AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0191570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0191570 MtrunA17_Chr2g0281341 99.808 520 1 0 64 583 1 520 0.0 1051
Msa0191570 MtrunA17_Chr5g0406351 56.357 527 202 5 74 583 19 534 0.0 602
Msa0191570 MtrunA17_Chr5g0406331 57.654 503 195 3 88 583 21 512 0.0 597
Msa0191570 MtrunA17_Chr3g0143701 54.111 523 223 7 64 582 1 510 0.0 565
Msa0191570 MtrunA17_Chr4g0038711 50.339 443 213 3 147 582 59 501 1.06e-162 473
Msa0191570 MtrunA17_Chr6g0458931 39.583 432 249 6 150 580 34 454 3.53e-101 314
Msa0191570 MtrunA17_Chr2g0331721 38.903 401 234 5 150 549 39 429 5.77e-99 308
Msa0191570 MtrunA17_Chr8g0376991 36.175 434 261 6 150 580 15 435 1.81e-92 291
Msa0191570 MtrunA17_Chr7g0230011 37.358 439 263 5 143 580 15 442 3.58e-91 288
Msa0191570 MtrunA17_Chr1g0198531 38.372 430 248 7 157 580 18 436 3.79e-91 287
Msa0191570 MtrunA17_Chr6g0459021 36.574 432 262 5 150 580 26 446 1.29e-90 286
Msa0191570 MtrunA17_Chr5g0422741 37.875 433 257 5 149 580 17 438 2.24e-90 285
Msa0191570 MtrunA17_Chr1g0198541 37.264 424 254 5 158 580 24 436 4.76e-90 285
Msa0191570 MtrunA17_Chr3g0122921 35.321 436 254 5 145 580 20 427 1.63e-88 280
Msa0191570 MtrunA17_Chr4g0057851 33.962 424 268 4 157 579 9 421 2.15e-87 277
Msa0191570 MtrunA17_Chr6g0458921 37.327 434 259 7 149 580 5 427 1.26e-86 275
Msa0191570 MtrunA17_Chr6g0459031 36.866 434 261 7 149 580 5 427 2.31e-85 272
Msa0191570 MtrunA17_Chr6g0459001 35.332 467 261 7 150 580 14 475 6.03e-82 265
Msa0191570 MtrunA17_Chr2g0328081 36.364 429 260 7 154 580 10 427 1.09e-78 254
Msa0191570 MtrunA17_Chr6g0459011 37.157 401 240 5 175 574 2 391 2.04e-78 253
Msa0191570 MtrunA17_Chr3g0077651 34.247 438 268 8 150 580 44 468 1.24e-71 237
Msa0191570 MtrunA17_Chr8g0387941 27.056 462 299 14 138 581 7 448 7.93e-34 134
Msa0191570 MtrunA17_Chr4g0027241 24.887 442 283 13 139 566 32 438 2.80e-25 109
Msa0191570 MtrunA17_Chr3g0125101 25.435 460 290 16 158 582 34 475 7.04e-23 102
Msa0191570 MtrunA17_Chr3g0125081 25.054 459 292 15 158 582 34 474 3.68e-22 100
Msa0191570 MtrunA17_Chr1g0198081 24.835 455 305 14 140 578 40 473 4.76e-22 99.8
Msa0191570 MtrunA17_Chr1g0184721 26.942 412 269 15 182 581 47 438 2.44e-21 97.1
Msa0191570 MtrunA17_Chr3g0130641 25.052 483 289 18 144 582 19 472 8.28e-21 95.9
Msa0191570 MtrunA17_Chr3g0125091 24.078 461 295 17 158 582 34 475 1.80e-20 94.7
Msa0191570 MtrunA17_Chr3g0140761 23.210 461 307 14 158 583 33 481 6.75e-20 93.2
Msa0191570 MtrunA17_Chr1g0146391 24.307 469 282 14 158 580 12 453 1.02e-18 89.4
Msa0191570 MtrunA17_Chr1g0146491 24.353 464 293 17 158 582 23 467 1.91e-18 88.6
Msa0191570 MtrunA17_Chr3g0103231 23.261 417 281 10 158 545 23 429 1.07e-17 86.3
Msa0191570 MtrunA17_Chr4g0058161 24.691 405 264 14 189 580 71 447 3.76e-17 84.3
Msa0191570 MtrunA17_Chr3g0103271 22.148 447 299 12 159 569 28 461 6.46e-17 83.6
Msa0191570 MtrunA17_Chr3g0140541 24.045 445 287 13 158 567 25 453 3.20e-16 81.6
Msa0191570 MtrunA17_Chr3g0140531 22.976 457 305 13 158 580 24 467 1.10e-15 79.7
Msa0191570 MtrunA17_Chr3g0130651 22.779 439 277 15 144 545 16 429 2.45e-15 79.0
Msa0191570 MtrunA17_Chr5g0447231 23.620 453 294 16 159 575 26 462 9.65e-15 77.0
Msa0191570 MtrunA17_Chr8g0384661 22.296 453 309 12 159 582 51 489 1.63e-14 76.3
Msa0191570 MtrunA17_Chr1g0159761 24.292 424 271 16 158 545 27 436 7.05e-14 74.3
Msa0191570 MtrunA17_Chr1g0146331 22.826 460 301 14 158 580 20 462 1.56e-13 73.2
Msa0191570 MtrunA17_Chr5g0447221 23.223 422 273 14 159 545 30 435 1.74e-13 72.8
Msa0191570 MtrunA17_Chr1g0146411 23.282 451 306 13 158 581 33 470 2.37e-13 72.4
Msa0191570 MtrunA17_Chr3g0103221 21.903 452 310 12 158 578 30 469 2.38e-13 72.4
Msa0191570 MtrunA17_Chr2g0293331 22.366 465 296 18 158 580 12 453 3.03e-13 72.0
Msa0191570 MtrunA17_Chr3g0103211 24.641 418 255 15 158 555 23 400 5.87e-12 68.2
Msa0191570 MtrunA17_Chr1g0206851 22.922 397 236 15 221 583 20 380 6.65e-12 67.4
Msa0191570 MtrunA17_Chr1g0206831 23.127 307 198 11 292 573 40 333 9.52e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0191570 AT1G47670.1 89.210 519 54 1 64 582 1 517 0.0 920
Msa0191570 AT4G35180.1 44.419 439 233 4 148 582 47 478 2.35e-128 385
Msa0191570 AT1G24400.1 37.757 437 260 5 145 580 15 440 4.62e-97 303
Msa0191570 AT5G40780.1 37.731 432 257 5 150 580 25 445 5.23e-95 298
Msa0191570 AT1G61270.1 38.588 425 249 6 150 572 25 439 2.20e-93 294
Msa0191570 AT1G48640.1 37.838 444 264 5 138 580 20 452 8.48e-93 293
Msa0191570 AT1G67640.1 37.215 438 263 5 144 580 14 440 2.41e-90 286
Msa0191570 AT1G25530.1 37.500 440 259 6 144 580 13 439 2.96e-88 280
Msa0191570 AT3G01760.1 36.795 443 265 7 136 573 7 439 1.08e-87 279
Msa0191570 AT4G35180.2 47.670 279 136 3 148 423 47 318 9.05e-87 273
Msa0191570 AT5G40780.3 36.609 407 246 5 175 580 2 397 7.66e-84 267
Msa0191570 AT5G40780.2 36.609 407 246 5 175 580 2 397 7.66e-84 267
Msa0191570 AT1G71680.1 33.259 451 283 7 134 580 11 447 3.27e-69 231
Msa0191570 AT1G71680.2 36.152 343 202 6 134 473 11 339 6.70e-62 209
Msa0191570 AT5G41800.1 25.333 450 309 12 143 580 12 446 1.42e-27 116
Msa0191570 AT1G08230.2 25.962 416 282 10 165 571 34 432 9.18e-26 110
Msa0191570 AT5G09220.1 24.691 486 305 18 139 582 22 488 3.03e-17 85.1
Msa0191570 AT1G08230.3 24.923 325 220 9 254 571 25 332 8.23e-17 82.8
Msa0191570 AT1G08230.4 25.231 325 219 10 254 571 6 313 1.05e-16 82.0
Msa0191570 AT1G08230.6 25.231 325 219 10 254 571 6 313 1.05e-16 82.0
Msa0191570 AT1G08230.5 25.231 325 219 10 254 571 6 313 1.05e-16 82.0
Msa0191570 AT1G10010.2 23.418 474 286 17 157 582 27 471 8.42e-16 80.9
Msa0191570 AT1G10010.1 23.418 474 286 17 157 582 26 470 1.05e-15 80.5
Msa0191570 AT1G58360.1 22.689 476 287 16 157 582 35 479 1.09e-15 80.5
Msa0191570 AT5G49630.1 24.066 482 309 19 138 582 16 477 1.60e-15 79.7
Msa0191570 AT5G63850.1 21.888 466 301 17 158 582 18 461 7.91e-14 74.3
Msa0191570 AT1G77380.1 23.585 424 275 16 157 545 28 437 1.14e-13 73.9
Msa0191570 AT2G36590.1 23.324 373 249 13 189 550 57 403 4.49e-12 68.9

Find 197 sgRNAs with CRISPR-Local

Find 470 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCATACTTAAAACTTAAT+TGG 0.067919 2_1:-7202093 None:intergenic
ACTTTACACCTTATGGATTT+TGG 0.133687 2_1:+7200104 Msa0191570:CDS
TATAAACATGAAGGGTTATT+TGG 0.161352 2_1:+7198234 Msa0191570:CDS
CTATGGCCATTGGAGGCTTT+TGG 0.191651 2_1:+7201100 Msa0191570:CDS
TGATAATAATTTGTGAAAAT+AGG 0.222667 2_1:-7202188 None:intergenic
CCATTCCGAGACTCAGTTAT+AGG 0.223334 2_1:-7198304 None:intergenic
CCATTCCTCTCAAGTCTTGC+TGG 0.240146 2_1:+7201867 Msa0191570:CDS
TCAAGTCTTGCTGGTTTGTT+AGG 0.242328 2_1:+7201876 Msa0191570:CDS
CAAACCGTCCTTGCTCAATA+TGG 0.245713 2_1:+7201784 Msa0191570:CDS
GTTGGCAACTTTACACCTTA+TGG 0.246435 2_1:+7200097 Msa0191570:CDS
CAAAACCTTTGGCCGTAATA+TGG 0.258454 2_1:-7196440 None:intergenic
CAATTTGGTCCTAGAAATTC+AGG 0.265863 2_1:+7200891 Msa0191570:CDS
TGGTATTTCAATTGGATTCT+TGG 0.269679 2_1:+7201981 Msa0191570:CDS
TACCACTCCACCGTTGTTAA+AGG 0.272449 2_1:-7200625 None:intergenic
TACTTACTCCACCATGGTTT+GGG 0.272577 2_1:+7200741 Msa0191570:CDS
TTCCTTTCAGTGGCCTATCT+TGG 0.295692 2_1:+7196392 Msa0191570:CDS
GTTGACACTCTTGGTGTTGC+TGG 0.296934 2_1:-7198070 None:intergenic
GAAATTTACTCTGTTAGTTT+TGG 0.300338 2_1:+7196361 Msa0191570:CDS
TTACTTACTCCACCATGGTT+TGG 0.321058 2_1:+7200740 Msa0191570:CDS
CCAAACCTCAATTCAATTGC+AGG 0.324520 2_1:+7200688 Msa0191570:CDS
TACTATATATAGATTGAGTT+TGG 0.332172 2_1:+7202822 Msa0191570:three_prime_UTR
CCGGTCTTGGAAGTTTGACT+TGG 0.332369 2_1:+7196336 Msa0191570:CDS
ATGAAGCAGTTCCAGGTAAA+AGG 0.340688 2_1:+7200136 Msa0191570:CDS
CATTGGAGGTATTTGGAGTA+TGG 0.343372 2_1:+7202037 Msa0191570:CDS
AATTGGATTCTTGGTTGGTT+AGG 0.350163 2_1:+7201990 Msa0191570:CDS
CTTGGTGACCTTTGTCCTGA+TGG 0.353129 2_1:-7198109 None:intergenic
ATCATACTTAAAACTTAATT+GGG 0.358041 2_1:-7202092 None:intergenic
CAAGGATATGCAAAAGTAAC+TGG 0.358509 2_1:-7201912 None:intergenic
ACCTGACCCCGCTTCGGAAT+CGG 0.359302 2_1:+7202602 Msa0191570:three_prime_UTR
TCATTGATACCTGAATTTCT+AGG 0.362599 2_1:-7200900 None:intergenic
TATTTGAAAGAACAGTTTCA+TGG 0.363355 2_1:-7200575 None:intergenic
GCTTCAGTTGGTATTTCAAT+TGG 0.364746 2_1:+7201973 Msa0191570:CDS
ATTGCAGGACTGTCACTAAT+AGG 0.370043 2_1:+7200703 Msa0191570:CDS
GGATTTGTCTCATTCTTCAT+AGG 0.373458 2_1:+7201834 Msa0191570:CDS
GCTTCCTTTGATCCTTGTCT+TGG 0.383396 2_1:-7198127 None:intergenic
CAGGGGAAAGATTAGGAGTA+TGG 0.387882 2_1:+7200482 Msa0191570:intron
CAGCTGCATGAAGCAGTTCC+AGG 0.392594 2_1:+7200129 Msa0191570:CDS
CCTGATGGTGTCAGTATCTC+TGG 0.393699 2_1:-7198094 None:intergenic
CTGTTCTTTCAAATAGTTTG+TGG 0.403350 2_1:+7200583 Msa0191570:CDS
TGGCCGTCCGATTCCGAAGC+GGG 0.404628 2_1:-7202609 Msa0191580:CDS
CCTGCAATTGAATTGAGGTT+TGG 0.408191 2_1:-7200688 None:intergenic
CCAAATGTTCTGCAGGAGTT+GGG 0.409982 2_1:+7200047 Msa0191570:intron
TGCAATGTGCTTATTCCCTA+TGG 0.414072 2_1:+7201083 Msa0191570:CDS
TGTTGGTTTCCCTCCAAGAT+AGG 0.417758 2_1:-7196405 None:intergenic
TGCATATCCTTGTTTCATGT+GGG 0.419315 2_1:+7201923 Msa0191570:CDS
AAGATAGTGACTTCCGGTCT+TGG 0.422629 2_1:+7196323 Msa0191570:CDS
TCCGATTCCGAAGCGGGGTC+AGG 0.425545 2_1:-7202603 Msa0191580:CDS
TTTGCTGCAGGGGAAAGATT+AGG 0.425658 2_1:+7200475 Msa0191570:intron
CCAACAGTATGCCACGGTTA+AGG 0.431522 2_1:-7200079 None:intergenic
GCATCGACACTTTAGATTGA+AGG 0.432380 2_1:+7202120 Msa0191570:three_prime_UTR
CTTTCAGTGGCCTATCTTGG+AGG 0.435362 2_1:+7196395 Msa0191570:CDS
ATTTCAATTGGATTCTTGGT+TGG 0.436068 2_1:+7201985 Msa0191570:CDS
CCAAGATAAGCAAAAGCAAC+AGG 0.437347 2_1:-7198391 None:intergenic
TTCCACATTGGCACACGAGC+CGG 0.438598 2_1:-7201033 None:intergenic
CACCGTTGTTAAAGGATTTG+AGG 0.440502 2_1:-7200617 None:intergenic
TTGCATATCCTTGTTTCATG+TGG 0.441112 2_1:+7201922 Msa0191570:CDS
GAACTTTAGAAGCAAAATAC+TGG 0.441341 2_1:+7202372 Msa0191570:three_prime_UTR
TGCTTATTCCCTATGGCCAT+TGG 0.441666 2_1:+7201090 Msa0191570:CDS
CATAATCTCAATGCTGGTGT+TGG 0.445259 2_1:+7198349 Msa0191570:CDS
TGGAGCGAGATTTCGTTACT+TGG 0.445710 2_1:+7196002 Msa0191570:CDS
TAAGGGTTCATAAGAGATAG+AGG 0.447069 2_1:-7200791 None:intergenic
CTATAGGGACACCAATGAAA+AGG 0.450434 2_1:+7198206 Msa0191570:CDS
CCAACTGTTTATTTATCAGC+AGG 0.453151 2_1:+7200517 Msa0191570:CDS
TCCACATTGGCACACGAGCC+GGG 0.458379 2_1:-7201032 None:intergenic
ATTGATATCAGCTCTGTCTC+TGG 0.458540 2_1:-7198046 None:intergenic
TGCTCAATATGGGTTCGGTC+AGG 0.460267 2_1:+7201795 Msa0191570:CDS
AAGACCGGAAGTCACTATCT+TGG 0.464549 2_1:-7196321 None:intergenic
TACTAAACCGCCCCACGACT+TGG 0.464841 2_1:+7202869 Msa0191570:three_prime_UTR
GTTAGGTGTTGCTTTCAGCT+TGG 0.466303 2_1:+7202007 Msa0191570:CDS
GTCACTAATAGGAGCTGTTA+CGG 0.468833 2_1:+7200714 Msa0191570:CDS
GTGAAGCTTGGAATTGTGTT+GGG 0.472766 2_1:-7202581 Msa0191580:CDS
TTCACTTCTCAAACTCATAG+AGG 0.473464 2_1:-7202417 None:intergenic
GCAAGGACGGTTTGTTCGAC+TGG 0.473490 2_1:-7201775 None:intergenic
GTCCTTGCTCAATATGGGTT+CGG 0.473519 2_1:+7201790 Msa0191570:CDS
TTTCTAGCATTGAATGCACT+TGG 0.474920 2_1:+7200841 Msa0191570:CDS
GCTGTCAAAATCCCTCCATT+AGG 0.476540 2_1:-7201618 None:intergenic
ATCTCTGGTGTTGACACTCT+TGG 0.477161 2_1:-7198079 None:intergenic
AGCTTCACCTGACCCCGCTT+CGG 0.478402 2_1:+7202596 Msa0191570:three_prime_UTR
AGACCGGAAGTCACTATCTT+GGG 0.479602 2_1:-7196320 None:intergenic
TTATTCCCTATGGCCATTGG+AGG 0.481227 2_1:+7201093 Msa0191570:CDS
AGTCTTGCTGGTTTGTTAGG+AGG 0.481463 2_1:+7201879 Msa0191570:CDS
CGAGGATGAGATCCATATTA+CGG 0.481580 2_1:+7196428 Msa0191570:CDS
AAACCGTCCTTGCTCAATAT+GGG 0.484778 2_1:+7201785 Msa0191570:CDS
GCAACAGCTTTGATTCTCGT+TGG 0.487059 2_1:+7200544 Msa0191570:CDS
CAGCTTTGATTCTCGTTGGA+GGG 0.490595 2_1:+7200548 Msa0191570:CDS
TTAGATCAATGTCGTCTTGG+TGG 0.491192 2_1:+7195982 None:intergenic
GGCATATTCGTTCCTTTCAG+TGG 0.492523 2_1:+7196382 Msa0191570:CDS
CGGTCTTGGAAGTTTGACTT+GGG 0.494868 2_1:+7196337 Msa0191570:CDS
CCAAATACCTCCAATGGAAA+AGG 0.497847 2_1:-7202030 None:intergenic
CTGCTGATAAATAAACAGTT+GGG 0.498242 2_1:-7200516 None:intergenic
GTTCCCAAGATAGTGACTTC+CGG 0.498827 2_1:+7196317 Msa0191570:CDS
TAGGAAGCCATGCATCTTGA+GGG 0.499200 2_1:-7198285 None:intergenic
CGTGGGGCGGTTTAGTAACA+TGG 0.502336 2_1:-7202863 Msa0191580:intron
CCTGCTGATAAATAAACAGT+TGG 0.503649 2_1:-7200517 None:intergenic
AAGCGGGGTCAGGTGAAGCT+TGG 0.504424 2_1:-7202593 Msa0191580:CDS
AACAACGGTGGAGTGGTACC+TGG 0.505900 2_1:+7200630 Msa0191570:CDS
AAGGGTTATTTGGAAGATGT+TGG 0.506682 2_1:+7198244 Msa0191570:CDS
CACAGTCATGACATTTCAAG+AGG 0.509078 2_1:+7201654 Msa0191570:CDS
CCAGAGATACTGACACCATC+AGG 0.509945 2_1:+7198094 Msa0191570:CDS
CAAAACAAAGAGAAGATGAA+TGG 0.513465 2_1:-7202686 Msa0191580:CDS
GAGCTAGCACAAGCAGCATT+CGG 0.516115 2_1:+7200174 Msa0191570:CDS
GTTTGTTCGACTGGTGTAGC+CGG 0.517936 2_1:-7201766 None:intergenic
CAAAAGCCTCCAATGGCCAT+AGG 0.518071 2_1:-7201099 None:intergenic
CATGTGTTGGTGTTGGACAC+TGG 0.520528 2_1:-7202148 None:intergenic
ACAGCTTTGATTCTCGTTGG+AGG 0.520949 2_1:+7200547 Msa0191570:CDS
AGCTTTGATTCTCGTTGGAG+GGG 0.521908 2_1:+7200549 Msa0191570:CDS
CTCTTATGAACCCTTATCGC+TGG 0.523938 2_1:+7200798 Msa0191570:CDS
GCTAGAAATAATGAAGAAGA+AGG 0.525988 2_1:-7200826 None:intergenic
AGATAGAGGGTGGCCTCTGT+TGG 0.528482 2_1:-7200777 None:intergenic
AAGGGTACTTATAAACATGA+AGG 0.529171 2_1:+7198225 Msa0191570:CDS
GCTTCAAAACTGTCGAAAGC+AGG 0.530785 2_1:-7201744 None:intergenic
TATAGGGACACCAATGAAAA+GGG 0.530966 2_1:+7198207 Msa0191570:CDS
CAGCTGAACCAAAATCCATA+AGG 0.533298 2_1:-7200112 None:intergenic
AATAAAGAAATAAGCAACCT+TGG 0.534081 2_1:-7201061 None:intergenic
CCTTAACCGTGGCATACTGT+TGG 0.535416 2_1:+7200079 Msa0191570:CDS
AAAGGATTTGAGGTACATGT+TGG 0.535417 2_1:-7200607 None:intergenic
AAGCTAAATCATCAAATGCA+TGG 0.537484 2_1:+7198146 Msa0191570:CDS
ATAGGAAGCCATGCATCTTG+AGG 0.543503 2_1:-7198286 None:intergenic
GCCGGGTGCTTAAACGTTGA+CGG 0.544247 2_1:-7201015 None:intergenic
GCTATAATTGACCAAGTCGT+GGG 0.545185 2_1:-7202880 Msa0191580:intron
TGTCTCATTCTTCATAGGAG+TGG 0.547795 2_1:+7201839 Msa0191570:CDS
GGTGAAGCTTGGAATTGTGT+TGG 0.548778 2_1:-7202582 Msa0191580:CDS
GGAGCGAGATTTCGTTACTT+GGG 0.550040 2_1:+7196003 Msa0191570:CDS
CCAAGTCAAACTTCCAAGAC+CGG 0.551049 2_1:-7196336 None:intergenic
CCAGCAAGACTTGAGAGGAA+TGG 0.553384 2_1:-7201867 None:intergenic
CATACTCCAAATACCTCCAA+TGG 0.554754 2_1:-7202036 None:intergenic
ACCTTGGCTCCTTTCCACAT+TGG 0.554906 2_1:-7201045 None:intergenic
TTTCAGTGGCCTATCTTGGA+GGG 0.555323 2_1:+7196396 Msa0191570:CDS
TATGGATCTCATCCTCGTGT+TGG 0.557909 2_1:-7196422 None:intergenic
AAAAGCCTCCAATGGCCATA+GGG 0.559594 2_1:-7201098 None:intergenic
CAAATGTTCTGCAGGAGTTG+GGG 0.559671 2_1:+7200048 Msa0191570:intron
TGAAACAGATGCCTAATGGA+GGG 0.564181 2_1:+7201607 Msa0191570:intron
ACAGTCCTGCAATTGAATTG+AGG 0.566649 2_1:-7200693 None:intergenic
TGCATCTTGAGGGTTAAGCT+TGG 0.568084 2_1:-7198275 None:intergenic
TGCTATAATTGACCAAGTCG+TGG 0.568291 2_1:-7202881 Msa0191580:intron
TGAAAATCAATGGTGGAGGA+AGG 0.569078 2_1:-7202640 Msa0191580:CDS
CAACAAAATATAGCTTCAGT+TGG 0.569968 2_1:+7201961 Msa0191570:CDS
CCTATAACTGAGTCTCGGAA+TGG 0.574063 2_1:+7198304 Msa0191570:CDS
GGCTTCCTATAACTGAGTCT+CGG 0.575832 2_1:+7198299 Msa0191570:CDS
TAAAAGGTACAACAGATATG+TGG 0.576006 2_1:+7200152 Msa0191570:CDS
AACAGCTGAACACTACAAGA+AGG 0.580965 2_1:-7201695 None:intergenic
ATCCTGAAAATCAATGGTGG+AGG 0.581002 2_1:-7202644 Msa0191580:CDS
GTCACCAAGACAAGGATCAA+AGG 0.582418 2_1:+7198123 Msa0191570:CDS
GCTCGTGTGCCAATGTGGAA+AGG 0.586353 2_1:+7201036 Msa0191570:CDS
AGTCTAATCAAATTTCCTTG+AGG 0.586548 2_1:-7202450 None:intergenic
GGGAATTATTTCCTTAACCG+TGG 0.591369 2_1:+7200068 Msa0191570:CDS
CTTAAACGTTGACGGCATTG+TGG 0.591396 2_1:-7201007 None:intergenic
TACCTCAAATCCTTTAACAA+CGG 0.593017 2_1:+7200615 Msa0191570:CDS
GCCGTCAACGTTTAAGCACC+CGG 0.594315 2_1:+7201014 Msa0191570:CDS
CTCCAAGATAGGCCACTGAA+AGG 0.594692 2_1:-7196394 None:intergenic
AGCTTAACCCTCAAGATGCA+TGG 0.597758 2_1:+7198278 Msa0191570:CDS
CTTGGTGATATAAAAGATGT+TGG 0.598132 2_1:-7198172 None:intergenic
TGCTCTCTGTGAGCCAACAG+AGG 0.598618 2_1:+7200764 Msa0191570:CDS
CACTACAAGAAGGAATGCTA+AGG 0.599756 2_1:-7201685 None:intergenic
GAGATCCATATTACGGCCAA+AGG 0.600184 2_1:+7196435 Msa0191570:CDS
GCTTAATGTGTGAGATGAGA+AGG 0.601037 2_1:+7202512 Msa0191570:three_prime_UTR
GCTGCAATCCTGAAAATCAA+TGG 0.601831 2_1:-7202650 Msa0191580:CDS
GTGAAAGATAAAATTCCTCA+AGG 0.604480 2_1:+7202435 Msa0191570:three_prime_UTR
GTAACCACATGTGTTGGTGT+TGG 0.608050 2_1:-7202155 None:intergenic
GGCCGTCCGATTCCGAAGCG+GGG 0.609322 2_1:-7202608 Msa0191580:CDS
CTCAAATCCTTTAACAACGG+TGG 0.611417 2_1:+7200618 Msa0191570:CDS
AAGGGTTCATAAGAGATAGA+GGG 0.612398 2_1:-7200790 None:intergenic
ATCCTTTAACAACGGTGGAG+TGG 0.612729 2_1:+7200623 Msa0191570:CDS
AACCATGGTGGAGTAAGTAA+TGG 0.613563 2_1:-7200737 None:intergenic
TTGAAACAGATGCCTAATGG+AGG 0.614131 2_1:+7201606 Msa0191570:intron
ACAAACCAGCAAGACTTGAG+AGG 0.615997 2_1:-7201872 None:intergenic
GTAGGCCCAAAAGCCTCCAA+TGG 0.617051 2_1:-7201106 None:intergenic
TTTACTTACTTGGTTCCCGT+AGG 0.618030 2_1:-7201124 None:intergenic
ATAAGAACCCACATGAAACA+AGG 0.620606 2_1:-7201930 None:intergenic
GAAGATGCAAACAACTGAGT+TGG 0.620854 2_1:+7202553 Msa0191570:three_prime_UTR
ACCCGGCTCGTGTGCCAATG+TGG 0.622723 2_1:+7201031 Msa0191570:CDS
GGCCATTACTTACTCCACCA+TGG 0.627805 2_1:+7200735 Msa0191570:CDS
CACAGAGAGCACCCAAACCA+TGG 0.629148 2_1:-7200752 None:intergenic
AGGGTACTTATAAACATGAA+GGG 0.632324 2_1:+7198226 Msa0191570:CDS
GACCGAACCCATATTGAGCA+AGG 0.634891 2_1:-7201792 None:intergenic
CTATAATTGACCAAGTCGTG+GGG 0.635732 2_1:-7202879 Msa0191580:intron
TTTCTGTTCAACAAGAGCAG+AGG 0.638339 2_1:-7202722 Msa0191580:CDS
GCAATCCTGAAAATCAATGG+TGG 0.643367 2_1:-7202647 Msa0191580:CDS
TACTGACACCATCAGGACAA+AGG 0.644095 2_1:+7198101 Msa0191570:CDS
GGACAAAGGTCACCAAGACA+AGG 0.644542 2_1:+7198115 Msa0191570:CDS
TAGATAGAGAAGTGAAAACC+AGG 0.650870 2_1:-7200648 None:intergenic
GCCAATGTGGAAAGGAGCCA+AGG 0.651565 2_1:+7201044 Msa0191570:CDS
GTGGCCGTCCGATTCCGAAG+CGG 0.652522 2_1:-7202610 Msa0191580:CDS
GAACCCATATTGAGCAAGGA+CGG 0.653502 2_1:-7201788 None:intergenic
TGTCATGCAAATGTACATGA+TGG 0.655329 2_1:+7202246 Msa0191570:three_prime_UTR
TAATTGACCAAGTCGTGGGG+CGG 0.660756 2_1:-7202876 Msa0191580:intron
GTGTCCAACACCAACACATG+TGG 0.665308 2_1:+7202151 Msa0191570:three_prime_UTR
AGAAGGTGCAGCACATGATG+TGG 0.666849 2_1:+7202529 Msa0191570:three_prime_UTR
GACCCCGCTTCGGAATCGGA+CGG 0.670096 2_1:+7202606 Msa0191570:three_prime_UTR
ATTTGGAGTATGGTCAACGA+TGG 0.678414 2_1:+7202047 Msa0191570:CDS
TTGAATGTAACCACATGTGT+TGG 0.680577 2_1:-7202161 None:intergenic
AAGTTGCCAACAGTATGCCA+CGG 0.685540 2_1:-7200085 None:intergenic
GGTGGAGGAAGGATCATCTG+TGG 0.691421 2_1:-7202629 Msa0191580:CDS
GGTTCATAAGAGATAGAGGG+TGG 0.693993 2_1:-7200787 None:intergenic
AGAGAGCACCCAAACCATGG+TGG 0.713013 2_1:-7200749 None:intergenic
CTTGGAGGGAAACCAACACG+AGG 0.730983 2_1:+7196410 Msa0191570:CDS
TATGTACAGATACTAACACG+TGG 0.745954 2_1:-7202215 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTAAACAAATTTAATTTAA+TGG - chr2_1:7196892-7196911 None:intergenic 10.0%
!! TTAAACAATAAAAAGAAATT+TGG - chr2_1:7197000-7197019 None:intergenic 10.0%
!!! ATTTTTTGTTGAAAATATTA+AGG - chr2_1:7197686-7197705 None:intergenic 10.0%
!! CATTAAAAAATTAAGTAGTA+AGG - chr2_1:7196090-7196109 None:intergenic 15.0%
!!! TTAATTTTTTAATGATCCTT+GGG + chr2_1:7196096-7196115 Msa0191570:intron 15.0%
!! CTCAAATAAAAAATATTTCA+TGG + chr2_1:7196165-7196184 Msa0191570:intron 15.0%
!!! TAAATTAAATTTGTTTAGTG+TGG + chr2_1:7196893-7196912 Msa0191570:intron 15.0%
!!! AAATTAAATTTGTTTAGTGT+GGG + chr2_1:7196894-7196913 Msa0191570:intron 15.0%
!! TAAATCAAAATCATTATCAA+TGG + chr2_1:7197106-7197125 Msa0191570:intron 15.0%
!! ATAAATCTTCAAAATTGTTT+AGG - chr2_1:7197166-7197185 None:intergenic 15.0%
!!! AAGATGTTTTGAATTATTAA+TGG - chr2_1:7197651-7197670 None:intergenic 15.0%
!!! ATTGATGTGTTTTTAATTTA+TGG + chr2_1:7198462-7198481 Msa0191570:intron 15.0%
!! GGTTAAGAAATTAAAATAAA+TGG - chr2_1:7198713-7198732 None:intergenic 15.0%
!! TATATAATTGTTCATGTTAT+AGG - chr2_1:7198743-7198762 None:intergenic 15.0%
!! AATATCAAAAAGAGAAAATA+TGG - chr2_1:7199241-7199260 None:intergenic 15.0%
!!! ATATTTTCTCTTTTTGATAT+TGG + chr2_1:7199240-7199259 Msa0191570:intron 15.0%
!! TGGATGAAATTTAATAAATA+AGG + chr2_1:7199442-7199461 Msa0191570:intron 15.0%
!! GGATGAAATTTAATAAATAA+GGG + chr2_1:7199443-7199462 Msa0191570:intron 15.0%
!!! TTTAATAAATAAGGGTATAA+TGG + chr2_1:7199451-7199470 Msa0191570:intron 15.0%
!!! ATATCTTTAATACTTTAAAG+AGG - chr2_1:7200967-7200986 None:intergenic 15.0%
!! ATCATACTTAAAACTTAATT+GGG - chr2_1:7202095-7202114 None:intergenic 15.0%
!!! TGATAATAATTTGTGAAAAT+AGG - chr2_1:7202191-7202210 None:intergenic 15.0%
!!! CTTAATTTTTTAATGATCCT+TGG + chr2_1:7196095-7196114 Msa0191570:intron 20.0%
!! TGAATCAAATTCAACATATT+AGG + chr2_1:7196846-7196865 Msa0191570:intron 20.0%
!! TAAAACAAAGATGAAGAAAA+AGG - chr2_1:7196940-7196959 None:intergenic 20.0%
!!! TCCAAAGAATATTAAGATTT+TGG + chr2_1:7197047-7197066 Msa0191570:intron 20.0%
!! TCCAAAATCTTAATATTCTT+TGG - chr2_1:7197051-7197070 None:intergenic 20.0%
!!! TAAAAAATATTGATTGGGTT+GGG - chr2_1:7197133-7197152 None:intergenic 20.0%
!!! ATAAAAAATATTGATTGGGT+TGG - chr2_1:7197134-7197153 None:intergenic 20.0%
!!! ACCCAATCAATATTTTTTAT+AGG + chr2_1:7197134-7197153 Msa0191570:intron 20.0%
!!! GCCTATAAAAAATATTGATT+GGG - chr2_1:7197138-7197157 None:intergenic 20.0%
!! TGCCTATAAAAAATATTGAT+TGG - chr2_1:7197139-7197158 None:intergenic 20.0%
!! ATTAATGGTGTATTTAACAT+TGG - chr2_1:7197636-7197655 None:intergenic 20.0%
!!! TTATAGTTTTTGCAAAATCA+CGG + chr2_1:7197917-7197936 Msa0191570:intron 20.0%
!!! TTGATTATATTTTTTGGATC+AGG + chr2_1:7198000-7198019 Msa0191570:intron 20.0%
!! TTTATTTGACATAAAAGGAA+GGG + chr2_1:7199072-7199091 Msa0191570:intron 20.0%
!!! TTTGAAACTCAAAAGATAAA+GGG - chr2_1:7199174-7199193 None:intergenic 20.0%
!!! TTTTGAAACTCAAAAGATAA+AGG - chr2_1:7199175-7199194 None:intergenic 20.0%
!!! ATTAATTGTGTTGATTTCAA+TGG + chr2_1:7199363-7199382 Msa0191570:intron 20.0%
!! TCCACTAACATAATTAATAA+GGG - chr2_1:7199415-7199434 None:intergenic 20.0%
!! TTCCACTAACATAATTAATA+AGG - chr2_1:7199416-7199435 None:intergenic 20.0%
!!! AATAAGTTGAAAACAAGTTA+TGG - chr2_1:7199733-7199752 None:intergenic 20.0%
!! ATATAAAACTGTTTCCTATA+TGG + chr2_1:7200306-7200325 Msa0191570:intron 20.0%
!!! ATTATAGCATTTTCTTTTAG+AGG + chr2_1:7200865-7200884 Msa0191570:CDS 20.0%
!!! TAAAGAGGTTTTGAATTATA+AGG - chr2_1:7200952-7200971 None:intergenic 20.0%
!!! ATAAAGATGCAAATTTGTTT+TGG + chr2_1:7201198-7201217 Msa0191570:intron 20.0%
!! AAACATTTGTAAGACTATTT+CGG - chr2_1:7201422-7201441 None:intergenic 20.0%
!! GTTAACAATATGAATATGAA+GGG - chr2_1:7201479-7201498 None:intergenic 20.0%
!! TGTTAACAATATGAATATGA+AGG - chr2_1:7201480-7201499 None:intergenic 20.0%
!! CATCATACTTAAAACTTAAT+TGG - chr2_1:7202096-7202115 None:intergenic 20.0%
!! GCTATAACACTAAAAAAATA+AGG - chr2_1:7202305-7202324 None:intergenic 20.0%
!!! ATTTTTTTAGTGTTATAGCT+AGG + chr2_1:7202306-7202325 Msa0191570:three_prime_UTR 20.0%
!! TACTATATATAGATTGAGTT+TGG + chr2_1:7202822-7202841 Msa0191570:three_prime_UTR 20.0%
!!! AGTTTGGATATTTTTTACAT+TGG + chr2_1:7202838-7202857 Msa0191570:three_prime_UTR 20.0%
!!! TTGCTTTGGGATTTTTTTAT+CGG + chr2_1:7196228-7196247 Msa0191570:intron 25.0%
!!! GAAATTTACTCTGTTAGTTT+TGG + chr2_1:7196361-7196380 Msa0191570:CDS 25.0%
! TTCATCTAAATAGGTTATGA+CGG - chr2_1:7196531-7196550 None:intergenic 25.0%
! AAATGATCCTTCATCTAAAT+AGG - chr2_1:7196540-7196559 None:intergenic 25.0%
!!! ACACAAGTTATGTCTTATTT+GGG + chr2_1:7196571-7196590 Msa0191570:intron 25.0%
! GAGATCCAAAAATAAGAAAA+AGG - chr2_1:7196653-7196672 None:intergenic 25.0%
!!! TTTCTTATTTTTGGATCTCT+AGG + chr2_1:7196654-7196673 Msa0191570:intron 25.0%
!! AAAGATGAAGAAAAAGGTAT+GGG - chr2_1:7196934-7196953 None:intergenic 25.0%
! TAATTTGAGAGATGATTGTT+GGG - chr2_1:7197263-7197282 None:intergenic 25.0%
! ATGTATGATATATTGAATGG+TGG - chr2_1:7197303-7197322 None:intergenic 25.0%
! ACCATTCAATATATCATACA+TGG + chr2_1:7197302-7197321 Msa0191570:intron 25.0%
! CAAAGTCATACATATCATTA+TGG + chr2_1:7197534-7197553 Msa0191570:intron 25.0%
!! GGGTATATAAAATGATTTGT+GGG - chr2_1:7197569-7197588 None:intergenic 25.0%
! TGGGTATATAAAATGATTTG+TGG - chr2_1:7197570-7197589 None:intergenic 25.0%
! TATAGCAAAGCAAAGTAATA+AGG - chr2_1:7197781-7197800 None:intergenic 25.0%
!! TTTATAAGTACCCTTTTCAT+TGG - chr2_1:7198220-7198239 None:intergenic 25.0%
! TATAAACATGAAGGGTTATT+TGG + chr2_1:7198234-7198253 Msa0191570:CDS 25.0%
! ACACATCAATTATTGTAGAA+GGG - chr2_1:7198452-7198471 None:intergenic 25.0%
! AACACATCAATTATTGTAGA+AGG - chr2_1:7198453-7198472 None:intergenic 25.0%
! GCTATAAGTGGTTAATTATT+TGG + chr2_1:7198647-7198666 Msa0191570:intron 25.0%
!! ATGTCTCTTTATTTCATTTC+TGG + chr2_1:7198990-7199009 Msa0191570:intron 25.0%
!! TGTCCTTTATTTGACATAAA+AGG + chr2_1:7199067-7199086 Msa0191570:intron 25.0%
!! CTTCCTTTTATGTCAAATAA+AGG - chr2_1:7199073-7199092 None:intergenic 25.0%
!! CTTTATTTGACATAAAAGGA+AGG + chr2_1:7199071-7199090 Msa0191570:intron 25.0%
! TAAAAAAGTTGCTTAAAGCA+AGG - chr2_1:7199211-7199230 None:intergenic 25.0%
! ACCCTTATTAATTATGTTAG+TGG + chr2_1:7199411-7199430 Msa0191570:intron 25.0%
! TTATGTTAGTGGAATTAAGT+TGG + chr2_1:7199422-7199441 Msa0191570:intron 25.0%
!! AATAAATAAGGGTATAATGG+TGG + chr2_1:7199454-7199473 Msa0191570:intron 25.0%
! ACTATTCTAATCAGTTCAAT+TGG - chr2_1:7199963-7199982 None:intergenic 25.0%
! TATTTGAAAGAACAGTTTCA+TGG - chr2_1:7200578-7200597 None:intergenic 25.0%
! AATAAAGAAATAAGCAACCT+TGG - chr2_1:7201064-7201083 None:intergenic 25.0%
! CAGTATTCAATTTACTTACT+TGG - chr2_1:7201137-7201156 None:intergenic 25.0%
! AAGTAAATTGAATACTGTAC+TGG + chr2_1:7201140-7201159 Msa0191570:intron 25.0%
! AACTTATGAAAACAGCTAAT+AGG - chr2_1:7201366-7201385 None:intergenic 25.0%
!!! TTAGCTGTTTTCATAAGTTA+TGG + chr2_1:7201367-7201386 Msa0191570:intron 25.0%
! ATAAGTTATGGACATGTTAT+AGG + chr2_1:7201379-7201398 Msa0191570:intron 25.0%
AATTCATAGAGGAGTAGATA+GGG + chr2_1:7196051-7196070 Msa0191570:intron 30.0%
TTAAGTAGTAAGGCTATTAC+AGG - chr2_1:7196080-7196099 None:intergenic 30.0%
GGTTTATGTTGTTCCTTTAA+GGG + chr2_1:7196117-7196136 Msa0191570:intron 30.0%
! TGACAGGTTTGAAATTCTTA+TGG + chr2_1:7196272-7196291 Msa0191570:intron 30.0%
GTAAGAATCTTATCTAGAAG+CGG - chr2_1:7196508-7196527 None:intergenic 30.0%
TCATCTAAATAGGTTATGAC+GGG - chr2_1:7196530-7196549 None:intergenic 30.0%
GTCATAACCTATTTAGATGA+AGG + chr2_1:7196530-7196549 Msa0191570:intron 30.0%
! AAGACATAACTTGTGTCATT+GGG - chr2_1:7196567-7196586 None:intergenic 30.0%
! TAAGACATAACTTGTGTCAT+TGG - chr2_1:7196568-7196587 None:intergenic 30.0%
! GACACAAGTTATGTCTTATT+TGG + chr2_1:7196570-7196589 Msa0191570:intron 30.0%
!!! GTGGTCCTTTTTCTTATTTT+TGG + chr2_1:7196645-7196664 Msa0191570:intron 30.0%
TATATGTTGTGTGGTTCATT+TGG + chr2_1:7196718-7196737 Msa0191570:intron 30.0%
AATTTGATCTTCTATGTCAG+CGG - chr2_1:7196792-7196811 None:intergenic 30.0%
AACTTACACACAAATTGAAC+GGG - chr2_1:7196818-7196837 None:intergenic 30.0%
GAACTTACACACAAATTGAA+CGG - chr2_1:7196819-7196838 None:intergenic 30.0%
CAAAGATGAAGAAAAAGGTA+TGG - chr2_1:7196935-7196954 None:intergenic 30.0%
GAAGATAGAAAACATTTGTG+AGG + chr2_1:7197069-7197088 Msa0191570:intron 30.0%
GATGATACATCAAAATGGAA+TGG - chr2_1:7197201-7197220 None:intergenic 30.0%
CTTGTGATGATACATCAAAA+TGG - chr2_1:7197206-7197225 None:intergenic 30.0%
AATTTGAGAGATGATTGTTG+GGG - chr2_1:7197262-7197281 None:intergenic 30.0%
GTAATTTGAGAGATGATTGT+TGG - chr2_1:7197264-7197283 None:intergenic 30.0%
GCCATGTATGATATATTGAA+TGG - chr2_1:7197306-7197325 None:intergenic 30.0%
! TTTGATTACTTTCTTTGAGG+TGG - chr2_1:7197518-7197537 None:intergenic 30.0%
GACTTTGATTACTTTCTTTG+AGG - chr2_1:7197521-7197540 None:intergenic 30.0%
GTGTATTTAACATTGGAACT+AGG - chr2_1:7197629-7197648 None:intergenic 30.0%
CAAAGCAAAGTAATAAGGTT+GGG - chr2_1:7197776-7197795 None:intergenic 30.0%
! CTTTGCTTTGCTATATTTCA+AGG + chr2_1:7197786-7197805 Msa0191570:intron 30.0%
!!! TGTTTTAATTAGTGCATGTC+TGG + chr2_1:7197854-7197873 Msa0191570:intron 30.0%
CATTAACGAAACTAAATGCA+TGG - chr2_1:7197968-7197987 None:intergenic 30.0%
AAGCTAAATCATCAAATGCA+TGG + chr2_1:7198146-7198165 Msa0191570:CDS 30.0%
! CTTGGTGATATAAAAGATGT+TGG - chr2_1:7198175-7198194 None:intergenic 30.0%
! CAACATCTTTTATATCACCA+AGG + chr2_1:7198173-7198192 Msa0191570:CDS 30.0%
!! AAGGGTACTTATAAACATGA+AGG + chr2_1:7198225-7198244 Msa0191570:CDS 30.0%
! AGGGTACTTATAAACATGAA+GGG + chr2_1:7198226-7198245 Msa0191570:CDS 30.0%
! ACTTTTCATAATCTCAATGC+TGG + chr2_1:7198343-7198362 Msa0191570:CDS 30.0%
AAACTATCGTGTATAGCTTA+CGG - chr2_1:7198530-7198549 None:intergenic 30.0%
ATAAGCACTTATGCTATAAG+TGG + chr2_1:7198635-7198654 Msa0191570:intron 30.0%
!!! TTTTGACTTTCAAGTCTTGA+AGG + chr2_1:7198678-7198697 Msa0191570:intron 30.0%
! TTTGACTTTCAAGTCTTGAA+GGG + chr2_1:7198679-7198698 Msa0191570:intron 30.0%
GTTCATGTTATAGGTATGAT+TGG - chr2_1:7198734-7198753 None:intergenic 30.0%
! TATCTTGTGTTTTCCATTAG+TGG + chr2_1:7198898-7198917 Msa0191570:intron 30.0%
! TCTCTTTTTGATATTGGCAA+AGG + chr2_1:7199246-7199265 Msa0191570:intron 30.0%
! CTCTTTTTGATATTGGCAAA+GGG + chr2_1:7199247-7199266 Msa0191570:intron 30.0%
! TCTTTTTGATATTGGCAAAG+GGG + chr2_1:7199248-7199267 Msa0191570:intron 30.0%
TAAGGTTTGTGCGATTATTA+AGG + chr2_1:7199336-7199355 Msa0191570:intron 30.0%
GAGAAAAAAAAATGCTGCAT+TGG + chr2_1:7199476-7199495 Msa0191570:intron 30.0%
AGACAATAATTATGAGACAG+AGG + chr2_1:7199545-7199564 Msa0191570:intron 30.0%
GACAATAATTATGAGACAGA+GGG + chr2_1:7199546-7199565 Msa0191570:intron 30.0%
!! CATAATTTCTAGTACTGTTC+TGG + chr2_1:7199582-7199601 Msa0191570:intron 30.0%
! CTTTTTGTGCAAGTTCTTTT+TGG + chr2_1:7199610-7199629 Msa0191570:intron 30.0%
TTATGGAAATAACCTATGAC+AGG + chr2_1:7199706-7199725 Msa0191570:intron 30.0%
!! CTTATTTTCATTAACTCTCG+AGG + chr2_1:7199747-7199766 Msa0191570:intron 30.0%
TCATATAAGTGCTTGTGTAT+AGG - chr2_1:7199842-7199861 None:intergenic 30.0%
! ACATCTAGAAATAGAAGCAT+AGG - chr2_1:7199914-7199933 None:intergenic 30.0%
TGAAAAACAGTTCAATCTCA+TGG + chr2_1:7200003-7200022 Msa0191570:intron 30.0%
! ACTTTACACCTTATGGATTT+TGG + chr2_1:7200104-7200123 Msa0191570:CDS 30.0%
! TAAAAGGTACAACAGATATG+TGG + chr2_1:7200152-7200171 Msa0191570:CDS 30.0%
! ATATTTTGTACTTTTGCTGC+AGG + chr2_1:7200463-7200482 Msa0191570:intron 30.0%
! TATTTTGTACTTTTGCTGCA+GGG + chr2_1:7200464-7200483 Msa0191570:intron 30.0%
CTGCTGATAAATAAACAGTT+GGG - chr2_1:7200519-7200538 None:intergenic 30.0%
CTGTTCTTTCAAATAGTTTG+TGG + chr2_1:7200583-7200602 Msa0191570:CDS 30.0%
TACCTCAAATCCTTTAACAA+CGG + chr2_1:7200615-7200634 Msa0191570:CDS 30.0%
GCTAGAAATAATGAAGAAGA+AGG - chr2_1:7200829-7200848 None:intergenic 30.0%
!! TTCTTTTAGAGGTCACAATT+TGG + chr2_1:7200876-7200895 Msa0191570:CDS 30.0%
TCATTGATACCTGAATTTCT+AGG - chr2_1:7200903-7200922 None:intergenic 30.0%
ATAAAGCTGTTTATCCAAAC+AGG - chr2_1:7201247-7201266 None:intergenic 30.0%
CTTACAAATGTTTATGTGAG+CGG + chr2_1:7201429-7201448 Msa0191570:intron 30.0%
!!! ATTTTGAAACAGATGCCTAA+TGG + chr2_1:7201603-7201622 Msa0191570:intron 30.0%
!!! TCAGGTTTTAGAGTTTTCTT+TGG + chr2_1:7201813-7201832 Msa0191570:CDS 30.0%
! CAACTGAAGCTATATTTTGT+TGG - chr2_1:7201963-7201982 None:intergenic 30.0%
CAACAAAATATAGCTTCAGT+TGG + chr2_1:7201961-7201980 Msa0191570:CDS 30.0%
TGGTATTTCAATTGGATTCT+TGG + chr2_1:7201981-7202000 Msa0191570:CDS 30.0%
ATTTCAATTGGATTCTTGGT+TGG + chr2_1:7201985-7202004 Msa0191570:CDS 30.0%
! GAACTTTAGAAGCAAAATAC+TGG + chr2_1:7202372-7202391 Msa0191570:three_prime_UTR 30.0%
GTGAAAGATAAAATTCCTCA+AGG + chr2_1:7202435-7202454 Msa0191570:three_prime_UTR 30.0%
AGTCTAATCAAATTTCCTTG+AGG - chr2_1:7202453-7202472 None:intergenic 30.0%
CAAAACAAAGAGAAGATGAA+TGG - chr2_1:7202689-7202708 Msa0191580:CDS 30.0%
GATTTCGTTACTTGGGTATA+TGG + chr2_1:7196010-7196029 Msa0191570:intron 35.0%
CTATCTACTCCTCTATGAAT+TGG - chr2_1:7196052-7196071 None:intergenic 35.0%
CAATTCATAGAGGAGTAGAT+AGG + chr2_1:7196050-7196069 Msa0191570:intron 35.0%
AAAGGAACAACATAAACCCA+AGG - chr2_1:7196115-7196134 None:intergenic 35.0%
GGGTTTATGTTGTTCCTTTA+AGG + chr2_1:7196116-7196135 Msa0191570:intron 35.0%
TATCGAAAGCTTTCCCTTAA+AGG - chr2_1:7196133-7196152 None:intergenic 35.0%
! CAGGTTTGAAATTCTTATGG+TGG + chr2_1:7196275-7196294 Msa0191570:intron 35.0%
! ATTTGGGAAGTGAGTTGAAT+CGG + chr2_1:7196587-7196606 Msa0191570:intron 35.0%
! CACTTGCACTTTTACTTATG+TGG + chr2_1:7196626-7196645 Msa0191570:intron 35.0%
TACCTTCTCCAGAAAAACAA+TGG + chr2_1:7196758-7196777 Msa0191570:intron 35.0%
!! TTGAACCTCCATTGTTTTTC+TGG - chr2_1:7196769-7196788 None:intergenic 35.0%
ACTTACACACAAATTGAACG+GGG - chr2_1:7196817-7196836 None:intergenic 35.0%
! AATTTGTTTAGTGTGGGTTG+TGG + chr2_1:7196900-7196919 Msa0191570:intron 35.0%
TTCATGCATTGCATTCCTTT+CGG + chr2_1:7197360-7197379 Msa0191570:intron 35.0%
ATTGGAACTAGGTACTAATG+CGG - chr2_1:7197618-7197637 None:intergenic 35.0%
TAAGAAGAAGATGTGAGCTA+AGG - chr2_1:7197718-7197737 None:intergenic 35.0%
GCAAAGCAAAGTAATAAGGT+TGG - chr2_1:7197777-7197796 None:intergenic 35.0%
GTAGTGTTACAAAATCACGA+TGG - chr2_1:7197892-7197911 None:intergenic 35.0%
!!! CAAGGTTTTTGAGTCCTATA+GGG + chr2_1:7198191-7198210 Msa0191570:CDS 35.0%
TATAGGGACACCAATGAAAA+GGG + chr2_1:7198207-7198226 Msa0191570:CDS 35.0%
AAGGGTTATTTGGAAGATGT+TGG + chr2_1:7198244-7198263 Msa0191570:CDS 35.0%
!!! AAGGAAGGGATTTTGAAATG+CGG + chr2_1:7199086-7199105 Msa0191570:intron 35.0%
TTGAGTAGTTTACCCAAACA+AGG + chr2_1:7199888-7199907 Msa0191570:intron 35.0%
! TATCTGTTGTACCTTTTACC+TGG - chr2_1:7200150-7200169 None:intergenic 35.0%
! GCAGTTTTACATCGTTAATC+AGG - chr2_1:7200271-7200290 None:intergenic 35.0%
ACATGTTCTTTGAGCCATAT+AGG - chr2_1:7200323-7200342 None:intergenic 35.0%
CTAAACATTACTACACCACA+AGG - chr2_1:7200440-7200459 None:intergenic 35.0%
! ATTTTGTACTTTTGCTGCAG+GGG + chr2_1:7200465-7200484 Msa0191570:intron 35.0%
CCTGCTGATAAATAAACAGT+TGG - chr2_1:7200520-7200539 None:intergenic 35.0%
CCAACTGTTTATTTATCAGC+AGG + chr2_1:7200517-7200536 Msa0191570:CDS 35.0%
! AAAGGATTTGAGGTACATGT+TGG - chr2_1:7200610-7200629 None:intergenic 35.0%
TAGATAGAGAAGTGAAAACC+AGG - chr2_1:7200651-7200670 None:intergenic 35.0%
AAGGGTTCATAAGAGATAGA+GGG - chr2_1:7200793-7200812 None:intergenic 35.0%
TAAGGGTTCATAAGAGATAG+AGG - chr2_1:7200794-7200813 None:intergenic 35.0%
! TTTCTAGCATTGAATGCACT+TGG + chr2_1:7200841-7200860 Msa0191570:CDS 35.0%
CAATTTGGTCCTAGAAATTC+AGG + chr2_1:7200891-7200910 Msa0191570:CDS 35.0%
GCAACACATGAACAATTTCT+GGG - chr2_1:7200930-7200949 None:intergenic 35.0%
!!! TATGCACTTTGTTTTCATGC+AGG + chr2_1:7200984-7201003 Msa0191570:intron 35.0%
TCACAAAACTTCAACCTGTT+TGG + chr2_1:7201230-7201249 Msa0191570:intron 35.0%
GGATTTGTCTCATTCTTCAT+AGG + chr2_1:7201834-7201853 Msa0191570:CDS 35.0%
CAAGGATATGCAAAAGTAAC+TGG - chr2_1:7201915-7201934 None:intergenic 35.0%
! TTGCATATCCTTGTTTCATG+TGG + chr2_1:7201922-7201941 Msa0191570:CDS 35.0%
! TGCATATCCTTGTTTCATGT+GGG + chr2_1:7201923-7201942 Msa0191570:CDS 35.0%
ATAAGAACCCACATGAAACA+AGG - chr2_1:7201933-7201952 None:intergenic 35.0%
! GCTTCAGTTGGTATTTCAAT+TGG + chr2_1:7201973-7201992 Msa0191570:CDS 35.0%
! AATTGGATTCTTGGTTGGTT+AGG + chr2_1:7201990-7202009 Msa0191570:CDS 35.0%
TTGAATGTAACCACATGTGT+TGG - chr2_1:7202164-7202183 None:intergenic 35.0%
TATGTACAGATACTAACACG+TGG - chr2_1:7202218-7202237 None:intergenic 35.0%
TGTCATGCAAATGTACATGA+TGG + chr2_1:7202246-7202265 Msa0191570:three_prime_UTR 35.0%
TTCACTTCTCAAACTCATAG+AGG - chr2_1:7202420-7202439 None:intergenic 35.0%
CTCTATGAATTGGTCAATCG+TGG - chr2_1:7196042-7196061 None:intergenic 40.0%
CACGATTGACCAATTCATAG+AGG + chr2_1:7196040-7196059 Msa0191570:intron 40.0%
!! TTATCGGAGAGAGCTTTGTT+TGG + chr2_1:7196244-7196263 Msa0191570:intron 40.0%
!! TATCGGAGAGAGCTTTGTTT+GGG + chr2_1:7196245-7196264 Msa0191570:intron 40.0%
CGAGGATGAGATCCATATTA+CGG + chr2_1:7196428-7196447 Msa0191570:CDS 40.0%
CAAAACCTTTGGCCGTAATA+TGG - chr2_1:7196443-7196462 None:intergenic 40.0%
! TATTACGGCCAAAGGTTTTG+AGG + chr2_1:7196443-7196462 Msa0191570:intron 40.0%
TCTCAACTCCTCAAAACCTT+TGG - chr2_1:7196454-7196473 None:intergenic 40.0%
! TTTGGGAAGTGAGTTGAATC+GGG + chr2_1:7196588-7196607 Msa0191570:intron 40.0%
AGATAAGTTTGACCTCGATG+TGG + chr2_1:7196694-7196713 Msa0191570:intron 40.0%
!! CTCCATTGTTTTTCTGGAGA+AGG - chr2_1:7196763-7196782 None:intergenic 40.0%
CTTCTCCAGAAAAACAATGG+AGG + chr2_1:7196761-7196780 Msa0191570:intron 40.0%
TGGTAACAAAAGTAGCCGAA+AGG - chr2_1:7197378-7197397 None:intergenic 40.0%
TTAGTACTTGTGGGTCTCTA+TGG - chr2_1:7197398-7197417 None:intergenic 40.0%
GTGAGTGTGTTAGTACTTGT+GGG - chr2_1:7197407-7197426 None:intergenic 40.0%
AGTGAGTGTGTTAGTACTTG+TGG - chr2_1:7197408-7197427 None:intergenic 40.0%
TAATGCGGATTCCTAGTGTT+TGG - chr2_1:7197603-7197622 None:intergenic 40.0%
! ATGCATGGTTGATATCACAG+TGG - chr2_1:7197953-7197972 None:intergenic 40.0%
!! GGATCAGGTGATTTTAGTGA+TGG + chr2_1:7198015-7198034 Msa0191570:intron 40.0%
!! TCAGGTGATTTTAGTGATGG+AGG + chr2_1:7198018-7198037 Msa0191570:intron 40.0%
ATTGATATCAGCTCTGTCTC+TGG - chr2_1:7198049-7198068 None:intergenic 40.0%
CCTATAGGACTCAAAAACCT+TGG - chr2_1:7198193-7198212 None:intergenic 40.0%
!!! CCAAGGTTTTTGAGTCCTAT+AGG + chr2_1:7198190-7198209 Msa0191570:CDS 40.0%
!! CTTTTCATTGGTGTCCCTAT+AGG - chr2_1:7198208-7198227 None:intergenic 40.0%
CTATAGGGACACCAATGAAA+AGG + chr2_1:7198206-7198225 Msa0191570:CDS 40.0%
CATAATCTCAATGCTGGTGT+TGG + chr2_1:7198349-7198368 Msa0191570:CDS 40.0%
CCAAGATAAGCAAAAGCAAC+AGG - chr2_1:7198394-7198413 None:intergenic 40.0%
!!! CCTGTTGCTTTTGCTTATCT+TGG + chr2_1:7198391-7198410 Msa0191570:CDS 40.0%
!! TTGCTTTTGCTTATCTTGGC+TGG + chr2_1:7198395-7198414 Msa0191570:CDS 40.0%
!! CCACTAAAAAGCACCACTAA+TGG - chr2_1:7198914-7198933 None:intergenic 40.0%
!! CCATTAGTGGTGCTTTTTAG+TGG + chr2_1:7198911-7198930 Msa0191570:intron 40.0%
!!! AGGAAGGGATTTTGAAATGC+GGG + chr2_1:7199087-7199106 Msa0191570:intron 40.0%
GTAACCACTAAGCAACTTGA+TGG - chr2_1:7199286-7199305 None:intergenic 40.0%
GACTGATATTGTGAGAAGGA+GGG - chr2_1:7199313-7199332 None:intergenic 40.0%
AGACGACTGATATTGTGAGA+AGG - chr2_1:7199317-7199336 None:intergenic 40.0%
CTCACAATATCAGTCGTCTA+AGG + chr2_1:7199318-7199337 Msa0191570:intron 40.0%
AGACTGTTCGAGAGAGTTTA+TGG + chr2_1:7199689-7199708 Msa0191570:intron 40.0%
ACAAGTTATGGACCTGTCAT+AGG - chr2_1:7199721-7199740 None:intergenic 40.0%
!! TAGAAGCATAGGCCTTGTTT+GGG - chr2_1:7199903-7199922 None:intergenic 40.0%
!! ATAGAAGCATAGGCCTTGTT+TGG - chr2_1:7199904-7199923 None:intergenic 40.0%
GTTTCATCCAAATGTTCTGC+AGG + chr2_1:7200040-7200059 Msa0191570:intron 40.0%
GGGAATTATTTCCTTAACCG+TGG + chr2_1:7200068-7200087 Msa0191570:CDS 40.0%
GTTGGCAACTTTACACCTTA+TGG + chr2_1:7200097-7200116 Msa0191570:CDS 40.0%
CAGCTGAACCAAAATCCATA+AGG - chr2_1:7200115-7200134 None:intergenic 40.0%
ATGAAGCAGTTCCAGGTAAA+AGG + chr2_1:7200136-7200155 Msa0191570:CDS 40.0%
TGTTAGTCACTCAGAAACCT+CGG + chr2_1:7200340-7200359 Msa0191570:intron 40.0%
TCTAACACATGCTATCCTTG+TGG + chr2_1:7200422-7200441 Msa0191570:intron 40.0%
CACCGTTGTTAAAGGATTTG+AGG - chr2_1:7200620-7200639 None:intergenic 40.0%
CTCAAATCCTTTAACAACGG+TGG + chr2_1:7200618-7200637 Msa0191570:CDS 40.0%
CCTGCAATTGAATTGAGGTT+TGG - chr2_1:7200691-7200710 None:intergenic 40.0%
CCAAACCTCAATTCAATTGC+AGG + chr2_1:7200688-7200707 Msa0191570:CDS 40.0%
ACAGTCCTGCAATTGAATTG+AGG - chr2_1:7200696-7200715 None:intergenic 40.0%
ATTGCAGGACTGTCACTAAT+AGG + chr2_1:7200703-7200722 Msa0191570:CDS 40.0%
GTCACTAATAGGAGCTGTTA+CGG + chr2_1:7200714-7200733 Msa0191570:CDS 40.0%
! AACCATGGTGGAGTAAGTAA+TGG - chr2_1:7200740-7200759 None:intergenic 40.0%
TTACTTACTCCACCATGGTT+TGG + chr2_1:7200740-7200759 Msa0191570:CDS 40.0%
TACTTACTCCACCATGGTTT+GGG + chr2_1:7200741-7200760 Msa0191570:CDS 40.0%
GGCAACACATGAACAATTTC+TGG - chr2_1:7200931-7200950 None:intergenic 40.0%
TGCAATGTGCTTATTCCCTA+TGG + chr2_1:7201083-7201102 Msa0191570:CDS 40.0%
TTTACTTACTTGGTTCCCGT+AGG - chr2_1:7201127-7201146 None:intergenic 40.0%
ACTGTACTGGAATGATAGAG+AGG + chr2_1:7201153-7201172 Msa0191570:intron 40.0%
AGACTATTTCGGAGAACTTG+TGG - chr2_1:7201411-7201430 None:intergenic 40.0%
TTGAAACAGATGCCTAATGG+AGG + chr2_1:7201606-7201625 Msa0191570:intron 40.0%
TGAAACAGATGCCTAATGGA+GGG + chr2_1:7201607-7201626 Msa0191570:intron 40.0%
CACAGTCATGACATTTCAAG+AGG + chr2_1:7201654-7201673 Msa0191570:CDS 40.0%
CACTACAAGAAGGAATGCTA+AGG - chr2_1:7201688-7201707 None:intergenic 40.0%
AACAGCTGAACACTACAAGA+AGG - chr2_1:7201698-7201717 None:intergenic 40.0%
AAACCGTCCTTGCTCAATAT+GGG + chr2_1:7201785-7201804 Msa0191570:CDS 40.0%
TGTCTCATTCTTCATAGGAG+TGG + chr2_1:7201839-7201858 Msa0191570:CDS 40.0%
!! TCAAGTCTTGCTGGTTTGTT+AGG + chr2_1:7201876-7201895 Msa0191570:CDS 40.0%
CCAAATACCTCCAATGGAAA+AGG - chr2_1:7202033-7202052 None:intergenic 40.0%
!!! CCTTTTCCATTGGAGGTATT+TGG + chr2_1:7202030-7202049 Msa0191570:CDS 40.0%
CATACTCCAAATACCTCCAA+TGG - chr2_1:7202039-7202058 None:intergenic 40.0%
!! CATTGGAGGTATTTGGAGTA+TGG + chr2_1:7202037-7202056 Msa0191570:CDS 40.0%
! ATTTGGAGTATGGTCAACGA+TGG + chr2_1:7202047-7202066 Msa0191570:CDS 40.0%
! GCATCGACACTTTAGATTGA+AGG + chr2_1:7202120-7202139 Msa0191570:three_prime_UTR 40.0%
GCTTAATGTGTGAGATGAGA+AGG + chr2_1:7202512-7202531 Msa0191570:three_prime_UTR 40.0%
GAAGATGCAAACAACTGAGT+TGG + chr2_1:7202553-7202572 Msa0191570:three_prime_UTR 40.0%
GTGAAGCTTGGAATTGTGTT+GGG - chr2_1:7202584-7202603 Msa0191580:CDS 40.0%
! TGAAAATCAATGGTGGAGGA+AGG - chr2_1:7202643-7202662 Msa0191580:CDS 40.0%
!!! TTCCTCCACCATTGATTTTC+AGG + chr2_1:7202642-7202661 Msa0191570:three_prime_UTR 40.0%
ATCCTGAAAATCAATGGTGG+AGG - chr2_1:7202647-7202666 Msa0191580:CDS 40.0%
GCAATCCTGAAAATCAATGG+TGG - chr2_1:7202650-7202669 Msa0191580:CDS 40.0%
GCTGCAATCCTGAAAATCAA+TGG - chr2_1:7202653-7202672 Msa0191580:CDS 40.0%
TTTCTGTTCAACAAGAGCAG+AGG - chr2_1:7202725-7202744 Msa0191580:CDS 40.0%
CTATAATTGACCAAGTCGTG+GGG - chr2_1:7202882-7202901 Msa0191580:intron 40.0%
GCTATAATTGACCAAGTCGT+GGG - chr2_1:7202883-7202902 Msa0191580:intron 40.0%
TGCTATAATTGACCAAGTCG+TGG - chr2_1:7202884-7202903 Msa0191580:intron 40.0%
TGGAGCGAGATTTCGTTACT+TGG + chr2_1:7196002-7196021 Msa0191570:CDS 45.0%
GGAGCGAGATTTCGTTACTT+GGG + chr2_1:7196003-7196022 Msa0191570:CDS 45.0%
TGGTTGCTGATATGAGTACG+TGG + chr2_1:7196185-7196204 Msa0191570:intron 45.0%
CTGATATGAGTACGTGGTGT+GGG + chr2_1:7196191-7196210 Msa0191570:intron 45.0%
!! AGTGAGGGTGTGATTTGCTT+TGG + chr2_1:7196214-7196233 Msa0191570:intron 45.0%
!! GTGAGGGTGTGATTTGCTTT+GGG + chr2_1:7196215-7196234 Msa0191570:intron 45.0%
!! ATCGGAGAGAGCTTTGTTTG+GGG + chr2_1:7196246-7196265 Msa0191570:intron 45.0%
TGAAATTCTTATGGTGGCCC+TGG + chr2_1:7196281-7196300 Msa0191570:intron 45.0%
GAACACCTACAACCAATCCA+GGG - chr2_1:7196301-7196320 None:intergenic 45.0%
GTTCCCAAGATAGTGACTTC+CGG + chr2_1:7196317-7196336 Msa0191570:CDS 45.0%
AGACCGGAAGTCACTATCTT+GGG - chr2_1:7196323-7196342 None:intergenic 45.0%
AAGACCGGAAGTCACTATCT+TGG - chr2_1:7196324-7196343 None:intergenic 45.0%
AAGATAGTGACTTCCGGTCT+TGG + chr2_1:7196323-7196342 Msa0191570:CDS 45.0%
CCAAGTCAAACTTCCAAGAC+CGG - chr2_1:7196339-7196358 None:intergenic 45.0%
! CGGTCTTGGAAGTTTGACTT+GGG + chr2_1:7196337-7196356 Msa0191570:CDS 45.0%
GGCATATTCGTTCCTTTCAG+TGG + chr2_1:7196382-7196401 Msa0191570:CDS 45.0%
TTCCTTTCAGTGGCCTATCT+TGG + chr2_1:7196392-7196411 Msa0191570:CDS 45.0%
TTTCAGTGGCCTATCTTGGA+GGG + chr2_1:7196396-7196415 Msa0191570:CDS 45.0%
!! TGTTGGTTTCCCTCCAAGAT+AGG - chr2_1:7196408-7196427 None:intergenic 45.0%
TATGGATCTCATCCTCGTGT+TGG - chr2_1:7196425-7196444 None:intergenic 45.0%
GAGATCCATATTACGGCCAA+AGG + chr2_1:7196435-7196454 Msa0191570:CDS 45.0%
! TTGGGAAGTGAGTTGAATCG+GGG + chr2_1:7196589-7196608 Msa0191570:intron 45.0%
CACAACATATAGCCACATCG+AGG - chr2_1:7196709-7196728 None:intergenic 45.0%
CGATGTGGCTATATGTTGTG+TGG + chr2_1:7196709-7196728 Msa0191570:intron 45.0%
ATGATTGTTGGGGCCATTAG+GGG - chr2_1:7197252-7197271 None:intergenic 45.0%
GATGATTGTTGGGGCCATTA+GGG - chr2_1:7197253-7197272 None:intergenic 45.0%
AGATGATTGTTGGGGCCATT+AGG - chr2_1:7197254-7197273 None:intergenic 45.0%
! CCGTTGATGAATGTAGTGGT+GGG - chr2_1:7197328-7197347 None:intergenic 45.0%
CCCACCACTACATTCATCAA+CGG + chr2_1:7197325-7197344 Msa0191570:intron 45.0%
! ACCGTTGATGAATGTAGTGG+TGG - chr2_1:7197329-7197348 None:intergenic 45.0%
! GTGACCGTTGATGAATGTAG+TGG - chr2_1:7197332-7197351 None:intergenic 45.0%
AGTGTTTGGTCGACAAGTGT+GGG - chr2_1:7197589-7197608 None:intergenic 45.0%
TAGTGTTTGGTCGACAAGTG+TGG - chr2_1:7197590-7197609 None:intergenic 45.0%
ACACTTGTCGACCAAACACT+AGG + chr2_1:7197589-7197608 Msa0191570:intron 45.0%
!! ATCTCTGGTGTTGACACTCT+TGG - chr2_1:7198082-7198101 None:intergenic 45.0%
TACTGACACCATCAGGACAA+AGG + chr2_1:7198101-7198120 Msa0191570:CDS 45.0%
GTCACCAAGACAAGGATCAA+AGG + chr2_1:7198123-7198142 Msa0191570:CDS 45.0%
GCTTCCTTTGATCCTTGTCT+TGG - chr2_1:7198130-7198149 None:intergenic 45.0%
TGCATCTTGAGGGTTAAGCT+TGG - chr2_1:7198278-7198297 None:intergenic 45.0%
AGCTTAACCCTCAAGATGCA+TGG + chr2_1:7198278-7198297 Msa0191570:CDS 45.0%
TAGGAAGCCATGCATCTTGA+GGG - chr2_1:7198288-7198307 None:intergenic 45.0%
ATAGGAAGCCATGCATCTTG+AGG - chr2_1:7198289-7198308 None:intergenic 45.0%
GGCTTCCTATAACTGAGTCT+CGG + chr2_1:7198299-7198318 Msa0191570:CDS 45.0%
CCATTCCGAGACTCAGTTAT+AGG - chr2_1:7198307-7198326 None:intergenic 45.0%
CCTATAACTGAGTCTCGGAA+TGG + chr2_1:7198304-7198323 Msa0191570:CDS 45.0%
!!! CAATGCTGGTGTTGGTTTTC+AGG + chr2_1:7198357-7198376 Msa0191570:CDS 45.0%
TTTCAACAAGCCTGCCTCAA+TGG + chr2_1:7199116-7199135 Msa0191570:intron 45.0%
CTGCCTCAATGGAAAGAGAT+GGG + chr2_1:7199127-7199146 Msa0191570:intron 45.0%
TGCCTCAATGGAAAGAGATG+GGG + chr2_1:7199128-7199147 Msa0191570:intron 45.0%
! CAACTTGATGGCCAACACAA+TGG - chr2_1:7199274-7199293 None:intergenic 45.0%
! TTGGCCATCAAGTTGCTTAG+TGG + chr2_1:7199279-7199298 Msa0191570:intron 45.0%
CGACTGATATTGTGAGAAGG+AGG - chr2_1:7199314-7199333 None:intergenic 45.0%
TCCAAATGTTCTGCAGGAGT+TGG + chr2_1:7200046-7200065 Msa0191570:intron 45.0%
CCAAATGTTCTGCAGGAGTT+GGG + chr2_1:7200047-7200066 Msa0191570:intron 45.0%
CAAATGTTCTGCAGGAGTTG+GGG + chr2_1:7200048-7200067 Msa0191570:intron 45.0%
AAGTTGCCAACAGTATGCCA+CGG - chr2_1:7200088-7200107 None:intergenic 45.0%
CTCAGAAACCTCGGCAAAAT+TGG + chr2_1:7200349-7200368 Msa0191570:intron 45.0%
! AAGTTCAGCCAATTTTGCCG+AGG - chr2_1:7200360-7200379 None:intergenic 45.0%
TTTGCTGCAGGGGAAAGATT+AGG + chr2_1:7200475-7200494 Msa0191570:intron 45.0%
CAGGGGAAAGATTAGGAGTA+TGG + chr2_1:7200482-7200501 Msa0191570:intron 45.0%
! GCAACAGCTTTGATTCTCGT+TGG + chr2_1:7200544-7200563 Msa0191570:CDS 45.0%
! ACAGCTTTGATTCTCGTTGG+AGG + chr2_1:7200547-7200566 Msa0191570:CDS 45.0%
! CAGCTTTGATTCTCGTTGGA+GGG + chr2_1:7200548-7200567 Msa0191570:CDS 45.0%
! AGCTTTGATTCTCGTTGGAG+GGG + chr2_1:7200549-7200568 Msa0191570:CDS 45.0%
ATCCTTTAACAACGGTGGAG+TGG + chr2_1:7200623-7200642 Msa0191570:CDS 45.0%
TACCACTCCACCGTTGTTAA+AGG - chr2_1:7200628-7200647 None:intergenic 45.0%
GGTTCATAAGAGATAGAGGG+TGG - chr2_1:7200790-7200809 None:intergenic 45.0%
CTCTTATGAACCCTTATCGC+TGG + chr2_1:7200798-7200817 Msa0191570:CDS 45.0%
! GAAGGTTTTGCCAGCGATAA+GGG - chr2_1:7200811-7200830 None:intergenic 45.0%
! AGAAGGTTTTGCCAGCGATA+AGG - chr2_1:7200812-7200831 None:intergenic 45.0%
CTTAAACGTTGACGGCATTG+TGG - chr2_1:7201010-7201029 None:intergenic 45.0%
TGCTTATTCCCTATGGCCAT+TGG + chr2_1:7201090-7201109 Msa0191570:CDS 45.0%
TTATTCCCTATGGCCATTGG+AGG + chr2_1:7201093-7201112 Msa0191570:CDS 45.0%
AAAAGCCTCCAATGGCCATA+GGG - chr2_1:7201101-7201120 None:intergenic 45.0%
! TATGGCCATTGGAGGCTTTT+GGG + chr2_1:7201101-7201120 Msa0191570:CDS 45.0%
GTACTGGAATGATAGAGAGG+AGG + chr2_1:7201156-7201175 Msa0191570:intron 45.0%
GCTGTCAAAATCCCTCCATT+AGG - chr2_1:7201621-7201640 None:intergenic 45.0%
GCTTCAAAACTGTCGAAAGC+AGG - chr2_1:7201747-7201766 None:intergenic 45.0%
!!! GCTTTCGACAGTTTTGAAGC+CGG + chr2_1:7201747-7201766 Msa0191570:CDS 45.0%
CAAACCGTCCTTGCTCAATA+TGG + chr2_1:7201784-7201803 Msa0191570:CDS 45.0%
GAACCCATATTGAGCAAGGA+CGG - chr2_1:7201791-7201810 None:intergenic 45.0%
GTCCTTGCTCAATATGGGTT+CGG + chr2_1:7201790-7201809 Msa0191570:CDS 45.0%
ACAAACCAGCAAGACTTGAG+AGG - chr2_1:7201875-7201894 None:intergenic 45.0%
!! AGTCTTGCTGGTTTGTTAGG+AGG + chr2_1:7201879-7201898 Msa0191570:CDS 45.0%
!! GTTAGGTGTTGCTTTCAGCT+TGG + chr2_1:7202007-7202026 Msa0191570:CDS 45.0%
!! TTCAGCTTGGCCTTTTCCAT+TGG + chr2_1:7202020-7202039 Msa0191570:CDS 45.0%
! GTAACCACATGTGTTGGTGT+TGG - chr2_1:7202158-7202177 None:intergenic 45.0%
GGTGAAGCTTGGAATTGTGT+TGG - chr2_1:7202585-7202604 Msa0191580:CDS 45.0%
!!! AAAAATTTGATTATATTTTT+TGG + chr2_1:7197994-7198013 Msa0191570:intron 5.0%
!! TAAAATAAAATAAAGTAAAA+GGG - chr2_1:7198870-7198889 None:intergenic 5.0%
!! ATAAAATAAAATAAAGTAAA+AGG - chr2_1:7198871-7198890 None:intergenic 5.0%
GCTGATATGAGTACGTGGTG+TGG + chr2_1:7196190-7196209 Msa0191570:intron 50.0%
!! GCTTTGTTTGGGGACATGAC+AGG + chr2_1:7196256-7196275 Msa0191570:intron 50.0%
TTCTTATGGTGGCCCTGGAT+TGG + chr2_1:7196286-7196305 Msa0191570:intron 50.0%
GGAACACCTACAACCAATCC+AGG - chr2_1:7196302-7196321 None:intergenic 50.0%
CCGGTCTTGGAAGTTTGACT+TGG + chr2_1:7196336-7196355 Msa0191570:CDS 50.0%
CTCCAAGATAGGCCACTGAA+AGG - chr2_1:7196397-7196416 None:intergenic 50.0%
CTTTCAGTGGCCTATCTTGG+AGG + chr2_1:7196395-7196414 Msa0191570:CDS 50.0%
GAGGAGTTGAGACTCGTCTA+AGG + chr2_1:7196462-7196481 Msa0191570:intron 50.0%
TGATTGTTGGGGCCATTAGG+GGG - chr2_1:7197251-7197270 None:intergenic 50.0%
!! GTTGACACTCTTGGTGTTGC+TGG - chr2_1:7198073-7198092 None:intergenic 50.0%
! CCTGATGGTGTCAGTATCTC+TGG - chr2_1:7198097-7198116 None:intergenic 50.0%
CCAGAGATACTGACACCATC+AGG + chr2_1:7198094-7198113 Msa0191570:CDS 50.0%
! CTTGGTGACCTTTGTCCTGA+TGG - chr2_1:7198112-7198131 None:intergenic 50.0%
GGACAAAGGTCACCAAGACA+AGG + chr2_1:7198115-7198134 Msa0191570:CDS 50.0%
CCATCTCTTTCCATTGAGGC+AGG - chr2_1:7199129-7199148 None:intergenic 50.0%
CCTGCCTCAATGGAAAGAGA+TGG + chr2_1:7199126-7199145 Msa0191570:intron 50.0%
GCCTCAATGGAAAGAGATGG+GGG + chr2_1:7199129-7199148 Msa0191570:intron 50.0%
TCCCCCATCTCTTTCCATTG+AGG - chr2_1:7199133-7199152 None:intergenic 50.0%
ATGGAAAGAGATGGGGGAGA+AGG + chr2_1:7199135-7199154 Msa0191570:intron 50.0%
CTCTCGAACAGTCTCACAAC+TGG - chr2_1:7199683-7199702 None:intergenic 50.0%
CCCAACTCCTGCAGAACATT+TGG - chr2_1:7200050-7200069 None:intergenic 50.0%
CCAACAGTATGCCACGGTTA+AGG - chr2_1:7200082-7200101 None:intergenic 50.0%
CCTTAACCGTGGCATACTGT+TGG + chr2_1:7200079-7200098 Msa0191570:CDS 50.0%
GAGCTAGCACAAGCAGCATT+CGG + chr2_1:7200174-7200193 Msa0191570:CDS 50.0%
GGCCATTACTTACTCCACCA+TGG + chr2_1:7200735-7200754 Msa0191570:CDS 50.0%
ACCTTGGCTCCTTTCCACAT+TGG - chr2_1:7201048-7201067 None:intergenic 50.0%
CAAAAGCCTCCAATGGCCAT+AGG - chr2_1:7201102-7201121 None:intergenic 50.0%
! CTATGGCCATTGGAGGCTTT+TGG + chr2_1:7201100-7201119 Msa0191570:CDS 50.0%
! ATTGGAGGCTTTTGGGCCTA+CGG + chr2_1:7201108-7201127 Msa0191570:CDS 50.0%
GTTTGTTCGACTGGTGTAGC+CGG - chr2_1:7201769-7201788 None:intergenic 50.0%
GACCGAACCCATATTGAGCA+AGG - chr2_1:7201795-7201814 None:intergenic 50.0%
! TGCTCAATATGGGTTCGGTC+AGG + chr2_1:7201795-7201814 Msa0191570:CDS 50.0%
CCAGCAAGACTTGAGAGGAA+TGG - chr2_1:7201870-7201889 None:intergenic 50.0%
CCATTCCTCTCAAGTCTTGC+TGG + chr2_1:7201867-7201886 Msa0191570:CDS 50.0%
!! AGCTTGGCCTTTTCCATTGG+AGG + chr2_1:7202023-7202042 Msa0191570:CDS 50.0%
!! CATGTGTTGGTGTTGGACAC+TGG - chr2_1:7202151-7202170 None:intergenic 50.0%
GTGTCCAACACCAACACATG+TGG + chr2_1:7202151-7202170 Msa0191570:three_prime_UTR 50.0%
! AGAAGGTGCAGCACATGATG+TGG + chr2_1:7202529-7202548 Msa0191570:three_prime_UTR 50.0%
TAATTGACCAAGTCGTGGGG+CGG - chr2_1:7202879-7202898 Msa0191580:intron 50.0%
AGTACGTGGTGTGGGAGTGA+GGG + chr2_1:7196199-7196218 Msa0191570:intron 55.0%
CTTGGAGGGAAACCAACACG+AGG + chr2_1:7196410-7196429 Msa0191570:CDS 55.0%
TTCCACTCCACTCCCCCTAA+TGG + chr2_1:7197236-7197255 Msa0191570:intron 55.0%
TGGCAAAGGGGCCATTGTGT+TGG + chr2_1:7199260-7199279 Msa0191570:intron 55.0%
CAGCTGCATGAAGCAGTTCC+AGG + chr2_1:7200129-7200148 Msa0191570:CDS 55.0%
AACAACGGTGGAGTGGTACC+TGG + chr2_1:7200630-7200649 Msa0191570:CDS 55.0%
!! AGAGAGCACCCAAACCATGG+TGG - chr2_1:7200752-7200771 None:intergenic 55.0%
!! CACAGAGAGCACCCAAACCA+TGG - chr2_1:7200755-7200774 None:intergenic 55.0%
TGCTCTCTGTGAGCCAACAG+AGG + chr2_1:7200764-7200783 Msa0191570:CDS 55.0%
AGATAGAGGGTGGCCTCTGT+TGG - chr2_1:7200780-7200799 None:intergenic 55.0%
GCCGTCAACGTTTAAGCACC+CGG + chr2_1:7201014-7201033 Msa0191570:CDS 55.0%
GCCGGGTGCTTAAACGTTGA+CGG - chr2_1:7201018-7201037 None:intergenic 55.0%
TTCCACATTGGCACACGAGC+CGG - chr2_1:7201036-7201055 None:intergenic 55.0%
GCTCGTGTGCCAATGTGGAA+AGG + chr2_1:7201036-7201055 Msa0191570:CDS 55.0%
GCCAATGTGGAAAGGAGCCA+AGG + chr2_1:7201044-7201063 Msa0191570:CDS 55.0%
GTAGGCCCAAAAGCCTCCAA+TGG - chr2_1:7201109-7201128 None:intergenic 55.0%
! TTGGAGGCTTTTGGGCCTAC+GGG + chr2_1:7201109-7201128 Msa0191570:CDS 55.0%
! GCAAGGACGGTTTGTTCGAC+TGG - chr2_1:7201778-7201797 None:intergenic 55.0%
GGTGGAGGAAGGATCATCTG+TGG - chr2_1:7202632-7202651 Msa0191580:CDS 55.0%
CGTGGGGCGGTTTAGTAACA+TGG - chr2_1:7202866-7202885 Msa0191580:intron 55.0%
TACTAAACCGCCCCACGACT+TGG + chr2_1:7202869-7202888 Msa0191570:three_prime_UTR 55.0%
GAGTACGTGGTGTGGGAGTG+AGG + chr2_1:7196198-7196217 Msa0191570:intron 60.0%
!! GGTGGCCCTGGATTGGTTGT+AGG + chr2_1:7196293-7196312 Msa0191570:intron 60.0%
TCCACATTGGCACACGAGCC+GGG - chr2_1:7201035-7201054 None:intergenic 60.0%
AAGCGGGGTCAGGTGAAGCT+TGG - chr2_1:7202596-7202615 Msa0191580:CDS 60.0%
AGCTTCACCTGACCCCGCTT+CGG + chr2_1:7202596-7202615 Msa0191570:three_prime_UTR 60.0%
ACCTGACCCCGCTTCGGAAT+CGG + chr2_1:7202602-7202621 Msa0191570:three_prime_UTR 60.0%
GGCCATTAGGGGGAGTGGAG+TGG - chr2_1:7197241-7197260 None:intergenic 65.0%
GTTGGGGCCATTAGGGGGAG+TGG - chr2_1:7197246-7197265 None:intergenic 65.0%
! ACCCGGCTCGTGTGCCAATG+TGG + chr2_1:7201031-7201050 Msa0191570:CDS 65.0%
TCCGATTCCGAAGCGGGGTC+AGG - chr2_1:7202606-7202625 Msa0191580:CDS 65.0%
GACCCCGCTTCGGAATCGGA+CGG + chr2_1:7202606-7202625 Msa0191570:three_prime_UTR 65.0%
TGGCCGTCCGATTCCGAAGC+GGG - chr2_1:7202612-7202631 Msa0191580:CDS 65.0%
GTGGCCGTCCGATTCCGAAG+CGG - chr2_1:7202613-7202632 Msa0191580:CDS 65.0%
GGCCGTCCGATTCCGAAGCG+GGG - chr2_1:7202611-7202630 Msa0191580:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 7195990 7202937 7195990 ID=Msa0191570;Name=Msa0191570
chr2_1 mRNA 7195990 7202937 7195990 ID=Msa0191570-mRNA-1;Parent=Msa0191570;Name=Msa0191570-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.66|0.71|0.71|1|1|7|837|583
chr2_1 exon 7195990 7196024 7195990 ID=Msa0191570-mRNA-1:exon:3285;Parent=Msa0191570-mRNA-1
chr2_1 exon 7196315 7196456 7196315 ID=Msa0191570-mRNA-1:exon:3286;Parent=Msa0191570-mRNA-1
chr2_1 exon 7198022 7198416 7198022 ID=Msa0191570-mRNA-1:exon:3287;Parent=Msa0191570-mRNA-1
chr2_1 exon 7200062 7200195 7200062 ID=Msa0191570-mRNA-1:exon:3288;Parent=Msa0191570-mRNA-1
chr2_1 exon 7200485 7200912 7200485 ID=Msa0191570-mRNA-1:exon:3289;Parent=Msa0191570-mRNA-1
chr2_1 exon 7201006 7201137 7201006 ID=Msa0191570-mRNA-1:exon:3290;Parent=Msa0191570-mRNA-1
chr2_1 exon 7201615 7202937 7201615 ID=Msa0191570-mRNA-1:exon:3291;Parent=Msa0191570-mRNA-1
chr2_1 CDS 7195990 7196024 7195990 ID=Msa0191570-mRNA-1:cds;Parent=Msa0191570-mRNA-1
chr2_1 CDS 7196315 7196456 7196315 ID=Msa0191570-mRNA-1:cds;Parent=Msa0191570-mRNA-1
chr2_1 CDS 7198022 7198416 7198022 ID=Msa0191570-mRNA-1:cds;Parent=Msa0191570-mRNA-1
chr2_1 CDS 7200062 7200195 7200062 ID=Msa0191570-mRNA-1:cds;Parent=Msa0191570-mRNA-1
chr2_1 CDS 7200485 7200912 7200485 ID=Msa0191570-mRNA-1:cds;Parent=Msa0191570-mRNA-1
chr2_1 CDS 7201006 7201137 7201006 ID=Msa0191570-mRNA-1:cds;Parent=Msa0191570-mRNA-1
chr2_1 CDS 7201615 7202100 7201615 ID=Msa0191570-mRNA-1:cds;Parent=Msa0191570-mRNA-1
chr2_1 three_prime_UTR 7202101 7202937 7202101 ID=Msa0191570-mRNA-1:three_prime_utr;Parent=Msa0191570-mRNA-1
Gene Sequence

>Msa0191570

ATGTCGTCTTGGTGGAGCGAGATTTCGTTACTTGGGTGTTCCCAAGATAGTGACTTCCGGTCTTGGAAGTTTGACTTGGGCGAAATTTACTCTGTTAGTTTTGGCATATTCGTTCCTTTCAGTGGCCTATCTTGGAGGGAAACCAACACGAGGATGAGATCCATATTACGGCCAAAGGTGATTTTAGTGATGGAGGAGAGACCAGAGACAGAGCTGATATCAATACCAGCAACACCAAGAGTGTCAACACCAGAGATACTGACACCATCAGGACAAAGGTCACCAAGACAAGGATCAAAGGAAGCTAAATCATCAAATGCATGGACACCAACATCTTTTATATCACCAAGGTTTTTGAGTCCTATAGGGACACCAATGAAAAGGGTACTTATAAACATGAAGGGTTATTTGGAAGATGTTGGTCATCTTACCAAGCTTAACCCTCAAGATGCATGGCTTCCTATAACTGAGTCTCGGAATGGAAATGCTCATTATTCTACTTTTCATAATCTCAATGCTGGTGTTGGTTTTCAGGCTCTTGTTTTGCCTGTTGCTTTTGCTTATCTTGGCTGGAGTTGGGGAATTATTTCCTTAACCGTGGCATACTGTTGGCAACTTTACACCTTATGGATTTTGGTTCAGCTGCATGAAGCAGTTCCAGGTAAAAGGTACAACAGATATGTGGAGCTAGCACAAGCAGCATTCGGGGAAAGATTAGGAGTATGGCTTGCTCTTTTCCCAACTGTTTATTTATCAGCAGGAACTGCAACAGCTTTGATTCTCGTTGGAGGGGAGACCATGAAACTGTTCTTTCAAATAGTTTGTGGTCCAACATGTACCTCAAATCCTTTAACAACGGTGGAGTGGTACCTGGTTTTCACTTCTCTATCTATTGTTCTTTCTCAGCTTCCAAACCTCAATTCAATTGCAGGACTGTCACTAATAGGAGCTGTTACGGCCATTACTTACTCCACCATGGTTTGGGTGCTCTCTGTGAGCCAACAGAGGCCACCCTCTATCTCTTATGAACCCTTATCGCTGGCAAAACCTTCTTCTTCATTATTTCTAGCATTGAATGCACTTGGAATTATAGCATTTTCTTTTAGAGGTCACAATTTGGTCCTAGAAATTCAGGCCACAATGCCGTCAACGTTTAAGCACCCGGCTCGTGTGCCAATGTGGAAAGGAGCCAAGGTTGCTTATTTCTTTATTGCAATGTGCTTATTCCCTATGGCCATTGGAGGCTTTTGGGCCTACGGGAACCAAATGCCTAATGGAGGGATTTTGACAGCTCTATATGCATTTCACAGTCATGACATTTCAAGAGGAATTCTAGCCTTAGCATTCCTTCTTGTAGTGTTCAGCTGTTTGAGCAGTTTTCAGATATACTCAATGCCTGCTTTCGACAGTTTTGAAGCCGGCTACACCAGTCGAACAAACCGTCCTTGCTCAATATGGGTTCGGTCAGGTTTTAGAGTTTTCTTTGGATTTGTCTCATTCTTCATAGGAGTGGCACTTCCATTCCTCTCAAGTCTTGCTGGTTTGTTAGGAGGACTCACTCTTCCAGTTACTTTTGCATATCCTTGTTTCATGTGGGTTCTTATTAAACAGCCAACAAAATATAGCTTCAGTTGGTATTTCAATTGGATTCTTGGTTGGTTAGGTGTTGCTTTCAGCTTGGCCTTTTCCATTGGAGGTATTTGGAGTATGGTCAACGATGGACTCAAGTTGAAATTCTTCAAGCCCAATTAA
Protein sequence

>Msa0191570

MSSWWSEISLLGCSQDSDFRSWKFDLGEIYSVSFGIFVPFSGLSWRETNTRMRSILRPKVILVMEERPETELISIPATPRVSTPEILTPSGQRSPRQGSKEAKSSNAWTPTSFISPRFLSPIGTPMKRVLINMKGYLEDVGHLTKLNPQDAWLPITESRNGNAHYSTFHNLNAGVGFQALVLPVAFAYLGWSWGIISLTVAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATALILVGGETMKLFFQIVCGPTCTSNPLTTVEWYLVFTSLSIVLSQLPNLNSIAGLSLIGAVTAITYSTMVWVLSVSQQRPPSISYEPLSLAKPSSSLFLALNALGIIAFSFRGHNLVLEIQATMPSTFKHPARVPMWKGAKVAYFFIAMCLFPMAIGGFWAYGNQMPNGGILTALYAFHSHDISRGILALAFLLVVFSCLSSFQIYSMPAFDSFEAGYTSRTNRPCSIWVRSGFRVFFGFVSFFIGVALPFLSSLAGLLGGLTLPVTFAYPCFMWVLIKQPTKYSFSWYFNWILGWLGVAFSLAFSIGGIWSMVNDGLKLKFFKPN*