AlfalfaGEDB | Msa0382770

M. sativa cultivar zhongmu-4 / Msa0382770

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00641.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0382770	XP_003603428.2	97.076	171	4	1	1	171	1	170	2.37e-104	306

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0382770	G7JB51	97.076	171	4	1	1	171	1	170	1.13e-104	306

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003080	Msa0382770	0.820831	5.572832e-53	-8.615850e-47
Msa0025580	Msa0382770	0.851881	6.649450e-61	-8.615850e-47
Msa0029960	Msa0382770	0.821527	3.851204e-53	-8.615850e-47
Msa0032980	Msa0382770	0.807527	4.839236e-50	-8.615850e-47
Msa0033780	Msa0382770	0.811760	5.959620e-51	-8.615850e-47
Msa0035340	Msa0382770	0.801195	1.009674e-48	-8.615850e-47
Msa0035380	Msa0382770	0.813559	2.407464e-51	-8.615850e-47
Msa0050660	Msa0382770	0.832630	8.473185e-56	-8.615850e-47
Msa0050700	Msa0382770	0.832383	9.752376e-56	-8.615850e-47
Msa0050790	Msa0382770	0.819925	8.987911e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0382770	MtrunA17_Chr3g0138031	97.076	171	4	1	1	171	1	170	2.18e-108	306
Msa0382770	MtrunA17_Chr4g0003701	61.111	162	47	4	1	162	1	146	1.64e-55	172
Msa0382770	MtrunA17_Chr4g0063351	43.030	165	51	6	5	161	6	135	3.60e-33	114
Msa0382770	MtrunA17_Chr2g0306881	36.943	157	58	3	5	160	6	122	6.33e-31	108

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0382770	AT3G15680.2	60.819	171	58	5	1	169	1	164	4.49e-61	187
Msa0382770	AT3G15680.1	60.819	171	58	5	1	169	1	164	4.49e-61	187
Msa0382770	AT5G25490.2	62.791	172	50	5	1	164	1	166	1.43e-55	173
Msa0382770	AT5G25490.1	62.791	172	50	5	1	164	1	166	1.43e-55	173
Msa0382770	AT2G26695.1	40.764	157	65	5	5	161	6	134	2.05e-32	113
Msa0382770	AT2G26695.2	40.764	157	65	5	5	161	6	134	2.05e-32	113
Msa0382770	AT2G17975.1	30.769	169	80	6	3	157	5	150	4.69e-16	73.9

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Find 86 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAGCCACCAAAATCAA+CGG	0.591777	3_1:+85520501	None:intergenic
AAGAGTAATTGAGATTAAGG+TGG	0.559698	3_1:+85520850	None:intergenic
ACAGTACAATACCAGTCACC+AGG	0.642353	3_1:+85520421	None:intergenic
ACATCAGGGCCGGTGGTGAA+AGG	0.548866	3_1:+85520448	None:intergenic
ACCAGGACGGACATCAGGGC+CGG	0.576233	3_1:+85520438	None:intergenic
ACCGGCCCTGATGTCCGTCC+TGG	0.532481	3_1:-85520439	Msa0382770:CDS
ACTACCTTCCAAACTAAGTG+AGG	0.639319	3_1:-85520756	Msa0382770:intron
ACTCGCCCCGGCTGGAAATC+CGG	0.405258	3_1:-85520238	Msa0382770:CDS
AGAAGGTATCAATATCCTTA+GGG	0.509984	3_1:+85520341	None:intergenic
AGAATCTTGCCAACGATGTG+GGG	0.604150	3_1:-85520554	Msa0382770:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAGTAATTGAGATTAAGG+TGG	+	chr3_1:85519393-85519412	None:intergenic	30.0%
GAGAAGAGTAATTGAGATTA+AGG	+	chr3_1:85519396-85519415	None:intergenic	30.0%
TTTACTTACCTCACTTAGTT+TGG	+	chr3_1:85519495-85519514	None:intergenic	30.0%
ACATGACACTTATAATGAGA+CGG	+	chr3_1:85520130-85520149	None:intergenic	30.0%
TTGAGAAGTTCACGATAAAT+AGG	+	chr3_1:85520433-85520452	None:intergenic	30.0%
AAGAGTAATTGAGATTAAGG+TGG	+	chr3_1:85519393-85519412	None:intergenic	30.0%
GAGAAGAGTAATTGAGATTA+AGG	+	chr3_1:85519396-85519415	None:intergenic	30.0%
TTTACTTACCTCACTTAGTT+TGG	+	chr3_1:85519495-85519514	None:intergenic	30.0%
ACATGACACTTATAATGAGA+CGG	+	chr3_1:85520130-85520149	None:intergenic	30.0%
TTGAGAAGTTCACGATAAAT+AGG	+	chr3_1:85520433-85520452	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	85519370	85520892	85519370	ID=Msa0382770;Name=Msa0382770
chr3_1	mRNA	85519370	85520892	85519370	ID=Msa0382770-mRNA-1;Parent=Msa0382770;Name=Msa0382770-mRNA-1;_AED=0.12;_eAED=0.12;_QI=150\|1\|1\|1\|0.33\|0.25\|4\|283\|171
chr3_1	exon	85519370	85519639	85519370	ID=Msa0382770-mRNA-1:exon:22450;Parent=Msa0382770-mRNA-1
chr3_1	exon	85519806	85519918	85519806	ID=Msa0382770-mRNA-1:exon:22449;Parent=Msa0382770-mRNA-1
chr3_1	exon	85520220	85520649	85520220	ID=Msa0382770-mRNA-1:exon:22448;Parent=Msa0382770-mRNA-1
chr3_1	exon	85520757	85520892	85520757	ID=Msa0382770-mRNA-1:exon:22447;Parent=Msa0382770-mRNA-1
chr3_1	five_prime_UTR	85520757	85520892	85520757	ID=Msa0382770-mRNA-1:five_prime_utr;Parent=Msa0382770-mRNA-1
chr3_1	five_prime_UTR	85520636	85520649	85520636	ID=Msa0382770-mRNA-1:five_prime_utr;Parent=Msa0382770-mRNA-1
chr3_1	CDS	85520220	85520635	85520220	ID=Msa0382770-mRNA-1:cds;Parent=Msa0382770-mRNA-1
chr3_1	CDS	85519819	85519918	85519819	ID=Msa0382770-mRNA-1:cds;Parent=Msa0382770-mRNA-1
chr3_1	three_prime_UTR	85519806	85519818	85519806	ID=Msa0382770-mRNA-1:three_prime_utr;Parent=Msa0382770-mRNA-1
chr3_1	three_prime_UTR	85519370	85519639	85519370	ID=Msa0382770-mRNA-1:three_prime_utr;Parent=Msa0382770-mRNA-1

Gene Sequence

>Msa0382770

ATGAGCAGACCAGGAGATTGGAACTGCAGGACATGCAACCACCTCAACTTTCAAAGAAGAGAATCTTGCCAACGATGTGGGGAGTCAAGAATGATTTCTGGCGGCGGCGGCGCCGTTGATTTTGGTGGCTCCTTTCTTGGTGGAAGAGGCTCTAGCTCCCCTTTTCCTTTCACCACCGGCCCTGATGTCCGTCCTGGTGACTGGTATTGTACTGTTGGAAACTGTGGAGCTCACAACTTTGCCAGCCGCTCCAGCTGCTTCAAATGTGGTGCCCCTAAGGATATTGATACCTTCTCCTCTGACTCCTCAGACATGCCACGATTATTGAGATCACCATACGGTTTTGGAGGAGGCAGCGCCGGTGGTGGTGCCTCCACTCGCCCCGGCTGGAAATCCGGTGACTGGATATGCACCAGGTCTGGGTGTAACGAGCATAACTTCGCCAATAGAATGGAATGCTACCGATGCAACGGTCCAAGGGAATCTAGTACTGGAAGATCTTCCTATTTATCGTGA

Protein sequence

>Msa0382770

MSRPGDWNCRTCNHLNFQRRESCQRCGESRMISGGGGAVDFGGSFLGGRGSSSPFPFTTGPDVRPGDWYCTVGNCGAHNFASRSSCFKCGAPKDIDTFSSDSSDMPRLLRSPYGFGGGSAGGGASTRPGWKSGDWICTRSGCNEHNFANRMECYRCNGPRESSTGRSSYLS*