AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0105340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0105340 MtrunA17_Chr1g0160381 66.013 153 38 1 1 139 5 157 4.37e-72 213
Msa0105340 MtrunA17_Chr1g0160371 65.359 153 39 1 1 139 1 153 4.98e-70 207
Msa0105340 MtrunA17_Chr1g0160391 56.329 158 50 3 1 139 1 158 6.84e-56 172
Msa0105340 MtrunA17_Chr1g0160351 75.000 80 20 0 60 139 15 94 2.61e-40 130
Msa0105340 MtrunA17_Chr8g0355761 41.447 152 72 3 1 137 1 150 3.30e-37 124
Msa0105340 MtrunA17_Chr8g0355661 41.722 151 72 3 1 137 1 149 7.27e-37 123
Msa0105340 MtrunA17_Chr8g0355781 42.105 152 71 3 1 137 1 150 8.06e-37 123
Msa0105340 MtrunA17_Chr8g0355721 41.722 151 71 3 1 136 1 149 9.71e-36 120
Msa0105340 MtrunA17_Chr8g0355811 40.132 152 73 4 1 137 1 149 2.79e-35 119
Msa0105340 MtrunA17_Chr8g0355741 39.474 152 75 3 1 137 1 150 5.54e-34 116
Msa0105340 MtrunA17_Chr8g0355641 40.132 152 74 3 1 137 1 150 6.32e-33 113
Msa0105340 MtrunA17_Chr8g0355771 38.158 152 76 4 1 137 1 149 1.99e-32 112
Msa0105340 MtrunA17_Chr8g0355821 37.500 152 77 4 1 137 1 149 2.28e-32 112
Msa0105340 MtrunA17_Chr8g0355791 39.474 152 74 4 1 137 1 149 5.89e-32 111
Msa0105340 MtrunA17_Chr8g0355801 37.500 152 77 4 1 137 1 149 1.16e-31 110
Msa0105340 MtrunA17_Chr8g0339261 30.769 156 88 5 1 139 1 153 4.39e-20 80.9
Msa0105340 MtrunA17_Chr1g0160801 34.507 142 71 4 11 137 11 145 6.52e-19 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0105340 AT5G28010.1 35.065 154 82 4 2 139 14 165 1.20e-25 95.5
Msa0105340 AT5G28010.2 35.065 154 82 4 2 139 14 165 1.20e-25 95.5
Msa0105340 AT1G70890.1 33.766 154 84 4 2 139 6 157 3.45e-25 94.4
Msa0105340 AT1G70840.1 33.766 154 84 4 2 139 19 170 1.75e-23 90.1
Msa0105340 AT1G70830.5 32.468 154 86 4 2 139 21 172 1.82e-22 87.8
Msa0105340 AT1G70830.3 32.468 154 86 4 2 139 21 172 3.04e-22 87.8
Msa0105340 AT1G70830.4 33.766 154 84 4 2 139 136 287 9.30e-22 88.2
Msa0105340 AT1G70830.4 34.568 81 50 2 60 139 47 125 4.20e-11 59.3
Msa0105340 AT1G70830.2 32.468 154 86 4 2 139 21 172 1.13e-21 87.4
Msa0105340 AT1G70830.1 33.766 154 84 4 2 139 183 334 2.42e-21 87.8
Msa0105340 AT1G70830.1 32.468 154 86 4 2 139 21 172 3.13e-21 87.4
Msa0105340 AT1G70850.2 32.237 152 85 4 2 137 8 157 5.95e-21 85.1
Msa0105340 AT5G28000.1 31.169 154 88 4 2 139 12 163 6.74e-21 83.6
Msa0105340 AT1G70850.3 32.237 152 85 4 2 137 8 157 1.87e-20 85.1
Msa0105340 AT1G70850.3 30.769 143 81 4 13 139 175 315 1.19e-18 80.5
Msa0105340 AT1G70850.1 32.237 152 85 4 2 137 8 157 1.87e-20 85.1
Msa0105340 AT1G70850.1 30.769 143 81 4 13 139 175 315 1.19e-18 80.5
Msa0105340 AT1G14930.1 30.464 151 89 3 1 137 1 149 1.45e-18 77.0
Msa0105340 AT1G23130.1 29.412 153 91 3 2 139 9 159 5.62e-18 75.9
Msa0105340 AT1G14950.1 31.126 151 88 4 1 137 1 149 2.20e-17 73.9
Msa0105340 AT1G24020.1 30.719 153 87 4 1 137 1 150 1.71e-16 71.6
Msa0105340 AT1G24020.2 30.719 153 87 4 1 137 1 150 1.71e-16 71.6
Msa0105340 AT1G70880.1 26.623 154 95 4 2 139 7 158 4.82e-16 70.9
Msa0105340 AT1G70870.1 30.000 150 79 3 1 137 1 137 7.86e-16 69.7
Msa0105340 AT1G35260.1 26.897 145 87 4 9 137 8 149 1.49e-15 69.3
Msa0105340 AT2G01520.1 28.477 151 92 3 1 137 1 149 2.73e-15 68.6
Msa0105340 AT4G14060.1 28.477 151 92 3 1 137 1 149 3.35e-15 68.2
Msa0105340 AT1G30990.1 27.815 151 92 3 1 137 1 148 1.06e-14 67.0
Msa0105340 AT4G23670.1 28.000 150 92 3 1 136 1 148 1.74e-13 63.9
Msa0105340 AT1G23120.2 27.451 153 91 4 2 139 50 197 2.75e-13 64.3
Msa0105340 AT1G23120.1 26.573 143 87 3 10 139 10 147 2.82e-13 63.2
Msa0105340 AT3G26450.1 26.316 152 95 3 1 137 1 150 7.20e-13 62.4
Msa0105340 AT2G01530.1 27.152 151 94 3 1 137 1 149 1.37e-12 61.6
Msa0105340 AT1G14940.1 25.166 151 97 3 1 137 1 149 3.56e-12 60.5

Find 26 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAAGTCTAAGTATGAATT+AGG 0.290488 1_3:-13800997 None:intergenic
TGAGAATTACAAGAGTTTAA+AGG 0.306517 1_3:+13800879 Msa0105340:CDS
TGTATGTCATTAGAGATATT+AGG 0.397516 1_3:-13799749 None:intergenic
ATCAAATATAGCCTCTTTGA+TGG 0.402321 1_3:+13800847 Msa0105340:CDS
AAACACTGGGAATATACAAT+AGG 0.430950 1_3:+13799818 Msa0105340:CDS
AATATTAGAGAGCAGAGAAA+TGG 0.459202 1_3:+13799637 Msa0105340:exon
CTAGATTGCATCAAGGTGAC+TGG 0.494979 1_3:+13799777 Msa0105340:CDS
AGCAGAGAAATGGCTTTAAG+TGG 0.497628 1_3:+13799647 Msa0105340:exon
AATATTACAAGTGATTGATA+AGG 0.525571 1_3:+13800903 Msa0105340:CDS
AAGGTGGTGGGATTGTGAAA+TGG 0.530026 1_3:+13800929 Msa0105340:CDS
ATTGATAAGGAACAAGGTGG+TGG 0.532194 1_3:+13800916 Msa0105340:CDS
ACATTATAAAACTTAGCAGC+TGG 0.552667 1_3:-13799701 None:intergenic
ATGTTGGTTCTGTCAAACAC+TGG 0.553560 1_3:+13799804 Msa0105340:CDS
TCAAATATAGCCTCTTTGAT+GGG 0.565633 1_3:+13800848 Msa0105340:CDS
TTGATAAGGAACAAGGTGGT+GGG 0.566665 1_3:+13800917 Msa0105340:CDS
CAAGGTGACTGGGAAAATGT+TGG 0.574551 1_3:+13799788 Msa0105340:CDS
AATTGATGCTCATATTGTCA+TGG 0.580062 1_3:+13801038 Msa0105340:CDS
CAAGTGATTGATAAGGAACA+AGG 0.599684 1_3:+13800910 Msa0105340:CDS
TAGCCTCTTTGATGGGAACG+TGG 0.604910 1_3:+13800855 Msa0105340:CDS
TGTTGGTTCTGTCAAACACT+GGG 0.608753 1_3:+13799805 Msa0105340:CDS
CACCCACGTTCCCATCAAAG+AGG 0.610559 1_3:-13800858 None:intergenic
TAGATTGCATCAAGGTGACT+GGG 0.615312 1_3:+13799778 Msa0105340:CDS
CATGTAGCTAGATTGCATCA+AGG 0.615345 1_3:+13799770 Msa0105340:CDS
GCAGAGAAATGGCTTTAAGT+GGG 0.628837 1_3:+13799648 Msa0105340:exon
AGCCTCTTTGATGGGAACGT+GGG 0.641629 1_3:+13800856 Msa0105340:CDS
GTGATTGATAAGGAACAAGG+TGG 0.756741 1_3:+13800913 Msa0105340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCCTATTAAAAAAAAATA+CGG - chr1_3:13800058-13800077 None:intergenic 10.0%
!!! AAATTTTGAATATAAGTATT+AGG - chr1_3:13800683-13800702 None:intergenic 10.0%
!! CTTATATTCAAAATTTAATA+TGG + chr1_3:13800687-13800706 Msa0105340:intron 10.0%
!! TTTCCTATTAAAAAAAAATA+CGG - chr1_3:13800058-13800077 None:intergenic 10.0%
!!! AAATTTTGAATATAAGTATT+AGG - chr1_3:13800683-13800702 None:intergenic 10.0%
!! CTTATATTCAAAATTTAATA+TGG + chr1_3:13800687-13800706 Msa0105340:intron 10.0%
!! TATACAATAGGTAATAATTA+AGG + chr1_3:13799830-13799849 Msa0105340:intron 15.0%
!!! AAAAAAAATACGGATTTTAT+CGG - chr1_3:13800048-13800067 None:intergenic 15.0%
!!! AATCCGTATTTTTTTTTAAT+AGG + chr1_3:13800052-13800071 Msa0105340:intron 15.0%
!! ATAAATAAACTCAAAAGTTA+TGG - chr1_3:13800593-13800612 None:intergenic 15.0%
!! TATACAATAGGTAATAATTA+AGG + chr1_3:13799830-13799849 Msa0105340:intron 15.0%
!!! AAAAAAAATACGGATTTTAT+CGG - chr1_3:13800048-13800067 None:intergenic 15.0%
!!! AATCCGTATTTTTTTTTAAT+AGG + chr1_3:13800052-13800071 Msa0105340:intron 15.0%
!! ATAAATAAACTCAAAAGTTA+TGG - chr1_3:13800593-13800612 None:intergenic 15.0%
!! GATGAGAACTATATATATAA+GGG - chr1_3:13799920-13799939 None:intergenic 20.0%
!!! AAAAAAATACGGATTTTATC+GGG - chr1_3:13800047-13800066 None:intergenic 20.0%
!!! ATTTTTTTTTTTTAACCCTC+CGG - chr1_3:13800523-13800542 None:intergenic 20.0%
!! AATAAATACATAGAAACTAG+AGG - chr1_3:13800721-13800740 None:intergenic 20.0%
!! AATATTACAAGTGATTGATA+AGG + chr1_3:13800903-13800922 Msa0105340:CDS 20.0%
!! GATGAGAACTATATATATAA+GGG - chr1_3:13799920-13799939 None:intergenic 20.0%
!!! AAAAAAATACGGATTTTATC+GGG - chr1_3:13800047-13800066 None:intergenic 20.0%
!!! ATTTTTTTTTTTTAACCCTC+CGG - chr1_3:13800523-13800542 None:intergenic 20.0%
!! AATAAATACATAGAAACTAG+AGG - chr1_3:13800721-13800740 None:intergenic 20.0%
!! AATATTACAAGTGATTGATA+AGG + chr1_3:13800903-13800922 Msa0105340:CDS 20.0%
! TGTATGTCATTAGAGATATT+AGG - chr1_3:13799752-13799771 None:intergenic 25.0%
! CATAGATGTAGGATATTTAA+AGG - chr1_3:13799888-13799907 None:intergenic 25.0%
! GGATGAGAACTATATATATA+AGG - chr1_3:13799921-13799940 None:intergenic 25.0%
! CAATAATCACTAAACATCAT+TGG - chr1_3:13799942-13799961 None:intergenic 25.0%
!!! TTTTTTTCTTTGATGTGGTT+CGG - chr1_3:13800146-13800165 None:intergenic 25.0%
! AAAAAAAACAGCAAAAGCTA+AGG + chr1_3:13800159-13800178 Msa0105340:intron 25.0%
!!! ATTATTTTTTTCCTTCTGCA+AGG - chr1_3:13800784-13800803 None:intergenic 25.0%
! TGAGAATTACAAGAGTTTAA+AGG + chr1_3:13800879-13800898 Msa0105340:CDS 25.0%
! GAAAAGTCTAAGTATGAATT+AGG - chr1_3:13801000-13801019 None:intergenic 25.0%
! TGTATGTCATTAGAGATATT+AGG - chr1_3:13799752-13799771 None:intergenic 25.0%
! CATAGATGTAGGATATTTAA+AGG - chr1_3:13799888-13799907 None:intergenic 25.0%
! GGATGAGAACTATATATATA+AGG - chr1_3:13799921-13799940 None:intergenic 25.0%
! CAATAATCACTAAACATCAT+TGG - chr1_3:13799942-13799961 None:intergenic 25.0%
!!! TTTTTTTCTTTGATGTGGTT+CGG - chr1_3:13800146-13800165 None:intergenic 25.0%
! AAAAAAAACAGCAAAAGCTA+AGG + chr1_3:13800159-13800178 Msa0105340:intron 25.0%
!!! ATTATTTTTTTCCTTCTGCA+AGG - chr1_3:13800784-13800803 None:intergenic 25.0%
! TGAGAATTACAAGAGTTTAA+AGG + chr1_3:13800879-13800898 Msa0105340:CDS 25.0%
! GAAAAGTCTAAGTATGAATT+AGG - chr1_3:13801000-13801019 None:intergenic 25.0%
AATATTAGAGAGCAGAGAAA+TGG + chr1_3:13799637-13799656 Msa0105340:exon 30.0%
ACATTATAAAACTTAGCAGC+TGG - chr1_3:13799704-13799723 None:intergenic 30.0%
AAACACTGGGAATATACAAT+AGG + chr1_3:13799818-13799837 Msa0105340:CDS 30.0%
AGATGTAGGATATTTAAAGG+AGG - chr1_3:13799885-13799904 None:intergenic 30.0%
GGATCAAATTACATAGATGT+AGG - chr1_3:13799899-13799918 None:intergenic 30.0%
TCTACAAAGTAGATGTACAA+AGG + chr1_3:13800104-13800123 Msa0105340:intron 30.0%
!!! TTTTTTCTTTGATGTGGTTC+GGG - chr1_3:13800145-13800164 None:intergenic 30.0%
!!! GCTGTTTTTTTTCTTTGATG+TGG - chr1_3:13800151-13800170 None:intergenic 30.0%
AATAATTGTCATCGCAAAAC+AGG + chr1_3:13800636-13800655 Msa0105340:intron 30.0%
ATCAAATATAGCCTCTTTGA+TGG + chr1_3:13800847-13800866 Msa0105340:CDS 30.0%
TCAAATATAGCCTCTTTGAT+GGG + chr1_3:13800848-13800867 Msa0105340:CDS 30.0%
AATTGATGCTCATATTGTCA+TGG + chr1_3:13801038-13801057 Msa0105340:CDS 30.0%
AATATTAGAGAGCAGAGAAA+TGG + chr1_3:13799637-13799656 Msa0105340:exon 30.0%
ACATTATAAAACTTAGCAGC+TGG - chr1_3:13799704-13799723 None:intergenic 30.0%
AAACACTGGGAATATACAAT+AGG + chr1_3:13799818-13799837 Msa0105340:CDS 30.0%
AGATGTAGGATATTTAAAGG+AGG - chr1_3:13799885-13799904 None:intergenic 30.0%
GGATCAAATTACATAGATGT+AGG - chr1_3:13799899-13799918 None:intergenic 30.0%
TCTACAAAGTAGATGTACAA+AGG + chr1_3:13800104-13800123 Msa0105340:intron 30.0%
!!! TTTTTTCTTTGATGTGGTTC+GGG - chr1_3:13800145-13800164 None:intergenic 30.0%
!!! GCTGTTTTTTTTCTTTGATG+TGG - chr1_3:13800151-13800170 None:intergenic 30.0%
AATAATTGTCATCGCAAAAC+AGG + chr1_3:13800636-13800655 Msa0105340:intron 30.0%
ATCAAATATAGCCTCTTTGA+TGG + chr1_3:13800847-13800866 Msa0105340:CDS 30.0%
TCAAATATAGCCTCTTTGAT+GGG + chr1_3:13800848-13800867 Msa0105340:CDS 30.0%
AATTGATGCTCATATTGTCA+TGG + chr1_3:13801038-13801057 Msa0105340:CDS 30.0%
! AAAATACGGATTTTATCGGG+AGG - chr1_3:13800044-13800063 None:intergenic 35.0%
ATGTGGTGTCTTATGATTCT+TGG - chr1_3:13800322-13800341 None:intergenic 35.0%
! ATGTCCTTTTTATGAATGGG+AGG - chr1_3:13800415-13800434 None:intergenic 35.0%
TCCCATTCATAAAAAGGACA+TGG + chr1_3:13800414-13800433 Msa0105340:intron 35.0%
! CCCATGTCCTTTTTATGAAT+GGG - chr1_3:13800418-13800437 None:intergenic 35.0%
CCCATTCATAAAAAGGACAT+GGG + chr1_3:13800415-13800434 Msa0105340:intron 35.0%
TGGAAATGGTTTCTTGGTAA+AGG - chr1_3:13800451-13800470 None:intergenic 35.0%
TAGTAATTCAGAGTTCGATG+TGG - chr1_3:13800480-13800499 None:intergenic 35.0%
ACATCGAACTCTGAATTACT+AGG + chr1_3:13800479-13800498 Msa0105340:intron 35.0%
CATCGAACTCTGAATTACTA+GGG + chr1_3:13800480-13800499 Msa0105340:intron 35.0%
! TTTTAACCCTCCGGTTTTTA+GGG - chr1_3:13800514-13800533 None:intergenic 35.0%
! TTTTTAACCCTCCGGTTTTT+AGG - chr1_3:13800515-13800534 None:intergenic 35.0%
CAAGTGATTGATAAGGAACA+AGG + chr1_3:13800910-13800929 Msa0105340:CDS 35.0%
! AAAATACGGATTTTATCGGG+AGG - chr1_3:13800044-13800063 None:intergenic 35.0%
ATGTGGTGTCTTATGATTCT+TGG - chr1_3:13800322-13800341 None:intergenic 35.0%
! ATGTCCTTTTTATGAATGGG+AGG - chr1_3:13800415-13800434 None:intergenic 35.0%
TCCCATTCATAAAAAGGACA+TGG + chr1_3:13800414-13800433 Msa0105340:intron 35.0%
! CCCATGTCCTTTTTATGAAT+GGG - chr1_3:13800418-13800437 None:intergenic 35.0%
CCCATTCATAAAAAGGACAT+GGG + chr1_3:13800415-13800434 Msa0105340:intron 35.0%
TGGAAATGGTTTCTTGGTAA+AGG - chr1_3:13800451-13800470 None:intergenic 35.0%
TAGTAATTCAGAGTTCGATG+TGG - chr1_3:13800480-13800499 None:intergenic 35.0%
ACATCGAACTCTGAATTACT+AGG + chr1_3:13800479-13800498 Msa0105340:intron 35.0%
CATCGAACTCTGAATTACTA+GGG + chr1_3:13800480-13800499 Msa0105340:intron 35.0%
! TTTTAACCCTCCGGTTTTTA+GGG - chr1_3:13800514-13800533 None:intergenic 35.0%
! TTTTTAACCCTCCGGTTTTT+AGG - chr1_3:13800515-13800534 None:intergenic 35.0%
CAAGTGATTGATAAGGAACA+AGG + chr1_3:13800910-13800929 Msa0105340:CDS 35.0%
!! AGCAGAGAAATGGCTTTAAG+TGG + chr1_3:13799647-13799666 Msa0105340:exon 40.0%
!! GCAGAGAAATGGCTTTAAGT+GGG + chr1_3:13799648-13799667 Msa0105340:exon 40.0%
CATGTAGCTAGATTGCATCA+AGG + chr1_3:13799770-13799789 Msa0105340:CDS 40.0%
TAGATTGCATCAAGGTGACT+GGG + chr1_3:13799778-13799797 Msa0105340:CDS 40.0%
!! ATGTTGGTTCTGTCAAACAC+TGG + chr1_3:13799804-13799823 Msa0105340:CDS 40.0%
!! TGTTGGTTCTGTCAAACACT+GGG + chr1_3:13799805-13799824 Msa0105340:CDS 40.0%
GTGATTATTGAGCTTTCCCT+AGG + chr1_3:13799952-13799971 Msa0105340:intron 40.0%
!! TCATGTGGCTTGGTGTTTAT+GGG - chr1_3:13800231-13800250 None:intergenic 40.0%
ATGACCACAAACCCTAACTA+GGG + chr1_3:13800247-13800266 Msa0105340:intron 40.0%
TGCACCTCCCATTCATAAAA+AGG + chr1_3:13800408-13800427 Msa0105340:intron 40.0%
! GCCCATGTCCTTTTTATGAA+TGG - chr1_3:13800419-13800438 None:intergenic 40.0%
! TGGTCTTGGAAATGGTTTCT+TGG - chr1_3:13800457-13800476 None:intergenic 40.0%
TAATTCAGAGTTCGATGTGG+TGG - chr1_3:13800477-13800496 None:intergenic 40.0%
GTGATTGATAAGGAACAAGG+TGG + chr1_3:13800913-13800932 Msa0105340:CDS 40.0%
ATTGATAAGGAACAAGGTGG+TGG + chr1_3:13800916-13800935 Msa0105340:CDS 40.0%
TTGATAAGGAACAAGGTGGT+GGG + chr1_3:13800917-13800936 Msa0105340:CDS 40.0%
!! AGCAGAGAAATGGCTTTAAG+TGG + chr1_3:13799647-13799666 Msa0105340:exon 40.0%
!! GCAGAGAAATGGCTTTAAGT+GGG + chr1_3:13799648-13799667 Msa0105340:exon 40.0%
CATGTAGCTAGATTGCATCA+AGG + chr1_3:13799770-13799789 Msa0105340:CDS 40.0%
TAGATTGCATCAAGGTGACT+GGG + chr1_3:13799778-13799797 Msa0105340:CDS 40.0%
!! ATGTTGGTTCTGTCAAACAC+TGG + chr1_3:13799804-13799823 Msa0105340:CDS 40.0%
!! TGTTGGTTCTGTCAAACACT+GGG + chr1_3:13799805-13799824 Msa0105340:CDS 40.0%
GTGATTATTGAGCTTTCCCT+AGG + chr1_3:13799952-13799971 Msa0105340:intron 40.0%
!! TCATGTGGCTTGGTGTTTAT+GGG - chr1_3:13800231-13800250 None:intergenic 40.0%
ATGACCACAAACCCTAACTA+GGG + chr1_3:13800247-13800266 Msa0105340:intron 40.0%
TGCACCTCCCATTCATAAAA+AGG + chr1_3:13800408-13800427 Msa0105340:intron 40.0%
! GCCCATGTCCTTTTTATGAA+TGG - chr1_3:13800419-13800438 None:intergenic 40.0%
! TGGTCTTGGAAATGGTTTCT+TGG - chr1_3:13800457-13800476 None:intergenic 40.0%
TAATTCAGAGTTCGATGTGG+TGG - chr1_3:13800477-13800496 None:intergenic 40.0%
GTGATTGATAAGGAACAAGG+TGG + chr1_3:13800913-13800932 Msa0105340:CDS 40.0%
ATTGATAAGGAACAAGGTGG+TGG + chr1_3:13800916-13800935 Msa0105340:CDS 40.0%
TTGATAAGGAACAAGGTGGT+GGG + chr1_3:13800917-13800936 Msa0105340:CDS 40.0%
CTAGATTGCATCAAGGTGAC+TGG + chr1_3:13799777-13799796 Msa0105340:CDS 45.0%
CAAGGTGACTGGGAAAATGT+TGG + chr1_3:13799788-13799807 Msa0105340:CDS 45.0%
CTTTCGAACGATTCGTCCTA+GGG - chr1_3:13799971-13799990 None:intergenic 45.0%
TCTTTCGAACGATTCGTCCT+AGG - chr1_3:13799972-13799991 None:intergenic 45.0%
!! CATGTGGCTTGGTGTTTATG+GGG - chr1_3:13800230-13800249 None:intergenic 45.0%
!! GTCATGTGGCTTGGTGTTTA+TGG - chr1_3:13800232-13800251 None:intergenic 45.0%
AGTTAGGGTTTGTGGTCATG+TGG - chr1_3:13800246-13800265 None:intergenic 45.0%
CATGACCACAAACCCTAACT+AGG + chr1_3:13800246-13800265 Msa0105340:intron 45.0%
AGAGAAAGGCAACTCCAAAG+CGG + chr1_3:13800293-13800312 Msa0105340:intron 45.0%
AAGACACCACATAGACTCGA+TGG + chr1_3:13800330-13800349 Msa0105340:intron 45.0%
AGACACCACATAGACTCGAT+GGG + chr1_3:13800331-13800350 Msa0105340:intron 45.0%
!!! GTATTTTGGCTTCGTGGTCT+AGG - chr1_3:13800358-13800377 None:intergenic 45.0%
AGCCAAAATACCCCATCGAT+CGG + chr1_3:13800367-13800386 Msa0105340:intron 45.0%
ATGTGTTGAACCCGATCGAT+GGG - chr1_3:13800381-13800400 None:intergenic 45.0%
! AAAAAGGACATGGGCTACCA+AGG + chr1_3:13800424-13800443 Msa0105340:intron 45.0%
GGTTTCTTGGTAAAGGACCT+TGG - chr1_3:13800444-13800463 None:intergenic 45.0%
GGTCTCCTTTCCCTAAAAAC+CGG + chr1_3:13800501-13800520 Msa0105340:intron 45.0%
TCCTTTCCCTAAAAACCGGA+GGG + chr1_3:13800505-13800524 Msa0105340:intron 45.0%
TACGTGTGAATCCTTGCAGA+AGG + chr1_3:13800770-13800789 Msa0105340:intron 45.0%
!! AAGGTGGTGGGATTGTGAAA+TGG + chr1_3:13800929-13800948 Msa0105340:CDS 45.0%
CTAGATTGCATCAAGGTGAC+TGG + chr1_3:13799777-13799796 Msa0105340:CDS 45.0%
CAAGGTGACTGGGAAAATGT+TGG + chr1_3:13799788-13799807 Msa0105340:CDS 45.0%
CTTTCGAACGATTCGTCCTA+GGG - chr1_3:13799971-13799990 None:intergenic 45.0%
TCTTTCGAACGATTCGTCCT+AGG - chr1_3:13799972-13799991 None:intergenic 45.0%
!! CATGTGGCTTGGTGTTTATG+GGG - chr1_3:13800230-13800249 None:intergenic 45.0%
!! GTCATGTGGCTTGGTGTTTA+TGG - chr1_3:13800232-13800251 None:intergenic 45.0%
AGTTAGGGTTTGTGGTCATG+TGG - chr1_3:13800246-13800265 None:intergenic 45.0%
CATGACCACAAACCCTAACT+AGG + chr1_3:13800246-13800265 Msa0105340:intron 45.0%
AGAGAAAGGCAACTCCAAAG+CGG + chr1_3:13800293-13800312 Msa0105340:intron 45.0%
AAGACACCACATAGACTCGA+TGG + chr1_3:13800330-13800349 Msa0105340:intron 45.0%
AGACACCACATAGACTCGAT+GGG + chr1_3:13800331-13800350 Msa0105340:intron 45.0%
!!! GTATTTTGGCTTCGTGGTCT+AGG - chr1_3:13800358-13800377 None:intergenic 45.0%
AGCCAAAATACCCCATCGAT+CGG + chr1_3:13800367-13800386 Msa0105340:intron 45.0%
ATGTGTTGAACCCGATCGAT+GGG - chr1_3:13800381-13800400 None:intergenic 45.0%
! AAAAAGGACATGGGCTACCA+AGG + chr1_3:13800424-13800443 Msa0105340:intron 45.0%
GGTTTCTTGGTAAAGGACCT+TGG - chr1_3:13800444-13800463 None:intergenic 45.0%
GGTCTCCTTTCCCTAAAAAC+CGG + chr1_3:13800501-13800520 Msa0105340:intron 45.0%
TCCTTTCCCTAAAAACCGGA+GGG + chr1_3:13800505-13800524 Msa0105340:intron 45.0%
TACGTGTGAATCCTTGCAGA+AGG + chr1_3:13800770-13800789 Msa0105340:intron 45.0%
!! AAGGTGGTGGGATTGTGAAA+TGG + chr1_3:13800929-13800948 Msa0105340:CDS 45.0%
! TGCAGAGGTAAGGTGGCTTT+TGG - chr1_3:13800194-13800213 None:intergenic 50.0%
AAGCCACCTTACCTCTGCAA+AGG + chr1_3:13800195-13800214 Msa0105340:intron 50.0%
TGGTCCCTAGTTAGGGTTTG+TGG - chr1_3:13800254-13800273 None:intergenic 50.0%
! AGTAGGCTGGTCCCTAGTTA+GGG - chr1_3:13800261-13800280 None:intergenic 50.0%
TAGGTCCCATCGAGTCTATG+TGG - chr1_3:13800339-13800358 None:intergenic 50.0%
!!! GATGGGGTATTTTGGCTTCG+TGG - chr1_3:13800364-13800383 None:intergenic 50.0%
GCCAAAATACCCCATCGATC+GGG + chr1_3:13800368-13800387 Msa0105340:intron 50.0%
!! ACCCGATCGATGGGGTATTT+TGG - chr1_3:13800372-13800391 None:intergenic 50.0%
TGTGTTGAACCCGATCGATG+GGG - chr1_3:13800380-13800399 None:intergenic 50.0%
CATGTGTTGAACCCGATCGA+TGG - chr1_3:13800382-13800401 None:intergenic 50.0%
GATCGGGTTCAACACATGAC+TGG + chr1_3:13800384-13800403 Msa0105340:intron 50.0%
! CGATGTGGTGGTCTTGGAAA+TGG - chr1_3:13800465-13800484 None:intergenic 50.0%
AGAGTTCGATGTGGTGGTCT+TGG - chr1_3:13800471-13800490 None:intergenic 50.0%
CTCCTTTCCCTAAAAACCGG+AGG + chr1_3:13800504-13800523 Msa0105340:intron 50.0%
!! ACCCTCCGGTTTTTAGGGAA+AGG - chr1_3:13800509-13800528 None:intergenic 50.0%
TAGCCTCTTTGATGGGAACG+TGG + chr1_3:13800855-13800874 Msa0105340:CDS 50.0%
AGCCTCTTTGATGGGAACGT+GGG + chr1_3:13800856-13800875 Msa0105340:CDS 50.0%
! TGCAGAGGTAAGGTGGCTTT+TGG - chr1_3:13800194-13800213 None:intergenic 50.0%
AAGCCACCTTACCTCTGCAA+AGG + chr1_3:13800195-13800214 Msa0105340:intron 50.0%
TGGTCCCTAGTTAGGGTTTG+TGG - chr1_3:13800254-13800273 None:intergenic 50.0%
! AGTAGGCTGGTCCCTAGTTA+GGG - chr1_3:13800261-13800280 None:intergenic 50.0%
TAGGTCCCATCGAGTCTATG+TGG - chr1_3:13800339-13800358 None:intergenic 50.0%
!!! GATGGGGTATTTTGGCTTCG+TGG - chr1_3:13800364-13800383 None:intergenic 50.0%
GCCAAAATACCCCATCGATC+GGG + chr1_3:13800368-13800387 Msa0105340:intron 50.0%
!! ACCCGATCGATGGGGTATTT+TGG - chr1_3:13800372-13800391 None:intergenic 50.0%
TGTGTTGAACCCGATCGATG+GGG - chr1_3:13800380-13800399 None:intergenic 50.0%
CATGTGTTGAACCCGATCGA+TGG - chr1_3:13800382-13800401 None:intergenic 50.0%
GATCGGGTTCAACACATGAC+TGG + chr1_3:13800384-13800403 Msa0105340:intron 50.0%
! CGATGTGGTGGTCTTGGAAA+TGG - chr1_3:13800465-13800484 None:intergenic 50.0%
AGAGTTCGATGTGGTGGTCT+TGG - chr1_3:13800471-13800490 None:intergenic 50.0%
CTCCTTTCCCTAAAAACCGG+AGG + chr1_3:13800504-13800523 Msa0105340:intron 50.0%
!! ACCCTCCGGTTTTTAGGGAA+AGG - chr1_3:13800509-13800528 None:intergenic 50.0%
TAGCCTCTTTGATGGGAACG+TGG + chr1_3:13800855-13800874 Msa0105340:CDS 50.0%
AGCCTCTTTGATGGGAACGT+GGG + chr1_3:13800856-13800875 Msa0105340:CDS 50.0%
CCACCTTACCTCTGCAAAGG+CGG + chr1_3:13800198-13800217 Msa0105340:intron 55.0%
TCTCCGCCTTTGCAGAGGTA+AGG - chr1_3:13800204-13800223 None:intergenic 55.0%
GGGTTTGTGGTCATGTGGCT+TGG - chr1_3:13800241-13800260 None:intergenic 55.0%
! CAGTAGGCTGGTCCCTAGTT+AGG - chr1_3:13800262-13800281 None:intergenic 55.0%
ACTAGGGACCAGCCTACTGA+AGG + chr1_3:13800263-13800282 Msa0105340:intron 55.0%
TCTCTCTTCCCGCCTTCAGT+AGG - chr1_3:13800278-13800297 None:intergenic 55.0%
CTGAAGGCGGGAAGAGAGAA+AGG + chr1_3:13800279-13800298 Msa0105340:intron 55.0%
GAAAGGCAACTCCAAAGCGG+CGG + chr1_3:13800296-13800315 Msa0105340:intron 55.0%
ATGATTCTTGGCCGCCGCTT+TGG - chr1_3:13800310-13800329 None:intergenic 55.0%
CACCCACGTTCCCATCAAAG+AGG - chr1_3:13800861-13800880 None:intergenic 55.0%
CCACCTTACCTCTGCAAAGG+CGG + chr1_3:13800198-13800217 Msa0105340:intron 55.0%
TCTCCGCCTTTGCAGAGGTA+AGG - chr1_3:13800204-13800223 None:intergenic 55.0%
GGGTTTGTGGTCATGTGGCT+TGG - chr1_3:13800241-13800260 None:intergenic 55.0%
! CAGTAGGCTGGTCCCTAGTT+AGG - chr1_3:13800262-13800281 None:intergenic 55.0%
ACTAGGGACCAGCCTACTGA+AGG + chr1_3:13800263-13800282 Msa0105340:intron 55.0%
TCTCTCTTCCCGCCTTCAGT+AGG - chr1_3:13800278-13800297 None:intergenic 55.0%
CTGAAGGCGGGAAGAGAGAA+AGG + chr1_3:13800279-13800298 Msa0105340:intron 55.0%
GAAAGGCAACTCCAAAGCGG+CGG + chr1_3:13800296-13800315 Msa0105340:intron 55.0%
ATGATTCTTGGCCGCCGCTT+TGG - chr1_3:13800310-13800329 None:intergenic 55.0%
CACCCACGTTCCCATCAAAG+AGG - chr1_3:13800861-13800880 None:intergenic 55.0%
CCGCCTTTGCAGAGGTAAGG+TGG - chr1_3:13800201-13800220 None:intergenic 60.0%
GGTGTTCTCCGCCTTTGCAG+AGG - chr1_3:13800209-13800228 None:intergenic 60.0%
AGGGACCAGCCTACTGAAGG+CGG + chr1_3:13800266-13800285 Msa0105340:intron 60.0%
TCTTCCCGCCTTCAGTAGGC+TGG - chr1_3:13800274-13800293 None:intergenic 60.0%
CCGCCTTTGCAGAGGTAAGG+TGG - chr1_3:13800201-13800220 None:intergenic 60.0%
GGTGTTCTCCGCCTTTGCAG+AGG - chr1_3:13800209-13800228 None:intergenic 60.0%
AGGGACCAGCCTACTGAAGG+CGG + chr1_3:13800266-13800285 Msa0105340:intron 60.0%
TCTTCCCGCCTTCAGTAGGC+TGG - chr1_3:13800274-13800293 None:intergenic 60.0%
GGGACCAGCCTACTGAAGGC+GGG + chr1_3:13800267-13800286 Msa0105340:intron 65.0%
GGGACCAGCCTACTGAAGGC+GGG + chr1_3:13800267-13800286 Msa0105340:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 13799624 13801065 13799624 ID=Msa0105340;Name=Msa0105340
chr1_3 mRNA 13799624 13801065 13799624 ID=Msa0105340-mRNA-1;Parent=Msa0105340;Name=Msa0105340-mRNA-1;_AED=0.22;_eAED=0.22;_QI=32|0|0.5|1|1|1|2|0|139
chr1_3 exon 13799624 13799839 13799624 ID=Msa0105340-mRNA-1:exon:5452;Parent=Msa0105340-mRNA-1
chr1_3 exon 13800830 13801065 13800830 ID=Msa0105340-mRNA-1:exon:5453;Parent=Msa0105340-mRNA-1
chr1_3 five_prime_UTR 13799624 13799655 13799624 ID=Msa0105340-mRNA-1:five_prime_utr;Parent=Msa0105340-mRNA-1
chr1_3 CDS 13799656 13799839 13799656 ID=Msa0105340-mRNA-1:cds;Parent=Msa0105340-mRNA-1
chr1_3 CDS 13800830 13801065 13800830 ID=Msa0105340-mRNA-1:cds;Parent=Msa0105340-mRNA-1
Gene Sequence

>Msa0105340

ATGGCTTTAAGTGGGAAAGTGTTCACTGAAATAGAGATTCAAGCACCAGCTGCTAAGTTTTATAATGTTTGCAAGAAGCAACTTCAACAACTTCCTAATATCTCTAATGACATACATGTAGCTAGATTGCATCAAGGTGACTGGGAAAATGTTGGTTCTGTCAAACACTGGGAATATACAATAGATGATGACAATAAGATAATCAAATATAGCCTCTTTGATGGGAACGTGGGTGAGAATTACAAGAGTTTAAAGGCAATATTACAAGTGATTGATAAGGAACAAGGTGGTGGGATTGTGAAATGGACTTTTGAATATGAAAAGTTAAAGCAAGATATTACAATTGCATCTCCTAATTCATACTTAGACTTTTCTGCAAAGATCACAAAAGAAATTGATGCTCATATTGTCATGGAATAG

Protein sequence

>Msa0105340

MALSGKVFTEIEIQAPAAKFYNVCKKQLQQLPNISNDIHVARLHQGDWENVGSVKHWEYTIDDDNKIIKYSLFDGNVGENYKSLKAILQVIDKEQGGGIVKWTFEYEKLKQDITIASPNSYLDFSAKITKEIDAHIVME*