AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0060600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0060600 MtrunA17_Chr1g0160381 71.895 153 43 0 1 153 5 157 1.37e-81 237
Msa0060600 MtrunA17_Chr1g0160371 71.242 153 44 0 1 153 1 153 4.80e-79 231
Msa0060600 MtrunA17_Chr1g0160391 60.759 158 57 2 1 153 1 158 1.08e-62 190
Msa0060600 MtrunA17_Chr1g0160351 74.194 93 24 0 61 153 2 94 7.13e-46 145
Msa0060600 MtrunA17_Chr8g0355761 44.079 152 82 2 1 151 1 150 1.19e-43 141
Msa0060600 MtrunA17_Chr8g0355781 45.395 152 80 2 1 151 1 150 6.43e-43 139
Msa0060600 MtrunA17_Chr8g0355721 44.371 151 81 2 1 150 1 149 4.20e-42 137
Msa0060600 MtrunA17_Chr8g0355661 44.737 152 80 3 1 151 1 149 7.98e-42 136
Msa0060600 MtrunA17_Chr8g0355741 43.421 152 83 2 1 151 1 150 2.32e-41 135
Msa0060600 MtrunA17_Chr8g0355811 42.105 152 84 3 1 151 1 149 2.74e-41 135
Msa0060600 MtrunA17_Chr8g0355821 40.132 152 87 3 1 151 1 149 6.97e-39 129
Msa0060600 MtrunA17_Chr8g0355771 40.132 152 87 3 1 151 1 149 1.44e-38 128
Msa0060600 MtrunA17_Chr8g0355641 42.763 152 84 2 1 151 1 150 2.84e-38 127
Msa0060600 MtrunA17_Chr8g0355791 41.447 152 85 3 1 151 1 149 6.24e-38 127
Msa0060600 MtrunA17_Chr8g0355801 39.474 152 88 3 1 151 1 149 8.65e-38 126
Msa0060600 MtrunA17_Chr8g0339261 34.615 156 96 4 1 153 1 153 3.75e-28 102
Msa0060600 MtrunA17_Chr1g0160801 38.462 143 78 4 11 151 11 145 1.18e-24 92.8
Msa0060600 MtrunA17_Chr5g0413971 28.105 153 103 5 1 150 3 151 5.93e-13 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0060600 AT5G28010.1 39.610 154 89 3 2 153 14 165 9.59e-34 117
Msa0060600 AT5G28010.2 39.610 154 89 3 2 153 14 165 9.59e-34 117
Msa0060600 AT1G70890.1 37.662 154 92 3 2 153 6 157 2.50e-32 113
Msa0060600 AT1G70840.1 36.364 154 94 3 2 153 19 170 1.36e-30 108
Msa0060600 AT1G70830.5 36.364 154 94 3 2 153 21 172 3.20e-30 108
Msa0060600 AT1G70830.3 36.364 154 94 3 2 153 21 172 7.03e-30 108
Msa0060600 AT1G70830.2 36.364 154 94 3 2 153 21 172 2.71e-29 107
Msa0060600 AT5G28000.1 35.714 154 95 3 2 153 12 163 6.46e-29 104
Msa0060600 AT1G70830.1 36.364 154 94 3 2 153 21 172 1.15e-28 107
Msa0060600 AT1G70830.1 35.714 154 95 3 2 153 183 334 4.03e-27 103
Msa0060600 AT1G70850.2 34.868 152 95 3 2 151 8 157 4.28e-28 104
Msa0060600 AT1G70830.4 35.714 154 95 3 2 153 136 287 1.36e-27 104
Msa0060600 AT1G70830.4 36.458 96 58 2 59 153 32 125 1.28e-15 72.4
Msa0060600 AT1G70850.3 34.868 152 95 3 2 151 8 157 1.83e-27 104
Msa0060600 AT1G70850.3 34.965 143 89 3 13 153 175 315 5.34e-26 100
Msa0060600 AT1G70850.1 34.868 152 95 3 2 151 8 157 1.83e-27 104
Msa0060600 AT1G70850.1 34.965 143 89 3 13 153 175 315 5.34e-26 100
Msa0060600 AT1G23130.1 32.026 153 101 2 2 153 9 159 1.35e-25 95.9
Msa0060600 AT1G14930.1 34.211 152 96 3 1 151 1 149 4.39e-24 91.7
Msa0060600 AT1G14950.1 33.553 152 97 3 1 151 1 149 1.39e-22 87.8
Msa0060600 AT1G70880.1 29.870 154 104 3 2 153 7 158 2.06e-22 87.8
Msa0060600 AT1G35260.1 29.655 145 97 3 9 151 8 149 3.56e-22 87.0
Msa0060600 AT1G24020.1 34.416 154 94 5 1 151 1 150 3.82e-21 84.3
Msa0060600 AT1G24020.2 34.416 154 94 5 1 151 1 150 3.82e-21 84.3
Msa0060600 AT1G70870.1 33.113 151 87 3 1 151 1 137 5.22e-21 83.6
Msa0060600 AT4G14060.1 31.579 152 100 3 1 151 1 149 2.32e-20 82.0
Msa0060600 AT2G01520.1 31.579 152 100 3 1 151 1 149 2.47e-20 82.0
Msa0060600 AT1G30990.1 30.921 152 100 3 1 151 1 148 2.14e-19 79.7
Msa0060600 AT1G14960.1 30.921 152 101 3 1 151 1 149 3.33e-19 79.3
Msa0060600 AT4G23670.1 32.450 151 98 3 1 150 1 148 6.65e-19 78.6
Msa0060600 AT1G23120.1 30.556 144 94 3 10 153 10 147 2.26e-18 77.0
Msa0060600 AT1G23120.2 31.169 154 98 4 2 153 50 197 3.35e-18 77.8
Msa0060600 AT2G01530.1 30.263 152 102 3 1 151 1 149 1.52e-17 74.7
Msa0060600 AT1G14940.1 28.947 152 104 3 1 151 1 149 3.07e-17 74.3
Msa0060600 AT4G23680.1 30.464 151 101 3 1 150 1 148 3.94e-17 73.9
Msa0060600 AT3G26450.1 29.412 153 103 4 1 151 1 150 1.40e-16 72.4
Msa0060600 AT1G35310.1 28.169 142 98 3 13 153 12 150 5.48e-16 70.9
Msa0060600 AT3G26460.1 29.412 153 103 4 1 151 1 150 4.12e-15 68.6

Find 35 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTACTTATTAAATAATTTA+TGG 0.133963 1_2:+18381813 Msa0060600:three_prime_UTR
ATTGCCTGCAAAATAATTTA+TGG 0.170218 1_2:+18381889 Msa0060600:three_prime_UTR
CTTGAGTTTGATTTCTAGTA+TGG 0.265947 1_2:+18382018 Msa0060600:three_prime_UTR
GAAAAGTCTAAGTATGAATT+AGG 0.290488 1_2:-18381701 None:intergenic
TGAGAATTACAAGAGTTTAA+AGG 0.306517 1_2:+18381583 Msa0060600:CDS
AACAAAGACGAAGTGTGTTC+TGG 0.384362 1_2:+18381780 Msa0060600:three_prime_UTR
TGTATGTCATTAGAGATATT+AGG 0.397516 1_2:-18380454 None:intergenic
ATCAAATATAGCCTCTTTGA+TGG 0.402321 1_2:+18381551 Msa0060600:CDS
AAACACTGGGAATATACAAT+AGG 0.430950 1_2:+18380523 Msa0060600:CDS
ACGGCATACCTAGGCTTTGA+AGG 0.432480 1_2:-18381920 None:intergenic
AATATTAGAGAGCAGAGAAA+TGG 0.450933 1_2:+18380342 Msa0060600:exon
CTAGATTGCATCAAGGTGAC+TGG 0.494979 1_2:+18380482 Msa0060600:CDS
AAAGCCTAGGTATGCCGTAA+AGG 0.514929 1_2:+18381925 Msa0060600:three_prime_UTR
TTTCTTTACCTTCAAAGCCT+AGG 0.517018 1_2:+18381912 Msa0060600:three_prime_UTR
AATATTACAAGTGATTGATA+AGG 0.525571 1_2:+18381607 Msa0060600:CDS
AAGGTGGTGGGATTGTGAAA+TGG 0.530026 1_2:+18381633 Msa0060600:CDS
ATTGATAAGGAACAAGGTGG+TGG 0.532194 1_2:+18381620 Msa0060600:CDS
ACATTATAAAACTTAGCAGC+TGG 0.552667 1_2:-18380406 None:intergenic
ATGTTGGTTCTGTCAAACAC+TGG 0.553560 1_2:+18380509 Msa0060600:CDS
CAACATTGTATCGAGAGAGT+TGG 0.565217 1_2:+18381969 Msa0060600:three_prime_UTR
TCAAATATAGCCTCTTTGAT+GGG 0.565633 1_2:+18381552 Msa0060600:CDS
TTGATAAGGAACAAGGTGGT+GGG 0.566665 1_2:+18381621 Msa0060600:CDS
AGCAGAGAAATGGCTTTGAG+TGG 0.572767 1_2:+18380352 Msa0060600:exon
CAAGGTGACTGGGAAAATGT+TGG 0.574551 1_2:+18380493 Msa0060600:CDS
AATTGATGCTCATATTGTCA+TGG 0.580062 1_2:+18381742 Msa0060600:CDS
GCAGAGAAATGGCTTTGAGT+GGG 0.592807 1_2:+18380353 Msa0060600:exon
CAAGTGATTGATAAGGAACA+AGG 0.599684 1_2:+18381614 Msa0060600:CDS
TAGCCTCTTTGATGGGAACG+TGG 0.604910 1_2:+18381559 Msa0060600:CDS
TTTGCCTTTACGGCATACCT+AGG 0.607813 1_2:-18381929 None:intergenic
TGTTGGTTCTGTCAAACACT+GGG 0.608753 1_2:+18380510 Msa0060600:CDS
CACCCACGTTCCCATCAAAG+AGG 0.610559 1_2:-18381562 None:intergenic
TAGATTGCATCAAGGTGACT+GGG 0.615312 1_2:+18380483 Msa0060600:CDS
CATGTAGCTAGATTGCATCA+AGG 0.615345 1_2:+18380475 Msa0060600:CDS
AGCCTCTTTGATGGGAACGT+GGG 0.641629 1_2:+18381560 Msa0060600:CDS
GTGATTGATAAGGAACAAGG+TGG 0.756741 1_2:+18381617 Msa0060600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAATTTGTC+GGG - chr1_2:18380752-18380771 None:intergenic 10.0%
!!! AAATTTTGAATATAAGTATT+AGG - chr1_2:18381386-18381405 None:intergenic 10.0%
!! CTTATATTCAAAATTTAATA+TGG + chr1_2:18381390-18381409 Msa0060600:intron 10.0%
!! AAAAAAAAAAAAAATTTGTC+GGG - chr1_2:18380752-18380771 None:intergenic 10.0%
!!! AAATTTTGAATATAAGTATT+AGG - chr1_2:18381386-18381405 None:intergenic 10.0%
!! CTTATATTCAAAATTTAATA+TGG + chr1_2:18381390-18381409 Msa0060600:intron 10.0%
!! TATACAATAGGTAATAATTA+AGG + chr1_2:18380535-18380554 Msa0060600:intron 15.0%
!! AATATATAACGAAAAGAAAA+AGG + chr1_2:18380787-18380806 Msa0060600:intron 15.0%
!! ATAAATAAACTCAAAAGTTA+TGG - chr1_2:18381297-18381316 None:intergenic 15.0%
!!! ATTCAATTTTTTACATAAGT+TGG - chr1_2:18382045-18382064 None:intergenic 15.0%
!! TATACAATAGGTAATAATTA+AGG + chr1_2:18380535-18380554 Msa0060600:intron 15.0%
!! AATATATAACGAAAAGAAAA+AGG + chr1_2:18380787-18380806 Msa0060600:intron 15.0%
!! ATAAATAAACTCAAAAGTTA+TGG - chr1_2:18381297-18381316 None:intergenic 15.0%
!!! ATTCAATTTTTTACATAAGT+TGG - chr1_2:18382045-18382064 None:intergenic 15.0%
!! GATGAGAACTATATATATAT+GGG - chr1_2:18380625-18380644 None:intergenic 20.0%
!!! TGTTTTTTTTTTCTTTGATG+TGG - chr1_2:18380852-18380871 None:intergenic 20.0%
!! AATAAATACATAGAAACTAG+AGG - chr1_2:18381424-18381443 None:intergenic 20.0%
!! AATATTACAAGTGATTGATA+AGG + chr1_2:18381607-18381626 Msa0060600:CDS 20.0%
!!! TCTAAGTTAACTTTTATGTT+TGG + chr1_2:18381859-18381878 Msa0060600:three_prime_UTR 20.0%
!! GATGAGAACTATATATATAT+GGG - chr1_2:18380625-18380644 None:intergenic 20.0%
!!! TGTTTTTTTTTTCTTTGATG+TGG - chr1_2:18380852-18380871 None:intergenic 20.0%
!! AATAAATACATAGAAACTAG+AGG - chr1_2:18381424-18381443 None:intergenic 20.0%
!! AATATTACAAGTGATTGATA+AGG + chr1_2:18381607-18381626 Msa0060600:CDS 20.0%
!!! TCTAAGTTAACTTTTATGTT+TGG + chr1_2:18381859-18381878 Msa0060600:three_prime_UTR 20.0%
! TGTATGTCATTAGAGATATT+AGG - chr1_2:18380457-18380476 None:intergenic 25.0%
! GGATGAGAACTATATATATA+TGG - chr1_2:18380626-18380645 None:intergenic 25.0%
! CAATAATCACTAAACATCAT+TGG - chr1_2:18380647-18380666 None:intergenic 25.0%
! AAAAAAAAAAATTTGTCGGG+AGG - chr1_2:18380749-18380768 None:intergenic 25.0%
!!! TTTTTTTCTTTGATGTGGTT+CGG - chr1_2:18380847-18380866 None:intergenic 25.0%
! AAAAAAAACAGCAAAAGCTA+AGG + chr1_2:18380862-18380881 Msa0060600:intron 25.0%
!!! ATATTTTTTTGTTAACCCTC+CGG - chr1_2:18381226-18381245 None:intergenic 25.0%
!!! TTATTTTTTTTCCTTCTGCA+AGG - chr1_2:18381487-18381506 None:intergenic 25.0%
! TGAGAATTACAAGAGTTTAA+AGG + chr1_2:18381583-18381602 Msa0060600:CDS 25.0%
! GAAAAGTCTAAGTATGAATT+AGG - chr1_2:18381704-18381723 None:intergenic 25.0%
!! TAACTTTTATGTTTGGAAGT+TGG + chr1_2:18381866-18381885 Msa0060600:three_prime_UTR 25.0%
! ATTGCCTGCAAAATAATTTA+TGG + chr1_2:18381889-18381908 Msa0060600:three_prime_UTR 25.0%
!!! GAAACCATAAATTATTTTGC+AGG - chr1_2:18381896-18381915 None:intergenic 25.0%
! TGTATGTCATTAGAGATATT+AGG - chr1_2:18380457-18380476 None:intergenic 25.0%
! GGATGAGAACTATATATATA+TGG - chr1_2:18380626-18380645 None:intergenic 25.0%
! CAATAATCACTAAACATCAT+TGG - chr1_2:18380647-18380666 None:intergenic 25.0%
! AAAAAAAAAAATTTGTCGGG+AGG - chr1_2:18380749-18380768 None:intergenic 25.0%
!!! TTTTTTTCTTTGATGTGGTT+CGG - chr1_2:18380847-18380866 None:intergenic 25.0%
! AAAAAAAACAGCAAAAGCTA+AGG + chr1_2:18380862-18380881 Msa0060600:intron 25.0%
!!! ATATTTTTTTGTTAACCCTC+CGG - chr1_2:18381226-18381245 None:intergenic 25.0%
!!! TTATTTTTTTTCCTTCTGCA+AGG - chr1_2:18381487-18381506 None:intergenic 25.0%
! TGAGAATTACAAGAGTTTAA+AGG + chr1_2:18381583-18381602 Msa0060600:CDS 25.0%
! GAAAAGTCTAAGTATGAATT+AGG - chr1_2:18381704-18381723 None:intergenic 25.0%
!! TAACTTTTATGTTTGGAAGT+TGG + chr1_2:18381866-18381885 Msa0060600:three_prime_UTR 25.0%
! ATTGCCTGCAAAATAATTTA+TGG + chr1_2:18381889-18381908 Msa0060600:three_prime_UTR 25.0%
!!! GAAACCATAAATTATTTTGC+AGG - chr1_2:18381896-18381915 None:intergenic 25.0%
AATATTAGAGAGCAGAGAAA+TGG + chr1_2:18380342-18380361 Msa0060600:exon 30.0%
ACATTATAAAACTTAGCAGC+TGG - chr1_2:18380409-18380428 None:intergenic 30.0%
AAACACTGGGAATATACAAT+AGG + chr1_2:18380523-18380542 Msa0060600:CDS 30.0%
GATGTAGGATATTTAAAGGA+GGG - chr1_2:18380589-18380608 None:intergenic 30.0%
AGATGTAGGATATTTAAAGG+AGG - chr1_2:18380590-18380609 None:intergenic 30.0%
CACAGATGTAGGATATTTAA+AGG - chr1_2:18380593-18380612 None:intergenic 30.0%
TCTACAAAGTAGATGTACAA+AGG + chr1_2:18380810-18380829 Msa0060600:intron 30.0%
!!! TTTTTTCTTTGATGTGGTTC+GGG - chr1_2:18380846-18380865 None:intergenic 30.0%
AATAATTGTCATCGCAAAAC+AGG + chr1_2:18381339-18381358 Msa0060600:intron 30.0%
ATCAAATATAGCCTCTTTGA+TGG + chr1_2:18381551-18381570 Msa0060600:CDS 30.0%
TCAAATATAGCCTCTTTGAT+GGG + chr1_2:18381552-18381571 Msa0060600:CDS 30.0%
AATTGATGCTCATATTGTCA+TGG + chr1_2:18381742-18381761 Msa0060600:CDS 30.0%
! ATCACAACATTTTGCCTTTA+CGG - chr1_2:18381942-18381961 None:intergenic 30.0%
!! CTTGAGTTTGATTTCTAGTA+TGG + chr1_2:18382018-18382037 Msa0060600:three_prime_UTR 30.0%
AATATTAGAGAGCAGAGAAA+TGG + chr1_2:18380342-18380361 Msa0060600:exon 30.0%
ACATTATAAAACTTAGCAGC+TGG - chr1_2:18380409-18380428 None:intergenic 30.0%
AAACACTGGGAATATACAAT+AGG + chr1_2:18380523-18380542 Msa0060600:CDS 30.0%
GATGTAGGATATTTAAAGGA+GGG - chr1_2:18380589-18380608 None:intergenic 30.0%
AGATGTAGGATATTTAAAGG+AGG - chr1_2:18380590-18380609 None:intergenic 30.0%
CACAGATGTAGGATATTTAA+AGG - chr1_2:18380593-18380612 None:intergenic 30.0%
TCTACAAAGTAGATGTACAA+AGG + chr1_2:18380810-18380829 Msa0060600:intron 30.0%
!!! TTTTTTCTTTGATGTGGTTC+GGG - chr1_2:18380846-18380865 None:intergenic 30.0%
AATAATTGTCATCGCAAAAC+AGG + chr1_2:18381339-18381358 Msa0060600:intron 30.0%
ATCAAATATAGCCTCTTTGA+TGG + chr1_2:18381551-18381570 Msa0060600:CDS 30.0%
TCAAATATAGCCTCTTTGAT+GGG + chr1_2:18381552-18381571 Msa0060600:CDS 30.0%
AATTGATGCTCATATTGTCA+TGG + chr1_2:18381742-18381761 Msa0060600:CDS 30.0%
! ATCACAACATTTTGCCTTTA+CGG - chr1_2:18381942-18381961 None:intergenic 30.0%
!! CTTGAGTTTGATTTCTAGTA+TGG + chr1_2:18382018-18382037 Msa0060600:three_prime_UTR 30.0%
GGATCAAATTACACAGATGT+AGG - chr1_2:18380604-18380623 None:intergenic 35.0%
ATGTGGTGTCTTATGATTCT+CGG - chr1_2:18381025-18381044 None:intergenic 35.0%
! ATGTCCTTTTTATGAATGGG+AGG - chr1_2:18381118-18381137 None:intergenic 35.0%
TCCCATTCATAAAAAGGACA+TGG + chr1_2:18381117-18381136 Msa0060600:intron 35.0%
! CCCATGTCCTTTTTATGAAT+GGG - chr1_2:18381121-18381140 None:intergenic 35.0%
CCCATTCATAAAAAGGACAT+GGG + chr1_2:18381118-18381137 Msa0060600:intron 35.0%
TGGAAATGGTTTCTTGGTAA+AGG - chr1_2:18381154-18381173 None:intergenic 35.0%
TAGTAATTCAGAGTTCGATG+TGG - chr1_2:18381183-18381202 None:intergenic 35.0%
ACATCGAACTCTGAATTACT+AGG + chr1_2:18381182-18381201 Msa0060600:intron 35.0%
CATCGAACTCTGAATTACTA+GGG + chr1_2:18381183-18381202 Msa0060600:intron 35.0%
CAAGTGATTGATAAGGAACA+AGG + chr1_2:18381614-18381633 Msa0060600:CDS 35.0%
TTTCTTTACCTTCAAAGCCT+AGG + chr1_2:18381912-18381931 Msa0060600:three_prime_UTR 35.0%
GGATCAAATTACACAGATGT+AGG - chr1_2:18380604-18380623 None:intergenic 35.0%
ATGTGGTGTCTTATGATTCT+CGG - chr1_2:18381025-18381044 None:intergenic 35.0%
! ATGTCCTTTTTATGAATGGG+AGG - chr1_2:18381118-18381137 None:intergenic 35.0%
TCCCATTCATAAAAAGGACA+TGG + chr1_2:18381117-18381136 Msa0060600:intron 35.0%
! CCCATGTCCTTTTTATGAAT+GGG - chr1_2:18381121-18381140 None:intergenic 35.0%
CCCATTCATAAAAAGGACAT+GGG + chr1_2:18381118-18381137 Msa0060600:intron 35.0%
TGGAAATGGTTTCTTGGTAA+AGG - chr1_2:18381154-18381173 None:intergenic 35.0%
TAGTAATTCAGAGTTCGATG+TGG - chr1_2:18381183-18381202 None:intergenic 35.0%
ACATCGAACTCTGAATTACT+AGG + chr1_2:18381182-18381201 Msa0060600:intron 35.0%
CATCGAACTCTGAATTACTA+GGG + chr1_2:18381183-18381202 Msa0060600:intron 35.0%
CAAGTGATTGATAAGGAACA+AGG + chr1_2:18381614-18381633 Msa0060600:CDS 35.0%
TTTCTTTACCTTCAAAGCCT+AGG + chr1_2:18381912-18381931 Msa0060600:three_prime_UTR 35.0%
CATGTAGCTAGATTGCATCA+AGG + chr1_2:18380475-18380494 Msa0060600:CDS 40.0%
TAGATTGCATCAAGGTGACT+GGG + chr1_2:18380483-18380502 Msa0060600:CDS 40.0%
!! ATGTTGGTTCTGTCAAACAC+TGG + chr1_2:18380509-18380528 Msa0060600:CDS 40.0%
!! TGTTGGTTCTGTCAAACACT+GGG + chr1_2:18380510-18380529 Msa0060600:CDS 40.0%
GTGATTATTGAGCTTTCCCT+AGG + chr1_2:18380657-18380676 Msa0060600:intron 40.0%
CTTTCTAACGATTCGTCCTA+GGG - chr1_2:18380676-18380695 None:intergenic 40.0%
TCTTTCTAACGATTCGTCCT+AGG - chr1_2:18380677-18380696 None:intergenic 40.0%
TGCACCTCCCATTCATAAAA+AGG + chr1_2:18381111-18381130 Msa0060600:intron 40.0%
! GCCCATGTCCTTTTTATGAA+TGG - chr1_2:18381122-18381141 None:intergenic 40.0%
! TGGTCTTGGAAATGGTTTCT+TGG - chr1_2:18381160-18381179 None:intergenic 40.0%
TAATTCAGAGTTCGATGTGG+TGG - chr1_2:18381180-18381199 None:intergenic 40.0%
! TGTTAACCCTCCGGTTTTTA+GGG - chr1_2:18381217-18381236 None:intergenic 40.0%
! TTGTTAACCCTCCGGTTTTT+AGG - chr1_2:18381218-18381237 None:intergenic 40.0%
GTGATTGATAAGGAACAAGG+TGG + chr1_2:18381617-18381636 Msa0060600:CDS 40.0%
ATTGATAAGGAACAAGGTGG+TGG + chr1_2:18381620-18381639 Msa0060600:CDS 40.0%
TTGATAAGGAACAAGGTGGT+GGG + chr1_2:18381621-18381640 Msa0060600:CDS 40.0%
AACAAAGACGAAGTGTGTTC+TGG + chr1_2:18381780-18381799 Msa0060600:three_prime_UTR 40.0%
CAACATTGTATCGAGAGAGT+TGG + chr1_2:18381969-18381988 Msa0060600:three_prime_UTR 40.0%
CATGTAGCTAGATTGCATCA+AGG + chr1_2:18380475-18380494 Msa0060600:CDS 40.0%
TAGATTGCATCAAGGTGACT+GGG + chr1_2:18380483-18380502 Msa0060600:CDS 40.0%
!! ATGTTGGTTCTGTCAAACAC+TGG + chr1_2:18380509-18380528 Msa0060600:CDS 40.0%
!! TGTTGGTTCTGTCAAACACT+GGG + chr1_2:18380510-18380529 Msa0060600:CDS 40.0%
GTGATTATTGAGCTTTCCCT+AGG + chr1_2:18380657-18380676 Msa0060600:intron 40.0%
CTTTCTAACGATTCGTCCTA+GGG - chr1_2:18380676-18380695 None:intergenic 40.0%
TCTTTCTAACGATTCGTCCT+AGG - chr1_2:18380677-18380696 None:intergenic 40.0%
TGCACCTCCCATTCATAAAA+AGG + chr1_2:18381111-18381130 Msa0060600:intron 40.0%
! GCCCATGTCCTTTTTATGAA+TGG - chr1_2:18381122-18381141 None:intergenic 40.0%
! TGGTCTTGGAAATGGTTTCT+TGG - chr1_2:18381160-18381179 None:intergenic 40.0%
TAATTCAGAGTTCGATGTGG+TGG - chr1_2:18381180-18381199 None:intergenic 40.0%
! TGTTAACCCTCCGGTTTTTA+GGG - chr1_2:18381217-18381236 None:intergenic 40.0%
! TTGTTAACCCTCCGGTTTTT+AGG - chr1_2:18381218-18381237 None:intergenic 40.0%
GTGATTGATAAGGAACAAGG+TGG + chr1_2:18381617-18381636 Msa0060600:CDS 40.0%
ATTGATAAGGAACAAGGTGG+TGG + chr1_2:18381620-18381639 Msa0060600:CDS 40.0%
TTGATAAGGAACAAGGTGGT+GGG + chr1_2:18381621-18381640 Msa0060600:CDS 40.0%
AACAAAGACGAAGTGTGTTC+TGG + chr1_2:18381780-18381799 Msa0060600:three_prime_UTR 40.0%
CAACATTGTATCGAGAGAGT+TGG + chr1_2:18381969-18381988 Msa0060600:three_prime_UTR 40.0%
!! AGCAGAGAAATGGCTTTGAG+TGG + chr1_2:18380352-18380371 Msa0060600:exon 45.0%
!! GCAGAGAAATGGCTTTGAGT+GGG + chr1_2:18380353-18380372 Msa0060600:exon 45.0%
CTAGATTGCATCAAGGTGAC+TGG + chr1_2:18380482-18380501 Msa0060600:CDS 45.0%
CAAGGTGACTGGGAAAATGT+TGG + chr1_2:18380493-18380512 Msa0060600:CDS 45.0%
!! CATGTGGCTTGGTGTTTATG+TGG - chr1_2:18380933-18380952 None:intergenic 45.0%
ATGACCACAAACCCTAACCA+GGG + chr1_2:18380950-18380969 Msa0060600:intron 45.0%
ATGTGTTGAACCCGATCGAT+GGG - chr1_2:18381084-18381103 None:intergenic 45.0%
! AAAAAGGACATGGGCTACCA+AGG + chr1_2:18381127-18381146 Msa0060600:intron 45.0%
GGTTTCTTGGTAAAGGACCT+TGG - chr1_2:18381147-18381166 None:intergenic 45.0%
GGTCTCCTTTCCCTAAAAAC+CGG + chr1_2:18381204-18381223 Msa0060600:intron 45.0%
TCCTTTCCCTAAAAACCGGA+GGG + chr1_2:18381208-18381227 Msa0060600:intron 45.0%
TACGTGTGAATCCTTGCAGA+AGG + chr1_2:18381473-18381492 Msa0060600:intron 45.0%
!! AAGGTGGTGGGATTGTGAAA+TGG + chr1_2:18381633-18381652 Msa0060600:CDS 45.0%
AAAGCCTAGGTATGCCGTAA+AGG + chr1_2:18381925-18381944 Msa0060600:three_prime_UTR 45.0%
TTTGCCTTTACGGCATACCT+AGG - chr1_2:18381932-18381951 None:intergenic 45.0%
!! AGCAGAGAAATGGCTTTGAG+TGG + chr1_2:18380352-18380371 Msa0060600:exon 45.0%
!! GCAGAGAAATGGCTTTGAGT+GGG + chr1_2:18380353-18380372 Msa0060600:exon 45.0%
CTAGATTGCATCAAGGTGAC+TGG + chr1_2:18380482-18380501 Msa0060600:CDS 45.0%
CAAGGTGACTGGGAAAATGT+TGG + chr1_2:18380493-18380512 Msa0060600:CDS 45.0%
!! CATGTGGCTTGGTGTTTATG+TGG - chr1_2:18380933-18380952 None:intergenic 45.0%
ATGACCACAAACCCTAACCA+GGG + chr1_2:18380950-18380969 Msa0060600:intron 45.0%
ATGTGTTGAACCCGATCGAT+GGG - chr1_2:18381084-18381103 None:intergenic 45.0%
! AAAAAGGACATGGGCTACCA+AGG + chr1_2:18381127-18381146 Msa0060600:intron 45.0%
GGTTTCTTGGTAAAGGACCT+TGG - chr1_2:18381147-18381166 None:intergenic 45.0%
GGTCTCCTTTCCCTAAAAAC+CGG + chr1_2:18381204-18381223 Msa0060600:intron 45.0%
TCCTTTCCCTAAAAACCGGA+GGG + chr1_2:18381208-18381227 Msa0060600:intron 45.0%
TACGTGTGAATCCTTGCAGA+AGG + chr1_2:18381473-18381492 Msa0060600:intron 45.0%
!! AAGGTGGTGGGATTGTGAAA+TGG + chr1_2:18381633-18381652 Msa0060600:CDS 45.0%
AAAGCCTAGGTATGCCGTAA+AGG + chr1_2:18381925-18381944 Msa0060600:three_prime_UTR 45.0%
TTTGCCTTTACGGCATACCT+AGG - chr1_2:18381932-18381951 None:intergenic 45.0%
!! AAAAAAAAAAAAAAATTTGT+CGG - chr1_2:18380753-18380772 None:intergenic 5.0%
!!! ATTTTTTTTTTTTTTTTAAG+AGG + chr1_2:18380757-18380776 Msa0060600:intron 5.0%
!! ATTACTTATTAAATAATTTA+TGG + chr1_2:18381813-18381832 Msa0060600:three_prime_UTR 5.0%
!! AAAAAAAAAAAAAAATTTGT+CGG - chr1_2:18380753-18380772 None:intergenic 5.0%
!!! ATTTTTTTTTTTTTTTTAAG+AGG + chr1_2:18380757-18380776 Msa0060600:intron 5.0%
!! ATTACTTATTAAATAATTTA+TGG + chr1_2:18381813-18381832 Msa0060600:three_prime_UTR 5.0%
! TGCAGAGGTAAGGTGGCTTT+TGG - chr1_2:18380897-18380916 None:intergenic 50.0%
AAGCCACCTTACCTCTGCAA+AGG + chr1_2:18380898-18380917 Msa0060600:intron 50.0%
GGTTAGGGTTTGTGGTCATG+TGG - chr1_2:18380949-18380968 None:intergenic 50.0%
CATGACCACAAACCCTAACC+AGG + chr1_2:18380949-18380968 Msa0060600:intron 50.0%
AGAGAAGGGCAACTCCAAAG+AGG + chr1_2:18380996-18381015 Msa0060600:intron 50.0%
AAGACACCACATAGACCCGA+TGG + chr1_2:18381033-18381052 Msa0060600:intron 50.0%
AGACACCACATAGACCCGAT+GGG + chr1_2:18381034-18381053 Msa0060600:intron 50.0%
!!! GTATTTTGGCGTCGTGGTCT+AGG - chr1_2:18381061-18381080 None:intergenic 50.0%
CGCCAAAATACCCCATCGAT+CGG + chr1_2:18381070-18381089 Msa0060600:intron 50.0%
GCCAAAATACCCCATCGATC+GGG + chr1_2:18381071-18381090 Msa0060600:intron 50.0%
!! ACCCGATCGATGGGGTATTT+TGG - chr1_2:18381075-18381094 None:intergenic 50.0%
TGTGTTGAACCCGATCGATG+GGG - chr1_2:18381083-18381102 None:intergenic 50.0%
CATGTGTTGAACCCGATCGA+TGG - chr1_2:18381085-18381104 None:intergenic 50.0%
GATCGGGTTCAACACATGAC+TGG + chr1_2:18381087-18381106 Msa0060600:intron 50.0%
! CGATGTGGTGGTCTTGGAAA+TGG - chr1_2:18381168-18381187 None:intergenic 50.0%
AGAGTTCGATGTGGTGGTCT+TGG - chr1_2:18381174-18381193 None:intergenic 50.0%
CTCCTTTCCCTAAAAACCGG+AGG + chr1_2:18381207-18381226 Msa0060600:intron 50.0%
!! ACCCTCCGGTTTTTAGGGAA+AGG - chr1_2:18381212-18381231 None:intergenic 50.0%
TAGCCTCTTTGATGGGAACG+TGG + chr1_2:18381559-18381578 Msa0060600:CDS 50.0%
AGCCTCTTTGATGGGAACGT+GGG + chr1_2:18381560-18381579 Msa0060600:CDS 50.0%
! ACGGCATACCTAGGCTTTGA+AGG - chr1_2:18381923-18381942 None:intergenic 50.0%
! TGCAGAGGTAAGGTGGCTTT+TGG - chr1_2:18380897-18380916 None:intergenic 50.0%
AAGCCACCTTACCTCTGCAA+AGG + chr1_2:18380898-18380917 Msa0060600:intron 50.0%
GGTTAGGGTTTGTGGTCATG+TGG - chr1_2:18380949-18380968 None:intergenic 50.0%
CATGACCACAAACCCTAACC+AGG + chr1_2:18380949-18380968 Msa0060600:intron 50.0%
AGAGAAGGGCAACTCCAAAG+AGG + chr1_2:18380996-18381015 Msa0060600:intron 50.0%
AAGACACCACATAGACCCGA+TGG + chr1_2:18381033-18381052 Msa0060600:intron 50.0%
AGACACCACATAGACCCGAT+GGG + chr1_2:18381034-18381053 Msa0060600:intron 50.0%
!!! GTATTTTGGCGTCGTGGTCT+AGG - chr1_2:18381061-18381080 None:intergenic 50.0%
CGCCAAAATACCCCATCGAT+CGG + chr1_2:18381070-18381089 Msa0060600:intron 50.0%
GCCAAAATACCCCATCGATC+GGG + chr1_2:18381071-18381090 Msa0060600:intron 50.0%
!! ACCCGATCGATGGGGTATTT+TGG - chr1_2:18381075-18381094 None:intergenic 50.0%
TGTGTTGAACCCGATCGATG+GGG - chr1_2:18381083-18381102 None:intergenic 50.0%
CATGTGTTGAACCCGATCGA+TGG - chr1_2:18381085-18381104 None:intergenic 50.0%
GATCGGGTTCAACACATGAC+TGG + chr1_2:18381087-18381106 Msa0060600:intron 50.0%
! CGATGTGGTGGTCTTGGAAA+TGG - chr1_2:18381168-18381187 None:intergenic 50.0%
AGAGTTCGATGTGGTGGTCT+TGG - chr1_2:18381174-18381193 None:intergenic 50.0%
CTCCTTTCCCTAAAAACCGG+AGG + chr1_2:18381207-18381226 Msa0060600:intron 50.0%
!! ACCCTCCGGTTTTTAGGGAA+AGG - chr1_2:18381212-18381231 None:intergenic 50.0%
TAGCCTCTTTGATGGGAACG+TGG + chr1_2:18381559-18381578 Msa0060600:CDS 50.0%
AGCCTCTTTGATGGGAACGT+GGG + chr1_2:18381560-18381579 Msa0060600:CDS 50.0%
! ACGGCATACCTAGGCTTTGA+AGG - chr1_2:18381923-18381942 None:intergenic 50.0%
CCACCTTACCTCTGCAAAGG+CGG + chr1_2:18380901-18380920 Msa0060600:intron 55.0%
TCTCCGCCTTTGCAGAGGTA+AGG - chr1_2:18380907-18380926 None:intergenic 55.0%
GGGTTTGTGGTCATGTGGCT+TGG - chr1_2:18380944-18380963 None:intergenic 55.0%
TGGTCCCTGGTTAGGGTTTG+TGG - chr1_2:18380957-18380976 None:intergenic 55.0%
! AGTAGGCTGGTCCCTGGTTA+GGG - chr1_2:18380964-18380983 None:intergenic 55.0%
TCTCTCTTCCCGCCTTCAGT+AGG - chr1_2:18380981-18381000 None:intergenic 55.0%
ACTGAAGGCGGGAAGAGAGA+AGG + chr1_2:18380981-18381000 Msa0060600:intron 55.0%
CTGAAGGCGGGAAGAGAGAA+GGG + chr1_2:18380982-18381001 Msa0060600:intron 55.0%
GAAGGGCAACTCCAAAGAGG+CGG + chr1_2:18380999-18381018 Msa0060600:intron 55.0%
ATGATTCTCGGCCGCCTCTT+TGG - chr1_2:18381013-18381032 None:intergenic 55.0%
TAGGTCCCATCGGGTCTATG+TGG - chr1_2:18381042-18381061 None:intergenic 55.0%
!!! GATGGGGTATTTTGGCGTCG+TGG - chr1_2:18381067-18381086 None:intergenic 55.0%
CACCCACGTTCCCATCAAAG+AGG - chr1_2:18381565-18381584 None:intergenic 55.0%
CCACCTTACCTCTGCAAAGG+CGG + chr1_2:18380901-18380920 Msa0060600:intron 55.0%
TCTCCGCCTTTGCAGAGGTA+AGG - chr1_2:18380907-18380926 None:intergenic 55.0%
GGGTTTGTGGTCATGTGGCT+TGG - chr1_2:18380944-18380963 None:intergenic 55.0%
TGGTCCCTGGTTAGGGTTTG+TGG - chr1_2:18380957-18380976 None:intergenic 55.0%
! AGTAGGCTGGTCCCTGGTTA+GGG - chr1_2:18380964-18380983 None:intergenic 55.0%
TCTCTCTTCCCGCCTTCAGT+AGG - chr1_2:18380981-18381000 None:intergenic 55.0%
ACTGAAGGCGGGAAGAGAGA+AGG + chr1_2:18380981-18381000 Msa0060600:intron 55.0%
CTGAAGGCGGGAAGAGAGAA+GGG + chr1_2:18380982-18381001 Msa0060600:intron 55.0%
GAAGGGCAACTCCAAAGAGG+CGG + chr1_2:18380999-18381018 Msa0060600:intron 55.0%
ATGATTCTCGGCCGCCTCTT+TGG - chr1_2:18381013-18381032 None:intergenic 55.0%
TAGGTCCCATCGGGTCTATG+TGG - chr1_2:18381042-18381061 None:intergenic 55.0%
!!! GATGGGGTATTTTGGCGTCG+TGG - chr1_2:18381067-18381086 None:intergenic 55.0%
CACCCACGTTCCCATCAAAG+AGG - chr1_2:18381565-18381584 None:intergenic 55.0%
CCGCCTTTGCAGAGGTAAGG+TGG - chr1_2:18380904-18380923 None:intergenic 60.0%
GGTGTTCTCCGCCTTTGCAG+AGG - chr1_2:18380912-18380931 None:intergenic 60.0%
! CAGTAGGCTGGTCCCTGGTT+AGG - chr1_2:18380965-18380984 None:intergenic 60.0%
ACCAGGGACCAGCCTACTGA+AGG + chr1_2:18380966-18380985 Msa0060600:intron 60.0%
AGGGACCAGCCTACTGAAGG+CGG + chr1_2:18380969-18380988 Msa0060600:intron 60.0%
TCTTCCCGCCTTCAGTAGGC+TGG - chr1_2:18380977-18380996 None:intergenic 60.0%
GTCGTGGTCTAGGTCCCATC+GGG - chr1_2:18381051-18381070 None:intergenic 60.0%
CGTCGTGGTCTAGGTCCCAT+CGG - chr1_2:18381052-18381071 None:intergenic 60.0%
CCGCCTTTGCAGAGGTAAGG+TGG - chr1_2:18380904-18380923 None:intergenic 60.0%
GGTGTTCTCCGCCTTTGCAG+AGG - chr1_2:18380912-18380931 None:intergenic 60.0%
! CAGTAGGCTGGTCCCTGGTT+AGG - chr1_2:18380965-18380984 None:intergenic 60.0%
ACCAGGGACCAGCCTACTGA+AGG + chr1_2:18380966-18380985 Msa0060600:intron 60.0%
AGGGACCAGCCTACTGAAGG+CGG + chr1_2:18380969-18380988 Msa0060600:intron 60.0%
TCTTCCCGCCTTCAGTAGGC+TGG - chr1_2:18380977-18380996 None:intergenic 60.0%
GTCGTGGTCTAGGTCCCATC+GGG - chr1_2:18381051-18381070 None:intergenic 60.0%
CGTCGTGGTCTAGGTCCCAT+CGG - chr1_2:18381052-18381071 None:intergenic 60.0%
! GCCTTCAGTAGGCTGGTCCC+TGG - chr1_2:18380970-18380989 None:intergenic 65.0%
GGGACCAGCCTACTGAAGGC+GGG + chr1_2:18380970-18380989 Msa0060600:intron 65.0%
! GCCTTCAGTAGGCTGGTCCC+TGG - chr1_2:18380970-18380989 None:intergenic 65.0%
GGGACCAGCCTACTGAAGGC+GGG + chr1_2:18380970-18380989 Msa0060600:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 18380330 18382069 18380330 ID=Msa0060600;Name=Msa0060600
chr1_2 mRNA 18380330 18382069 18380330 ID=Msa0060600-mRNA-1;Parent=Msa0060600;Name=Msa0060600-mRNA-1;_AED=0.02;_eAED=0.02;_QI=31|1|1|1|1|1|2|300|153
chr1_2 exon 18380330 18380544 18380330 ID=Msa0060600-mRNA-1:exon:7125;Parent=Msa0060600-mRNA-1
chr1_2 exon 18381492 18382069 18381492 ID=Msa0060600-mRNA-1:exon:7126;Parent=Msa0060600-mRNA-1
chr1_2 five_prime_UTR 18380330 18380360 18380330 ID=Msa0060600-mRNA-1:five_prime_utr;Parent=Msa0060600-mRNA-1
chr1_2 CDS 18380361 18380544 18380361 ID=Msa0060600-mRNA-1:cds;Parent=Msa0060600-mRNA-1
chr1_2 CDS 18381492 18381769 18381492 ID=Msa0060600-mRNA-1:cds;Parent=Msa0060600-mRNA-1
chr1_2 three_prime_UTR 18381770 18382069 18381770 ID=Msa0060600-mRNA-1:three_prime_utr;Parent=Msa0060600-mRNA-1
Gene Sequence

>Msa0060600

ATGGCTTTGAGTGGGAAAGTGTTCACTGAAATAGAGATTCAAGCACCAGCTGCTAAGTTTTATAATGTTTGCAAGAAGCAACTTCAACAACTTCCTAATATCTCTAATGACATACATGTAGCTAGATTGCATCAAGGTGACTGGGAAAATGTTGGTTCTGTCAAACACTGGGAATATACAATAGAAGGAAAAAAAATAATTGCAAAAGAAAAAATTGAGACTATAGATGATGACAATAAGATAATCAAATATAGCCTCTTTGATGGGAACGTGGGTGAGAATTACAAGAGTTTAAAGGCAATATTACAAGTGATTGATAAGGAACAAGGTGGTGGGATTGTGAAATGGACTTTTGAATATGAAAAGTTAAAGCAAGATATTACAATTGCATCTCCTAATTCATACTTAGACTTTTCTGCAAAGATCACAAAAGAAATTGATGCTCATATTGTCATGGAATAG

Protein sequence

>Msa0060600

MALSGKVFTEIEIQAPAAKFYNVCKKQLQQLPNISNDIHVARLHQGDWENVGSVKHWEYTIEGKKIIAKEKIETIDDDNKIIKYSLFDGNVGENYKSLKAILQVIDKEQGGGIVKWTFEYEKLKQDITIASPNSYLDFSAKITKEIDAHIVME*