AlfalfaGEDB | Msa0191670

M. sativa cultivar zhongmu-4 / Msa0191670

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0191670	XP_003593486.1	97.616	713	17	0	1	713	1	713	0.0	1429

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0191670	sp\|Q6R2K3\|SRF3_ARATH	50.667	750	301	11	20	710	21	760	0.0	649

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0191670	G7INX5	97.616	713	17	0	1	713	1	713	0.0	1429

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0191570	Msa0191670	0.832954	7.036955e-56	-8.615850e-47
Msa0191670	Msa0191720	0.946792	2.345229e-105	-8.615850e-47
Msa0191670	Msa0233650	0.912790	1.300103e-83	-8.615850e-47
Msa0191670	Msa0382770	0.805766	1.139193e-49	-8.615850e-47
Msa0191670	Msa0432030	0.828509	8.644230e-55	-8.615850e-47
Msa0191670	Msa0541300	0.800537	1.375609e-48	-8.615850e-47
Msa0191670	Msa0687090	0.800039	1.737528e-48	-8.615850e-47
Msa0191670	Msa1078820	0.818920	1.523450e-52	-8.615850e-47
Msa0191670	Msa1123970	0.818306	2.100166e-52	-8.615850e-47
Msa0191670	Msa1169650	0.816650	4.956194e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0191670	MtrunA17_Chr2g0281501	97.616	713	17	0	1	713	1	713	0.0	1429
Msa0191670	MtrunA17_Chr4g0022431	46.981	828	302	20	12	713	15	831	0.0	647
Msa0191670	MtrunA17_Chr2g0323941	47.906	764	330	10	4	710	13	765	0.0	646
Msa0191670	MtrunA17_Chr2g0289161	58.176	318	122	3	404	710	379	696	1.41e-118	372
Msa0191670	MtrunA17_Chr2g0289161	42.800	250	113	6	27	250	38	283	1.03e-39	156
Msa0191670	MtrunA17_Chr8g0345471	53.061	294	134	3	418	710	394	684	7.57e-100	322
Msa0191670	MtrunA17_Chr4g0000081	50.859	291	130	4	423	710	395	675	1.06e-88	292
Msa0191670	MtrunA17_Chr4g0000081	40.260	231	112	3	17	221	12	242	4.80e-43	166
Msa0191670	MtrunA17_Chr1g0174841	43.478	345	168	6	389	713	31	368	2.19e-86	278
Msa0191670	MtrunA17_Chr2g0320111	41.060	302	170	3	415	710	72	371	4.06e-75	248

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0191670	AT4G03390.2	50.667	750	301	11	20	710	21	760	0.0	649
Msa0191670	AT4G03390.1	50.667	750	301	11	20	710	21	760	0.0	649
Msa0191670	AT2G20850.1	48.880	759	298	13	16	709	19	752	0.0	622
Msa0191670	AT1G11130.1	43.333	780	339	15	11	709	7	764	0.0	566
Msa0191670	AT1G11130.2	43.362	708	298	15	83	709	1	686	1.36e-170	506
Msa0191670	AT4G22130.1	42.720	728	314	16	18	710	11	670	4.63e-169	502
Msa0191670	AT1G53730.1	41.326	709	329	16	30	704	27	682	1.58e-158	476
Msa0191670	AT1G53730.2	41.408	710	328	17	30	704	27	683	4.58e-157	472
Msa0191670	AT4G22130.2	44.113	603	250	11	119	710	3	529	4.79e-146	438
Msa0191670	AT2G20850.2	44.204	647	271	13	16	597	19	640	2.47e-145	439

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Find 207 sgRNAs with CRISPR-Local

Find 376 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGTGTCATCACGTGT+AGG	0.622897	2_1:+7290212	None:intergenic
AAAATAACAGAACAAGACAA+AGG	0.668930	2_1:+7293490	None:intergenic
AAACATGGATCCCCTCCTAC+AGG	0.504257	2_1:+7292864	None:intergenic
AAAGACTTCTTAACATTTCC+AGG	0.271086	2_1:+7290392	None:intergenic
AAAGTTGTGGGAACAAAACT+AGG	0.498067	2_1:+7288264	None:intergenic
AAATCCTCAGAAGCTTGATG+TGG	0.619773	2_1:-7290261	Msa0191670:CDS
AAATTTCGATGCACAATAGG+CGG	0.638985	2_1:+7289240	None:intergenic
AACAAAACTAGGCTAAGGTA+AGG	0.564396	2_1:+7288275	None:intergenic
AACACTGTATTAAATTTCCA+TGG	0.491107	2_1:-7289419	Msa0191670:CDS
AAGAACAAATTCGATTCCAA+AGG	0.566424	2_1:-7290026	Msa0191670:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTAACACTATCTATGTACTT+TGG	-	chr2_1:7287927-7287946	Msa0191670:three_prime_UTR	30.0%
GAAAGAATGGAAGTTTGAAT+AGG	+	chr2_1:7288043-7288062	None:intergenic	30.0%
TTGATTGTGTATAGTTGTTG+TGG	-	chr2_1:7288238-7288257	Msa0191670:three_prime_UTR	30.0%
TGATTGTGTATAGTTGTTGT+GGG	-	chr2_1:7288239-7288258	Msa0191670:three_prime_UTR	30.0%
TGTATAGTATACCATCAACA+GGG	+	chr2_1:7288390-7288409	None:intergenic	30.0%
CACTGCAAAAATTCAAATAC+TGG	+	chr2_1:7288535-7288554	None:intergenic	30.0%
ATCAAAGAATCCATTATACC+TGG	+	chr2_1:7288559-7288578	None:intergenic	30.0%
ATAATTAAAGAGAGGGAGAA+TGG	+	chr2_1:7288903-7288922	None:intergenic	30.0%
TGTACCATAACCTTGAAAAT+TGG	+	chr2_1:7289115-7289134	None:intergenic	30.0%
ATTGTCTGTCATAATCACTA+TGG	-	chr2_1:7289170-7289189	Msa0191670:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	7287883	7293826	7287883	ID=Msa0191670;Name=Msa0191670
chr2_1	mRNA	7287883	7293826	7287883	ID=Msa0191670-mRNA-1;Parent=Msa0191670;Name=Msa0191670-mRNA-1;_AED=0.10;_eAED=0.10;_QI=412\|1\|1\|1\|1\|1\|15\|443\|713
chr2_1	exon	7287883	7288388	7287883	ID=Msa0191670-mRNA-1:exon:3404;Parent=Msa0191670-mRNA-1
chr2_1	exon	7288478	7288634	7288478	ID=Msa0191670-mRNA-1:exon:3403;Parent=Msa0191670-mRNA-1
chr2_1	exon	7288748	7288884	7288748	ID=Msa0191670-mRNA-1:exon:3402;Parent=Msa0191670-mRNA-1
chr2_1	exon	7289146	7289284	7289146	ID=Msa0191670-mRNA-1:exon:3401;Parent=Msa0191670-mRNA-1
chr2_1	exon	7289375	7289646	7289375	ID=Msa0191670-mRNA-1:exon:3400;Parent=Msa0191670-mRNA-1
chr2_1	exon	7289727	7290085	7289727	ID=Msa0191670-mRNA-1:exon:3399;Parent=Msa0191670-mRNA-1
chr2_1	exon	7290186	7290556	7290186	ID=Msa0191670-mRNA-1:exon:3398;Parent=Msa0191670-mRNA-1
chr2_1	exon	7291039	7291104	7291039	ID=Msa0191670-mRNA-1:exon:3397;Parent=Msa0191670-mRNA-1
chr2_1	exon	7291231	7291296	7291231	ID=Msa0191670-mRNA-1:exon:3396;Parent=Msa0191670-mRNA-1
chr2_1	exon	7291393	7291464	7291393	ID=Msa0191670-mRNA-1:exon:3395;Parent=Msa0191670-mRNA-1
chr2_1	exon	7291755	7291826	7291755	ID=Msa0191670-mRNA-1:exon:3394;Parent=Msa0191670-mRNA-1
chr2_1	exon	7291933	7291998	7291933	ID=Msa0191670-mRNA-1:exon:3393;Parent=Msa0191670-mRNA-1
chr2_1	exon	7292607	7292675	7292607	ID=Msa0191670-mRNA-1:exon:3392;Parent=Msa0191670-mRNA-1
chr2_1	exon	7292816	7292945	7292816	ID=Msa0191670-mRNA-1:exon:3391;Parent=Msa0191670-mRNA-1
chr2_1	exon	7293312	7293826	7293312	ID=Msa0191670-mRNA-1:exon:3390;Parent=Msa0191670-mRNA-1
chr2_1	five_prime_UTR	7293415	7293826	7293415	ID=Msa0191670-mRNA-1:five_prime_utr;Parent=Msa0191670-mRNA-1
chr2_1	CDS	7293312	7293414	7293312	ID=Msa0191670-mRNA-1:cds;Parent=Msa0191670-mRNA-1
chr2_1	CDS	7292816	7292945	7292816	ID=Msa0191670-mRNA-1:cds;Parent=Msa0191670-mRNA-1
chr2_1	CDS	7292607	7292675	7292607	ID=Msa0191670-mRNA-1:cds;Parent=Msa0191670-mRNA-1
chr2_1	CDS	7291933	7291998	7291933	ID=Msa0191670-mRNA-1:cds;Parent=Msa0191670-mRNA-1
chr2_1	CDS	7291755	7291826	7291755	ID=Msa0191670-mRNA-1:cds;Parent=Msa0191670-mRNA-1
chr2_1	CDS	7291393	7291464	7291393	ID=Msa0191670-mRNA-1:cds;Parent=Msa0191670-mRNA-1
chr2_1	CDS	7291231	7291296	7291231	ID=Msa0191670-mRNA-1:cds;Parent=Msa0191670-mRNA-1
chr2_1	CDS	7291039	7291104	7291039	ID=Msa0191670-mRNA-1:cds;Parent=Msa0191670-mRNA-1
chr2_1	CDS	7290186	7290556	7290186	ID=Msa0191670-mRNA-1:cds;Parent=Msa0191670-mRNA-1
chr2_1	CDS	7289727	7290085	7289727	ID=Msa0191670-mRNA-1:cds;Parent=Msa0191670-mRNA-1
chr2_1	CDS	7289375	7289646	7289375	ID=Msa0191670-mRNA-1:cds;Parent=Msa0191670-mRNA-1
chr2_1	CDS	7289146	7289284	7289146	ID=Msa0191670-mRNA-1:cds;Parent=Msa0191670-mRNA-1
chr2_1	CDS	7288748	7288884	7288748	ID=Msa0191670-mRNA-1:cds;Parent=Msa0191670-mRNA-1
chr2_1	CDS	7288478	7288634	7288478	ID=Msa0191670-mRNA-1:cds;Parent=Msa0191670-mRNA-1
chr2_1	CDS	7288326	7288388	7288326	ID=Msa0191670-mRNA-1:cds;Parent=Msa0191670-mRNA-1
chr2_1	three_prime_UTR	7287883	7288325	7287883	ID=Msa0191670-mRNA-1:three_prime_utr;Parent=Msa0191670-mRNA-1

Gene Sequence

>Msa0191670

ATGGGGTTTTTGAATTTGGGGTTGCATGTGCAAATCTTCGTCACTTCCATGATCCTGATTCTAATGGCGGCTTCCTGTGTTGCAGACACTGACCCTGTTGATGTTGCAGCTATCAATAGTCTATATGTTGCTATGAACTCACCACCTCTTCAAGGGTGGAAGCCTGTAGGAGGGGATCCATGTTTAGAACTTTGGCAAGGTGTGGACTGTGTCTTCACCAACATAACTGCCATACGACTAGGAGGCTTGAATCTGGGTGGAGAGCTTGGCAGTAATTTGGATTTTCCATCAATTATAGACATTGATCTTAGCAACAACCACATTGGAGGAGCCATTCCATTCACTTTACCCCCTACGCTGAGGACCTTGTCTCTGTCAGGAAATAAGTTAAACGGAAGTATTCCAGATGCCTTATCCCTATTGACTCAATTGTCAAATTTGGATTTGGCCAATAACAACCTGACCGGTCAGCTGCCTTCCTCAATGGGGAGTTTATCATCTCTTACGACATTACTGTTGCAGAACAATCAACTTGTAGGGACACTTTTTGTTTTGCAGGGCCTTCCTCTTCAGGATTTGAATATAGAGAATAATTTGTTCTCCGGGCCGATTCCTCCTAATTTGTTGAGCATCCCTAATTTCAGTAAAAATGGGAATCCGTTCAATACTACTATTATTCCATCTCCGCCTGTTGCTGCAGCCCCTTCGCCTGTAGCTATCGGTCGATCCCCTGAAGAATCACCTTGGCATGTGGCATATAGTCCTGCTGACTTCACAGCATCCATGCCTGGAAATGTTAAGAAGTCTTTCCTAGCTGAGCATGTCATTTGGATTGCCGGTGCCGGTTTATTAATTTTTATCGCTTTGGGAATTTGTCTTTTAATGGTATGGTGCTGTAAGAGAAAGCCAAAAAATAAAAATCCTCAGAAGCTTGATGTGGAGGCTTTTCCAAAAACTTTGCATAAACCTACACGTGATGACACTGTTTTCGAAACTACTAATCAAGATGGAAAAGCTGAGAAAACATATCGTTTAAATGAAGTGCCAAATAGAAGAACAAATTCGATTCCAAAGGTTCCAGATCAACAAGAAGTATATGTCAACAAAGTATCTGCGACTTCAGAATACAATAATGTTTCCAAACCTTCACTCCTGCAACCACCACCACATTCTCTGCCGAGCATTTCTGGTGAGAAGGTCATTGTCAATCCAGCTGCAACTAGCAAAGCAACTGAAAGACAAGTTATGACAGGTTCGGTCAAAATATATACTGTCGCATCACTTCAGCAATATACAAATAGCTTTTCCCAAGAAAATCTTATCGGGGAAGGCACTCTTGGATCCGTTTATAGAGCTGAGCTCCCTGATGGAAAGATGTTGGCAGTGAAGAAGCTGGATGCTACCGCATTCAAGGACCAGAATGACGAACAGTTTCTTCAATTGGTATCCAGTATCTCGAAAATTAAGCACGCCAATATTGCAAAACTTGTCGGTTACTGTGCTGAGTATAACCAACGATTACTTGTATATGAGTATTGTAATAATGGAACACTACATGATGCACTTCAAGGAGACGATGAACACTGTATTAAATTTCCATGGAATGTACGCATTAAGGTCGCACTTGGAGCTGCAAGGGCTTTAGAGTATCTGCATGAGAATTTTCGGCCGCCTATTGTGCATCGAAATTTTAGATCCGCTAATGTTCTCCTGAATGAAAAGTTCGAAGTACGTGTCTCTGATTGTGGATTAGGTCATTTGCTATCTTCTGGCACTGCTGGTCAGTTATCTGGACGCCTCCTCACAGCTTACGGTTACAGTGCTCCAGAATTTGAGTCGGGAAGCTATACACAGCAAAGTGATGTCTTCAGTTTTGGAGTTGTAATGCTAGAACTCCTCACAGGAAGAAAATCCTACGACAGGTCACGGCCTCGTGCAGAGCAGTTTTTGGTCAGATGGGCAATACCTCAACTCCATGACATTGATGCCTTGTCGAAAATGGTTGATCCCCGCTTAAATGGATCCTATTCTATGAAATCCTTGTCACGGTTTGCAGATATTGTTTCTTCATGTATTCAGCGTGAACCCGAATTCCGGCCAGCTATGTCTGAAATAGTTCAGGATCTCTTGCTAACGATGTAA

Protein sequence

>Msa0191670

MGFLNLGLHVQIFVTSMILILMAASCVADTDPVDVAAINSLYVAMNSPPLQGWKPVGGDPCLELWQGVDCVFTNITAIRLGGLNLGGELGSNLDFPSIIDIDLSNNHIGGAIPFTLPPTLRTLSLSGNKLNGSIPDALSLLTQLSNLDLANNNLTGQLPSSMGSLSSLTTLLLQNNQLVGTLFVLQGLPLQDLNIENNLFSGPIPPNLLSIPNFSKNGNPFNTTIIPSPPVAAAPSPVAIGRSPEESPWHVAYSPADFTASMPGNVKKSFLAEHVIWIAGAGLLIFIALGICLLMVWCCKRKPKNKNPQKLDVEAFPKTLHKPTRDDTVFETTNQDGKAEKTYRLNEVPNRRTNSIPKVPDQQEVYVNKVSATSEYNNVSKPSLLQPPPHSLPSISGEKVIVNPAATSKATERQVMTGSVKIYTVASLQQYTNSFSQENLIGEGTLGSVYRAELPDGKMLAVKKLDATAFKDQNDEQFLQLVSSISKIKHANIAKLVGYCAEYNQRLLVYEYCNNGTLHDALQGDDEHCIKFPWNVRIKVALGAARALEYLHENFRPPIVHRNFRSANVLLNEKFEVRVSDCGLGHLLSSGTAGQLSGRLLTAYGYSAPEFESGSYTQQSDVFSFGVVMLELLTGRKSYDRSRPRAEQFLVRWAIPQLHDIDALSKMVDPRLNGSYSMKSLSRFADIVSSCIQREPEFRPAMSEIVQDLLLTM*