATTATAGTGTG+AGG 0.645922 2_1:+10732701 Msa0194520:three_prime_UTR
TTTGGTTCAGAAACAACGCA+AGG 0.660626 2_1:+10729655 Msa0194520:CDS
GGAAGGACAAGAAATACGAA+GGG 0.662583 2_1:+10729676 Msa0194520:CDS
AATGCTGACTCAGGTAGATG+GGG 0.684919 2_1:-10728697 None:intergenic
CTAATTAGGATATTGGTGGG+GGG 0.709677 2_1:-10732865 None:intergenic
GATGTAGGTAATGCATGGAG+AGG 0.710977 2_1:+10729857 Msa0194520:intron
TCATGAGTTTGATCACCACA+AGG 0.734521 2_1:+10731442 Msa0194520:CDS
ATGCTGACTCAGGTAGATGG+GGG 0.739738 2_1:-10728696 None:intergenic
TGAGCGCAAACGGAACAAGG+AGG 0.758779 2_1:-10727414 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTAGATATTCATTATAT+AGG + chr2_1:10730261-10730280 Msa0194520:intron 10.0%
!! ATTTAGATATTCATTATATA+GGG + chr2_1:10730262-10730281 Msa0194520:intron 10.0%
!! ATTTAAACTAATTAACTAAT+CGG + chr2_1:10731202-10731221 Msa0194520:intron 10.0%
!! TGATTGTTATAAATAATAAA+TGG + chr2_1:10732948-10732967 Msa0194520:three_prime_UTR 10.0%
!!! AATTATATATTGATTGATGT+TGG + chr2_1:10727614-10727633 Msa0194520:CDS 15.0%
!! AAAATAGATAAATGACTATT+AGG + chr2_1:10727845-10727864 Msa0194520:intron 15.0%
!! ATAACTAATATTAACGATAA+TGG - chr2_1:10728894-10728913 None:intergenic 15.0%
!! TATTGTTAAAGATACATATT+GGG - chr2_1:10729031-10729050 None:intergenic 15.0%
!! TTATTGTTAAAGATACATAT+TGG - chr2_1:10729032-10729051 None:intergenic 15.0%
!! TTTCAATTATTTATTGTTAC+TGG - chr2_1:10729394-10729413 None:intergenic 15.0%
!! TAATATTGGATTCATTATAT+AGG + chr2_1:10730194-10730213 Msa0194520:CDS 15.0%
!! AATATTGGATTCATTATATA+GGG + chr2_1:10730195-10730214 Msa0194520:CDS 15.0%
!!! TATATTTTTCCTATTTTCAA+AGG - chr2_1:10730500-10730519 None:intergenic 15.0%
!!! TAGATGCTTTAAAAAATTTA+GGG + chr2_1:10730703-10730722 Msa0194520:intron 15.0%
!! TTTAAAAAATTTAGGGATAT+CGG + chr2_1:10730710-10730729 Msa0194520:intron 15.0%
!! TAATACTCCAATAATTAATT+GGG - chr2_1:10730880-10730899 None:intergenic 15.0%
!! TTAATACTCCAATAATTAAT+TGG - chr2_1:10730881-10730900 None:intergenic 15.0%
!!! GATTAGTTAATTAGTTTAAA+TGG - chr2_1:10731203-10731222 None:intergenic 15.0%
!! TTTAAACTAATTAACTAATC+GGG + chr2_1:10731203-10731222 Msa0194520:intron 15.0%
!!! ATATTTGACTTATTTACAAA+TGG - chr2_1:10731503-10731522 None:intergenic 15.0%
!! TCTTGATACTATAATATTAT+TGG + chr2_1:10731883-10731902 Msa0194520:intron 15.0%
!!! TAATTTTTCACTTTTTTGTT+TGG + chr2_1:10732142-10732161 Msa0194520:intron 15.0%
!! AAAAGATGAAGGATTATTAA+CGG + chr2_1:10727925-10727944 Msa0194520:intron 20.0%
!! TAGCATCAAAATATTTCTTA+AGG + chr2_1:10728075-10728094 Msa0194520:intron 20.0%
!! TCAATTTCTTTGTTAATTAG+TGG - chr2_1:10728187-10728206 None:intergenic 20.0%
!!! AGAATAAAAAACTAGTTCTT+TGG + chr2_1:10728568-10728587 Msa0194520:intron 20.0%
!!! ATCTTAAGATTTGTTTATGT+AGG - chr2_1:10728816-10728835 None:intergenic 20.0%
!!! CAATTAATGAACTTTTCATT+TGG - chr2_1:10729307-10729326 None:intergenic 20.0%
!!! AGTAAAGCATTCTTAATATA+AGG - chr2_1:10729805-10729824 None:intergenic 20.0%
!! ATCTATTTGTTTCATCATTT+AGG + chr2_1:10730061-10730080 Msa0194520:intron 20.0%
!! TCTATTTGTTTCATCATTTA+GGG + chr2_1:10730062-10730081 Msa0194520:intron 20.0%
!!! TTCTGTTGTCAATTTTTTTT+GGG + chr2_1:10730225-10730244 Msa0194520:intron 20.0%
!!! CTAAATTTTTTAAAGCATCT+AGG - chr2_1:10730704-10730723 None:intergenic 20.0%
!!! CTAGATGCTTTAAAAAATTT+AGG + chr2_1:10730702-10730721 Msa0194520:intron 20.0%
!! AATAGAACCCAATTAATTAT+TGG + chr2_1:10730870-10730889 Msa0194520:intron 20.0%
!! TTCCATTGATATTTATATAC+AGG - chr2_1:10731008-10731027 None:intergenic 20.0%
!!! TAAAAATAGAAGCTTGTTTT+TGG - chr2_1:10731130-10731149 None:intergenic 20.0%
!! GATAGGATATATAAACTATA+GGG - chr2_1:10731160-10731179 None:intergenic 20.0%
!! TGATAGGATATATAAACTAT+AGG - chr2_1:10731161-10731180 None:intergenic 20.0%
!!! AGTTAATTAGTTTAAATGGT+TGG - chr2_1:10731199-10731218 None:intergenic 20.0%
!! GGTGGTAAAATATTATTAAT+TGG + chr2_1:10731352-10731371 Msa0194520:intron 20.0%
!! GATGAAAAAAATGATGATTT+GGG - chr2_1:10731754-10731773 None:intergenic 20.0%
!! TGATGAAAAAAATGATGATT+TGG - chr2_1:10731755-10731774 None:intergenic 20.0%
!!! ATCATTTTTTTCATCATGAA+CGG + chr2_1:10731759-10731778 Msa0194520:intron 20.0%
!!! ATTGAAGTTGATAAAATTTG+CGG + chr2_1:10732227-10732246 Msa0194520:intron 20.0%
!! TAAATAAGATCAACTGTATA+TGG - chr2_1:10732577-10732596 None:intergenic 20.0%
!!! TTGATCTTATTTAGATTCAT+TGG + chr2_1:10732584-10732603 Msa0194520:exon 20.0%
!! AAAAGATTACATCTCTAATT+AGG - chr2_1:10732882-10732901 None:intergenic 20.0%
! TCGATGTTAATTGATTATTG+TGG + chr2_1:10727575-10727594 Msa0194520:CDS 25.0%
! TTAATTGATTATTGTGGAAG+CGG + chr2_1:10727581-10727600 Msa0194520:CDS 25.0%
! AAAGATGAAGGATTATTAAC+GGG + chr2_1:10727926-10727945 Msa0194520:intron 25.0%
! ATTTCTTTGTTAATTAGTGG+TGG - chr2_1:10728184-10728203 None:intergenic 25.0%
!! ATGGCAACTAGAAATTTTAA+GGG - chr2_1:10728261-10728280 None:intergenic 25.0%
!! AATGGCAACTAGAAATTTTA+AGG - chr2_1:10728262-10728281 None:intergenic 25.0%
!!! TTAAAATTTCTAGTTGCCAT+TGG + chr2_1:10728261-10728280 Msa0194520:intron 25.0%
!! CATTTTGTAATCTGATTCTA+TGG + chr2_1:10728286-10728305 Msa0194520:intron 25.0%
!! ATATCATTTGTTGGACTAAA+AGG - chr2_1:10728668-10728687 None:intergenic 25.0%
! TTACATATCAAAACACACAA+CGG - chr2_1:10728746-10728765 None:intergenic 25.0%
! CTTACTTAAACTAAAAGTTC+TGG + chr2_1:10728918-10728937 Msa0194520:intron 25.0%
!!! CTTTTAAGAGCATTTATCTA+GGG - chr2_1:10728959-10728978 None:intergenic 25.0%
!!! TCTTTTAAGAGCATTTATCT+AGG - chr2_1:10728960-10728979 None:intergenic 25.0%
! AAAAGATATAGATAAGCACA+TGG + chr2_1:10728974-10728993 Msa0194520:intron 25.0%
!! ATTTTTGTTGAAGTTCTTTG+TGG + chr2_1:10728997-10729016 Msa0194520:intron 25.0%
!!! GGTATTGAATTTTTCTAGTA+TGG - chr2_1:10729342-10729361 None:intergenic 25.0%
!!! TTTGATTTTTGGACAAGTTT+TGG - chr2_1:10729438-10729457 None:intergenic 25.0%
!!! GTTCTGCTAAATTTGATTTT+TGG - chr2_1:10729449-10729468 None:intergenic 25.0%
! AAATTTAGCAGAACAATACT+GGG + chr2_1:10729455-10729474 Msa0194520:intron 25.0%
! AAAAAGATAGTGCAATTAAC+TGG - chr2_1:10729782-10729801 None:intergenic 25.0%
! CTTATATATCTGATGTTTCA+CGG + chr2_1:10729925-10729944 Msa0194520:CDS 25.0%
! CTATTTGTTTCATCATTTAG+GGG + chr2_1:10730063-10730082 Msa0194520:intron 25.0%
! TATTTGTTTCATCATTTAGG+GGG + chr2_1:10730064-10730083 Msa0194520:intron 25.0%
!! TTTTCGAAATGACTGTAAAA+AGG - chr2_1:10730150-10730169 None:intergenic 25.0%
!!! GTTCTGTTGTCAATTTTTTT+TGG + chr2_1:10730224-10730243 Msa0194520:intron 25.0%
!!! CTATGTGTTATTTTGTTTAG+TGG + chr2_1:10730437-10730456 Msa0194520:intron 25.0%
! TGTATGAGAAAAACGAAATA+TGG - chr2_1:10730595-10730614 None:intergenic 25.0%
!! AAGTAACTTGACTTTTCTAT+CGG - chr2_1:10730767-10730786 None:intergenic 25.0%
! CATTTATCAATGAGAAAGTA+AGG - chr2_1:10730845-10730864 None:intergenic 25.0%
!! GTAATGGAATATAGTGAATT+TGG + chr2_1:10730917-10730936 Msa0194520:intron 25.0%
! TTGATAGAAAATATCTGCTA+TGG + chr2_1:10730981-10731000 Msa0194520:intron 25.0%
! GTCCTGTATATAAATATCAA+TGG + chr2_1:10731003-10731022 Msa0194520:intron 25.0%
!!! GTTATTTCTTCATAGATGAT+AGG - chr2_1:10731177-10731196 None:intergenic 25.0%
! AAAAATACATAACATACCAG+AGG - chr2_1:10731612-10731631 None:intergenic 25.0%
! TCACCTTACTATAAGTTTAT+GGG - chr2_1:10731716-10731735 None:intergenic 25.0%
!! ATGCACATTTTACAAAATCA+GGG - chr2_1:10731925-10731944 None:intergenic 25.0%
!! AATGCACATTTTACAAAATC+AGG - chr2_1:10731926-10731945 None:intergenic 25.0%
!!! ATTGTGTTGATTGACATTTA+TGG + chr2_1:10731951-10731970 Msa0194520:intron 25.0%
!!! TTGAAGTTGATAAAATTTGC+GGG + chr2_1:10732228-10732247 Msa0194520:intron 25.0%
! ATTACGTAATAGTAATGGTT+AGG - chr2_1:10732308-10732327 None:intergenic 25.0%
! CAAAGATTACGTAATAGTAA+TGG - chr2_1:10732313-10732332 None:intergenic 25.0%
! TATGGCTAAAGTACAAATAA+GGG - chr2_1:10732355-10732374 None:intergenic 25.0%
! ATTTATGCTCATGATGATTA+TGG - chr2_1:10732396-10732415 None:intergenic 25.0%
!! TGAGGAAATCTTGATTTTTA+TGG + chr2_1:10732719-10732738 Msa0194520:three_prime_UTR 25.0%
! TACATCTCTAATTAGGATAT+TGG - chr2_1:10732875-10732894 None:intergenic 25.0%
GAAAATGAGAAGAAAGAAGA+AGG - chr2_1:10727226-10727245 None:intergenic 30.0%
!! AAAGAGAGTACCTGTAATTA+GGG - chr2_1:10727467-10727486 None:intergenic 30.0%
TTGAAGCTTGATTTAGTGAT+TGG + chr2_1:10727765-10727784 Msa0194520:intron 30.0%
! TTTTATGAAAAGTTGCTCGT+GGG - chr2_1:10727828-10727847 None:intergenic 30.0%
! TTTTTATGAAAAGTTGCTCG+TGG - chr2_1:10727829-10727848 None:intergenic 30.0%
ATTTCATTTCAGATGTATGC+TGG + chr2_1:10728003-10728022 Msa0194520:intron 30.0%
!!! ATATTTTGATGCTATAGCCA+TGG - chr2_1:10728069-10728088 None:intergenic 30.0%
! TAATGTTGTCATTTCTGTGT+TGG + chr2_1:10728108-10728127 Msa0194520:intron 30.0%
!! TTCTGTGTTGGTTATAAAAC+TGG + chr2_1:10728120-10728139 Msa0194520:intron 30.0%
! TGTTGGTTATAAAACTGGTA+AGG + chr2_1:10728125-10728144 Msa0194520:intron 30.0%
! TGGCAACTAGAAATTTTAAG+GGG - chr2_1:10728260-10728279 None:intergenic 30.0%
CAGATTACAAAATGAACCAA+TGG - chr2_1:10728280-10728299 None:intergenic 30.0%
TGACATGATATTCAAGAACA+TGG + chr2_1:10728452-10728471 Msa0194520:intron 30.0%
AGACAAAAGGAAGAAAATCT+AGG - chr2_1:10728500-10728519 None:intergenic 30.0%
! GATTTTCTTCCTTTTGTCTA+CGG + chr2_1:10728501-10728520 Msa0194520:intron 30.0%
TCAGGTCAATTCAAATTTCA+AGG - chr2_1:10728533-10728552 None:intergenic 30.0%
TCTCAAAGACTGAAAATTTC+AGG - chr2_1:10728551-10728570 None:intergenic 30.0%
ATGTAGGTTTCGAAAATAGA+GGG - chr2_1:10728800-10728819 None:intergenic 30.0%
TATGTAGGTTTCGAAAATAG+AGG - chr2_1:10728801-10728820 None:intergenic 30.0%
! TCTGAGACTATTTGATAGTT+AGG - chr2_1:10728858-10728877 None:intergenic 30.0%
TCACTTACCAATCTGTTAAA+AGG + chr2_1:10729068-10729087 Msa0194520:intron 30.0%
!! TAAGGTACCTTTTAACAGAT+TGG - chr2_1:10729078-10729097 None:intergenic 30.0%
TAGAGCAACATTGATCAATA+AGG - chr2_1:10729096-10729115 None:intergenic 30.0%
TATAATTCTGTTGATATCCC+AGG + chr2_1:10729142-10729161 Msa0194520:intron 30.0%
AACTCAGATGCTTGTATATT+TGG + chr2_1:10729240-10729259 Msa0194520:intron 30.0%
GTGCTTACTGCTTTATATTT+GGG - chr2_1:10729369-10729388 None:intergenic 30.0%
TGTGCTTACTGCTTTATATT+TGG - chr2_1:10729370-10729389 None:intergenic 30.0%
!!! TTTTTGGACAAGTTTTGGTT+TGG - chr2_1:10729433-10729452 None:intergenic 30.0%
CAAATTTAGCAGAACAATAC+TGG + chr2_1:10729454-10729473 Msa0194520:intron 30.0%
ACACATGCTCAAAATATAAC+TGG - chr2_1:10729484-10729503 None:intergenic 30.0%
ATCATAATTCATGCTGAGAT+AGG - chr2_1:10729539-10729558 None:intergenic 30.0%
! CACCTTTTCTTTGATTGTAT+GGG + chr2_1:10729560-10729579 Msa0194520:intron 30.0%
!!! TGTTGCAAAGTTTTAAACCA+TGG - chr2_1:10729613-10729632 None:intergenic 30.0%
AGAAGAGAAGTTTCCTTATT+TGG + chr2_1:10729637-10729656 Msa0194520:CDS 30.0%
TTCAATCCTGATGCAAAAAA+TGG - chr2_1:10729746-10729765 None:intergenic 30.0%
ATAGTGCAATTAACTGGTAA+AGG - chr2_1:10729776-10729795 None:intergenic 30.0%
!!! TTACTGTTTTTTGTGGATGT+AGG + chr2_1:10729842-10729861 Msa0194520:intron 30.0%
!! ATCTGTTTGGGATTTCTTTT+TGG + chr2_1:10729885-10729904 Msa0194520:CDS 30.0%
!! TTCTTTTTGGTGAGAAAAGT+AGG + chr2_1:10729898-10729917 Msa0194520:CDS 30.0%
!! TCTTTTTGGTGAGAAAAGTA+GGG + chr2_1:10729899-10729918 Msa0194520:CDS 30.0%
TTTACAGTCATTTCGAAAAG+TGG + chr2_1:10730151-10730170 Msa0194520:intron 30.0%
ACAGTTGGATCTTCTAATAT+TGG + chr2_1:10730180-10730199 Msa0194520:CDS 30.0%
! TAGCACAAACCTTTGAAAAT+AGG + chr2_1:10730488-10730507 Msa0194520:intron 30.0%
!! TTTCGTTTTTCTCATACAAG+AGG + chr2_1:10730597-10730616 Msa0194520:intron 30.0%
TACTTGTTCAATAACATGAC+TGG + chr2_1:10730636-10730655 Msa0194520:intron 30.0%
! AGTAACTTGACTTTTCTATC+GGG - chr2_1:10730766-10730785 None:intergenic 30.0%
CCATTACGCATTTATGATAA+TGG - chr2_1:10730904-10730923 None:intergenic 30.0%
CCATTATCATAAATGCGTAA+TGG + chr2_1:10730901-10730920 Msa0194520:intron 30.0%
ATTTGGTCATAAGTGTGTAA+TGG + chr2_1:10730934-10730953 Msa0194520:intron 30.0%
! GTGTGTAATGGAATATAGAA+AGG + chr2_1:10730946-10730965 Msa0194520:intron 30.0%
GGAATACAAGATCATAAATG+AGG + chr2_1:10731024-10731043 Msa0194520:intron 30.0%
!!! AGAAGCTTGTTTTTGGTTTA+GGG - chr2_1:10731123-10731142 None:intergenic 30.0%
!!! TAGAAGCTTGTTTTTGGTTT+AGG - chr2_1:10731124-10731143 None:intergenic 30.0%
CAAAATTGAAAACAAACCTG+TGG - chr2_1:10731306-10731325 None:intergenic 30.0%
ATGAGTCATTCCAATCAATA+GGG - chr2_1:10731426-10731445 None:intergenic 30.0%
!! ACAATGAGTTTTTGAAAGAG+TGG + chr2_1:10731465-10731484 Msa0194520:CDS 30.0%
ATTTACAAATGGATACCTTC+TGG - chr2_1:10731492-10731511 None:intergenic 30.0%
TATTTATCATTGTACTCCTC+TGG + chr2_1:10731593-10731612 Msa0194520:intron 30.0%
CACCTTACTATAAGTTTATG+GGG - chr2_1:10731715-10731734 None:intergenic 30.0%
CTCACCTTACTATAAGTTTA+TGG - chr2_1:10731717-10731736 None:intergenic 30.0%
CATAAACTTATAGTAAGGTG+AGG + chr2_1:10731715-10731734 Msa0194520:intron 30.0%
! AAAAAATGATGATTTGGGTC+AGG - chr2_1:10731749-10731768 None:intergenic 30.0%
GTACATAGAGAAGTAGAATA+TGG + chr2_1:10731781-10731800 Msa0194520:intron 30.0%
TATCAAGAAAAAACGAGACA+TGG - chr2_1:10731841-10731860 None:intergenic 30.0%
AGAAAAAACATAAGACCAGA+GGG - chr2_1:10731866-10731885 None:intergenic 30.0%
AAGAAAAAACATAAGACCAG+AGG - chr2_1:10731867-10731886 None:intergenic 30.0%
TTGTGTAGTGATTGACATTT+AGG + chr2_1:10732045-10732064 Msa0194520:intron 30.0%
TGTGTAGTGATTGACATTTA+GGG + chr2_1:10732046-10732065 Msa0194520:intron 30.0%
!! TGAAGTTGATAAAATTTGCG+GGG + chr2_1:10732229-10732248 Msa0194520:intron 30.0%
TTAGGAACCACAAAAATACT+GGG - chr2_1:10732290-10732309 None:intergenic 30.0%
!!! AAATAAGGGTATGCTGTTTT+AGG - chr2_1:10732341-10732360 None:intergenic 30.0%
GTATGGCTAAAGTACAAATA+AGG - chr2_1:10732356-10732375 None:intergenic 30.0%
! TGTATTATTTTCCTCTTGCA+GGG + chr2_1:10732530-10732549 Msa0194520:intron 30.0%
! GGGCATCTTTGAAAATATTA+AGG - chr2_1:10732612-10732631 None:intergenic 30.0%
ACTTGTGATATTATAGTGTG+AGG + chr2_1:10732701-10732720 Msa0194520:three_prime_UTR 30.0%
AAAAGATTCTTAGGATACAC+TGG - chr2_1:10732829-10732848 None:intergenic 30.0%
! TATCCTAAGAATCTTTTGCA+GGG + chr2_1:10732832-10732851 Msa0194520:three_prime_UTR 30.0%
TCTCTAATTAGGATATTGGT+GGG - chr2_1:10732871-10732890 None:intergenic 30.0%
ATCTCTAATTAGGATATTGG+TGG - chr2_1:10732872-10732891 None:intergenic 30.0%
ATGAGAAGAAAGAAGAAGGA+AGG - chr2_1:10727222-10727241 None:intergenic 35.0%
TTGATGAGACACAGTACATT+GGG - chr2_1:10727384-10727403 None:intergenic 35.0%
ATTGATGAGACACAGTACAT+TGG - chr2_1:10727385-10727404 None:intergenic 35.0%
! CTGTAATTAGGGTTTTTCTC+CGG - chr2_1:10727456-10727475 None:intergenic 35.0%
!! GAAAGAGAGTACCTGTAATT+AGG - chr2_1:10727468-10727487 None:intergenic 35.0%
! TTGATGTGATGTTCGTTTTG+TGG + chr2_1:10727534-10727553 Msa0194520:intron 35.0%
! TGTTCGTTTTGTGGATTTGT+AGG + chr2_1:10727543-10727562 Msa0194520:intron 35.0%
!! TTCGATGGTTTGTTCATCAT+CGG + chr2_1:10727660-10727679 Msa0194520:CDS 35.0%
! TAACTCACAGAATCGATTCT+TGG - chr2_1:10727689-10727708 None:intergenic 35.0%
TCCAACAAGTCAAAAGATGA+AGG + chr2_1:10727914-10727933 Msa0194520:intron 35.0%
!!! TCCTTCATCTTTTGACTTGT+TGG - chr2_1:10727918-10727937 None:intergenic 35.0%
CAGGATGAAATCATAAGAGT+TGG + chr2_1:10727949-10727968 Msa0194520:intron 35.0%
!! GCAGAGCATCTGATTTTTAA+GGG + chr2_1:10727978-10727997 Msa0194520:intron 35.0%
TTTCAGATGTATGCTGGTAA+AGG + chr2_1:10728009-10728028 Msa0194520:intron 35.0%
TATGCTGGTAAAGGTTTCTA+GGG + chr2_1:10728018-10728037 Msa0194520:intron 35.0%
ATGCCATGAAGAGAAAGAAA+AGG + chr2_1:10728042-10728061 Msa0194520:intron 35.0%
TGCCATGAAGAGAAAGAAAA+GGG + chr2_1:10728043-10728062 Msa0194520:intron 35.0%
!! TTTGTTAATTAGTGGTGGAC+TGG - chr2_1:10728179-10728198 None:intergenic 35.0%
CCTAAAATGAATTTCTTCCC+AGG - chr2_1:10728383-10728402 None:intergenic 35.0%
! CCTGGGAAGAAATTCATTTT+AGG + chr2_1:10728380-10728399 Msa0194520:intron 35.0%
GTGGGATCAATATCATTTGT+TGG - chr2_1:10728677-10728696 None:intergenic 35.0%
GATACTGCACATAATATCCT+GGG - chr2_1:10729162-10729181 None:intergenic 35.0%
! ACTGCTTTATATTTGGGACT+TGG - chr2_1:10729363-10729382 None:intergenic 35.0%
!!! GGTTTGGCTTTTGTTTTTAC+TGG - chr2_1:10729417-10729436 None:intergenic 35.0%
! CATTGCAATCTATGGGTTAA+GGG - chr2_1:10729511-10729530 None:intergenic 35.0%
! ACATTGCAATCTATGGGTTA+AGG - chr2_1:10729512-10729531 None:intergenic 35.0%
! GCACCTTTTCTTTGATTGTA+TGG + chr2_1:10729559-10729578 Msa0194520:intron 35.0%
AGCCCATACAATCAAAGAAA+AGG - chr2_1:10729565-10729584 None:intergenic 35.0%
! ATTCAACTACTTGAGAGCAT+AGG - chr2_1:10729590-10729609 None:intergenic 35.0%
!! CGTTGTTTCTGAACCAAATA+AGG - chr2_1:10729653-10729672 None:intergenic 35.0%
!!! AATCAGCCATTTTTTGCATC+AGG + chr2_1:10729737-10729756 Msa0194520:CDS 35.0%
! TGCTTTACTCCTTTTATACG+AGG + chr2_1:10729816-10729835 Msa0194520:intron 35.0%
CAGTAAAGTCCTCGTATAAA+AGG - chr2_1:10729828-10729847 None:intergenic 35.0%
!!! GAGGACTTTACTGTTTTTTG+TGG + chr2_1:10729835-10729854 Msa0194520:intron 35.0%
! ATTTGAAATACCTTCGTGCT+TGG + chr2_1:10729975-10729994 Msa0194520:intron 35.0%
!! TTCTCAGCATGCTTTATTTC+TGG + chr2_1:10730290-10730309 Msa0194520:intron 35.0%
CTTAATGTCACTCTCTCTTA+AGG + chr2_1:10730337-10730356 Msa0194520:intron 35.0%
GTTGAATCAAATCTAGCTGT+AGG - chr2_1:10730418-10730437 None:intergenic 35.0%
AAGAGACACTATAGTCTATC+AGG - chr2_1:10730551-10730570 None:intergenic 35.0%
TTCAATAACATGACTGGAGA+AGG + chr2_1:10730642-10730661 Msa0194520:intron 35.0%
CACACTGAGTAATCATCTAA+TGG - chr2_1:10730668-10730687 None:intergenic 35.0%
! TAACTTGACTTTTCTATCGG+GGG - chr2_1:10730764-10730783 None:intergenic 35.0%
! GTAACTTGACTTTTCTATCG+GGG - chr2_1:10730765-10730784 None:intergenic 35.0%
!!! TTTTTTGTGTCACTACAGAC+TGG + chr2_1:10731255-10731274 Msa0194520:intron 35.0%
AAACCTGTGGAAAACAAAGA+TGG - chr2_1:10731293-10731312 None:intergenic 35.0%
TGAATGTTACACTATCTCAC+TGG + chr2_1:10731331-10731350 Msa0194520:intron 35.0%
AGACTCTTGAAATTGTGAAG+AGG + chr2_1:10731384-10731403 Msa0194520:intron 35.0%
CATGAGTCATTCCAATCAAT+AGG - chr2_1:10731427-10731446 None:intergenic 35.0%
TCAAAAACTCATTGTCCTTG+TGG - chr2_1:10731460-10731479 None:intergenic 35.0%
CATGCTACTATCAGATTGTT+GGG - chr2_1:10731558-10731577 None:intergenic 35.0%
TCATGCTACTATCAGATTGT+TGG - chr2_1:10731559-10731578 None:intergenic 35.0%
ACTCTTCTATGAATGTGCTT+AGG + chr2_1:10731648-10731667 Msa0194520:intron 35.0%
CTCTTCTATGAATGTGCTTA+GGG + chr2_1:10731649-10731668 Msa0194520:intron 35.0%
GTCCCCATAAACTTATAGTA+AGG + chr2_1:10731710-10731729 Msa0194520:intron 35.0%
!!! TTTTTTCTTGATACTCCCTC+TGG + chr2_1:10731848-10731867 Msa0194520:intron 35.0%
ATTTATGGTGTGTTTGCATG+TGG + chr2_1:10731966-10731985 Msa0194520:intron 35.0%
TGTGGAGATAAATAGTGAGT+AGG + chr2_1:10731984-10732003 Msa0194520:intron 35.0%
ATAGTGAGTAGGTATGAAGT+TGG + chr2_1:10731995-10732014 Msa0194520:intron 35.0%
TAGTGAGTAGGTATGAAGTT+GGG + chr2_1:10731996-10732015 Msa0194520:intron 35.0%
! ATTTAGGGTGTGTTTGTATG+TGG + chr2_1:10732061-10732080 Msa0194520:intron 35.0%
TGTGGAGATAAATAGTGAGT+AGG + chr2_1:10731984-10732003 Msa0194520:intron 35.0%
ATAGTGAGTAGGTATGAAGT+TGG + chr2_1:10731995-10732014 Msa0194520:intron 35.0%
TAGTGAGTAGGTATGAAGTT+GGG + chr2_1:10731996-10732015 Msa0194520:intron 35.0%
GTTAGGAACCACAAAAATAC+TGG - chr2_1:10732291-10732310 None:intergenic 35.0%
TATGGCCAAGGTACAAATAA+GGG - chr2_1:10732378-10732397 None:intergenic 35.0%
TTATGGCCAAGGTACAAATA+AGG - chr2_1:10732379-10732398 None:intergenic 35.0%
ATCACTACTGATCATGAGAA+GGG - chr2_1:10732470-10732489 None:intergenic 35.0%
! CTGTATTATTTTCCTCTTGC+AGG + chr2_1:10732529-10732548 Msa0194520:intron 35.0%
!! CTAGGTTTGCTTTAGAAACT+GGG - chr2_1:10732632-10732651 None:intergenic 35.0%
! GTATCCTAAGAATCTTTTGC+AGG + chr2_1:10732831-10732850 Msa0194520:three_prime_UTR 35.0%
TCTAATTAGGATATTGGTGG+GGG - chr2_1:10732869-10732888 None:intergenic 35.0%
CTCTAATTAGGATATTGGTG+GGG - chr2_1:10732870-10732889 None:intergenic 35.0%
AGAAGAAAGAAGAAGGAAGG+TGG - chr2_1:10727219-10727238 None:intergenic 40.0%
TCTTTCTCTCTCATCTCTTC+TGG + chr2_1:10727256-10727275 Msa0194520:five_prime_UTR 40.0%
TCTCATCTCTTCTGGATCTA+CGG + chr2_1:10727264-10727283 Msa0194520:five_prime_UTR 40.0%
! AATTAGGGTTTTTCTCCGGT+GGG - chr2_1:10727452-10727471 None:intergenic 40.0%
! TAATTAGGGTTTTTCTCCGG+TGG - chr2_1:10727453-10727472 None:intergenic 40.0%
CGGAGAAAAACCCTAATTAC+AGG + chr2_1:10727454-10727473 Msa0194520:CDS 40.0%
ATTGATTATTGTGGAAGCGG+TGG + chr2_1:10727584-10727603 Msa0194520:CDS 40.0%
TTGATGTTGGCAAGACGTTT+AGG + chr2_1:10727627-10727646 Msa0194520:CDS 40.0%
TGATGTTGGCAAGACGTTTA+GGG + chr2_1:10727628-10727647 Msa0194520:CDS 40.0%
! ATGAAGGATTATTAACGGGC+AGG + chr2_1:10727930-10727949 Msa0194520:intron 40.0%
!! CGCAGAGCATCTGATTTTTA+AGG + chr2_1:10727977-10727996 Msa0194520:intron 40.0%
GTATGCTGGTAAAGGTTTCT+AGG + chr2_1:10728017-10728036 Msa0194520:intron 40.0%
!! AATTTTAAGGGGTTCTGCTC+TGG - chr2_1:10728249-10728268 None:intergenic 40.0%
AGGAACATACCGTAGACAAA+AGG - chr2_1:10728513-10728532 None:intergenic 40.0%
!! TATCCATTGAATGCTGACTC+AGG - chr2_1:10728709-10728728 None:intergenic 40.0%
TGAGTCAGCATTCAATGGAT+AGG + chr2_1:10728708-10728727 Msa0194520:CDS 40.0%
CGATACTGCACATAATATCC+TGG - chr2_1:10729163-10729182 None:intergenic 40.0%
AGCATCTGAGTTCAGTGATT+GGG - chr2_1:10729232-10729251 None:intergenic 40.0%
AAGCATCTGAGTTCAGTGAT+TGG - chr2_1:10729233-10729252 None:intergenic 40.0%
GGAGTCACATTGCAATCTAT+GGG - chr2_1:10729518-10729537 None:intergenic 40.0%
AGGAGTCACATTGCAATCTA+TGG - chr2_1:10729519-10729538 None:intergenic 40.0%
CTCTCAAGTAGTTGAATCCA+TGG + chr2_1:10729593-10729612 Msa0194520:intron 40.0%
! TTTGGTTCAGAAACAACGCA+AGG + chr2_1:10729655-10729674 Msa0194520:CDS 40.0%
AGGAAGGACAAGAAATACGA+AGG + chr2_1:10729675-10729694 Msa0194520:CDS 40.0%
GGAAGGACAAGAAATACGAA+GGG + chr2_1:10729676-10729695 Msa0194520:CDS 40.0%
! GTCATCAGTGATAATGTTCC+AGG - chr2_1:10729714-10729733 None:intergenic 40.0%
TTGTGGATGTAGGTAATGCA+TGG + chr2_1:10729852-10729871 Msa0194520:intron 40.0%
TGGAGAGGATTACATCTGTT+TGG + chr2_1:10729872-10729891 Msa0194520:CDS 40.0%
GGAGAGGATTACATCTGTTT+GGG + chr2_1:10729873-10729892 Msa0194520:CDS 40.0%
! TTTTGGTGAGAAAAGTAGGG+TGG + chr2_1:10729902-10729921 Msa0194520:CDS 40.0%
ATACCATATTCTGTACTCGC+GGG - chr2_1:10729954-10729973 None:intergenic 40.0%
CATACCATATTCTGTACTCG+CGG - chr2_1:10729955-10729974 None:intergenic 40.0%
ATACATATGTCCAAGCACGA+AGG - chr2_1:10729988-10730007 None:intergenic 40.0%
TCAGTTCCATCTCCCAAAAT+TGG + chr2_1:10730012-10730031 Msa0194520:intron 40.0%
! CACACTCGTAGTCCAATTTT+GGG - chr2_1:10730027-10730046 None:intergenic 40.0%
AATGTCACTCTCTCTTAAGG+AGG + chr2_1:10730340-10730359 Msa0194520:intron 40.0%
ATGTCACTCTCTCTTAAGGA+GGG + chr2_1:10730341-10730360 Msa0194520:intron 40.0%
TAAACTGCTTCTTACTTCCC+TGG + chr2_1:10730387-10730406 Msa0194520:intron 40.0%
! AACTTGACTTTTCTATCGGG+GGG - chr2_1:10730763-10730782 None:intergenic 40.0%
TAAATGAGGAGCAAGAGACA+AGG + chr2_1:10731038-10731057 Msa0194520:intron 40.0%
AAGAGACAAGGATATTGCAG+AGG + chr2_1:10731050-10731069 Msa0194520:intron 40.0%
!!! TGTCCATCTTTGTTTTCCAC+AGG + chr2_1:10731287-10731306 Msa0194520:CDS 40.0%
ATGTTACACTATCTCACTGG+TGG + chr2_1:10731334-10731353 Msa0194520:intron 40.0%
! CCAATCAATAGGGTTTGCTT+TGG - chr2_1:10731416-10731435 None:intergenic 40.0%
CCAAAGCAAACCCTATTGAT+TGG + chr2_1:10731413-10731432 Msa0194520:CDS 40.0%
TCATGAGTTTGATCACCACA+AGG + chr2_1:10731442-10731461 Msa0194520:CDS 40.0%
!! TTTTGAAAGAGTGGTCCAGA+AGG + chr2_1:10731474-10731493 Msa0194520:CDS 40.0%
TCTATGAATGTGCTTAGGGA+AGG + chr2_1:10731653-10731672 Msa0194520:intron 40.0%
! AATGATGATTTGGGTCAGGA+GGG - chr2_1:10731745-10731764 None:intergenic 40.0%
! AAATGATGATTTGGGTCAGG+AGG - chr2_1:10731746-10731765 None:intergenic 40.0%
!! TTGGTTAGTGGAAAAGCACT+TGG + chr2_1:10732181-10732200 Msa0194520:intron 40.0%
!! TGGTTAGTGGAAAAGCACTT+GGG + chr2_1:10732182-10732201 Msa0194520:intron 40.0%
!! AGTTGATAAAATTTGCGGGG+TGG + chr2_1:10732232-10732251 Msa0194520:intron 40.0%
AAGTGACACTACACTTTCAC+TGG + chr2_1:10732264-10732283 Msa0194520:intron 40.0%
!!! TAAGGGTATGCTGTTTTAGG+AGG - chr2_1:10732338-10732357 None:intergenic 40.0%
CCAAGGTACAAATAAGGGTA+TGG - chr2_1:10732373-10732392 None:intergenic 40.0%
! CCATACCCTTATTTGTACCT+TGG + chr2_1:10732370-10732389 Msa0194520:intron 40.0%
TCACTACTGATCATGAGAAG+GGG - chr2_1:10732469-10732488 None:intergenic 40.0%
GATCACTACTGATCATGAGA+AGG - chr2_1:10732471-10732490 None:intergenic 40.0%
!! CCTAGGTTTGCTTTAGAAAC+TGG - chr2_1:10732633-10732652 None:intergenic 40.0%
!! CCAGTTTCTAAAGCAAACCT+AGG + chr2_1:10732630-10732649 Msa0194520:three_prime_UTR 40.0%
TGACCCTGCAAAAGATTCTT+AGG - chr2_1:10732838-10732857 None:intergenic 40.0%
CTAATTAGGATATTGGTGGG+GGG - chr2_1:10732868-10732887 None:intergenic 40.0%
!! AAGATCAACGCCGATTCAGA+GGG - chr2_1:10727333-10727352 None:intergenic 45.0%
!! AAAGATCAACGCCGATTCAG+AGG - chr2_1:10727334-10727353 None:intergenic 45.0%
!! GAATCGGCGTTGATCTTTCT+CGG + chr2_1:10727336-10727355 Msa0194520:CDS 45.0%
AAAATCAGATGCTCTGCGAC+AGG - chr2_1:10727975-10727994 None:intergenic 45.0%
! GGCCCTTTTCTTTCTCTTCA+TGG - chr2_1:10728048-10728067 None:intergenic 45.0%
GAAGAGAAAGAAAAGGGCCA+TGG + chr2_1:10728049-10728068 Msa0194520:intron 45.0%
!! GTTAATTAGTGGTGGACTGG+TGG - chr2_1:10728176-10728195 None:intergenic 45.0%
TGAATTTCTTCCCAGGAGCT+GGG - chr2_1:10728376-10728395 None:intergenic 45.0%
ATGAATTTCTTCCCAGGAGC+TGG - chr2_1:10728377-10728396 None:intergenic 45.0%
CTCGTACATCATCCAATCCA+AGG - chr2_1:10728637-10728656 None:intergenic 45.0%
!! AATGCTGACTCAGGTAGATG+GGG - chr2_1:10728700-10728719 None:intergenic 45.0%
!! GAATGCTGACTCAGGTAGAT+GGG - chr2_1:10728701-10728720 None:intergenic 45.0%
!! TGAATGCTGACTCAGGTAGA+TGG - chr2_1:10728702-10728721 None:intergenic 45.0%
CTACCTGAGTCAGCATTCAA+TGG + chr2_1:10728703-10728722 Msa0194520:CDS 45.0%
AAACACACAACGGTCACTAG+AGG - chr2_1:10728736-10728755 None:intergenic 45.0%
! CAGTGATTGGGAAGTACACA+CGG - chr2_1:10729220-10729239 None:intergenic 45.0%
GTTCAGAAACAACGCAAGGA+AGG + chr2_1:10729659-10729678 Msa0194520:CDS 45.0%
AATACGAAGGGTTGCTCAGA+TGG + chr2_1:10729688-10729707 Msa0194520:CDS 45.0%
GATGTAGGTAATGCATGGAG+AGG + chr2_1:10729857-10729876 Msa0194520:intron 45.0%
ATTCCCGCGAGTACAGAATA+TGG + chr2_1:10729948-10729967 Msa0194520:CDS 45.0%
!! CGTAGTCCAATTTTGGGAGA+TGG - chr2_1:10730021-10730040 None:intergenic 45.0%
! GCACACTCGTAGTCCAATTT+TGG - chr2_1:10730028-10730047 None:intergenic 45.0%
GTCATTTCGAAAAGTGGAGC+TGG + chr2_1:10730157-10730176 Msa0194520:intron 45.0%
TGTCACTCTCTCTTAAGGAG+GGG + chr2_1:10730342-10730361 Msa0194520:intron 45.0%
TCTAGCTGTAGGAAACACCA+GGG - chr2_1:10730407-10730426 None:intergenic 45.0%
ATCTAGCTGTAGGAAACACC+AGG - chr2_1:10730408-10730427 None:intergenic 45.0%
! ACTTGACTTTTCTATCGGGG+GGG - chr2_1:10730762-10730781 None:intergenic 45.0%
TGTGCTTAGGGAAGGAATTC+CGG + chr2_1:10731661-10731680 Msa0194520:intron 45.0%
GGATCCCTCATTCTAATCAG+CGG + chr2_1:10731802-10731821 Msa0194520:intron 45.0%
! CATGCCGCTGATTAGAATGA+GGG - chr2_1:10731809-10731828 None:intergenic 45.0%
GGGTGAGTAGAAAACTGAGT+AGG + chr2_1:10732111-10732130 Msa0194520:intron 45.0%
!! TCACTGGCCCAGTATTTTTG+TGG + chr2_1:10732280-10732299 Msa0194520:intron 45.0%
GCTCATGATGATTATGGCCA+AGG - chr2_1:10732390-10732409 None:intergenic 45.0%
!! CAGCAAAACTGTTGGTTCCT+AGG - chr2_1:10732650-10732669 None:intergenic 45.0%
! CTAGGAACCAACAGTTTTGC+TGG + chr2_1:10732648-10732667 Msa0194520:three_prime_UTR 45.0%
! GAACCAACAGTTTTGCTGGA+AGG + chr2_1:10732652-10732671 Msa0194520:three_prime_UTR 45.0%
!! TAAAAATATACATTATTATT+AGG + chr2_1:10727873-10727892 Msa0194520:intron 5.0%
! GCGTTGATCTTTCTCGGAAC+AGG + chr2_1:10727342-10727361 Msa0194520:CDS 50.0%
CGGAACAGGCTGTTCAAGTA+TGG + chr2_1:10727356-10727375 Msa0194520:CDS 50.0%
ACGGAACAAGGAGGATCAGA+GGG - chr2_1:10727408-10727427 None:intergenic 50.0%
AACGGAACAAGGAGGATCAG+AGG - chr2_1:10727409-10727428 None:intergenic 50.0%
CGACAATGACTGAGCGCAAA+CGG - chr2_1:10727427-10727446 None:intergenic 50.0%
TCAGTCATTGTCGATCCCAC+CGG + chr2_1:10727434-10727453 Msa0194520:CDS 50.0%
TTAGGGAGACTGTGCTTCGA+TGG + chr2_1:10727645-10727664 Msa0194520:CDS 50.0%
GAACATGCTGATGCAGTCCT+TGG + chr2_1:10728617-10728636 Msa0194520:CDS 50.0%
TGCTGATGCAGTCCTTGGAT+TGG + chr2_1:10728622-10728641 Msa0194520:CDS 50.0%
!! ATGCTGACTCAGGTAGATGG+GGG - chr2_1:10728699-10728718 None:intergenic 50.0%
GAAAAGTGGAGCTGGACAGT+TGG + chr2_1:10730165-10730184 Msa0194520:CDS 50.0%
TGCAGAGGACTCTAACCTTC+TGG + chr2_1:10731065-10731084 Msa0194520:intron 50.0%
!! GGACTCTAACCTTCTGGTTC+CGG + chr2_1:10731071-10731090 Msa0194520:intron 50.0%
CCATCATGAGAAAGCTGCAC+CGG - chr2_1:10731683-10731702 None:intergenic 50.0%
! GCATGCCGCTGATTAGAATG+AGG - chr2_1:10731810-10731829 None:intergenic 50.0%
CTACTGATCATGAGAAGGGG+AGG - chr2_1:10732466-10732485 None:intergenic 50.0%
CACATGCTTTACCCTGCAAG+AGG - chr2_1:10732544-10732563 None:intergenic 50.0%
! CCAACAGTTTTGCTGGAAGG+CGG + chr2_1:10732655-10732674 Msa0194520:three_prime_UTR 50.0%
CGGAACTCCTCCCTCTGAAT+CGG + chr2_1:10727320-10727339 Msa0194520:CDS 55.0%
!! ATCAACGCCGATTCAGAGGG+AGG - chr2_1:10727330-10727349 None:intergenic 55.0%
TGAGCGCAAACGGAACAAGG+AGG - chr2_1:10727417-10727436 None:intergenic 55.0%
GACTGAGCGCAAACGGAACA+AGG - chr2_1:10727420-10727439 None:intergenic 55.0%
GGCGCTGTTCTGTTCTGTAC+AGG + chr2_1:10728307-10728326 Msa0194520:intron 55.0%
TCTTACATCCTCCCAGCTCC+TGG + chr2_1:10728362-10728381 Msa0194520:intron 55.0%
CTTACATCCTCCCAGCTCCT+GGG + chr2_1:10728363-10728382 Msa0194520:intron 55.0%
ATTTCTTCCCAGGAGCTGGG+AGG - chr2_1:10728373-10728392 None:intergenic 55.0%
TGACTCAGGTAGATGGGGGT+GGG - chr2_1:10728695-10728714 None:intergenic 55.0%
CTCGAACATCCGGAACCAGA+AGG - chr2_1:10731083-10731102 None:intergenic 55.0%
!! CTTCTGGTTCCGGATGTTCG+AGG + chr2_1:10731081-10731100 Msa0194520:intron 55.0%
CCGGTGCAGCTTTCTCATGA+TGG + chr2_1:10731680-10731699 Msa0194520:intron 55.0%
CCGCCTTCCAGCAAAACTGT+TGG - chr2_1:10732658-10732677 None:intergenic 55.0%
GACGCCATGGCCACATCCAA+CGG + chr2_1:10727288-10727307 Msa0194520:exon 60.0%
!! ACATCCAACGGCACCGACGA+CGG + chr2_1:10727300-10727319 Msa0194520:CDS 60.0%
AGAGGGAGGAGTTCCGTCGT+CGG - chr2_1:10727316-10727335 None:intergenic 60.0%
CGTGGGACTCGCGTGTCAAA+AGG - chr2_1:10727811-10727830 None:intergenic 60.0%
CTGACTCAGGTAGATGGGGG+TGG - chr2_1:10728696-10728715 None:intergenic 60.0%
! GGGAAGTACACACGGCACAG+TGG - chr2_1:10729212-10729231 None:intergenic 60.0%
GAAGGGTTGCTCAGATGGCC+TGG + chr2_1:10729693-10729712 Msa0194520:CDS 60.0%
TCCGGATGTTCGAGGAACGC+AGG + chr2_1:10731089-10731108 Msa0194520:intron 60.0%
GCCTGCGTTCCTCGAACATC+CGG - chr2_1:10731093-10731112 None:intergenic 60.0%
CTGGATCTACGGCGACGCCA+TGG + chr2_1:10727275-10727294 Msa0194520:exon 65.0%
!! GGTGCCGTTGGATGTGGCCA+TGG - chr2_1:10727295-10727314 None:intergenic 65.0%
!! GTCGTCGGTGCCGTTGGATG+TGG - chr2_1:10727301-10727320 None:intergenic 65.0%
!! AGTTCCGTCGTCGGTGCCGT+TGG - chr2_1:10727307-10727326 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 10727170 10733012 10727170 ID=Msa0194520;Name=Msa0194520
chr2_1 mRNA 10727170 10733012 10727170 ID=Msa0194520-mRNA-1;Parent=Msa0194520;Name=Msa0194520-mRNA-1;_AED=0.25;_eAED=0.25;_QI=124|0.87|1|1|0.87|0.88|9|425|313
chr2_1 exon 10727170 10727475 10727170 ID=Msa0194520-mRNA-1:exon:4810;Parent=Msa0194520-mRNA-1
chr2_1 exon 10727565 10727700 10727565 ID=Msa0194520-mRNA-1:exon:4811;Parent=Msa0194520-mRNA-1
chr2_1 exon 10728602 10728729 10728602 ID=Msa0194520-mRNA-1:exon:4812;Parent=Msa0194520-mRNA-1
chr2_1 exon 10729634 10729781 10729634 ID=Msa0194520-mRNA-1:exon:4813;Parent=Msa0194520-mRNA-1
chr2_1 exon 10729864 10729969 10729864 ID=Msa0194520-mRNA-1:exon:4814;Parent=Msa0194520-mRNA-1
chr2_1 exon 10730158 10730216 10730158 ID=Msa0194520-mRNA-1:exon:4815;Parent=Msa0194520-mRNA-1
chr2_1 exon 10731273 10731308 10731273 ID=Msa0194520-mRNA-1:exon:4816;Parent=Msa0194520-mRNA-1
chr2_1 exon 10731386 10731495 10731386 ID=Msa0194520-mRNA-1:exon:4817;Parent=Msa0194520-mRNA-1
chr2_1 exon 10732551 10733012 10732551 ID=Msa0194520-mRNA-1:exon:4818;Parent=Msa0194520-mRNA-1
chr2_1 five_prime_UTR 10727170 10727293 10727170 ID=Msa0194520-mRNA-1:five_prime_utr;Parent=Msa0194520-mRNA-1
chr2_1 CDS 10727294 10727475 10727294 ID=Msa0194520-mRNA-1:cds;Parent=Msa0194520-mRNA-1
chr2_1 CDS 10727565 10727700 10727565 ID=Msa0194520-mRNA-1:cds;Parent=Msa0194520-mRNA-1
chr2_1 CDS 10728602 10728729 10728602 ID=Msa0194520-mRNA-1:cds;Parent=Msa0194520-mRNA-1
chr2_1 CDS 10729634 10729781 10729634 ID=Msa0194520-mRNA-1:cds;Parent=Msa0194520-mRNA-1
chr2_1 CDS 10729864 10729969 10729864 ID=Msa0194520-mRNA-1:cds;Parent=Msa0194520-mRNA-1
chr2_1 CDS 10730158 10730216 10730158 ID=Msa0194520-mRNA-1:cds;Parent=Msa0194520-mRNA-1
chr2_1 CDS 10731273 10731308 10731273 ID=Msa0194520-mRNA-1:cds;Parent=Msa0194520-mRNA-1
chr2_1 CDS 10731386 10731495 10731386 ID=Msa0194520-mRNA-1:cds;Parent=Msa0194520-mRNA-1
chr2_1 CDS 10732551 10732587 10732551 ID=Msa0194520-mRNA-1:cds;Parent=Msa0194520-mRNA-1
chr2_1 three_prime_UTR 10732588 10733012 10732588 ID=Msa0194520-mRNA-1:three_prime_utr;Parent=Msa0194520-mRNA-1
Gene Sequence

>Msa0194520

ATGGCCACATCCAACGGCACCGACGACGGAACTCCTCCCTCTGAATCGGCGTTGATCTTTCTCGGAACAGGCTGTTCAAGTATGGTTCCCAATGTACTGTGTCTCATCAATCCCTCTGATCCTCCTTGTTCCGTTTGCGCTCAGTCATTGTCGATCCCACCGGAGAAAAACCCTAATTACAGGTGTAATACTTCGATGTTAATTGATTATTGTGGAAGCGGTGGTAATCATAATTATATATTGATTGATGTTGGCAAGACGTTTAGGGAGACTGTGCTTCGATGGTTTGTTCATCATCGGATTCCAAGAATCGATTCTATTATTTTGACTCATGAACATGCTGATGCAGTCCTTGGATTGGATGATGTACGAGCTGTGCAGCCTTTTAGTCCAACAAATGATATTGATCCCACCCCCATCTACCTGAGTCAGCATTCAATGGATAGCATAGAAGAGAAGTTTCCTTATTTGGTTCAGAAACAACGCAAGGAAGGACAAGAAATACGAAGGGTTGCTCAGATGGCCTGGAACATTATCACTGATGACTGCAATCAGCCATTTTTTGCATCAGGATTGAAATTCACTCCTTTACCAGTAATGCATGGAGAGGATTACATCTGTTTGGGATTTCTTTTTGGTGAGAAAAGTAGGGTGGCTTATATATCTGATGTTTCACGGATTCCCGCGAGTACAGAATATGTCATTTCGAAAAGTGGAGCTGGACAGTTGGATCTTCTAATATTGGATTCATTATATAGGACTGGATCGCATAATGTCCATCTTTGTTTTCCACAGACTCTTGAAATTGTGAAGAGGTTGTGTCCAAAGCAAACCCTATTGATTGGAATGACTCATGAGTTTGATCACCACAAGGACAATGAGTTTTTGAAAGAGTGGTCCAGAAGGGTAAAGCATGTGACAATCTATACCATATACAGTTGA

Protein sequence

>Msa0194520

MATSNGTDDGTPPSESALIFLGTGCSSMVPNVLCLINPSDPPCSVCAQSLSIPPEKNPNYRCNTSMLIDYCGSGGNHNYILIDVGKTFRETVLRWFVHHRIPRIDSIILTHEHADAVLGLDDVRAVQPFSPTNDIDPTPIYLSQHSMDSIEEKFPYLVQKQRKEGQEIRRVAQMAWNIITDDCNQPFFASGLKFTPLPVMHGEDYICLGFLFGEKSRVAYISDVSRIPASTEYVISKSGAGQLDLLILDSLYRTGSHNVHLCFPQTLEIVKRLCPKQTLLIGMTHEFDHHKDNEFLKEWSRRVKHVTIYTIYS*