Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0060600 | Msa0189350 | 0.801148 | 1.032393e-48 | -8.615850e-47 |
| Msa0105340 | Msa0189350 | 0.811777 | 5.908670e-51 | -8.615850e-47 |
| Msa0189350 | Msa0903730 | 0.800697 | 1.276084e-48 | -8.615850e-47 |
| Msa0189350 | Msa1329990 | 0.812593 | 3.921585e-51 | -8.615850e-47 |
| Msa0189350 | Msa1419010 | 0.808695 | 2.730041e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 15 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATTCCATTCTAAGTATC+TGG | 0.247640 | 2_1:-4763624 | None:intergenic |
| TATGTAATTTAAAATAAATT+AGG | 0.313236 | 2_1:+4763869 | Msa0189350:three_prime_UTR |
| ACACTTAATTCTGGCGAGTT+AGG | 0.330208 | 2_1:+4763662 | Msa0189350:CDS |
| TAGTACTTGTAAGTGTTGTT+AGG | 0.376359 | 2_1:+4763788 | Msa0189350:three_prime_UTR |
| TGGATGGATACACTTAATTC+TGG | 0.408249 | 2_1:+4763653 | Msa0189350:CDS |
| ATTAATTTAATTGATACAAA+TGG | 0.438485 | 2_1:-4763977 | None:intergenic |
| GTACTTGTAAGCACTGATAT+AGG | 0.448750 | 2_1:+4763747 | Msa0189350:three_prime_UTR |
| GTAATTTAACAATGTCTTGA+AGG | 0.457400 | 2_1:-4763955 | None:intergenic |
| TTGTTACCAGATACTTAGAA+TGG | 0.491496 | 2_1:+4763618 | Msa0189350:CDS |
| ATGGAATGTGAGAAGGTGGA+TGG | 0.536531 | 2_1:+4763637 | Msa0189350:CDS |
| TAATTTAACAATGTCTTGAA+GGG | 0.548774 | 2_1:-4763954 | None:intergenic |
| TAGAATGGAATGTGAGAAGG+TGG | 0.592204 | 2_1:+4763633 | Msa0189350:CDS |
| ACTTAGAATGGAATGTGAGA+AGG | 0.609504 | 2_1:+4763630 | Msa0189350:CDS |
| TAACACCGGAAATCTTCAGA+TGG | 0.624072 | 2_1:-4763010 | None:intergenic |
| AATCAATTGAAGTTTAACAC+CGG | 0.629175 | 2_1:-4763024 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAAAAAAATTAAAAAA+AGG | + | chr2_1:4761361-4761380 | Msa0189350:intron | 0.0% |
| !!! | AATTTATTTATTTTCAAGTT+GGG | + | chr2_1:4761612-4761631 | Msa0189350:intron | 10.0% |
| !! | ATACAAAAAAAACAAAAAAA+AGG | - | chr2_1:4761912-4761931 | None:intergenic | 10.0% |
| !! | ATTAATTTAATTGATACAAA+TGG | - | chr2_1:4763980-4763999 | None:intergenic | 10.0% |
| !!! | CAATTTATTTATTTTCAAGT+TGG | + | chr2_1:4761611-4761630 | Msa0189350:intron | 15.0% |
| !! | AAAAAAAACAAAAAAAAGGA+TGG | - | chr2_1:4761908-4761927 | None:intergenic | 15.0% |
| !!! | CTTTAGTCTTTTTTTTTTAA+AGG | - | chr2_1:4762202-4762221 | None:intergenic | 15.0% |
| !!! | TAAAGAATCTGAAATATATA+TGG | + | chr2_1:4763571-4763590 | Msa0189350:intron | 15.0% |
| !! | ACTAAAGAAAAACTGAATAT+TGG | + | chr2_1:4762215-4762234 | Msa0189350:intron | 20.0% |
| !! | CTAAAGAAAAACTGAATATT+GGG | + | chr2_1:4762216-4762235 | Msa0189350:intron | 20.0% |
| !!! | CTTGATATTTATTTTCTGTT+GGG | - | chr2_1:4762551-4762570 | None:intergenic | 20.0% |
| !!! | TCTTGATATTTATTTTCTGT+TGG | - | chr2_1:4762552-4762571 | None:intergenic | 20.0% |
| !!! | TTTATTTATTTCTTCCACAA+AGG | + | chr2_1:4762581-4762600 | Msa0189350:intron | 20.0% |
| !!! | TTATTTATTTCTTCCACAAA+GGG | + | chr2_1:4762582-4762601 | Msa0189350:intron | 20.0% |
| !!! | AATTTATTTTGTCAAACTCT+AGG | - | chr2_1:4762850-4762869 | None:intergenic | 20.0% |
| !!! | TCTTTAGAATATAAACTCAA+GGG | + | chr2_1:4762877-4762896 | Msa0189350:intron | 20.0% |
| !! | ACCATTCATTTGTAATTAAT+TGG | + | chr2_1:4762955-4762974 | Msa0189350:intron | 20.0% |
| !! | ACCAATTAATTACAAATGAA+TGG | - | chr2_1:4762959-4762978 | None:intergenic | 20.0% |
| !! | AACTAATATCTCTAATTGTT+TGG | - | chr2_1:4763334-4763353 | None:intergenic | 20.0% |
| !! | TAAAGCAAAAAACACAAATT+GGG | - | chr2_1:4763702-4763721 | None:intergenic | 20.0% |
| !! | ATAAAGCAAAAAACACAAAT+TGG | - | chr2_1:4763703-4763722 | None:intergenic | 20.0% |
| !! | TAATTTAACAATGTCTTGAA+GGG | - | chr2_1:4763957-4763976 | None:intergenic | 20.0% |
| ! | GAAAAAGAGATATATGTCAA+AGG | - | chr2_1:4761309-4761328 | None:intergenic | 25.0% |
| !!! | TGACATATATCTCTTTTTCA+TGG | + | chr2_1:4761310-4761329 | Msa0189350:intron | 25.0% |
| !!! | GACATATATCTCTTTTTCAT+GGG | + | chr2_1:4761311-4761330 | Msa0189350:intron | 25.0% |
| !!! | TCTTTCATTATTTTAACCAG+TGG | + | chr2_1:4761937-4761956 | Msa0189350:intron | 25.0% |
| ! | TAATTATATGTGTCTTTAGC+AGG | + | chr2_1:4761961-4761980 | Msa0189350:intron | 25.0% |
| ! | AAAAACTAAGACATCCAATT+TGG | - | chr2_1:4762163-4762182 | None:intergenic | 25.0% |
| !!! | ATATTTATTTTCTGTTGGGA+AGG | - | chr2_1:4762547-4762566 | None:intergenic | 25.0% |
| !! | TCTAAAATAAAATCCCTTTG+TGG | - | chr2_1:4762598-4762617 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATATTAGTGAC+CGG | + | chr2_1:4762755-4762774 | Msa0189350:intron | 25.0% |
| !!! | TCAAGACATTTTTTAGGTTT+GGG | - | chr2_1:4762792-4762811 | None:intergenic | 25.0% |
| !!! | CTCTTTAGAATATAAACTCA+AGG | + | chr2_1:4762876-4762895 | Msa0189350:intron | 25.0% |
| ! | AATCAATTGAAGTTTAACAC+CGG | - | chr2_1:4763027-4763046 | None:intergenic | 25.0% |
| !!! | GAAGGTTTTGTTAATAGAAA+CGG | - | chr2_1:4763285-4763304 | None:intergenic | 25.0% |
| ! | TCTATTAACAAAACCTTCTA+TGG | + | chr2_1:4763287-4763306 | Msa0189350:intron | 25.0% |
| !! | AATTGTTTGGAATTAAGTGT+TGG | - | chr2_1:4763321-4763340 | None:intergenic | 25.0% |
| ! | TGGAGAAAGATGATTATTAA+TGG | + | chr2_1:4763446-4763465 | Msa0189350:intron | 25.0% |
| ! | GGAGAAAGATGATTATTAAT+GGG | + | chr2_1:4763447-4763466 | Msa0189350:intron | 25.0% |
| ! | GAGAAAGATGATTATTAATG+GGG | + | chr2_1:4763448-4763467 | Msa0189350:intron | 25.0% |
| !!! | TTGTGTTTTTTGCTTTATGT+TGG | + | chr2_1:4763705-4763724 | Msa0189350:CDS | 25.0% |
| ! | GTAATTTAACAATGTCTTGA+AGG | - | chr2_1:4763958-4763977 | None:intergenic | 25.0% |
| ! | TGTTCTATCTATGCACTTTT+TGG | - | chr2_1:4761447-4761466 | None:intergenic | 30.0% |
| ! | TCACATATCCTCATGATTTT+AGG | + | chr2_1:4761521-4761540 | Msa0189350:intron | 30.0% |
| ACTTTGTACCTAAAATCATG+AGG | - | chr2_1:4761532-4761551 | None:intergenic | 30.0% | |
| TGTATGTGTAAGTCTAACTA+AGG | - | chr2_1:4761560-4761579 | None:intergenic | 30.0% | |
| TTGGTATTTCGTAGTATTTG+AGG | - | chr2_1:4761678-4761697 | None:intergenic | 30.0% | |
| !!! | GTATTTTTTGGTAGAGTTGA+GGG | - | chr2_1:4761880-4761899 | None:intergenic | 30.0% |
| !!! | AGTATTTTTTGGTAGAGTTG+AGG | - | chr2_1:4761881-4761900 | None:intergenic | 30.0% |
| AGACACATATAATTATCCAC+TGG | - | chr2_1:4761956-4761975 | None:intergenic | 30.0% | |
| !!! | CAAGAGTTTTTTTAGCCTTA+AGG | - | chr2_1:4761992-4762011 | None:intergenic | 30.0% |
| !! | TTGTCTGTTGGTATTGATTA+AGG | + | chr2_1:4762059-4762078 | Msa0189350:intron | 30.0% |
| TTCTCGTGAATTAACCAAAT+TGG | + | chr2_1:4762146-4762165 | Msa0189350:intron | 30.0% | |
| CATCTCAAAATGGTTTAATG+TGG | - | chr2_1:4762386-4762405 | None:intergenic | 30.0% | |
| ATGGTAAGTATCAAAATGCA+AGG | - | chr2_1:4762432-4762451 | None:intergenic | 30.0% | |
| ! | TTTGATACTTACCATTTTGC+TGG | + | chr2_1:4762437-4762456 | Msa0189350:intron | 30.0% |
| TGCTTATATTAGTGACTAGA+GGG | - | chr2_1:4762642-4762661 | None:intergenic | 30.0% | |
| TTGCTTATATTAGTGACTAG+AGG | - | chr2_1:4762643-4762662 | None:intergenic | 30.0% | |
| !!! | CTCAAGACATTTTTTAGGTT+TGG | - | chr2_1:4762793-4762812 | None:intergenic | 30.0% |
| GTTTGAATGAATTTGAGTGT+TGG | + | chr2_1:4762902-4762921 | Msa0189350:intron | 30.0% | |
| AATTGGTTGTTTGAAAATCC+AGG | + | chr2_1:4762972-4762991 | Msa0189350:intron | 30.0% | |
| ! | TTTTACCATCTGAAGATTTC+CGG | + | chr2_1:4763005-4763024 | Msa0189350:CDS | 30.0% |
| !! | TTGTTAGATTCGAGTTTTGT+TGG | + | chr2_1:4763052-4763071 | Msa0189350:intron | 30.0% |
| GACTACAAACATAACTGTAT+TGG | - | chr2_1:4763183-4763202 | None:intergenic | 30.0% | |
| TTGTTACCAGATACTTAGAA+TGG | + | chr2_1:4763618-4763637 | Msa0189350:CDS | 30.0% | |
| AAAAACACAAATTGGGCAAT+AGG | - | chr2_1:4763695-4763714 | None:intergenic | 30.0% | |
| ! | TAGTACTTGTAAGTGTTGTT+AGG | + | chr2_1:4763788-4763807 | Msa0189350:three_prime_UTR | 30.0% |
| TATGGGTGGAATTGGAAAAA+AGG | + | chr2_1:4761242-4761261 | Msa0189350:intron | 35.0% | |
| AGAACAACTCTCATGTCATA+AGG | + | chr2_1:4761461-4761480 | Msa0189350:intron | 35.0% | |
| TGTGTAAGTCTAACTAAGGT+TGG | - | chr2_1:4761556-4761575 | None:intergenic | 35.0% | |
| CTACGAAATACCAACATAAC+CGG | + | chr2_1:4761684-4761703 | Msa0189350:intron | 35.0% | |
| !!! | AGGATGGAAGCAGTATTTTT+TGG | - | chr2_1:4761892-4761911 | None:intergenic | 35.0% |
| CTTTAGCAGGAAAAACCTTA+AGG | + | chr2_1:4761974-4761993 | Msa0189350:intron | 35.0% | |
| CTCTTGCAAAGAGACATTAA+CGG | + | chr2_1:4762006-4762025 | Msa0189350:intron | 35.0% | |
| AATCCAGAATCTCCTATCTA+AGG | + | chr2_1:4762035-4762054 | Msa0189350:intron | 35.0% | |
| AAACCTTAGATAGGAGATTC+TGG | - | chr2_1:4762041-4762060 | None:intergenic | 35.0% | |
| TATTGTTGTGCATGAGATAG+TGG | + | chr2_1:4762303-4762322 | Msa0189350:intron | 35.0% | |
| ! | GCTAGATGGAAATGGAATTT+TGG | - | chr2_1:4762354-4762373 | None:intergenic | 35.0% |
| TATGTCATTAGCCAGCAAAA+TGG | - | chr2_1:4762451-4762470 | None:intergenic | 35.0% | |
| !! | GGAAGGAAAATAGTTTGCTT+TGG | - | chr2_1:4762530-4762549 | None:intergenic | 35.0% |
| !!! | GGGTTCTCAAGACATTTTTT+AGG | - | chr2_1:4762798-4762817 | None:intergenic | 35.0% |
| ! | AATTTGCTTCTTCGACTCTT+GGG | - | chr2_1:4762818-4762837 | None:intergenic | 35.0% |
| ! | AAATTTGCTTCTTCGACTCT+TGG | - | chr2_1:4762819-4762838 | None:intergenic | 35.0% |
| ! | GTCGAAGAAGCAAATTTTCA+AGG | + | chr2_1:4762822-4762841 | Msa0189350:intron | 35.0% |
| TATACTTACCTGTCTAGTCA+AGG | - | chr2_1:4763106-4763125 | None:intergenic | 35.0% | |
| !!! | TTGAAGTTGGTGTTTTGGAT+TGG | + | chr2_1:4763404-4763423 | Msa0189350:intron | 35.0% |
| TCCATGGCATCTTAATTAGT+TGG | + | chr2_1:4763503-4763522 | Msa0189350:intron | 35.0% | |
| CCATGGCATCTTAATTAGTT+GGG | + | chr2_1:4763504-4763523 | Msa0189350:intron | 35.0% | |
| TATGGTTTAAATGCGTTTGC+AGG | + | chr2_1:4763589-4763608 | Msa0189350:intron | 35.0% | |
| CACATTCCATTCTAAGTATC+TGG | - | chr2_1:4763627-4763646 | None:intergenic | 35.0% | |
| ACTTAGAATGGAATGTGAGA+AGG | + | chr2_1:4763630-4763649 | Msa0189350:CDS | 35.0% | |
| TGGATGGATACACTTAATTC+TGG | + | chr2_1:4763653-4763672 | Msa0189350:CDS | 35.0% | |
| !! | GTACTTGTAAGCACTGATAT+AGG | + | chr2_1:4763747-4763766 | Msa0189350:three_prime_UTR | 35.0% |
| GTTGCTGCAATATGGTATGA+GGG | - | chr2_1:4761717-4761736 | None:intergenic | 40.0% | |
| AAGATCTGGTTGCTGCAATA+TGG | - | chr2_1:4761725-4761744 | None:intergenic | 40.0% | |
| TGGTAGAGTTGAGGGAAAAA+AGG | - | chr2_1:4761872-4761891 | None:intergenic | 40.0% | |
| CCAACAGACAAACCTTAGAT+AGG | - | chr2_1:4762050-4762069 | None:intergenic | 40.0% | |
| ! | CCTATCTAAGGTTTGTCTGT+TGG | + | chr2_1:4762047-4762066 | Msa0189350:intron | 40.0% |
| CCAATGTAGCTAGATGGAAA+TGG | - | chr2_1:4762362-4762381 | None:intergenic | 40.0% | |
| CCATTTCCATCTAGCTACAT+TGG | + | chr2_1:4762359-4762378 | Msa0189350:intron | 40.0% | |
| ACTGCTGCTACATCTCAAAA+TGG | - | chr2_1:4762396-4762415 | None:intergenic | 40.0% | |
| TTGCTTATATTAGTGACCGG+AGG | + | chr2_1:4762758-4762777 | Msa0189350:intron | 40.0% | |
| TGCTTATATTAGTGACCGGA+GGG | + | chr2_1:4762759-4762778 | Msa0189350:intron | 40.0% | |
| GGTTGTTTGAAAATCCAGGA+AGG | + | chr2_1:4762976-4762995 | Msa0189350:intron | 40.0% | |
| TAACACCGGAAATCTTCAGA+TGG | - | chr2_1:4763013-4763032 | None:intergenic | 40.0% | |
| TCACATGCCAAATCCAATAC+AGG | - | chr2_1:4763223-4763242 | None:intergenic | 40.0% | |
| AGACAAAAGGCTTATGAGAG+AGG | - | chr2_1:4763366-4763385 | None:intergenic | 40.0% | |
| AACACCAACTTCAAACTGCT+GGG | - | chr2_1:4763398-4763417 | None:intergenic | 40.0% | |
| AAACACCAACTTCAAACTGC+TGG | - | chr2_1:4763399-4763418 | None:intergenic | 40.0% | |
| !!! | GCAGTTTGAAGTTGGTGTTT+TGG | + | chr2_1:4763399-4763418 | Msa0189350:intron | 40.0% |
| !!! | GTTGGTGTTTTGGATTGGTT+TGG | + | chr2_1:4763409-4763428 | Msa0189350:intron | 40.0% |
| TGGGGATATATCACAAACTG+TGG | + | chr2_1:4763466-4763485 | Msa0189350:intron | 40.0% | |
| CCCAACTAATTAAGATGCCA+TGG | - | chr2_1:4763507-4763526 | None:intergenic | 40.0% | |
| TAGAATGGAATGTGAGAAGG+TGG | + | chr2_1:4763633-4763652 | Msa0189350:CDS | 40.0% | |
| ACACTTAATTCTGGCGAGTT+AGG | + | chr2_1:4763662-4763681 | Msa0189350:CDS | 40.0% | |
| ACACATACACTTGCTCACTC+AGG | + | chr2_1:4761571-4761590 | Msa0189350:intron | 45.0% | |
| CACATACACTTGCTCACTCA+GGG | + | chr2_1:4761572-4761591 | Msa0189350:intron | 45.0% | |
| ACATACACTTGCTCACTCAG+GGG | + | chr2_1:4761573-4761592 | Msa0189350:intron | 45.0% | |
| ATGGTATGAGGGAGGTAAAC+CGG | - | chr2_1:4761706-4761725 | None:intergenic | 45.0% | |
| GGTTGCTGCAATATGGTATG+AGG | - | chr2_1:4761718-4761737 | None:intergenic | 45.0% | |
| TTCATCCACTTCTCCACCAA+CGG | + | chr2_1:4761763-4761782 | Msa0189350:intron | 45.0% | |
| TGGTTGCTACAATGGTGTGA+GGG | - | chr2_1:4761796-4761815 | None:intergenic | 45.0% | |
| GACAGATCTGGTTGCTACAA+TGG | - | chr2_1:4761804-4761823 | None:intergenic | 45.0% | |
| TTCATCCACTTCTCCACCAA+CGG | + | chr2_1:4761763-4761782 | Msa0189350:intron | 45.0% | |
| AAAAAGGATCCAACCGTTGG+TGG | - | chr2_1:4761856-4761875 | None:intergenic | 45.0% | |
| GGAAAAAAGGATCCAACCGT+TGG | - | chr2_1:4761859-4761878 | None:intergenic | 45.0% | |
| TGTGGACCAATGTAGCTAGA+TGG | - | chr2_1:4762368-4762387 | None:intergenic | 45.0% | |
| TGGTAAAAACTGAGCCTTCC+TGG | - | chr2_1:4762993-4763012 | None:intergenic | 45.0% | |
| ACTTACCTGTCTAGTCAAGG+AGG | - | chr2_1:4763103-4763122 | None:intergenic | 45.0% | |
| GCCAAATCCAATACAGGTTG+CGG | - | chr2_1:4763217-4763236 | None:intergenic | 45.0% | |
| GTTGGCGACAATACCATAGA+AGG | - | chr2_1:4763303-4763322 | None:intergenic | 45.0% | |
| TGGGAGTCGACATAGACAAA+AGG | - | chr2_1:4763379-4763398 | None:intergenic | 45.0% | |
| ATCACAAACTGTGGCACAGA+AGG | + | chr2_1:4763475-4763494 | Msa0189350:intron | 45.0% | |
| ATGGAATGTGAGAAGGTGGA+TGG | + | chr2_1:4763637-4763656 | Msa0189350:CDS | 45.0% | |
| !!! | TTATTTTAAATTACATAATA+CGG | - | chr2_1:4763866-4763885 | None:intergenic | 5.0% |
| !!! | TATGTAATTTAAAATAAATT+AGG | + | chr2_1:4763869-4763888 | Msa0189350:three_prime_UTR | 5.0% |
| CATACACTTGCTCACTCAGG+GGG | + | chr2_1:4761574-4761593 | Msa0189350:intron | 50.0% | |
| GGGAGGTAAACCGGTTATGT+TGG | - | chr2_1:4761697-4761716 | None:intergenic | 50.0% | |
| GCTGCAATATGGTATGAGGG+AGG | - | chr2_1:4761714-4761733 | None:intergenic | 50.0% | |
| GCAGCAACCAGATCTTTCAC+TGG | + | chr2_1:4761729-4761748 | Msa0189350:intron | 50.0% | |
| GCAGTCTCCAGTGAAAGATC+TGG | - | chr2_1:4761739-4761758 | None:intergenic | 50.0% | |
| GGTGGAGAAGTGGATGAACA+CGG | - | chr2_1:4761761-4761780 | None:intergenic | 50.0% | |
| ! | GTAAACCGTTGGTGGAGAAG+TGG | - | chr2_1:4761771-4761790 | None:intergenic | 50.0% |
| TTGCTACAATGGTGTGAGGG+GGG | - | chr2_1:4761793-4761812 | None:intergenic | 50.0% | |
| GTTGCTACAATGGTGTGAGG+GGG | - | chr2_1:4761794-4761813 | None:intergenic | 50.0% | |
| GGTTGCTACAATGGTGTGAG+GGG | - | chr2_1:4761795-4761814 | None:intergenic | 50.0% | |
| CTGGTTGCTACAATGGTGTG+AGG | - | chr2_1:4761797-4761816 | None:intergenic | 50.0% | |
| GTAGCAACCAGATCTGTCAC+TGG | + | chr2_1:4761806-4761825 | Msa0189350:intron | 50.0% | |
| GCAGTTTCCAGTGACAGATC+TGG | - | chr2_1:4761816-4761835 | None:intergenic | 50.0% | |
| GGTGGAGAAGTGGATGAACA+CGG | - | chr2_1:4761761-4761780 | None:intergenic | 50.0% | |
| CTCAACCTCCTTGACTAGAC+AGG | + | chr2_1:4763095-4763114 | Msa0189350:intron | 50.0% | |
| GAGTTTGCCGCAACCTGTAT+TGG | + | chr2_1:4763207-4763226 | Msa0189350:intron | 50.0% | |
| GCCGCAACCTGTATTGGATT+TGG | + | chr2_1:4763213-4763232 | Msa0189350:intron | 50.0% | |
| ! | GACTCCCAGCAGTTTGAAGT+TGG | + | chr2_1:4763391-4763410 | Msa0189350:intron | 50.0% |
| !! | TGGATTGGTTTGGCAGACTG+TGG | + | chr2_1:4763419-4763438 | Msa0189350:intron | 50.0% |
| !! | GGATTGGTTTGGCAGACTGT+GGG | + | chr2_1:4763420-4763439 | Msa0189350:intron | 50.0% |
| TCCACTTCTCCACCAACGGT+TGG | + | chr2_1:4761767-4761786 | Msa0189350:intron | 55.0% | |
| ! | TCCAACCGTTGGTGGAGAAG+TGG | - | chr2_1:4761848-4761867 | None:intergenic | 55.0% |
| ! | GGTTTGGGATGTACACCCTC+CGG | - | chr2_1:4762777-4762796 | None:intergenic | 55.0% |
| GTTTGGCAGACTGTGGGAAG+TGG | + | chr2_1:4763426-4763445 | Msa0189350:intron | 55.0% | |
| GGCACAGAAGGCAATCTCCA+TGG | + | chr2_1:4763487-4763506 | Msa0189350:intron | 55.0% | |
| TGAGGGGGGTAAACCGTTGG+TGG | - | chr2_1:4761779-4761798 | None:intergenic | 60.0% | |
| GTGTGAGGGGGGTAAACCGT+TGG | - | chr2_1:4761782-4761801 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 4761237 | 4764008 | 4761237 | ID=Msa0189350;Name=Msa0189350 |
| chr2_1 | mRNA | 4761237 | 4764008 | 4761237 | ID=Msa0189350-mRNA-1;Parent=Msa0189350;Name=Msa0189350-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0|0.33|1|0|0.33|3|275|60 |
| chr2_1 | exon | 4761237 | 4761240 | 4761237 | ID=Msa0189350-mRNA-1:exon:2106;Parent=Msa0189350-mRNA-1 |
| chr2_1 | exon | 4762994 | 4763049 | 4762994 | ID=Msa0189350-mRNA-1:exon:2107;Parent=Msa0189350-mRNA-1 |
| chr2_1 | exon | 4763611 | 4764008 | 4763611 | ID=Msa0189350-mRNA-1:exon:2108;Parent=Msa0189350-mRNA-1 |
| chr2_1 | CDS | 4761237 | 4761240 | 4761237 | ID=Msa0189350-mRNA-1:cds;Parent=Msa0189350-mRNA-1 |
| chr2_1 | CDS | 4762994 | 4763049 | 4762994 | ID=Msa0189350-mRNA-1:cds;Parent=Msa0189350-mRNA-1 |
| chr2_1 | CDS | 4763611 | 4763733 | 4763611 | ID=Msa0189350-mRNA-1:cds;Parent=Msa0189350-mRNA-1 |
| chr2_1 | three_prime_UTR | 4763734 | 4764008 | 4763734 | ID=Msa0189350-mRNA-1:three_prime_utr;Parent=Msa0189350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
