Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382770 | XP_003603428.2 | 97.076 | 171 | 4 | 1 | 1 | 171 | 1 | 170 | 2.37e-104 | 306 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382770 | G7JB51 | 97.076 | 171 | 4 | 1 | 1 | 171 | 1 | 170 | 1.13e-104 | 306 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003080 | Msa0382770 | 0.820831 | 5.572832e-53 | -8.615850e-47 |
| Msa0025580 | Msa0382770 | 0.851881 | 6.649450e-61 | -8.615850e-47 |
| Msa0029960 | Msa0382770 | 0.821527 | 3.851204e-53 | -8.615850e-47 |
| Msa0032980 | Msa0382770 | 0.807527 | 4.839236e-50 | -8.615850e-47 |
| Msa0033780 | Msa0382770 | 0.811760 | 5.959620e-51 | -8.615850e-47 |
| Msa0035340 | Msa0382770 | 0.801195 | 1.009674e-48 | -8.615850e-47 |
| Msa0035380 | Msa0382770 | 0.813559 | 2.407464e-51 | -8.615850e-47 |
| Msa0050660 | Msa0382770 | 0.832630 | 8.473185e-56 | -8.615850e-47 |
| Msa0050700 | Msa0382770 | 0.832383 | 9.752376e-56 | -8.615850e-47 |
| Msa0050790 | Msa0382770 | 0.819925 | 8.987911e-53 | -8.615850e-47 |
| Msa0057540 | Msa0382770 | 0.803616 | 3.202112e-49 | -8.615850e-47 |
| Msa0067060 | Msa0382770 | 0.809814 | 1.571068e-50 | -8.615850e-47 |
| Msa0073120 | Msa0382770 | 0.819883 | 9.192533e-53 | -8.615850e-47 |
| Msa0091350 | Msa0382770 | 0.816672 | 4.901846e-52 | -8.615850e-47 |
| Msa0091360 | Msa0382770 | 0.803950 | 2.729784e-49 | -8.615850e-47 |
| Msa0093860 | Msa0382770 | 0.827353 | 1.639524e-54 | -8.615850e-47 |
| Msa0098410 | Msa0382770 | 0.808454 | 3.073215e-50 | -8.615850e-47 |
| Msa0115550 | Msa0382770 | 0.818659 | 1.746949e-52 | -8.615850e-47 |
| Msa0121330 | Msa0382770 | 0.849422 | 3.267909e-60 | -8.615850e-47 |
| Msa0127340 | Msa0382770 | 0.806665 | 7.365743e-50 | -8.615850e-47 |
| Msa0128570 | Msa0382770 | 0.806144 | 9.488001e-50 | -8.615850e-47 |
| Msa0140130 | Msa0382770 | 0.813068 | 3.086391e-51 | -8.615850e-47 |
| Msa0140380 | Msa0382770 | 0.808345 | 3.241269e-50 | -8.615850e-47 |
| Msa0141640 | Msa0382770 | 0.821138 | 4.735388e-53 | -8.615850e-47 |
| Msa0146650 | Msa0382770 | 0.827025 | 1.964523e-54 | -8.615850e-47 |
| Msa0154620 | Msa0382770 | 0.802250 | 6.134256e-49 | -8.615850e-47 |
| Msa0161930 | Msa0382770 | 0.810219 | 1.285091e-50 | -8.615850e-47 |
| Msa0165830 | Msa0382770 | 0.806612 | 7.557716e-50 | -8.615850e-47 |
| Msa0166170 | Msa0382770 | 0.858548 | 7.639059e-63 | -8.615850e-47 |
| Msa0188610 | Msa0382770 | 0.806823 | 6.822356e-50 | -8.615850e-47 |
| Msa0191670 | Msa0382770 | 0.805766 | 1.139193e-49 | -8.615850e-47 |
| Msa0213610 | Msa0382770 | 0.802612 | 5.165539e-49 | -8.615850e-47 |
| Msa0367520 | Msa0382770 | 0.809527 | 1.811069e-50 | -8.615850e-47 |
| Msa0371190 | Msa0382770 | 0.810143 | 1.334497e-50 | -8.615850e-47 |
| Msa0373170 | Msa0382770 | 0.804223 | 2.394518e-49 | -8.615850e-47 |
| Msa0380540 | Msa0382770 | 0.814063 | 1.864219e-51 | -8.615850e-47 |
| Msa0381730 | Msa0382770 | 0.838291 | 3.137094e-57 | -8.615850e-47 |
| Msa0382740 | Msa0382770 | 0.982566 | 2.006899e-155 | -8.615850e-47 |
| Msa0382770 | Msa0389950 | 0.811870 | 5.639090e-51 | -8.615850e-47 |
| Msa0382770 | Msa0415140 | 0.825417 | 4.742357e-54 | -8.615850e-47 |
| Msa0382770 | Msa0415450 | 0.818127 | 2.304533e-52 | -8.615850e-47 |
| Msa0382770 | Msa0420670 | 0.830933 | 2.221533e-55 | -8.615850e-47 |
| Msa0382770 | Msa0421750 | 0.801226 | 9.950381e-49 | -8.615850e-47 |
| Msa0382770 | Msa0430080 | 0.825985 | 3.477506e-54 | -8.615850e-47 |
| Msa0382770 | Msa0430170 | 0.824343 | 8.496233e-54 | -8.615850e-47 |
| Msa0382770 | Msa0430480 | 0.814347 | 1.613279e-51 | -8.615850e-47 |
| Msa0382770 | Msa0431200 | 0.832306 | 1.019280e-55 | -8.615850e-47 |
| Msa0382770 | Msa0443410 | 0.832189 | 1.089270e-55 | -8.615850e-47 |
| Msa0382770 | Msa0460070 | 0.820369 | 7.114006e-53 | -8.615850e-47 |
| Msa0382770 | Msa0466520 | 0.837991 | 3.748453e-57 | -8.615850e-47 |
| Msa0382770 | Msa0467690 | 0.805194 | 1.501320e-49 | -8.615850e-47 |
| Msa0382770 | Msa0476280 | 0.842201 | 2.988470e-58 | -8.615850e-47 |
| Msa0382770 | Msa0482080 | 0.813702 | 2.239087e-51 | -8.615850e-47 |
| Msa0382770 | Msa0500450 | 0.821248 | 4.466536e-53 | -8.615850e-47 |
| Msa0382770 | Msa0512530 | 0.828415 | 9.104607e-55 | -8.615850e-47 |
| Msa0382770 | Msa0513080 | 0.820880 | 5.428600e-53 | -8.615850e-47 |
| Msa0382770 | Msa0513560 | 0.813635 | 2.316070e-51 | -8.615850e-47 |
| Msa0382770 | Msa0520260 | 0.834341 | 3.170290e-56 | -8.615850e-47 |
| Msa0382770 | Msa0520870 | 0.815608 | 8.471038e-52 | -8.615850e-47 |
| Msa0382770 | Msa0521320 | 0.816130 | 6.478951e-52 | -8.615850e-47 |
| Msa0382770 | Msa0524320 | 0.811970 | 5.361966e-51 | -8.615850e-47 |
| Msa0382770 | Msa0524430 | 0.812285 | 4.579180e-51 | -8.615850e-47 |
| Msa0382770 | Msa0524520 | 0.804888 | 1.739799e-49 | -8.615850e-47 |
| Msa0382770 | Msa0524800 | 0.969927 | 7.577446e-131 | -8.615850e-47 |
| Msa0382770 | Msa0525000 | 0.981823 | 1.547495e-153 | -8.615850e-47 |
| Msa0382770 | Msa0534100 | 0.839348 | 1.672021e-57 | -8.615850e-47 |
| Msa0382770 | Msa0537990 | 0.819877 | 9.218589e-53 | -8.615850e-47 |
| Msa0382770 | Msa0541300 | 0.814556 | 1.450764e-51 | -8.615850e-47 |
| Msa0382770 | Msa0541310 | 0.812557 | 3.992986e-51 | -8.615850e-47 |
| Msa0382770 | Msa0561560 | 0.843124 | 1.699180e-58 | -8.615850e-47 |
| Msa0382770 | Msa0563740 | 0.819640 | 1.044412e-52 | -8.615850e-47 |
| Msa0382770 | Msa0563940 | 0.839868 | 1.224415e-57 | -8.615850e-47 |
| Msa0382770 | Msa0563980 | 0.807578 | 4.721251e-50 | -8.615850e-47 |
| Msa0382770 | Msa0570010 | 0.813851 | 2.076208e-51 | -8.615850e-47 |
| Msa0382770 | Msa0571620 | 0.814141 | 1.791772e-51 | -8.615850e-47 |
| Msa0382770 | Msa0577280 | 0.815867 | 7.418373e-52 | -8.615850e-47 |
| Msa0382770 | Msa0577330 | 0.818430 | 1.967930e-52 | -8.615850e-47 |
| Msa0382770 | Msa0580200 | 0.807161 | 5.786769e-50 | -8.615850e-47 |
| Msa0382770 | Msa0585340 | 0.811569 | 6.556334e-51 | -8.615850e-47 |
| Msa0382770 | Msa0590200 | 0.828316 | 9.619950e-55 | -8.615850e-47 |
| Msa0382770 | Msa0606100 | 0.844820 | 5.965534e-59 | -8.615850e-47 |
| Msa0382770 | Msa0612520 | 0.828515 | 8.612558e-55 | -8.615850e-47 |
| Msa0382770 | Msa0620500 | 0.819575 | 1.081034e-52 | -8.615850e-47 |
| Msa0382770 | Msa0622920 | 0.814873 | 1.234095e-51 | -8.615850e-47 |
| Msa0382770 | Msa0630660 | 0.832806 | 7.662972e-56 | -8.615850e-47 |
| Msa0382770 | Msa0645340 | 0.826837 | 2.178967e-54 | -8.615850e-47 |
| Msa0382770 | Msa0647050 | 0.838868 | 2.226390e-57 | -8.615850e-47 |
| Msa0382770 | Msa0648760 | 0.802268 | 6.082184e-49 | -8.615850e-47 |
| Msa0382770 | Msa0653160 | 0.821871 | 3.206516e-53 | -8.615850e-47 |
| Msa0382770 | Msa0654740 | 0.816395 | 5.652850e-52 | -8.615850e-47 |
| Msa0382770 | Msa0668900 | 0.851989 | 6.192543e-61 | -8.615850e-47 |
| Msa0382770 | Msa0687090 | 0.844303 | 8.219257e-59 | -8.615850e-47 |
| Msa0382770 | Msa0691270 | 0.815679 | 8.171029e-52 | -8.615850e-47 |
| Msa0382770 | Msa0695560 | 0.808515 | 2.981962e-50 | -8.615850e-47 |
| Msa0382770 | Msa0698730 | 0.813378 | 2.638672e-51 | -8.615850e-47 |
| Msa0382770 | Msa0700460 | 0.800464 | 1.423443e-48 | -8.615850e-47 |
| Msa0382770 | Msa0711010 | 0.841336 | 5.055712e-58 | -8.615850e-47 |
| Msa0382770 | Msa0713960 | 0.831570 | 1.548619e-55 | -8.615850e-47 |
| Msa0382770 | Msa0718040 | 0.805216 | 1.485593e-49 | -8.615850e-47 |
| Msa0382770 | Msa0736890 | 0.800911 | 1.154291e-48 | -8.615850e-47 |
| Msa0382770 | Msa0740710 | 0.802107 | 6.564325e-49 | -8.615850e-47 |
| Msa0382770 | Msa0747740 | 0.816116 | 6.525930e-52 | -8.615850e-47 |
| Msa0382770 | Msa0778550 | 0.818222 | 2.194162e-52 | -8.615850e-47 |
| Msa0382770 | Msa0835350 | 0.845604 | 3.661038e-59 | -8.615850e-47 |
| Msa0382770 | Msa0901150 | 0.820293 | 7.403053e-53 | -8.615850e-47 |
| Msa0382770 | Msa0909760 | 0.841175 | 5.571011e-58 | -8.615850e-47 |
| Msa0382770 | Msa0931590 | 0.800175 | 1.630648e-48 | -8.615850e-47 |
| Msa0382770 | Msa0966710 | 0.833502 | 5.139879e-56 | -8.615850e-47 |
| Msa0382770 | Msa1000970 | 0.836524 | 8.897146e-57 | -8.615850e-47 |
| Msa0382770 | Msa1008670 | 0.804163 | 2.464499e-49 | -8.615850e-47 |
| Msa0382770 | Msa1008680 | 0.802621 | 5.144121e-49 | -8.615850e-47 |
| Msa0382770 | Msa1033920 | 0.819665 | 1.030869e-52 | -8.615850e-47 |
| Msa0382770 | Msa1042160 | 0.820559 | 6.434363e-53 | -8.615850e-47 |
| Msa0382770 | Msa1042190 | 0.817293 | 3.555062e-52 | -8.615850e-47 |
| Msa0382770 | Msa1060900 | 0.814109 | 1.821497e-51 | -8.615850e-47 |
| Msa0382770 | Msa1070210 | 0.808238 | 3.417310e-50 | -8.615850e-47 |
| Msa0382770 | Msa1076020 | 0.802806 | 4.709779e-49 | -8.615850e-47 |
| Msa0382770 | Msa1076820 | 0.828209 | 1.020881e-54 | -8.615850e-47 |
| Msa0382770 | Msa1078820 | 0.800106 | 1.684168e-48 | -8.615850e-47 |
| Msa0382770 | Msa1078880 | 0.844993 | 5.358787e-59 | -8.615850e-47 |
| Msa0382770 | Msa1078970 | 0.846589 | 1.975633e-59 | -8.615850e-47 |
| Msa0382770 | Msa1079640 | 0.813568 | 2.395963e-51 | -8.615850e-47 |
| Msa0382770 | Msa1082380 | 0.833735 | 4.496924e-56 | -8.615850e-47 |
| Msa0382770 | Msa1116190 | 0.807220 | 5.622277e-50 | -8.615850e-47 |
| Msa0382770 | Msa1116660 | 0.842801 | 2.070875e-58 | -8.615850e-47 |
| Msa0382770 | Msa1116740 | 0.825962 | 3.521619e-54 | -8.615850e-47 |
| Msa0382770 | Msa1124470 | 0.800108 | 1.682520e-48 | -8.615850e-47 |
| Msa0382770 | Msa1127280 | 0.813272 | 2.784014e-51 | -8.615850e-47 |
| Msa0382770 | Msa1139050 | 0.802520 | 5.395376e-49 | -8.615850e-47 |
| Msa0382770 | Msa1149450 | 0.804421 | 2.178100e-49 | -8.615850e-47 |
| Msa0382770 | Msa1162880 | 0.845830 | 3.178433e-59 | -8.615850e-47 |
| Msa0382770 | Msa1165480 | 0.821499 | 3.909728e-53 | -8.615850e-47 |
| Msa0382770 | Msa1167470 | 0.813612 | 2.344064e-51 | -8.615850e-47 |
| Msa0382770 | Msa1169190 | 0.842356 | 2.718436e-58 | -8.615850e-47 |
| Msa0382770 | Msa1209320 | 0.821262 | 4.432834e-53 | -8.615850e-47 |
| Msa0382770 | Msa1212700 | 0.820720 | 5.909891e-53 | -8.615850e-47 |
| Msa0382770 | Msa1212920 | 0.821492 | 3.922375e-53 | -8.615850e-47 |
| Msa0382770 | Msa1213830 | 0.819476 | 1.138356e-52 | -8.615850e-47 |
| Msa0382770 | Msa1214350 | 0.837209 | 5.947996e-57 | -8.615850e-47 |
| Msa0382770 | Msa1215980 | 0.821231 | 4.507877e-53 | -8.615850e-47 |
| Msa0382770 | Msa1240770 | 0.803580 | 3.257379e-49 | -8.615850e-47 |
| Msa0382770 | Msa1254540 | 0.818474 | 1.923801e-52 | -8.615850e-47 |
| Msa0382770 | Msa1260710 | 0.817457 | 3.265733e-52 | -8.615850e-47 |
| Msa0382770 | Msa1262570 | 0.812733 | 3.654222e-51 | -8.615850e-47 |
| Msa0382770 | Msa1263740 | 0.810427 | 1.158821e-50 | -8.615850e-47 |
| Msa0382770 | Msa1263780 | 0.832632 | 8.460298e-56 | -8.615850e-47 |
| Msa0382770 | Msa1268630 | 0.817117 | 3.894332e-52 | -8.615850e-47 |
| Msa0382770 | Msa1299980 | 0.835297 | 1.821767e-56 | -8.615850e-47 |
| Msa0382770 | Msa1300460 | 0.808855 | 2.522867e-50 | -8.615850e-47 |
| Msa0382770 | Msa1331650 | 0.820755 | 5.800600e-53 | -8.615850e-47 |
| Msa0382770 | Msa1339170 | 0.820800 | 5.663557e-53 | -8.615850e-47 |
| Msa0382770 | Msa1342810 | 0.832219 | 1.070878e-55 | -8.615850e-47 |
| Msa0382770 | Msa1359980 | 0.828481 | 8.779720e-55 | -8.615850e-47 |
| Msa0382770 | Msa1361930 | 0.821837 | 3.264748e-53 | -8.615850e-47 |
| Msa0382770 | Msa1364410 | 0.836002 | 1.207677e-56 | -8.615850e-47 |
| Msa0382770 | Msa1367840 | 0.803241 | 3.828891e-49 | -8.615850e-47 |
| Msa0382770 | Msa1377530 | 0.807644 | 4.570331e-50 | -8.615850e-47 |
| Msa0382770 | Msa1383310 | 0.823897 | 1.081646e-53 | -8.615850e-47 |
| Msa0382770 | Msa1384460 | 0.800839 | 1.194046e-48 | -8.615850e-47 |
| Msa0382770 | Msa1400010 | 0.836680 | 8.120381e-57 | -8.615850e-47 |
| Msa0382770 | Msa1404150 | 0.809290 | 2.035970e-50 | -8.615850e-47 |
| Msa0382770 | Msa1406720 | 0.841344 | 5.028953e-58 | -8.615850e-47 |
| Msa0382770 | Msa1409410 | 0.816170 | 6.347562e-52 | -8.615850e-47 |
| Msa0382770 | Msa1424590 | 0.801121 | 1.045418e-48 | -8.615850e-47 |
| Msa0382770 | Msa1434640 | 0.835585 | 1.540347e-56 | -8.615850e-47 |
| Msa0382770 | Msa1440630 | 0.820363 | 7.137105e-53 | -8.615850e-47 |
| Msa0270340 | Msa0382770 | 0.802781 | 4.767038e-49 | -8.615850e-47 |
| Msa0341680 | Msa0382770 | 0.816092 | 6.609356e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382770 | MtrunA17_Chr3g0138031 | 97.076 | 171 | 4 | 1 | 1 | 171 | 1 | 170 | 2.18e-108 | 306 |
| Msa0382770 | MtrunA17_Chr4g0003701 | 61.111 | 162 | 47 | 4 | 1 | 162 | 1 | 146 | 1.64e-55 | 172 |
| Msa0382770 | MtrunA17_Chr4g0063351 | 43.030 | 165 | 51 | 6 | 5 | 161 | 6 | 135 | 3.60e-33 | 114 |
| Msa0382770 | MtrunA17_Chr2g0306881 | 36.943 | 157 | 58 | 3 | 5 | 160 | 6 | 122 | 6.33e-31 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382770 | AT3G15680.2 | 60.819 | 171 | 58 | 5 | 1 | 169 | 1 | 164 | 4.49e-61 | 187 |
| Msa0382770 | AT3G15680.1 | 60.819 | 171 | 58 | 5 | 1 | 169 | 1 | 164 | 4.49e-61 | 187 |
| Msa0382770 | AT5G25490.2 | 62.791 | 172 | 50 | 5 | 1 | 164 | 1 | 166 | 1.43e-55 | 173 |
| Msa0382770 | AT5G25490.1 | 62.791 | 172 | 50 | 5 | 1 | 164 | 1 | 166 | 1.43e-55 | 173 |
| Msa0382770 | AT2G26695.1 | 40.764 | 157 | 65 | 5 | 5 | 161 | 6 | 134 | 2.05e-32 | 113 |
| Msa0382770 | AT2G26695.2 | 40.764 | 157 | 65 | 5 | 5 | 161 | 6 | 134 | 2.05e-32 | 113 |
| Msa0382770 | AT2G17975.1 | 30.769 | 169 | 80 | 6 | 3 | 157 | 5 | 150 | 4.69e-16 | 73.9 |
Find 86 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCGGCGGCGCCGTTGATTT+TGG | 0.178200 | 3_1:-85520511 | Msa0382770:CDS |
| AGGAGGGACTTGAATAATTT+TGG | 0.217231 | 3_1:-85520884 | None:intergenic |
| CTCTCTCAATTATCTCTTCT+TGG | 0.242787 | 3_1:+85519608 | None:intergenic |
| GAGAAGAGTAATTGAGATTA+AGG | 0.253953 | 3_1:+85520847 | None:intergenic |
| TTGAGATCACCATACGGTTT+TGG | 0.292602 | 3_1:-85520289 | Msa0382770:CDS |
| TTTACTTACCTCACTTAGTT+TGG | 0.293285 | 3_1:+85520748 | None:intergenic |
| CCAGCTAGCTAGGAATCTTT+AGG | 0.320270 | 3_1:-85519503 | Msa0382770:three_prime_UTR |
| GGGGAGTCAAGAATGATTTC+TGG | 0.322815 | 3_1:-85520535 | Msa0382770:CDS |
| TTGAGAAGTTCACGATAAAT+AGG | 0.332528 | 3_1:+85519810 | None:intergenic |
| TCGGTAGCATTCCATTCTAT+TGG | 0.379779 | 3_1:+85519870 | None:intergenic |
| GGCTCCTTTCTTGGTGGAAG+AGG | 0.386495 | 3_1:-85520487 | Msa0382770:CDS |
| GAGAAGGTATCAATATCCTT+AGG | 0.387497 | 3_1:+85520340 | None:intergenic |
| ACTCGCCCCGGCTGGAAATC+CGG | 0.405258 | 3_1:-85520238 | Msa0382770:CDS |
| GTGCCTCCACTCGCCCCGGC+TGG | 0.416254 | 3_1:-85520246 | Msa0382770:CDS |
| TTATCGTGAACTTCTCAATC+TGG | 0.418523 | 3_1:-85519805 | Msa0382770:intron |
| GGGCCGGTGGTGAAAGGAAA+AGG | 0.421977 | 3_1:+85520454 | None:intergenic |
| CAGTCACCAGGACGGACATC+AGG | 0.429559 | 3_1:+85520433 | None:intergenic |
| CTGATGTCCGTCCTGGTGAC+TGG | 0.431260 | 3_1:-85520432 | Msa0382770:CDS |
| AGATGAGCAGACCAGGAGAT+TGG | 0.434758 | 3_1:-85520615 | Msa0382770:CDS |
| GTCCTGCAGTTCCAATCTCC+TGG | 0.444104 | 3_1:+85520604 | None:intergenic |
| CTCTTCTTTGAAAGTTGAGG+TGG | 0.445847 | 3_1:+85520575 | None:intergenic |
| GGCACCACATTTGAAGCAGC+TGG | 0.455963 | 3_1:+85520363 | None:intergenic |
| GGAGGAGGCAGCGCCGGTGG+TGG | 0.457413 | 3_1:-85520268 | Msa0382770:CDS |
| TTTGAAGCAGCTGGAGCGGC+TGG | 0.457465 | 3_1:+85520372 | None:intergenic |
| CGCTCCAGCTGCTTCAAATG+TGG | 0.474359 | 3_1:-85520367 | Msa0382770:CDS |
| CCTAAAGATTCCTAGCTAGC+TGG | 0.477217 | 3_1:+85519503 | None:intergenic |
| TTTCTTGTATCCAGCTAGCT+AGG | 0.477621 | 3_1:-85519513 | Msa0382770:three_prime_UTR |
| CTTCAAATGTGGTGCCCCTA+AGG | 0.478199 | 3_1:-85520356 | Msa0382770:CDS |
| CAGTCACCGGATTTCCAGCC+GGG | 0.479965 | 3_1:+85520232 | None:intergenic |
| CCGGCTGGAAATCCGGTGAC+TGG | 0.485260 | 3_1:-85520231 | Msa0382770:CDS |
| AGAGCCTCTTCCACCAAGAA+AGG | 0.496788 | 3_1:+85520483 | None:intergenic |
| GCATAACTTCGCCAATAGAA+TGG | 0.497407 | 3_1:-85519881 | Msa0382770:CDS |
| CTTCCAGTACTAGATTCCCT+TGG | 0.497781 | 3_1:+85519838 | None:intergenic |
| ATTCTCTTCTTTGAAAGTTG+AGG | 0.498262 | 3_1:+85520572 | None:intergenic |
| TTTGGTGGCTCCTTTCTTGG+TGG | 0.500076 | 3_1:-85520493 | Msa0382770:CDS |
| AGCAGAAAGATGAGCAGACC+AGG | 0.504369 | 3_1:-85520622 | Msa0382770:exon |
| CACATTTGAAGCAGCTGGAG+CGG | 0.504933 | 3_1:+85520368 | None:intergenic |
| GGCCGGTGGTGAAAGGAAAA+GGG | 0.509497 | 3_1:+85520455 | None:intergenic |
| AGAAGGTATCAATATCCTTA+GGG | 0.509984 | 3_1:+85520341 | None:intergenic |
| GACCAGGAGATTGGAACTGC+AGG | 0.511105 | 3_1:-85520606 | Msa0382770:CDS |
| GCTACCGATGCAACGGTCCA+AGG | 0.513927 | 3_1:-85519855 | Msa0382770:CDS |
| GGATTTCCAGCCGGGGCGAG+TGG | 0.514801 | 3_1:+85520240 | None:intergenic |
| AGAATGATTTCTGGCGGCGG+CGG | 0.516918 | 3_1:-85520526 | Msa0382770:CDS |
| GCGAGTGGAGGCACCACCAC+CGG | 0.520780 | 3_1:+85520255 | None:intergenic |
| CTTACCTCACTTAGTTTGGA+AGG | 0.522107 | 3_1:+85520752 | None:intergenic |
| GTCTGAGGAGTCAGAGGAGA+AGG | 0.523791 | 3_1:+85520324 | None:intergenic |
| CCAGTCACCGGATTTCCAGC+CGG | 0.530047 | 3_1:+85520231 | None:intergenic |
| TTCTTGACTCCCCACATCGT+TGG | 0.531867 | 3_1:+85520545 | None:intergenic |
| ACCGGCCCTGATGTCCGTCC+TGG | 0.532481 | 3_1:-85520439 | Msa0382770:CDS |
| GGTCCAAGGGAATCTAGTAC+TGG | 0.534715 | 3_1:-85519841 | Msa0382770:CDS |
| TTTGGAGGAGGCAGCGCCGG+TGG | 0.535377 | 3_1:-85520271 | Msa0382770:CDS |
| GAGAATCTTGCCAACGATGT+GGG | 0.536610 | 3_1:-85520555 | Msa0382770:CDS |
| GGTGACTGGTATTGTACTGT+TGG | 0.542639 | 3_1:-85520418 | Msa0382770:CDS |
| TGGCGCTGATTAGTGTATCT+CGG | 0.545741 | 3_1:-85519453 | Msa0382770:three_prime_UTR |
| ACATCAGGGCCGGTGGTGAA+AGG | 0.548866 | 3_1:+85520448 | None:intergenic |
| ATTCCCTTGGACCGTTGCAT+CGG | 0.549976 | 3_1:+85519851 | None:intergenic |
| TTTCCAGCCGGGGCGAGTGG+AGG | 0.551998 | 3_1:+85520243 | None:intergenic |
| CTAGCTAGGAATCTTTAGGT+TGG | 0.553134 | 3_1:-85519499 | Msa0382770:three_prime_UTR |
| CTTAGTTTGGAAGGTAGTGA+TGG | 0.553592 | 3_1:+85520761 | None:intergenic |
| AAGAGTAATTGAGATTAAGG+TGG | 0.559698 | 3_1:+85520850 | None:intergenic |
| CCGGTGACTGGATATGCACC+AGG | 0.562370 | 3_1:-85520219 | Msa0382770:intron |
| CTGCCTCCTCCAAAACCGTA+TGG | 0.574316 | 3_1:+85520280 | None:intergenic |
| ACCAGGACGGACATCAGGGC+CGG | 0.576233 | 3_1:+85520438 | None:intergenic |
| AAAGGAGCCACCAAAATCAA+CGG | 0.591777 | 3_1:+85520501 | None:intergenic |
| CTACCGATGCAACGGTCCAA+GGG | 0.596798 | 3_1:-85519854 | Msa0382770:CDS |
| GGTGGTGCCTCCACTCGCCC+CGG | 0.597153 | 3_1:-85520250 | Msa0382770:CDS |
| CCTGGTGCATATCCAGTCAC+CGG | 0.599174 | 3_1:+85520219 | None:intergenic |
| AGAGAATCTTGCCAACGATG+TGG | 0.600788 | 3_1:-85520556 | Msa0382770:CDS |
| AGAATCTTGCCAACGATGTG+GGG | 0.604150 | 3_1:-85520554 | Msa0382770:CDS |
| CAATAATCGTGGCATGTCTG+AGG | 0.609735 | 3_1:+85520309 | None:intergenic |
| TGGCATGTCTGAGGAGTCAG+AGG | 0.612841 | 3_1:+85520318 | None:intergenic |
| AGGACGGACATCAGGGCCGG+TGG | 0.617823 | 3_1:+85520441 | None:intergenic |
| TCAAGAATGATTTCTGGCGG+CGG | 0.619694 | 3_1:-85520529 | Msa0382770:CDS |
| ATGGAATGCTACCGATGCAA+CGG | 0.621720 | 3_1:-85519862 | Msa0382770:CDS |
| TATTGTACTGTTGGAAACTG+TGG | 0.623871 | 3_1:-85520409 | Msa0382770:CDS |
| CGATTATTGAGATCACCATA+CGG | 0.625229 | 3_1:-85520295 | Msa0382770:CDS |
| CAAGAAGAGATAATTGAGAG+AGG | 0.626553 | 3_1:-85519607 | Msa0382770:three_prime_UTR |
| AGTCACCAGGACGGACATCA+GGG | 0.629819 | 3_1:+85520434 | None:intergenic |
| GCCGGTGGTGAAAGGAAAAG+GGG | 0.632818 | 3_1:+85520456 | None:intergenic |
| ACTACCTTCCAAACTAAGTG+AGG | 0.639319 | 3_1:-85520756 | Msa0382770:intron |
| ACAGTACAATACCAGTCACC+AGG | 0.642353 | 3_1:+85520421 | None:intergenic |
| GAGTCAAGAATGATTTCTGG+CGG | 0.656995 | 3_1:-85520532 | Msa0382770:CDS |
| TACAATACCAGTCACCAGGA+CGG | 0.657561 | 3_1:+85520425 | None:intergenic |
| TATGGTGATCTCAATAATCG+TGG | 0.671531 | 3_1:+85520298 | None:intergenic |
| GAAGGTATCAATATCCTTAG+GGG | 0.684912 | 3_1:+85520342 | None:intergenic |
| AGTCACCGGATTTCCAGCCG+GGG | 0.690621 | 3_1:+85520233 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTATAAGTTCCAAATT+AGG | + | chr3_1:85520089-85520108 | None:intergenic | 15.0% |
| !! | ATATACATCTAAAAATGAAT+TGG | + | chr3_1:85520496-85520515 | None:intergenic | 15.0% |
| !! | CTGGAATTAAAAATAAAAAA+AGG | + | chr3_1:85520603-85520622 | None:intergenic | 15.0% |
| !!! | CTTTTTTTATTTTTAATTCC+AGG | - | chr3_1:85520601-85520620 | Msa0382770:CDS | 15.0% |
| !! | TATATTATAAGTTCCAAATT+AGG | + | chr3_1:85520089-85520108 | None:intergenic | 15.0% |
| !! | ATATACATCTAAAAATGAAT+TGG | + | chr3_1:85520496-85520515 | None:intergenic | 15.0% |
| !! | CTGGAATTAAAAATAAAAAA+AGG | + | chr3_1:85520603-85520622 | None:intergenic | 15.0% |
| !!! | CTTTTTTTATTTTTAATTCC+AGG | - | chr3_1:85520601-85520620 | Msa0382770:CDS | 15.0% |
| !! | GATACTTCTTATAAATATTG+TGG | - | chr3_1:85520156-85520175 | Msa0382770:intron | 20.0% |
| !!! | CATTTTTATGAGATTTTGTT+AGG | + | chr3_1:85520187-85520206 | None:intergenic | 20.0% |
| !! | CTAACAAAATCTCATAAAAA+TGG | - | chr3_1:85520185-85520204 | Msa0382770:intron | 20.0% |
| !! | TTTCATTTGTCTCATTATAA+GGG | + | chr3_1:85520289-85520308 | None:intergenic | 20.0% |
| !! | TGCATAAAAAATATCAGAAT+TGG | + | chr3_1:85520519-85520538 | None:intergenic | 20.0% |
| !! | AAAAATAAGTAACTATCTCT+AGG | + | chr3_1:85520670-85520689 | None:intergenic | 20.0% |
| !!! | TAGAGATAGTTACTTATTTT+TGG | - | chr3_1:85520669-85520688 | Msa0382770:intron | 20.0% |
| !! | GATACTTCTTATAAATATTG+TGG | - | chr3_1:85520156-85520175 | Msa0382770:intron | 20.0% |
| !!! | CATTTTTATGAGATTTTGTT+AGG | + | chr3_1:85520187-85520206 | None:intergenic | 20.0% |
| !! | CTAACAAAATCTCATAAAAA+TGG | - | chr3_1:85520185-85520204 | Msa0382770:intron | 20.0% |
| !! | TTTCATTTGTCTCATTATAA+GGG | + | chr3_1:85520289-85520308 | None:intergenic | 20.0% |
| !! | TGCATAAAAAATATCAGAAT+TGG | + | chr3_1:85520519-85520538 | None:intergenic | 20.0% |
| !! | AAAAATAAGTAACTATCTCT+AGG | + | chr3_1:85520670-85520689 | None:intergenic | 20.0% |
| !!! | TAGAGATAGTTACTTATTTT+TGG | - | chr3_1:85520669-85520688 | Msa0382770:intron | 20.0% |
| ! | CTTCTTATAAATATTGTGGT+TGG | - | chr3_1:85520160-85520179 | Msa0382770:intron | 25.0% |
| ! | GTTTCATTTGTCTCATTATA+AGG | + | chr3_1:85520290-85520309 | None:intergenic | 25.0% |
| !!! | GACTATTTTGATTTTGAGTA+TGG | - | chr3_1:85520763-85520782 | Msa0382770:five_prime_UTR | 25.0% |
| !!! | ATTTTGATTTTGAGTATGGT+TGG | - | chr3_1:85520767-85520786 | Msa0382770:five_prime_UTR | 25.0% |
| !! | GATACTGAAAAAAAGTACAT+GGG | + | chr3_1:85520836-85520855 | None:intergenic | 25.0% |
| !! | TGATACTGAAAAAAAGTACA+TGG | + | chr3_1:85520837-85520856 | None:intergenic | 25.0% |
| ! | CTTCTTATAAATATTGTGGT+TGG | - | chr3_1:85520160-85520179 | Msa0382770:intron | 25.0% |
| ! | GTTTCATTTGTCTCATTATA+AGG | + | chr3_1:85520290-85520309 | None:intergenic | 25.0% |
| !!! | GACTATTTTGATTTTGAGTA+TGG | - | chr3_1:85520763-85520782 | Msa0382770:five_prime_UTR | 25.0% |
| !!! | ATTTTGATTTTGAGTATGGT+TGG | - | chr3_1:85520767-85520786 | Msa0382770:five_prime_UTR | 25.0% |
| !! | GATACTGAAAAAAAGTACAT+GGG | + | chr3_1:85520836-85520855 | None:intergenic | 25.0% |
| !! | TGATACTGAAAAAAAGTACA+TGG | + | chr3_1:85520837-85520856 | None:intergenic | 25.0% |
| AAGAGTAATTGAGATTAAGG+TGG | + | chr3_1:85519393-85519412 | None:intergenic | 30.0% | |
| GAGAAGAGTAATTGAGATTA+AGG | + | chr3_1:85519396-85519415 | None:intergenic | 30.0% | |
| TTTACTTACCTCACTTAGTT+TGG | + | chr3_1:85519495-85519514 | None:intergenic | 30.0% | |
| ! | ATTCTCTTCTTTGAAAGTTG+AGG | + | chr3_1:85519671-85519690 | None:intergenic | 30.0% |
| !! | AGAAGGTATCAATATCCTTA+GGG | + | chr3_1:85519902-85519921 | None:intergenic | 30.0% |
| ACATGACACTTATAATGAGA+CGG | + | chr3_1:85520130-85520149 | None:intergenic | 30.0% | |
| TTGAGAAGTTCACGATAAAT+AGG | + | chr3_1:85520433-85520452 | None:intergenic | 30.0% | |
| AAGAGTAATTGAGATTAAGG+TGG | + | chr3_1:85519393-85519412 | None:intergenic | 30.0% | |
| GAGAAGAGTAATTGAGATTA+AGG | + | chr3_1:85519396-85519415 | None:intergenic | 30.0% | |
| TTTACTTACCTCACTTAGTT+TGG | + | chr3_1:85519495-85519514 | None:intergenic | 30.0% | |
| ! | ATTCTCTTCTTTGAAAGTTG+AGG | + | chr3_1:85519671-85519690 | None:intergenic | 30.0% |
| !! | AGAAGGTATCAATATCCTTA+GGG | + | chr3_1:85519902-85519921 | None:intergenic | 30.0% |
| ACATGACACTTATAATGAGA+CGG | + | chr3_1:85520130-85520149 | None:intergenic | 30.0% | |
| TTGAGAAGTTCACGATAAAT+AGG | + | chr3_1:85520433-85520452 | None:intergenic | 30.0% | |
| TATTGTACTGTTGGAAACTG+TGG | - | chr3_1:85519831-85519850 | Msa0382770:CDS | 35.0% | |
| !! | GAAGGTATCAATATCCTTAG+GGG | + | chr3_1:85519901-85519920 | None:intergenic | 35.0% |
| !! | GAGAAGGTATCAATATCCTT+AGG | + | chr3_1:85519903-85519922 | None:intergenic | 35.0% |
| TATGGTGATCTCAATAATCG+TGG | + | chr3_1:85519945-85519964 | None:intergenic | 35.0% | |
| CGATTATTGAGATCACCATA+CGG | - | chr3_1:85519945-85519964 | Msa0382770:intron | 35.0% | |
| GAAATGATTGACATGAAACC+TGG | + | chr3_1:85520042-85520061 | None:intergenic | 35.0% | |
| TACCGAGAATTGAAATGTGT+AGG | - | chr3_1:85520322-85520341 | Msa0382770:CDS | 35.0% | |
| GACCTACACATTTCAATTCT+CGG | + | chr3_1:85520327-85520346 | None:intergenic | 35.0% | |
| AGAATTGAAATGTGTAGGTC+TGG | - | chr3_1:85520327-85520346 | Msa0382770:CDS | 35.0% | |
| GAATTGAAATGTGTAGGTCT+GGG | - | chr3_1:85520328-85520347 | Msa0382770:CDS | 35.0% | |
| TTATCGTGAACTTCTCAATC+TGG | - | chr3_1:85520435-85520454 | Msa0382770:CDS | 35.0% | |
| CTCTCTCAATTATCTCTTCT+TGG | + | chr3_1:85520635-85520654 | None:intergenic | 35.0% | |
| CAAGAAGAGATAATTGAGAG+AGG | - | chr3_1:85520633-85520652 | Msa0382770:intron | 35.0% | |
| TATTGTACTGTTGGAAACTG+TGG | - | chr3_1:85519831-85519850 | Msa0382770:CDS | 35.0% | |
| !! | GAAGGTATCAATATCCTTAG+GGG | + | chr3_1:85519901-85519920 | None:intergenic | 35.0% |
| !! | GAGAAGGTATCAATATCCTT+AGG | + | chr3_1:85519903-85519922 | None:intergenic | 35.0% |
| TATGGTGATCTCAATAATCG+TGG | + | chr3_1:85519945-85519964 | None:intergenic | 35.0% | |
| CGATTATTGAGATCACCATA+CGG | - | chr3_1:85519945-85519964 | Msa0382770:intron | 35.0% | |
| GAAATGATTGACATGAAACC+TGG | + | chr3_1:85520042-85520061 | None:intergenic | 35.0% | |
| TACCGAGAATTGAAATGTGT+AGG | - | chr3_1:85520322-85520341 | Msa0382770:CDS | 35.0% | |
| GACCTACACATTTCAATTCT+CGG | + | chr3_1:85520327-85520346 | None:intergenic | 35.0% | |
| AGAATTGAAATGTGTAGGTC+TGG | - | chr3_1:85520327-85520346 | Msa0382770:CDS | 35.0% | |
| GAATTGAAATGTGTAGGTCT+GGG | - | chr3_1:85520328-85520347 | Msa0382770:CDS | 35.0% | |
| TTATCGTGAACTTCTCAATC+TGG | - | chr3_1:85520435-85520454 | Msa0382770:CDS | 35.0% | |
| CTCTCTCAATTATCTCTTCT+TGG | + | chr3_1:85520635-85520654 | None:intergenic | 35.0% | |
| CAAGAAGAGATAATTGAGAG+AGG | - | chr3_1:85520633-85520652 | Msa0382770:intron | 35.0% | |
| ! | CTTAGTTTGGAAGGTAGTGA+TGG | + | chr3_1:85519482-85519501 | None:intergenic | 40.0% |
| ACTACCTTCCAAACTAAGTG+AGG | - | chr3_1:85519484-85519503 | Msa0382770:three_prime_UTR | 40.0% | |
| ! | CTTACCTCACTTAGTTTGGA+AGG | + | chr3_1:85519491-85519510 | None:intergenic | 40.0% |
| ! | CTCTTCTTTGAAAGTTGAGG+TGG | + | chr3_1:85519668-85519687 | None:intergenic | 40.0% |
| ! | GAGTCAAGAATGATTTCTGG+CGG | - | chr3_1:85519708-85519727 | Msa0382770:intron | 40.0% |
| AAAGGAGCCACCAAAATCAA+CGG | + | chr3_1:85519742-85519761 | None:intergenic | 40.0% | |
| ! | TTGAGATCACCATACGGTTT+TGG | - | chr3_1:85519951-85519970 | Msa0382770:intron | 40.0% |
| CAAATTAGGACGAAGTAGCA+AGG | + | chr3_1:85520075-85520094 | None:intergenic | 40.0% | |
| ! | CTTGCTACTTCGTCCTAATT+TGG | - | chr3_1:85520073-85520092 | Msa0382770:intron | 40.0% |
| CAATTCTCGGTAATGTCAGT+AGG | + | chr3_1:85520314-85520333 | None:intergenic | 40.0% | |
| GCATAACTTCGCCAATAGAA+TGG | - | chr3_1:85520359-85520378 | Msa0382770:CDS | 40.0% | |
| TCGGTAGCATTCCATTCTAT+TGG | + | chr3_1:85520373-85520392 | None:intergenic | 40.0% | |
| TTTCTTGTATCCAGCTAGCT+AGG | - | chr3_1:85520727-85520746 | Msa0382770:intron | 40.0% | |
| CTAGCTAGGAATCTTTAGGT+TGG | - | chr3_1:85520741-85520760 | Msa0382770:intron | 40.0% | |
| ! | CTTAGTTTGGAAGGTAGTGA+TGG | + | chr3_1:85519482-85519501 | None:intergenic | 40.0% |
| ACTACCTTCCAAACTAAGTG+AGG | - | chr3_1:85519484-85519503 | Msa0382770:three_prime_UTR | 40.0% | |
| ! | CTTACCTCACTTAGTTTGGA+AGG | + | chr3_1:85519491-85519510 | None:intergenic | 40.0% |
| ! | CTCTTCTTTGAAAGTTGAGG+TGG | + | chr3_1:85519668-85519687 | None:intergenic | 40.0% |
| ! | GAGTCAAGAATGATTTCTGG+CGG | - | chr3_1:85519708-85519727 | Msa0382770:intron | 40.0% |
| AAAGGAGCCACCAAAATCAA+CGG | + | chr3_1:85519742-85519761 | None:intergenic | 40.0% | |
| ! | TTGAGATCACCATACGGTTT+TGG | - | chr3_1:85519951-85519970 | Msa0382770:intron | 40.0% |
| CAAATTAGGACGAAGTAGCA+AGG | + | chr3_1:85520075-85520094 | None:intergenic | 40.0% | |
| ! | CTTGCTACTTCGTCCTAATT+TGG | - | chr3_1:85520073-85520092 | Msa0382770:intron | 40.0% |
| CAATTCTCGGTAATGTCAGT+AGG | + | chr3_1:85520314-85520333 | None:intergenic | 40.0% | |
| GCATAACTTCGCCAATAGAA+TGG | - | chr3_1:85520359-85520378 | Msa0382770:CDS | 40.0% | |
| TCGGTAGCATTCCATTCTAT+TGG | + | chr3_1:85520373-85520392 | None:intergenic | 40.0% | |
| TTTCTTGTATCCAGCTAGCT+AGG | - | chr3_1:85520727-85520746 | Msa0382770:intron | 40.0% | |
| CTAGCTAGGAATCTTTAGGT+TGG | - | chr3_1:85520741-85520760 | Msa0382770:intron | 40.0% | |
| AGAGAATCTTGCCAACGATG+TGG | - | chr3_1:85519684-85519703 | Msa0382770:intron | 45.0% | |
| GAGAATCTTGCCAACGATGT+GGG | - | chr3_1:85519685-85519704 | Msa0382770:intron | 45.0% | |
| AGAATCTTGCCAACGATGTG+GGG | - | chr3_1:85519686-85519705 | Msa0382770:intron | 45.0% | |
| GGGGAGTCAAGAATGATTTC+TGG | - | chr3_1:85519705-85519724 | Msa0382770:intron | 45.0% | |
| !! | TCAAGAATGATTTCTGGCGG+CGG | - | chr3_1:85519711-85519730 | Msa0382770:intron | 45.0% |
| !! | GATTTTGGTGGCTCCTTTCT+TGG | - | chr3_1:85519744-85519763 | Msa0382770:intron | 45.0% |
| TACAATACCAGTCACCAGGA+CGG | + | chr3_1:85519818-85519837 | None:intergenic | 45.0% | |
| ACAGTACAATACCAGTCACC+AGG | + | chr3_1:85519822-85519841 | None:intergenic | 45.0% | |
| GGTGACTGGTATTGTACTGT+TGG | - | chr3_1:85519822-85519841 | Msa0382770:CDS | 45.0% | |
| CAATAATCGTGGCATGTCTG+AGG | + | chr3_1:85519934-85519953 | None:intergenic | 45.0% | |
| !! | AGATCACCATACGGTTTTGG+AGG | - | chr3_1:85519954-85519973 | Msa0382770:intron | 45.0% |
| ATGGAATGCTACCGATGCAA+CGG | - | chr3_1:85520378-85520397 | Msa0382770:CDS | 45.0% | |
| CTTCCAGTACTAGATTCCCT+TGG | + | chr3_1:85520405-85520424 | None:intergenic | 45.0% | |
| CTCTTCTTGGACATCAAACC+TGG | + | chr3_1:85520622-85520641 | None:intergenic | 45.0% | |
| CCTAAAGATTCCTAGCTAGC+TGG | + | chr3_1:85520740-85520759 | None:intergenic | 45.0% | |
| CCAGCTAGCTAGGAATCTTT+AGG | - | chr3_1:85520737-85520756 | Msa0382770:intron | 45.0% | |
| !! | TGGCGCTGATTAGTGTATCT+CGG | - | chr3_1:85520787-85520806 | Msa0382770:five_prime_UTR | 45.0% |
| AGAGAATCTTGCCAACGATG+TGG | - | chr3_1:85519684-85519703 | Msa0382770:intron | 45.0% | |
| GAGAATCTTGCCAACGATGT+GGG | - | chr3_1:85519685-85519704 | Msa0382770:intron | 45.0% | |
| AGAATCTTGCCAACGATGTG+GGG | - | chr3_1:85519686-85519705 | Msa0382770:intron | 45.0% | |
| GGGGAGTCAAGAATGATTTC+TGG | - | chr3_1:85519705-85519724 | Msa0382770:intron | 45.0% | |
| !! | TCAAGAATGATTTCTGGCGG+CGG | - | chr3_1:85519711-85519730 | Msa0382770:intron | 45.0% |
| !! | GATTTTGGTGGCTCCTTTCT+TGG | - | chr3_1:85519744-85519763 | Msa0382770:intron | 45.0% |
| TACAATACCAGTCACCAGGA+CGG | + | chr3_1:85519818-85519837 | None:intergenic | 45.0% | |
| ACAGTACAATACCAGTCACC+AGG | + | chr3_1:85519822-85519841 | None:intergenic | 45.0% | |
| GGTGACTGGTATTGTACTGT+TGG | - | chr3_1:85519822-85519841 | Msa0382770:CDS | 45.0% | |
| CAATAATCGTGGCATGTCTG+AGG | + | chr3_1:85519934-85519953 | None:intergenic | 45.0% | |
| !! | AGATCACCATACGGTTTTGG+AGG | - | chr3_1:85519954-85519973 | Msa0382770:intron | 45.0% |
| ATGGAATGCTACCGATGCAA+CGG | - | chr3_1:85520378-85520397 | Msa0382770:CDS | 45.0% | |
| CTTCCAGTACTAGATTCCCT+TGG | + | chr3_1:85520405-85520424 | None:intergenic | 45.0% | |
| CTCTTCTTGGACATCAAACC+TGG | + | chr3_1:85520622-85520641 | None:intergenic | 45.0% | |
| CCTAAAGATTCCTAGCTAGC+TGG | + | chr3_1:85520740-85520759 | None:intergenic | 45.0% | |
| CCAGCTAGCTAGGAATCTTT+AGG | - | chr3_1:85520737-85520756 | Msa0382770:intron | 45.0% | |
| !! | TGGCGCTGATTAGTGTATCT+CGG | - | chr3_1:85520787-85520806 | Msa0382770:five_prime_UTR | 45.0% |
| AGCAGAAAGATGAGCAGACC+AGG | - | chr3_1:85519618-85519637 | Msa0382770:three_prime_UTR | 50.0% | |
| AGATGAGCAGACCAGGAGAT+TGG | - | chr3_1:85519625-85519644 | Msa0382770:intron | 50.0% | |
| TTCTTGACTCCCCACATCGT+TGG | + | chr3_1:85519698-85519717 | None:intergenic | 50.0% | |
| ! | TTTGGTGGCTCCTTTCTTGG+TGG | - | chr3_1:85519747-85519766 | Msa0382770:intron | 50.0% |
| AGAGCCTCTTCCACCAAGAA+AGG | + | chr3_1:85519760-85519779 | None:intergenic | 50.0% | |
| ! | TCCCCTTTTCCTTTCACCAC+CGG | - | chr3_1:85519783-85519802 | Msa0382770:intron | 50.0% |
| ! | CACATTTGAAGCAGCTGGAG+CGG | + | chr3_1:85519875-85519894 | None:intergenic | 50.0% |
| CTTCAAATGTGGTGCCCCTA+AGG | - | chr3_1:85519884-85519903 | Msa0382770:CDS | 50.0% | |
| !!! | TCACCATACGGTTTTGGAGG+AGG | - | chr3_1:85519957-85519976 | Msa0382770:intron | 50.0% |
| ATTCCCTTGGACCGTTGCAT+CGG | + | chr3_1:85520392-85520411 | None:intergenic | 50.0% | |
| GGTCCAAGGGAATCTAGTAC+TGG | - | chr3_1:85520399-85520418 | Msa0382770:CDS | 50.0% | |
| AGCAGAAAGATGAGCAGACC+AGG | - | chr3_1:85519618-85519637 | Msa0382770:three_prime_UTR | 50.0% | |
| AGATGAGCAGACCAGGAGAT+TGG | - | chr3_1:85519625-85519644 | Msa0382770:intron | 50.0% | |
| TTCTTGACTCCCCACATCGT+TGG | + | chr3_1:85519698-85519717 | None:intergenic | 50.0% | |
| ! | TTTGGTGGCTCCTTTCTTGG+TGG | - | chr3_1:85519747-85519766 | Msa0382770:intron | 50.0% |
| AGAGCCTCTTCCACCAAGAA+AGG | + | chr3_1:85519760-85519779 | None:intergenic | 50.0% | |
| ! | TCCCCTTTTCCTTTCACCAC+CGG | - | chr3_1:85519783-85519802 | Msa0382770:intron | 50.0% |
| ! | CACATTTGAAGCAGCTGGAG+CGG | + | chr3_1:85519875-85519894 | None:intergenic | 50.0% |
| CTTCAAATGTGGTGCCCCTA+AGG | - | chr3_1:85519884-85519903 | Msa0382770:CDS | 50.0% | |
| !!! | TCACCATACGGTTTTGGAGG+AGG | - | chr3_1:85519957-85519976 | Msa0382770:intron | 50.0% |
| ATTCCCTTGGACCGTTGCAT+CGG | + | chr3_1:85520392-85520411 | None:intergenic | 50.0% | |
| GGTCCAAGGGAATCTAGTAC+TGG | - | chr3_1:85520399-85520418 | Msa0382770:CDS | 50.0% | |
| GACCAGGAGATTGGAACTGC+AGG | - | chr3_1:85519634-85519653 | Msa0382770:intron | 55.0% | |
| GTCCTGCAGTTCCAATCTCC+TGG | + | chr3_1:85519639-85519658 | None:intergenic | 55.0% | |
| !! | AGAATGATTTCTGGCGGCGG+CGG | - | chr3_1:85519714-85519733 | Msa0382770:intron | 55.0% |
| GGCTCCTTTCTTGGTGGAAG+AGG | - | chr3_1:85519753-85519772 | Msa0382770:intron | 55.0% | |
| GCCGGTGGTGAAAGGAAAAG+GGG | + | chr3_1:85519787-85519806 | None:intergenic | 55.0% | |
| GGCCGGTGGTGAAAGGAAAA+GGG | + | chr3_1:85519788-85519807 | None:intergenic | 55.0% | |
| AGTCACCAGGACGGACATCA+GGG | + | chr3_1:85519809-85519828 | None:intergenic | 55.0% | |
| CGCTCCAGCTGCTTCAAATG+TGG | - | chr3_1:85519873-85519892 | Msa0382770:CDS | 55.0% | |
| ! | GGCACCACATTTGAAGCAGC+TGG | + | chr3_1:85519880-85519899 | None:intergenic | 55.0% |
| GTCTGAGGAGTCAGAGGAGA+AGG | + | chr3_1:85519919-85519938 | None:intergenic | 55.0% | |
| TGGCATGTCTGAGGAGTCAG+AGG | + | chr3_1:85519925-85519944 | None:intergenic | 55.0% | |
| CTGCCTCCTCCAAAACCGTA+TGG | + | chr3_1:85519963-85519982 | None:intergenic | 55.0% | |
| CCTGGTGCATATCCAGTCAC+CGG | + | chr3_1:85520024-85520043 | None:intergenic | 55.0% | |
| CTACCGATGCAACGGTCCAA+GGG | - | chr3_1:85520386-85520405 | Msa0382770:CDS | 55.0% | |
| GACCAGGAGATTGGAACTGC+AGG | - | chr3_1:85519634-85519653 | Msa0382770:intron | 55.0% | |
| GTCCTGCAGTTCCAATCTCC+TGG | + | chr3_1:85519639-85519658 | None:intergenic | 55.0% | |
| !! | AGAATGATTTCTGGCGGCGG+CGG | - | chr3_1:85519714-85519733 | Msa0382770:intron | 55.0% |
| GGCTCCTTTCTTGGTGGAAG+AGG | - | chr3_1:85519753-85519772 | Msa0382770:intron | 55.0% | |
| GCCGGTGGTGAAAGGAAAAG+GGG | + | chr3_1:85519787-85519806 | None:intergenic | 55.0% | |
| GGCCGGTGGTGAAAGGAAAA+GGG | + | chr3_1:85519788-85519807 | None:intergenic | 55.0% | |
| AGTCACCAGGACGGACATCA+GGG | + | chr3_1:85519809-85519828 | None:intergenic | 55.0% | |
| CGCTCCAGCTGCTTCAAATG+TGG | - | chr3_1:85519873-85519892 | Msa0382770:CDS | 55.0% | |
| ! | GGCACCACATTTGAAGCAGC+TGG | + | chr3_1:85519880-85519899 | None:intergenic | 55.0% |
| GTCTGAGGAGTCAGAGGAGA+AGG | + | chr3_1:85519919-85519938 | None:intergenic | 55.0% | |
| TGGCATGTCTGAGGAGTCAG+AGG | + | chr3_1:85519925-85519944 | None:intergenic | 55.0% | |
| CTGCCTCCTCCAAAACCGTA+TGG | + | chr3_1:85519963-85519982 | None:intergenic | 55.0% | |
| CCTGGTGCATATCCAGTCAC+CGG | + | chr3_1:85520024-85520043 | None:intergenic | 55.0% | |
| CTACCGATGCAACGGTCCAA+GGG | - | chr3_1:85520386-85520405 | Msa0382770:CDS | 55.0% | |
| GGGCCGGTGGTGAAAGGAAA+AGG | + | chr3_1:85519789-85519808 | None:intergenic | 60.0% | |
| ACATCAGGGCCGGTGGTGAA+AGG | + | chr3_1:85519795-85519814 | None:intergenic | 60.0% | |
| CAGTCACCAGGACGGACATC+AGG | + | chr3_1:85519810-85519829 | None:intergenic | 60.0% | |
| CTGATGTCCGTCCTGGTGAC+TGG | - | chr3_1:85519808-85519827 | Msa0382770:exon | 60.0% | |
| ! | TTTGAAGCAGCTGGAGCGGC+TGG | + | chr3_1:85519871-85519890 | None:intergenic | 60.0% |
| AGTCACCGGATTTCCAGCCG+GGG | + | chr3_1:85520010-85520029 | None:intergenic | 60.0% | |
| CAGTCACCGGATTTCCAGCC+GGG | + | chr3_1:85520011-85520030 | None:intergenic | 60.0% | |
| CCAGTCACCGGATTTCCAGC+CGG | + | chr3_1:85520012-85520031 | None:intergenic | 60.0% | |
| CCGGTGACTGGATATGCACC+AGG | - | chr3_1:85520021-85520040 | Msa0382770:intron | 60.0% | |
| GCTACCGATGCAACGGTCCA+AGG | - | chr3_1:85520385-85520404 | Msa0382770:CDS | 60.0% | |
| GGGCCGGTGGTGAAAGGAAA+AGG | + | chr3_1:85519789-85519808 | None:intergenic | 60.0% | |
| ACATCAGGGCCGGTGGTGAA+AGG | + | chr3_1:85519795-85519814 | None:intergenic | 60.0% | |
| CAGTCACCAGGACGGACATC+AGG | + | chr3_1:85519810-85519829 | None:intergenic | 60.0% | |
| CTGATGTCCGTCCTGGTGAC+TGG | - | chr3_1:85519808-85519827 | Msa0382770:exon | 60.0% | |
| ! | TTTGAAGCAGCTGGAGCGGC+TGG | + | chr3_1:85519871-85519890 | None:intergenic | 60.0% |
| AGTCACCGGATTTCCAGCCG+GGG | + | chr3_1:85520010-85520029 | None:intergenic | 60.0% | |
| CAGTCACCGGATTTCCAGCC+GGG | + | chr3_1:85520011-85520030 | None:intergenic | 60.0% | |
| CCAGTCACCGGATTTCCAGC+CGG | + | chr3_1:85520012-85520031 | None:intergenic | 60.0% | |
| CCGGTGACTGGATATGCACC+AGG | - | chr3_1:85520021-85520040 | Msa0382770:intron | 60.0% | |
| GCTACCGATGCAACGGTCCA+AGG | - | chr3_1:85520385-85520404 | Msa0382770:CDS | 60.0% | |
| !!! | GGCGGCGCCGTTGATTTTGG+TGG | - | chr3_1:85519732-85519751 | Msa0382770:intron | 65.0% |
| ACCAGGACGGACATCAGGGC+CGG | + | chr3_1:85519805-85519824 | None:intergenic | 65.0% | |
| !!! | GGTTTTGGAGGAGGCAGCGC+CGG | - | chr3_1:85519966-85519985 | Msa0382770:intron | 65.0% |
| ACTCGCCCCGGCTGGAAATC+CGG | - | chr3_1:85520002-85520021 | Msa0382770:intron | 65.0% | |
| CCGGCTGGAAATCCGGTGAC+TGG | - | chr3_1:85520009-85520028 | Msa0382770:intron | 65.0% | |
| !!! | GGCGGCGCCGTTGATTTTGG+TGG | - | chr3_1:85519732-85519751 | Msa0382770:intron | 65.0% |
| ACCAGGACGGACATCAGGGC+CGG | + | chr3_1:85519805-85519824 | None:intergenic | 65.0% | |
| !!! | GGTTTTGGAGGAGGCAGCGC+CGG | - | chr3_1:85519966-85519985 | Msa0382770:intron | 65.0% |
| ACTCGCCCCGGCTGGAAATC+CGG | - | chr3_1:85520002-85520021 | Msa0382770:intron | 65.0% | |
| CCGGCTGGAAATCCGGTGAC+TGG | - | chr3_1:85520009-85520028 | Msa0382770:intron | 65.0% | |
| !!! | GGCGGCGGCGCCGTTGATTT+TGG | - | chr3_1:85519729-85519748 | Msa0382770:intron | 70.0% |
| AGGACGGACATCAGGGCCGG+TGG | + | chr3_1:85519802-85519821 | None:intergenic | 70.0% | |
| ACCGGCCCTGATGTCCGTCC+TGG | - | chr3_1:85519801-85519820 | Msa0382770:intron | 70.0% | |
| ! | TTTGGAGGAGGCAGCGCCGG+TGG | - | chr3_1:85519969-85519988 | Msa0382770:intron | 70.0% |
| !! | GCGAGTGGAGGCACCACCAC+CGG | + | chr3_1:85519988-85520007 | None:intergenic | 70.0% |
| TTTCCAGCCGGGGCGAGTGG+AGG | + | chr3_1:85520000-85520019 | None:intergenic | 70.0% | |
| GGATTTCCAGCCGGGGCGAG+TGG | + | chr3_1:85520003-85520022 | None:intergenic | 70.0% | |
| !!! | GGCGGCGGCGCCGTTGATTT+TGG | - | chr3_1:85519729-85519748 | Msa0382770:intron | 70.0% |
| AGGACGGACATCAGGGCCGG+TGG | + | chr3_1:85519802-85519821 | None:intergenic | 70.0% | |
| ACCGGCCCTGATGTCCGTCC+TGG | - | chr3_1:85519801-85519820 | Msa0382770:intron | 70.0% | |
| ! | TTTGGAGGAGGCAGCGCCGG+TGG | - | chr3_1:85519969-85519988 | Msa0382770:intron | 70.0% |
| !! | GCGAGTGGAGGCACCACCAC+CGG | + | chr3_1:85519988-85520007 | None:intergenic | 70.0% |
| TTTCCAGCCGGGGCGAGTGG+AGG | + | chr3_1:85520000-85520019 | None:intergenic | 70.0% | |
| GGATTTCCAGCCGGGGCGAG+TGG | + | chr3_1:85520003-85520022 | None:intergenic | 70.0% | |
| GGTGGTGCCTCCACTCGCCC+CGG | - | chr3_1:85519990-85520009 | Msa0382770:intron | 75.0% | |
| GGTGGTGCCTCCACTCGCCC+CGG | - | chr3_1:85519990-85520009 | Msa0382770:intron | 75.0% | |
| !!! | GGAGGAGGCAGCGCCGGTGG+TGG | - | chr3_1:85519972-85519991 | Msa0382770:intron | 80.0% |
| ! | GTGCCTCCACTCGCCCCGGC+TGG | - | chr3_1:85519994-85520013 | Msa0382770:intron | 80.0% |
| !!! | GGAGGAGGCAGCGCCGGTGG+TGG | - | chr3_1:85519972-85519991 | Msa0382770:intron | 80.0% |
| ! | GTGCCTCCACTCGCCCCGGC+TGG | - | chr3_1:85519994-85520013 | Msa0382770:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 85519370 | 85520892 | 85519370 | ID=Msa0382770;Name=Msa0382770 |
| chr3_1 | mRNA | 85519370 | 85520892 | 85519370 | ID=Msa0382770-mRNA-1;Parent=Msa0382770;Name=Msa0382770-mRNA-1;_AED=0.12;_eAED=0.12;_QI=150|1|1|1|0.33|0.25|4|283|171 |
| chr3_1 | exon | 85519370 | 85519639 | 85519370 | ID=Msa0382770-mRNA-1:exon:22450;Parent=Msa0382770-mRNA-1 |
| chr3_1 | exon | 85519806 | 85519918 | 85519806 | ID=Msa0382770-mRNA-1:exon:22449;Parent=Msa0382770-mRNA-1 |
| chr3_1 | exon | 85520220 | 85520649 | 85520220 | ID=Msa0382770-mRNA-1:exon:22448;Parent=Msa0382770-mRNA-1 |
| chr3_1 | exon | 85520757 | 85520892 | 85520757 | ID=Msa0382770-mRNA-1:exon:22447;Parent=Msa0382770-mRNA-1 |
| chr3_1 | five_prime_UTR | 85520757 | 85520892 | 85520757 | ID=Msa0382770-mRNA-1:five_prime_utr;Parent=Msa0382770-mRNA-1 |
| chr3_1 | five_prime_UTR | 85520636 | 85520649 | 85520636 | ID=Msa0382770-mRNA-1:five_prime_utr;Parent=Msa0382770-mRNA-1 |
| chr3_1 | CDS | 85520220 | 85520635 | 85520220 | ID=Msa0382770-mRNA-1:cds;Parent=Msa0382770-mRNA-1 |
| chr3_1 | CDS | 85519819 | 85519918 | 85519819 | ID=Msa0382770-mRNA-1:cds;Parent=Msa0382770-mRNA-1 |
| chr3_1 | three_prime_UTR | 85519806 | 85519818 | 85519806 | ID=Msa0382770-mRNA-1:three_prime_utr;Parent=Msa0382770-mRNA-1 |
| chr3_1 | three_prime_UTR | 85519370 | 85519639 | 85519370 | ID=Msa0382770-mRNA-1:three_prime_utr;Parent=Msa0382770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
