Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0900980 | KEH27251.1 | 77.778 | 333 | 37 | 3 | 114 | 410 | 149 | 480 | 3.18e-149 | 472 |
| Msa0900980 | KEH27251.1 | 80.299 | 401 | 30 | 2 | 432 | 783 | 572 | 972 | 0.0 | 587 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0900980 | A0A072UCR4 | 77.778 | 333 | 37 | 3 | 114 | 410 | 149 | 480 | 1.52e-149 | 472 |
| Msa0900980 | A0A072UCR4 | 80.299 | 401 | 30 | 2 | 432 | 783 | 572 | 972 | 0.0 | 587 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0090320 | Msa0900980 | 0.847888 | 8.695098e-60 | -8.615850e-47 |
| Msa0105260 | Msa0900980 | 0.805812 | 1.113916e-49 | -8.615850e-47 |
| Msa0748970 | Msa0900980 | 0.821313 | 4.313818e-53 | -8.615850e-47 |
| Msa0800210 | Msa0900980 | 0.801140 | 1.036273e-48 | -8.615850e-47 |
| Msa0131770 | Msa0900980 | 0.800498 | 1.400889e-48 | -8.615850e-47 |
| Msa0137640 | Msa0900980 | 0.852632 | 4.063546e-61 | -8.615850e-47 |
| Msa0182710 | Msa0900980 | 0.815483 | 9.032174e-52 | -8.615850e-47 |
| Msa0182740 | Msa0900980 | 0.851624 | 7.863469e-61 | -8.615850e-47 |
| Msa0191840 | Msa0900980 | 0.812064 | 5.117250e-51 | -8.615850e-47 |
| Msa0411390 | Msa0900980 | 0.813640 | 2.311121e-51 | -8.615850e-47 |
| Msa0342750 | Msa0900980 | 0.820056 | 8.389203e-53 | -8.615850e-47 |
| Msa0362450 | Msa0900980 | 0.805770 | 1.136891e-49 | -8.615850e-47 |
| Msa0598790 | Msa0900980 | 0.801953 | 7.060673e-49 | -8.615850e-47 |
| Msa0900910 | Msa0900980 | 0.808515 | 2.981664e-50 | -8.615850e-47 |
| Msa0900980 | Msa0901020 | 0.821883 | 3.185367e-53 | -8.615850e-47 |
| Msa0900980 | Msa0901070 | 0.820650 | 6.130801e-53 | -8.615850e-47 |
| Msa0900980 | Msa0913060 | 0.810569 | 1.079724e-50 | -8.615850e-47 |
| Msa0900980 | Msa0925810 | 0.811949 | 5.420543e-51 | -8.615850e-47 |
| Msa0900980 | Msa0966770 | 0.817586 | 3.054272e-52 | -8.615850e-47 |
| Msa0900980 | Msa0967280 | 0.837616 | 4.678247e-57 | -8.615850e-47 |
| Msa0900980 | Msa0998680 | 0.809172 | 2.157972e-50 | -8.615850e-47 |
| Msa0900980 | Msa1241130 | -0.805891 | 1.072362e-49 | -8.615850e-47 |
| Msa0900980 | Msa1269940 | 0.801394 | 9.192978e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0900980 | MtrunA17_Chr6g0487991 | 80.299 | 401 | 30 | 2 | 432 | 783 | 637 | 1037 | 0.0 | 587 |
| Msa0900980 | MtrunA17_Chr6g0487991 | 77.778 | 333 | 37 | 3 | 114 | 410 | 214 | 545 | 8.75e-153 | 473 |
| Msa0900980 | MtrunA17_Chr4g0042021 | 53.535 | 99 | 43 | 2 | 112 | 208 | 197 | 294 | 5.15e-20 | 92.8 |
| Msa0900980 | MtrunA17_Chr4g0042021 | 65.000 | 80 | 28 | 0 | 580 | 659 | 302 | 381 | 1.65e-12 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 161 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCTATTTGGTTCTGAAAT+TGG | 0.166553 | 6_1:-97225128 | None:intergenic |
| GAATCATAATCAGGTAAATT+TGG | 0.196940 | 6_1:-97225266 | None:intergenic |
| TCCTCACCCAAGGATCTATT+TGG | 0.220339 | 6_1:-97225140 | None:intergenic |
| TGGTGGCTGGTCATTGTTTA+TGG | 0.235303 | 6_1:-97221649 | None:intergenic |
| TCAGCATCATCAAAATTATT+AGG | 0.241605 | 6_1:-97224456 | None:intergenic |
| GAAGATCTGGTTTCAGTATT+AGG | 0.243148 | 6_1:-97222997 | None:intergenic |
| CGTATTGGTATCCACCTTAA+TGG | 0.243592 | 6_1:-97221445 | None:intergenic |
| TTGTTAAGTCTAGAGTTTCT+AGG | 0.260045 | 6_1:+97224193 | Msa0900980:CDS |
| AATGGCTATGGCCTCTGCTT+TGG | 0.276583 | 6_1:+97221416 | None:intergenic |
| GATGATGTTTCAACTTCATT+AGG | 0.292788 | 6_1:+97224591 | Msa0900980:CDS |
| TTCCTACTGGTAGGCAGAAT+TGG | 0.293667 | 6_1:+97223161 | Msa0900980:CDS |
| AACTCGTATGACTGGACAAC+TGG | 0.296072 | 6_1:+97223803 | Msa0900980:CDS |
| AAGTCATCTTGAAGAACTTA+TGG | 0.316387 | 6_1:+97222805 | Msa0900980:intron |
| TGTGAGGTAGAATGTGAATT+AGG | 0.322694 | 6_1:-97222880 | None:intergenic |
| TGCTTTGGGACGTCCCATTA+AGG | 0.330248 | 6_1:+97221431 | Msa0900980:CDS |
| ATGGCTATGGCCTCTGCTTT+GGG | 0.331536 | 6_1:+97221417 | Msa0900980:CDS |
| CACCGGAGAACAAGATAATC+TGG | 0.338416 | 6_1:+97223421 | Msa0900980:CDS |
| GCCACCAATTGACTTGTTAT+CGG | 0.346745 | 6_1:+97221665 | Msa0900980:CDS |
| ATCAATTGAAGAGAGAATAT+TGG | 0.347832 | 6_1:+97221823 | Msa0900980:CDS |
| GCGAGGTTCATGAATGCTAA+TGG | 0.351439 | 6_1:-97224781 | None:intergenic |
| CTTACGAGAGCTCTGAAAAT+CGG | 0.354961 | 6_1:+97225063 | Msa0900980:CDS |
| TATGCATCATGCATTGGTTT+AGG | 0.355141 | 6_1:-97222904 | None:intergenic |
| AAGATCAAACTGCTAGAATT+CGG | 0.362389 | 6_1:+97221867 | Msa0900980:CDS |
| ATTGTATATTTGTCATGAAC+AGG | 0.362901 | 6_1:-97224675 | None:intergenic |
| CTATCTTGTATATCTGTATT+AGG | 0.372441 | 6_1:-97225206 | None:intergenic |
| AGCTTGCTTCAGTAACAAAA+AGG | 0.385924 | 6_1:-97223844 | None:intergenic |
| ATCCATACTTTACCCACAAC+TGG | 0.391193 | 6_1:-97221485 | None:intergenic |
| GTGACTCCTGGTTCAAGGCT+TGG | 0.394609 | 6_1:+97225020 | Msa0900980:CDS |
| AATACTGAAACCAGATCTTC+AGG | 0.394796 | 6_1:+97223000 | Msa0900980:CDS |
| TTACGAGAGCTCTGAAAATC+GGG | 0.399261 | 6_1:+97225064 | Msa0900980:CDS |
| TCCCGGCCAGCTTCAACAAT+TGG | 0.399425 | 6_1:+97223497 | Msa0900980:CDS |
| CAATGTATGGATATCTAACT+TGG | 0.402249 | 6_1:-97224427 | None:intergenic |
| CATTGAAGCTTGCCGTTTCG+AGG | 0.404813 | 6_1:+97221763 | Msa0900980:intron |
| CTTTCTTAAGAGACATGAAA+TGG | 0.408114 | 6_1:-97225298 | None:intergenic |
| CTCCTGTGACTCCTGGTTCA+AGG | 0.408536 | 6_1:+97225015 | Msa0900980:CDS |
| CAGCTTCTTGCTTCTGCGTA+TGG | 0.411340 | 6_1:-97221593 | None:intergenic |
| TTCAGAACCAAATAGATCCT+TGG | 0.413916 | 6_1:+97225133 | Msa0900980:CDS |
| TGCAGCTGCTCTTGCAGCCA+TGG | 0.416599 | 6_1:-97223239 | None:intergenic |
| TCTGAAGCTCCTGTGACTCC+TGG | 0.422346 | 6_1:+97225008 | Msa0900980:CDS |
| ATGAAAGATTGCCTACAGTT+AGG | 0.429543 | 6_1:+97224631 | Msa0900980:CDS |
| GCAAGGACAAATAGACAATC+TGG | 0.433202 | 6_1:+97223725 | Msa0900980:CDS |
| CTTCGAGATACTCTACTAAC+AGG | 0.436014 | 6_1:-97224930 | None:intergenic |
| TGCAAATGCTGCTGCTAGAA+AGG | 0.436906 | 6_1:+97222948 | Msa0900980:CDS |
| AGATCAAACTGCTAGAATTC+GGG | 0.437095 | 6_1:+97221868 | Msa0900980:CDS |
| GCTAATAACTCTACAACATC+AGG | 0.439607 | 6_1:+97222970 | Msa0900980:CDS |
| ATCTGTATTAGGAAGAGAAC+TGG | 0.439665 | 6_1:-97225195 | None:intergenic |
| TCAGAACCAAATAGATCCTT+GGG | 0.443697 | 6_1:+97225134 | Msa0900980:CDS |
| ATTGCAAACCATGGGGCTCT+AGG | 0.444516 | 6_1:+97224249 | Msa0900980:CDS |
| GTATTGGTATCCACCTTAAT+GGG | 0.444553 | 6_1:-97221444 | None:intergenic |
| GGCTTGGATGGAAATCTTCA+AGG | 0.446593 | 6_1:+97225036 | Msa0900980:CDS |
| TATTAGGTGACTGCAATGTA+TGG | 0.452490 | 6_1:-97224440 | None:intergenic |
| CACCAATTGTTGAAGCTGGC+CGG | 0.454275 | 6_1:-97223499 | None:intergenic |
| GTCACAGGAGCTTCAGATGA+AGG | 0.454401 | 6_1:-97225002 | None:intergenic |
| GAGTTTCTTGCTGTTGAAGA+TGG | 0.454403 | 6_1:-97224387 | None:intergenic |
| AACAAGATAATCTGGGTAGA+AGG | 0.454415 | 6_1:+97223429 | Msa0900980:CDS |
| TGATTCTGATAGTTATGATC+TGG | 0.454482 | 6_1:+97224740 | Msa0900980:CDS |
| CGAGGTTCATGAATGCTAAT+GGG | 0.455131 | 6_1:-97224780 | None:intergenic |
| AGAATGTGGTGAAAGATTCC+CGG | 0.458953 | 6_1:+97223480 | Msa0900980:CDS |
| GTTAGAGCTTAAAACTGTAC+AGG | 0.461464 | 6_1:-97224973 | None:intergenic |
| GCAGCAAATGAATCATAATC+AGG | 0.463432 | 6_1:-97225275 | None:intergenic |
| AAATTGTGACTTCATCTTCA+AGG | 0.466150 | 6_1:+97225162 | Msa0900980:CDS |
| TCTGTCTCACTATCTGAGCC+TGG | 0.470675 | 6_1:-97224168 | None:intergenic |
| ACCCAGATTATCTTGTTCTC+CGG | 0.472801 | 6_1:-97223423 | None:intergenic |
| CTCCTGGTTCAAGGCTTGGA+TGG | 0.478427 | 6_1:+97225024 | Msa0900980:CDS |
| ATAATCACCATCATCTGATT+CGG | 0.479186 | 6_1:-97223915 | None:intergenic |
| ATTGGAGATCCATGGGCAAA+TGG | 0.480567 | 6_1:-97223542 | None:intergenic |
| GGTCGTCACCATCTTCAGTT+AGG | 0.480672 | 6_1:+97224271 | Msa0900980:CDS |
| TTGGCGAAATTGCTTGAGAA+TGG | 0.483449 | 6_1:+97221842 | Msa0900980:CDS |
| CGGCCAGCTTCAACAATTGG+TGG | 0.486545 | 6_1:+97223500 | Msa0900980:CDS |
| GATAAATCTCATATAGATAG+TGG | 0.491818 | 6_1:+97224486 | Msa0900980:CDS |
| CATTTCATGTCTCTTAAGAA+AGG | 0.493549 | 6_1:+97225299 | Msa0900980:CDS |
| ACCAATTGTTGAAGCTGGCC+GGG | 0.496330 | 6_1:-97223498 | None:intergenic |
| TCAACAATTGGTGGTTCTGT+TGG | 0.499150 | 6_1:+97223509 | Msa0900980:CDS |
| ATAATTTGAACTCGTATGAC+TGG | 0.499255 | 6_1:+97223795 | Msa0900980:CDS |
| GAATTGGAACATGGAATTCA+AGG | 0.501704 | 6_1:+97223177 | Msa0900980:CDS |
| AACAGAAGTTCATTTCCTAC+TGG | 0.502143 | 6_1:+97223148 | Msa0900980:CDS |
| CTTGTATATGCATCATGCAT+TGG | 0.510124 | 6_1:-97222910 | None:intergenic |
| ATCTGCTGATCGTGCATCCA+TGG | 0.510295 | 6_1:+97223222 | Msa0900980:CDS |
| AGCCTTGAACCAGGAGTCAC+AGG | 0.511418 | 6_1:-97225017 | None:intergenic |
| TTTCGAGGATAAAGCTATTG+AGG | 0.513129 | 6_1:+97221778 | Msa0900980:CDS |
| CATGGTTTGCAATCTGATCA+AGG | 0.515681 | 6_1:-97224239 | None:intergenic |
| GAAGTATGATTGTATGAACT+TGG | 0.517164 | 6_1:-97223875 | None:intergenic |
| GTTTCTAGGACCTTCGATGA+TGG | 0.518821 | 6_1:+97224207 | Msa0900980:CDS |
| AGGAGGTGGAAGTCAAGAAA+TGG | 0.518919 | 6_1:+97223102 | Msa0900980:intron |
| TACGAGTTCAAATTATCGTC+GGG | 0.519591 | 6_1:-97223788 | None:intergenic |
| TTGATCAGATTGCAAACCAT+GGG | 0.522736 | 6_1:+97224241 | Msa0900980:CDS |
| TGAACCGATAACAAGTCAAT+TGG | 0.523510 | 6_1:-97221669 | None:intergenic |
| TTGCAAACCATGGGGCTCTA+GGG | 0.525474 | 6_1:+97224250 | Msa0900980:CDS |
| GGAAGCGCTTCATCATGAAC+AGG | 0.526203 | 6_1:-97222856 | None:intergenic |
| GAACCACCAATTGTTGAAGC+TGG | 0.527544 | 6_1:-97223503 | None:intergenic |
| TAATCTGACCTAACTGAAGA+TGG | 0.527598 | 6_1:-97224279 | None:intergenic |
| AGCTATGGAATGTTGAAGGG+TGG | 0.529210 | 6_1:+97224519 | Msa0900980:CDS |
| TTCCATCCAAGCCTTGAACC+AGG | 0.529763 | 6_1:-97225026 | None:intergenic |
| AATTGTGACTTCATCTTCAA+GGG | 0.530595 | 6_1:+97225163 | Msa0900980:CDS |
| ATTAAGCTATGGAATGTTGA+AGG | 0.532941 | 6_1:+97224515 | Msa0900980:CDS |
| TACGAGTATACCGTACGTAT+TGG | 0.536318 | 6_1:-97221460 | None:intergenic |
| TTTCTTAAGAGACATGAAAT+GGG | 0.538974 | 6_1:-97225297 | None:intergenic |
| CAATAGCTTTATCCTCGAAA+CGG | 0.539057 | 6_1:-97221775 | None:intergenic |
| ACCGATAACAAGTCAATTGG+TGG | 0.539890 | 6_1:-97221666 | None:intergenic |
| TATCAGCCATTGGAGATCCA+TGG | 0.546189 | 6_1:-97223550 | None:intergenic |
| CTGTCTCACTATCTGAGCCT+GGG | 0.548942 | 6_1:-97224167 | None:intergenic |
| ACCAAATAGATCCTTGGGTG+AGG | 0.557024 | 6_1:+97225139 | Msa0900980:CDS |
| GATGATTCCGAATCAGATGA+TGG | 0.560077 | 6_1:+97223908 | Msa0900980:CDS |
| AATCGGGGAGGATCTAAGCC+TGG | 0.560852 | 6_1:+97225080 | Msa0900980:CDS |
| GAGGTAGAATGTGAATTAGG+AGG | 0.561033 | 6_1:-97222877 | None:intergenic |
| ACTGTCATCAGAATCAAAGA+AGG | 0.561343 | 6_1:-97224859 | None:intergenic |
| CACAATGAACAAATCATCAC+CGG | 0.562416 | 6_1:+97223404 | Msa0900980:CDS |
| ATCAGCCATTGGAGATCCAT+GGG | 0.567235 | 6_1:-97223549 | None:intergenic |
| GTTATCACTTTGAAGATGCA+AGG | 0.567958 | 6_1:+97223708 | Msa0900980:CDS |
| ATCTCATATAGATAGTGGTA+TGG | 0.568785 | 6_1:+97224491 | Msa0900980:CDS |
| TGGTGATCTGTATCAGCCAT+TGG | 0.570321 | 6_1:-97223560 | None:intergenic |
| GACAGAATTGCCATCATCGA+AGG | 0.571955 | 6_1:-97224217 | None:intergenic |
| GTATACTCGTAAGCCAGTTG+TGG | 0.572614 | 6_1:+97221472 | Msa0900980:CDS |
| GCTTGGATGGAAATCTTCAA+GGG | 0.574419 | 6_1:+97225037 | Msa0900980:CDS |
| AGTGGTATGGAATTAAGCTA+TGG | 0.576567 | 6_1:+97224504 | Msa0900980:CDS |
| CTCAGCTCATTCTTAATGCG+AGG | 0.576707 | 6_1:-97224798 | None:intergenic |
| ACAATTGAAAGCAGAAATGT+CGG | 0.576885 | 6_1:+97224693 | Msa0900980:CDS |
| AGAAAGTGTGTTAATGGCTA+TGG | 0.577213 | 6_1:+97221404 | None:intergenic |
| TATACTCGTAAGCCAGTTGT+GGG | 0.577599 | 6_1:+97221473 | Msa0900980:CDS |
| AGCAGATTCTGCAGCAGCAG+AGG | 0.578640 | 6_1:-97223206 | None:intergenic |
| TTATCGTCGGGATCATCACT+TGG | 0.579945 | 6_1:-97223776 | None:intergenic |
| AAGGTTGAAGTCCTAACTGT+AGG | 0.584084 | 6_1:-97224642 | None:intergenic |
| TGTTACTGAAGCAAGCTCAC+AGG | 0.585145 | 6_1:+97223850 | Msa0900980:CDS |
| TGGAATAAAGAGATGAGAAG+AGG | 0.589039 | 6_1:-97223756 | None:intergenic |
| GCTTCATCATGAACAGGTGG+TGG | 0.589424 | 6_1:-97222850 | None:intergenic |
| ATAACAAGTCAATTGGTGGC+TGG | 0.591053 | 6_1:-97221662 | None:intergenic |
| ATGCATTGGTTTAGGTTGTG+AGG | 0.592437 | 6_1:-97222896 | None:intergenic |
| CTGTCATCAGAATCAAAGAA+GGG | 0.595457 | 6_1:-97224858 | None:intergenic |
| AATAAAGAGATGAGAAGAGG+AGG | 0.597122 | 6_1:-97223753 | None:intergenic |
| ATACGAGTTCAAATTATCGT+CGG | 0.597241 | 6_1:-97223789 | None:intergenic |
| ACTCGTATGACTGGACAACT+GGG | 0.597323 | 6_1:+97223804 | Msa0900980:CDS |
| ATTTGCCCATGGATCTCCAA+TGG | 0.598473 | 6_1:+97223544 | Msa0900980:CDS |
| TGACTGGACAACTGGGAACA+AGG | 0.599632 | 6_1:+97223811 | Msa0900980:CDS |
| ATATCTAACTTGGAACTCAA+AGG | 0.600168 | 6_1:-97224417 | None:intergenic |
| ACCGGAGAACAAGATAATCT+GGG | 0.601308 | 6_1:+97223422 | Msa0900980:CDS |
| CTTGATCAGATTGCAAACCA+TGG | 0.605192 | 6_1:+97224240 | Msa0900980:CDS |
| GATGATGATAAGAAATACAA+TGG | 0.605416 | 6_1:+97223944 | Msa0900980:CDS |
| TTCTGATGACAGTGAATCTG+AGG | 0.618202 | 6_1:+97224869 | Msa0900980:CDS |
| TTAAGCTATGGAATGTTGAA+GGG | 0.618879 | 6_1:+97224516 | Msa0900980:CDS |
| GAAGTTCATTTCCTACTGGT+AGG | 0.625491 | 6_1:+97223152 | Msa0900980:CDS |
| TTTGATGATTCAGATGACCC+AGG | 0.628484 | 6_1:+97224150 | Msa0900980:intron |
| AAGGTGGATACCAATACGTA+CGG | 0.629325 | 6_1:+97221450 | Msa0900980:CDS |
| GATGTTAATCCATTTGCCCA+TGG | 0.633298 | 6_1:+97223533 | Msa0900980:CDS |
| TCATCTTGAAGAACTTATGG+AGG | 0.641192 | 6_1:+97222808 | Msa0900980:intron |
| CAGTAATAGTCATCAGAATG+TGG | 0.645955 | 6_1:+97223466 | Msa0900980:CDS |
| AATGGGACGTCCCAAAGCAG+AGG | 0.646637 | 6_1:-97221427 | None:intergenic |
| AGTCACAATTTCCTCACCCA+AGG | 0.646809 | 6_1:-97225150 | None:intergenic |
| AACATCATGCTGATGTTGAG+AGG | 0.651536 | 6_1:+97223672 | Msa0900980:CDS |
| TTTGGGACGTCCCATTAAGG+TGG | 0.654417 | 6_1:+97221434 | Msa0900980:CDS |
| AGCGCTTCATCATGAACAGG+TGG | 0.659963 | 6_1:-97222853 | None:intergenic |
| AGAATCAAAGAAGGGAATCG+AGG | 0.661274 | 6_1:-97224850 | None:intergenic |
| TGGTAGGCAGAATTGGAACA+TGG | 0.661914 | 6_1:+97223168 | Msa0900980:CDS |
| GTGACGACCCTAGAGCCCCA+TGG | 0.662984 | 6_1:-97224257 | None:intergenic |
| TTCCAATTCTGCCTACCAGT+AGG | 0.669787 | 6_1:-97223163 | None:intergenic |
| CTTGTTTAAATAAGTCATCG+TGG | 0.675205 | 6_1:-97223580 | None:intergenic |
| AAGCCAGTGAAATTCACGGA+CGG | 0.681360 | 6_1:-97225322 | None:intergenic |
| TACGAGAGCTCTGAAAATCG+GGG | 0.682953 | 6_1:+97225065 | Msa0900980:CDS |
| GTATTAGGAAGAGAACTGGA+AGG | 0.683110 | 6_1:-97225191 | None:intergenic |
| GAGCTTCAGATGAAGGAGTG+TGG | 0.686709 | 6_1:-97224995 | None:intergenic |
| TGATCAGATTGCAAACCATG+GGG | 0.716947 | 6_1:+97224242 | Msa0900980:CDS |
| GAGAGCTCTGAAAATCGGGG+AGG | 0.733303 | 6_1:+97225068 | Msa0900980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTATTACAAGTGT+TGG | + | chr6_1:97222217-97222236 | Msa0900980:intron | 15.0% |
| !!! | TAACTGTATTACTAATTTTT+AGG | + | chr6_1:97222295-97222314 | Msa0900980:intron | 15.0% |
| !! | AATTCTATAACAAAAGATTA+AGG | + | chr6_1:97222644-97222663 | Msa0900980:intron | 15.0% |
| !!! | TCTGATGTATTTTTAATATA+AGG | - | chr6_1:97224573-97224592 | None:intergenic | 15.0% |
| !!! | TTTTTAAACATTCAGTGTTA+GGG | - | chr6_1:97221983-97222002 | None:intergenic | 20.0% |
| !!! | TTTTTTAAACATTCAGTGTT+AGG | - | chr6_1:97221984-97222003 | None:intergenic | 20.0% |
| !! | AACAAATTATGTTACAATTG+TGG | - | chr6_1:97222268-97222287 | None:intergenic | 20.0% |
| !!! | ATTGTTTTCTTATAAGCTAT+AGG | + | chr6_1:97222772-97222791 | Msa0900980:intron | 20.0% |
| !! | ATCATTACAATTGAATATCT+AGG | + | chr6_1:97223039-97223058 | Msa0900980:intron | 20.0% |
| !!! | CTATTACTGTAATTTTCATT+GGG | - | chr6_1:97223455-97223474 | None:intergenic | 20.0% |
| !!! | ACTATTACTGTAATTTTCAT+TGG | - | chr6_1:97223456-97223475 | None:intergenic | 20.0% |
| !!! | CAAGAATTTGTATTTTCAAA+TGG | - | chr6_1:97224005-97224024 | None:intergenic | 20.0% |
| !! | CATTTGAAAATACAAATTCT+TGG | + | chr6_1:97224003-97224022 | Msa0900980:intron | 20.0% |
| !!! | GATGTATTTTTAATATAAGG+TGG | - | chr6_1:97224570-97224589 | None:intergenic | 20.0% |
| ! | ATCAATTGAAGAGAGAATAT+TGG | + | chr6_1:97221823-97221842 | Msa0900980:CDS | 25.0% |
| !!! | ATTTTGTGTTACTGATTGTT+AGG | + | chr6_1:97221930-97221949 | Msa0900980:intron | 25.0% |
| ! | ACTGATAACTGCTATAAAAA+AGG | + | chr6_1:97222118-97222137 | Msa0900980:intron | 25.0% |
| ! | TTAAAAAATACCTGAAGATC+TGG | - | chr6_1:97223013-97223032 | None:intergenic | 25.0% |
| ! | GATGATGATAAGAAATACAA+TGG | + | chr6_1:97223944-97223963 | Msa0900980:CDS | 25.0% |
| !! | ATTTTCAAATGGATCAACTT+GGG | - | chr6_1:97223994-97224013 | None:intergenic | 25.0% |
| !! | TATTTTCAAATGGATCAACT+TGG | - | chr6_1:97223995-97224014 | None:intergenic | 25.0% |
| !!! | CGTAAATTTTTCAGAAACAA+CGG | - | chr6_1:97224087-97224106 | None:intergenic | 25.0% |
| ! | AATACGTCAGAAAAAAGTTA+TGG | + | chr6_1:97224339-97224358 | Msa0900980:intron | 25.0% |
| ! | TCAGCATCATCAAAATTATT+AGG | - | chr6_1:97224459-97224478 | None:intergenic | 25.0% |
| ! | GATAAATCTCATATAGATAG+TGG | + | chr6_1:97224486-97224505 | Msa0900980:CDS | 25.0% |
| ! | ATTGTATATTTGTCATGAAC+AGG | - | chr6_1:97224678-97224697 | None:intergenic | 25.0% |
| ! | CAAAAAAGAAATCAAGTTCA+CGG | + | chr6_1:97224826-97224845 | Msa0900980:CDS | 25.0% |
| ! | AAAAAAGAAATCAAGTTCAC+GGG | + | chr6_1:97224827-97224846 | Msa0900980:CDS | 25.0% |
| ! | CTATCTTGTATATCTGTATT+AGG | - | chr6_1:97225209-97225228 | None:intergenic | 25.0% |
| ! | GAATCATAATCAGGTAAATT+TGG | - | chr6_1:97225269-97225288 | None:intergenic | 25.0% |
| ! | TTTCTTAAGAGACATGAAAT+GGG | - | chr6_1:97225300-97225319 | None:intergenic | 25.0% |
| ATGAGAAAGGTTGAATATGA+AGG | + | chr6_1:97221506-97221525 | Msa0900980:intron | 30.0% | |
| TTGAATATGAAGGTTTGCAT+AGG | + | chr6_1:97221516-97221535 | Msa0900980:intron | 30.0% | |
| AAGATCAAACTGCTAGAATT+CGG | + | chr6_1:97221867-97221886 | Msa0900980:CDS | 30.0% | |
| ! | ATGCTTTAAATTAGAAGTGC+TGG | + | chr6_1:97222470-97222489 | Msa0900980:intron | 30.0% |
| AATCAAAATCCCATATGTAG+CGG | - | chr6_1:97222511-97222530 | None:intergenic | 30.0% | |
| ! | TGTGTTGATGAAGAATAAAC+AGG | + | chr6_1:97222533-97222552 | Msa0900980:intron | 30.0% |
| ! | GTGTTGATGAAGAATAAACA+GGG | + | chr6_1:97222534-97222553 | Msa0900980:intron | 30.0% |
| ! | TGTTGATGAAGAATAAACAG+GGG | + | chr6_1:97222535-97222554 | Msa0900980:intron | 30.0% |
| AAAACGTAATCATGTGCTTA+TGG | + | chr6_1:97222575-97222594 | Msa0900980:intron | 30.0% | |
| CAAAAGATTAAGGTCATGTT+TGG | + | chr6_1:97222654-97222673 | Msa0900980:intron | 30.0% | |
| AAGTCATCTTGAAGAACTTA+TGG | + | chr6_1:97222805-97222824 | Msa0900980:intron | 30.0% | |
| CAAATCGTGAAAACATGAAA+AGG | + | chr6_1:97223269-97223288 | Msa0900980:intron | 30.0% | |
| CTTGTTTAAATAAGTCATCG+TGG | - | chr6_1:97223583-97223602 | None:intergenic | 30.0% | |
| ATACGAGTTCAAATTATCGT+CGG | - | chr6_1:97223792-97223811 | None:intergenic | 30.0% | |
| ATAATTTGAACTCGTATGAC+TGG | + | chr6_1:97223795-97223814 | Msa0900980:CDS | 30.0% | |
| GAAGTATGATTGTATGAACT+TGG | - | chr6_1:97223878-97223897 | None:intergenic | 30.0% | |
| ATAATCACCATCATCTGATT+CGG | - | chr6_1:97223918-97223937 | None:intergenic | 30.0% | |
| GATGATAAGAAATACAATGG+TGG | + | chr6_1:97223947-97223966 | Msa0900980:intron | 30.0% | |
| ! | TTGTTAAGTCTAGAGTTTCT+AGG | + | chr6_1:97224193-97224212 | Msa0900980:CDS | 30.0% |
| ATATCTAACTTGGAACTCAA+AGG | - | chr6_1:97224420-97224439 | None:intergenic | 30.0% | |
| CAATGTATGGATATCTAACT+TGG | - | chr6_1:97224430-97224449 | None:intergenic | 30.0% | |
| !!! | TTTTGATGATGCTGAAACTT+CGG | + | chr6_1:97224464-97224483 | Msa0900980:CDS | 30.0% |
| ! | ATCTCATATAGATAGTGGTA+TGG | + | chr6_1:97224491-97224510 | Msa0900980:CDS | 30.0% |
| ATTAAGCTATGGAATGTTGA+AGG | + | chr6_1:97224515-97224534 | Msa0900980:CDS | 30.0% | |
| TTAAGCTATGGAATGTTGAA+GGG | + | chr6_1:97224516-97224535 | Msa0900980:CDS | 30.0% | |
| GATGATGTTTCAACTTCATT+AGG | + | chr6_1:97224591-97224610 | Msa0900980:CDS | 30.0% | |
| ACAATTGAAAGCAGAAATGT+CGG | + | chr6_1:97224693-97224712 | Msa0900980:CDS | 30.0% | |
| TGATTCTGATAGTTATGATC+TGG | + | chr6_1:97224740-97224759 | Msa0900980:CDS | 30.0% | |
| ! | CTTAAAACTGTACAGGTTTT+TGG | - | chr6_1:97224969-97224988 | None:intergenic | 30.0% |
| !! | GATCTATTTGGTTCTGAAAT+TGG | - | chr6_1:97225131-97225150 | None:intergenic | 30.0% |
| AAATTGTGACTTCATCTTCA+AGG | + | chr6_1:97225162-97225181 | Msa0900980:CDS | 30.0% | |
| AATTGTGACTTCATCTTCAA+GGG | + | chr6_1:97225163-97225182 | Msa0900980:CDS | 30.0% | |
| CTTTCTTAAGAGACATGAAA+TGG | - | chr6_1:97225301-97225320 | None:intergenic | 30.0% | |
| CATTTCATGTCTCTTAAGAA+AGG | + | chr6_1:97225299-97225318 | Msa0900980:CDS | 30.0% | |
| ! | GTATTGGTATCCACCTTAAT+GGG | - | chr6_1:97221447-97221466 | None:intergenic | 35.0% |
| TGAACCGATAACAAGTCAAT+TGG | - | chr6_1:97221672-97221691 | None:intergenic | 35.0% | |
| GTTAGTTGCGTTATCATCTT+TGG | - | chr6_1:97221731-97221750 | None:intergenic | 35.0% | |
| !! | CAATAGCTTTATCCTCGAAA+CGG | - | chr6_1:97221778-97221797 | None:intergenic | 35.0% |
| TTTCGAGGATAAAGCTATTG+AGG | + | chr6_1:97221778-97221797 | Msa0900980:CDS | 35.0% | |
| AGATCAAACTGCTAGAATTC+GGG | + | chr6_1:97221868-97221887 | Msa0900980:CDS | 35.0% | |
| TTGAATGTAATGACATGCGT+CGG | + | chr6_1:97222018-97222037 | Msa0900980:intron | 35.0% | |
| ! | TGTAATGACATGTGTTGATG+CGG | + | chr6_1:97222152-97222171 | Msa0900980:intron | 35.0% |
| TGTTAGATACTGACACTTGT+TGG | + | chr6_1:97222439-97222458 | Msa0900980:intron | 35.0% | |
| ! | AGTTCTAATCCGCTACATAT+GGG | + | chr6_1:97222499-97222518 | Msa0900980:intron | 35.0% |
| ! | GTTGATGAAGAATAAACAGG+GGG | + | chr6_1:97222536-97222555 | Msa0900980:intron | 35.0% |
| TTGATGAAGAATAAACAGGG+GGG | + | chr6_1:97222537-97222556 | Msa0900980:intron | 35.0% | |
| TCATCTTGAAGAACTTATGG+AGG | + | chr6_1:97222808-97222827 | Msa0900980:intron | 35.0% | |
| TGTGAGGTAGAATGTGAATT+AGG | - | chr6_1:97222883-97222902 | None:intergenic | 35.0% | |
| !! | TATGCATCATGCATTGGTTT+AGG | - | chr6_1:97222907-97222926 | None:intergenic | 35.0% |
| CTTGTATATGCATCATGCAT+TGG | - | chr6_1:97222913-97222932 | None:intergenic | 35.0% | |
| GCTAATAACTCTACAACATC+AGG | + | chr6_1:97222970-97222989 | Msa0900980:CDS | 35.0% | |
| ! | GAAGATCTGGTTTCAGTATT+AGG | - | chr6_1:97223000-97223019 | None:intergenic | 35.0% |
| AATACTGAAACCAGATCTTC+AGG | + | chr6_1:97223000-97223019 | Msa0900980:CDS | 35.0% | |
| TTCTGCACATTACCTGAATA+TGG | + | chr6_1:97223068-97223087 | Msa0900980:intron | 35.0% | |
| TGCGAAAAGAATCCATATTC+AGG | - | chr6_1:97223083-97223102 | None:intergenic | 35.0% | |
| ! | TGAATATGGATTCTTTTCGC+AGG | + | chr6_1:97223082-97223101 | Msa0900980:intron | 35.0% |
| AACAGAAGTTCATTTCCTAC+TGG | + | chr6_1:97223148-97223167 | Msa0900980:CDS | 35.0% | |
| GAATTGGAACATGGAATTCA+AGG | + | chr6_1:97223177-97223196 | Msa0900980:CDS | 35.0% | |
| !!! | AATCCCAGAACTGCTTTTTA+CGG | - | chr6_1:97223384-97223403 | None:intergenic | 35.0% |
| CACAATGAACAAATCATCAC+CGG | + | chr6_1:97223404-97223423 | Msa0900980:CDS | 35.0% | |
| AACAAGATAATCTGGGTAGA+AGG | + | chr6_1:97223429-97223448 | Msa0900980:CDS | 35.0% | |
| CAGTAATAGTCATCAGAATG+TGG | + | chr6_1:97223466-97223485 | Msa0900980:CDS | 35.0% | |
| ! | GTTATCACTTTGAAGATGCA+AGG | + | chr6_1:97223708-97223727 | Msa0900980:CDS | 35.0% |
| AATAAAGAGATGAGAAGAGG+AGG | - | chr6_1:97223756-97223775 | None:intergenic | 35.0% | |
| TGGAATAAAGAGATGAGAAG+AGG | - | chr6_1:97223759-97223778 | None:intergenic | 35.0% | |
| TACGAGTTCAAATTATCGTC+GGG | - | chr6_1:97223791-97223810 | None:intergenic | 35.0% | |
| AGTAACAAAAAGGTCTTCTG+CGG | - | chr6_1:97223837-97223856 | None:intergenic | 35.0% | |
| ! | AGCTTGCTTCAGTAACAAAA+AGG | - | chr6_1:97223847-97223866 | None:intergenic | 35.0% |
| GATAAGAAATACAATGGTGG+TGG | + | chr6_1:97223950-97223969 | Msa0900980:intron | 35.0% | |
| AATACAAATTCTTGGAGCCA+TGG | + | chr6_1:97224011-97224030 | Msa0900980:intron | 35.0% | |
| TCTGAATCATCAAAAGTGGT+AGG | - | chr6_1:97224144-97224163 | None:intergenic | 35.0% | |
| GTCATCTGAATCATCAAAAG+TGG | - | chr6_1:97224148-97224167 | None:intergenic | 35.0% | |
| TTGATCAGATTGCAAACCAT+GGG | + | chr6_1:97224241-97224260 | Msa0900980:CDS | 35.0% | |
| TAATCTGACCTAACTGAAGA+TGG | - | chr6_1:97224282-97224301 | None:intergenic | 35.0% | |
| TTCAGTTAGGTCAGATTAAG+TGG | + | chr6_1:97224284-97224303 | Msa0900980:intron | 35.0% | |
| TATTAGGTGACTGCAATGTA+TGG | - | chr6_1:97224443-97224462 | None:intergenic | 35.0% | |
| AGTGGTATGGAATTAAGCTA+TGG | + | chr6_1:97224504-97224523 | Msa0900980:CDS | 35.0% | |
| ATGAAAGATTGCCTACAGTT+AGG | + | chr6_1:97224631-97224650 | Msa0900980:CDS | 35.0% | |
| !! | ATGAACAGGAGCATCAAAAA+AGG | - | chr6_1:97224664-97224683 | None:intergenic | 35.0% |
| CTGTCATCAGAATCAAAGAA+GGG | - | chr6_1:97224861-97224880 | None:intergenic | 35.0% | |
| ACTGTCATCAGAATCAAAGA+AGG | - | chr6_1:97224862-97224881 | None:intergenic | 35.0% | |
| GTTAGAGCTTAAAACTGTAC+AGG | - | chr6_1:97224976-97224995 | None:intergenic | 35.0% | |
| TTCAGAACCAAATAGATCCT+TGG | + | chr6_1:97225133-97225152 | Msa0900980:CDS | 35.0% | |
| TCAGAACCAAATAGATCCTT+GGG | + | chr6_1:97225134-97225153 | Msa0900980:CDS | 35.0% | |
| ATCTGTATTAGGAAGAGAAC+TGG | - | chr6_1:97225198-97225217 | None:intergenic | 35.0% | |
| GCAGCAAATGAATCATAATC+AGG | - | chr6_1:97225278-97225297 | None:intergenic | 35.0% | |
| ! | CGTATTGGTATCCACCTTAA+TGG | - | chr6_1:97221448-97221467 | None:intergenic | 40.0% |
| AAGGTGGATACCAATACGTA+CGG | + | chr6_1:97221450-97221469 | Msa0900980:CDS | 40.0% | |
| TACGAGTATACCGTACGTAT+TGG | - | chr6_1:97221463-97221482 | None:intergenic | 40.0% | |
| TATACTCGTAAGCCAGTTGT+GGG | + | chr6_1:97221473-97221492 | Msa0900980:CDS | 40.0% | |
| ATCCATACTTTACCCACAAC+TGG | - | chr6_1:97221488-97221507 | None:intergenic | 40.0% | |
| GGGTAAAGTATGGATGAGAA+AGG | + | chr6_1:97221493-97221512 | Msa0900980:intron | 40.0% | |
| CATAGGATATGTACTCTGTG+TGG | + | chr6_1:97221533-97221552 | Msa0900980:intron | 40.0% | |
| ! | ATAACAAGTCAATTGGTGGC+TGG | - | chr6_1:97221665-97221684 | None:intergenic | 40.0% |
| !! | GCCACCAATTGACTTGTTAT+CGG | + | chr6_1:97221665-97221684 | Msa0900980:CDS | 40.0% |
| ACCGATAACAAGTCAATTGG+TGG | - | chr6_1:97221669-97221688 | None:intergenic | 40.0% | |
| ! | GTTATCATCTTTGGTGGCAA+GGG | - | chr6_1:97221722-97221741 | None:intergenic | 40.0% |
| AGTTGCGTTATCATCTTTGG+TGG | - | chr6_1:97221728-97221747 | None:intergenic | 40.0% | |
| ACGCAACTAACGCTATTGAA+CGG | + | chr6_1:97221740-97221759 | Msa0900980:intron | 40.0% | |
| TTGGCGAAATTGCTTGAGAA+TGG | + | chr6_1:97221842-97221861 | Msa0900980:CDS | 40.0% | |
| GGTTTGTATTGTTCAGACAC+CGG | + | chr6_1:97221951-97221970 | Msa0900980:intron | 40.0% | |
| GACACTGACACACTGAATAA+TGG | + | chr6_1:97222362-97222381 | Msa0900980:intron | 40.0% | |
| ! | CAGTTCTAATCCGCTACATA+TGG | + | chr6_1:97222498-97222517 | Msa0900980:intron | 40.0% |
| GAATAAACAGGGGGGATATT+TGG | + | chr6_1:97222545-97222564 | Msa0900980:intron | 40.0% | |
| GAGGTAGAATGTGAATTAGG+AGG | - | chr6_1:97222880-97222899 | None:intergenic | 40.0% | |
| !! | ATGCATTGGTTTAGGTTGTG+AGG | - | chr6_1:97222899-97222918 | None:intergenic | 40.0% |
| ! | ATATGGATTCTTTTCGCAGG+AGG | + | chr6_1:97223085-97223104 | Msa0900980:intron | 40.0% |
| GAAGTTCATTTCCTACTGGT+AGG | + | chr6_1:97223152-97223171 | Msa0900980:CDS | 40.0% | |
| ATGAAAAGGCAGCATTCAAG+TGG | + | chr6_1:97223283-97223302 | Msa0900980:intron | 40.0% | |
| ACAAAACCAGAAGAGTCTGT+AGG | - | chr6_1:97223349-97223368 | None:intergenic | 40.0% | |
| !!! | AGAACTGCTTTTTACGGATG+GGG | - | chr6_1:97223378-97223397 | None:intergenic | 40.0% |
| !!! | CAGAACTGCTTTTTACGGAT+GGG | - | chr6_1:97223379-97223398 | None:intergenic | 40.0% |
| CATCCGTAAAAAGCAGTTCT+GGG | + | chr6_1:97223378-97223397 | Msa0900980:CDS | 40.0% | |
| ACCGGAGAACAAGATAATCT+GGG | + | chr6_1:97223422-97223441 | Msa0900980:CDS | 40.0% | |
| ACCCAGATTATCTTGTTCTC+CGG | - | chr6_1:97223426-97223445 | None:intergenic | 40.0% | |
| AGAATGTGGTGAAAGATTCC+CGG | + | chr6_1:97223480-97223499 | Msa0900980:CDS | 40.0% | |
| ! | TCAACAATTGGTGGTTCTGT+TGG | + | chr6_1:97223509-97223528 | Msa0900980:CDS | 40.0% |
| GATGTTAATCCATTTGCCCA+TGG | + | chr6_1:97223533-97223552 | Msa0900980:CDS | 40.0% | |
| AACATCATGCTGATGTTGAG+AGG | + | chr6_1:97223672-97223691 | Msa0900980:CDS | 40.0% | |
| GCAAGGACAAATAGACAATC+TGG | + | chr6_1:97223725-97223744 | Msa0900980:CDS | 40.0% | |
| GATGATTCCGAATCAGATGA+TGG | + | chr6_1:97223908-97223927 | Msa0900980:CDS | 40.0% | |
| !! | AAATACAATGGTGGTGGATC+TGG | + | chr6_1:97223956-97223975 | Msa0900980:intron | 40.0% |
| !! | AATACAATGGTGGTGGATCT+GGG | + | chr6_1:97223957-97223976 | Msa0900980:intron | 40.0% |
| !!! | TCACATCAGTGCTTTTTCCA+TGG | - | chr6_1:97224031-97224050 | None:intergenic | 40.0% |
| ! | TTTGATGATTCAGATGACCC+AGG | + | chr6_1:97224150-97224169 | Msa0900980:intron | 40.0% |
| ! | CATGGTTTGCAATCTGATCA+AGG | - | chr6_1:97224242-97224261 | None:intergenic | 40.0% |
| CTTGATCAGATTGCAAACCA+TGG | + | chr6_1:97224240-97224259 | Msa0900980:CDS | 40.0% | |
| TGATCAGATTGCAAACCATG+GGG | + | chr6_1:97224242-97224261 | Msa0900980:CDS | 40.0% | |
| !! | GGAAGAGCATTCTGTGAAAA+AGG | + | chr6_1:97224305-97224324 | Msa0900980:intron | 40.0% |
| !! | GAGTTTCTTGCTGTTGAAGA+TGG | - | chr6_1:97224390-97224409 | None:intergenic | 40.0% |
| ! | AAGGGTGGTTTTCGCAATAA+AGG | + | chr6_1:97224534-97224553 | Msa0900980:CDS | 40.0% |
| AAGGTTGAAGTCCTAACTGT+AGG | - | chr6_1:97224645-97224664 | None:intergenic | 40.0% | |
| CGAGGTTCATGAATGCTAAT+GGG | - | chr6_1:97224783-97224802 | None:intergenic | 40.0% | |
| AGAATCAAAGAAGGGAATCG+AGG | - | chr6_1:97224853-97224872 | None:intergenic | 40.0% | |
| TTCTGATGACAGTGAATCTG+AGG | + | chr6_1:97224869-97224888 | Msa0900980:CDS | 40.0% | |
| CTTCGAGATACTCTACTAAC+AGG | - | chr6_1:97224933-97224952 | None:intergenic | 40.0% | |
| GCTTGGATGGAAATCTTCAA+GGG | + | chr6_1:97225037-97225056 | Msa0900980:CDS | 40.0% | |
| !! | CTTACGAGAGCTCTGAAAAT+CGG | + | chr6_1:97225063-97225082 | Msa0900980:CDS | 40.0% |
| !! | TTACGAGAGCTCTGAAAATC+GGG | + | chr6_1:97225064-97225083 | Msa0900980:CDS | 40.0% |
| ! | ACTTCATTTTCTGCTGATCC+AGG | - | chr6_1:97225101-97225120 | None:intergenic | 40.0% |
| GTATTAGGAAGAGAACTGGA+AGG | - | chr6_1:97225194-97225213 | None:intergenic | 40.0% | |
| GTATACTCGTAAGCCAGTTG+TGG | + | chr6_1:97221472-97221491 | Msa0900980:CDS | 45.0% | |
| AGCCAGTTGTGGGTAAAGTA+TGG | + | chr6_1:97221483-97221502 | Msa0900980:intron | 45.0% | |
| CTCTGTGTGGTTGTTACGTA+CGG | + | chr6_1:97221546-97221565 | Msa0900980:intron | 45.0% | |
| TTACGTACGGTCATTTGTCC+AGG | + | chr6_1:97221559-97221578 | Msa0900980:intron | 45.0% | |
| TACGTACGGTCATTTGTCCA+GGG | + | chr6_1:97221560-97221579 | Msa0900980:intron | 45.0% | |
| ! | TGGTGGCTGGTCATTGTTTA+TGG | - | chr6_1:97221652-97221671 | None:intergenic | 45.0% |
| ! | CGTTATCATCTTTGGTGGCA+AGG | - | chr6_1:97221723-97221742 | None:intergenic | 45.0% |
| TGTCAAACAGTGACACGTGT+TGG | + | chr6_1:97222041-97222060 | Msa0900980:intron | 45.0% | |
| CGGTGTTTGTGCTTCATCAT+AGG | - | chr6_1:97222337-97222356 | None:intergenic | 45.0% | |
| !!! | CAGTGTGTCAGTGTCGTTTT+CGG | - | chr6_1:97222357-97222376 | None:intergenic | 45.0% |
| TGCAAATGCTGCTGCTAGAA+AGG | + | chr6_1:97222948-97222967 | Msa0900980:CDS | 45.0% | |
| AGGAGGTGGAAGTCAAGAAA+TGG | + | chr6_1:97223102-97223121 | Msa0900980:intron | 45.0% | |
| TTCCTACTGGTAGGCAGAAT+TGG | + | chr6_1:97223161-97223180 | Msa0900980:CDS | 45.0% | |
| TTCCAATTCTGCCTACCAGT+AGG | - | chr6_1:97223166-97223185 | None:intergenic | 45.0% | |
| TGGTAGGCAGAATTGGAACA+TGG | + | chr6_1:97223168-97223187 | Msa0900980:CDS | 45.0% | |
| ATCACATAGCTCTCCTGGAA+GGG | + | chr6_1:97223306-97223325 | Msa0900980:intron | 45.0% | |
| !!! | CCAGAACTGCTTTTTACGGA+TGG | - | chr6_1:97223380-97223399 | None:intergenic | 45.0% |
| CCATCCGTAAAAAGCAGTTC+TGG | + | chr6_1:97223377-97223396 | Msa0900980:CDS | 45.0% | |
| CACCGGAGAACAAGATAATC+TGG | + | chr6_1:97223421-97223440 | Msa0900980:CDS | 45.0% | |
| GAACCACCAATTGTTGAAGC+TGG | - | chr6_1:97223506-97223525 | None:intergenic | 45.0% | |
| ATTGGAGATCCATGGGCAAA+TGG | - | chr6_1:97223545-97223564 | None:intergenic | 45.0% | |
| ATTTGCCCATGGATCTCCAA+TGG | + | chr6_1:97223544-97223563 | Msa0900980:CDS | 45.0% | |
| ATCAGCCATTGGAGATCCAT+GGG | - | chr6_1:97223552-97223571 | None:intergenic | 45.0% | |
| TATCAGCCATTGGAGATCCA+TGG | - | chr6_1:97223553-97223572 | None:intergenic | 45.0% | |
| TGGTGATCTGTATCAGCCAT+TGG | - | chr6_1:97223563-97223582 | None:intergenic | 45.0% | |
| TTATCGTCGGGATCATCACT+TGG | - | chr6_1:97223779-97223798 | None:intergenic | 45.0% | |
| AACTCGTATGACTGGACAAC+TGG | + | chr6_1:97223803-97223822 | Msa0900980:CDS | 45.0% | |
| ACTCGTATGACTGGACAACT+GGG | + | chr6_1:97223804-97223823 | Msa0900980:CDS | 45.0% | |
| TGTTACTGAAGCAAGCTCAC+AGG | + | chr6_1:97223850-97223869 | Msa0900980:CDS | 45.0% | |
| GATGTGAAAGACACGAGTTC+TGG | + | chr6_1:97224044-97224063 | Msa0900980:intron | 45.0% | |
| CATCAAAAGTGGTAGGCAGT+GGG | - | chr6_1:97224137-97224156 | None:intergenic | 45.0% | |
| TCATCAAAAGTGGTAGGCAG+TGG | - | chr6_1:97224138-97224157 | None:intergenic | 45.0% | |
| !! | GTTTCTAGGACCTTCGATGA+TGG | + | chr6_1:97224207-97224226 | Msa0900980:CDS | 45.0% |
| GACAGAATTGCCATCATCGA+AGG | - | chr6_1:97224220-97224239 | None:intergenic | 45.0% | |
| AGCTATGGAATGTTGAAGGG+TGG | + | chr6_1:97224519-97224538 | Msa0900980:CDS | 45.0% | |
| GCGAGGTTCATGAATGCTAA+TGG | - | chr6_1:97224784-97224803 | None:intergenic | 45.0% | |
| CTCAGCTCATTCTTAATGCG+AGG | - | chr6_1:97224801-97224820 | None:intergenic | 45.0% | |
| GGCTTGGATGGAAATCTTCA+AGG | + | chr6_1:97225036-97225055 | Msa0900980:CDS | 45.0% | |
| !! | TACGAGAGCTCTGAAAATCG+GGG | + | chr6_1:97225065-97225084 | Msa0900980:CDS | 45.0% |
| ACCAAATAGATCCTTGGGTG+AGG | + | chr6_1:97225139-97225158 | Msa0900980:CDS | 45.0% | |
| TCCTCACCCAAGGATCTATT+TGG | - | chr6_1:97225143-97225162 | None:intergenic | 45.0% | |
| AGTCACAATTTCCTCACCCA+AGG | - | chr6_1:97225153-97225172 | None:intergenic | 45.0% | |
| ATGGCTATGGCCTCTGCTTT+GGG | + | chr6_1:97221417-97221436 | Msa0900980:CDS | 50.0% | |
| !! | TGCTTTGGGACGTCCCATTA+AGG | + | chr6_1:97221431-97221450 | Msa0900980:CDS | 50.0% |
| ! | TTTGGGACGTCCCATTAAGG+TGG | + | chr6_1:97221434-97221453 | Msa0900980:CDS | 50.0% |
| CAGCTTCTTGCTTCTGCGTA+TGG | - | chr6_1:97221596-97221615 | None:intergenic | 50.0% | |
| !! | AAGGGTTCTGAGTGACCCTT+TGG | - | chr6_1:97221704-97221723 | None:intergenic | 50.0% |
| ! | CATTGAAGCTTGCCGTTTCG+AGG | + | chr6_1:97221763-97221782 | Msa0900980:intron | 50.0% |
| TTCAGTGTTAGGGTCGCATC+CGG | - | chr6_1:97221973-97221992 | None:intergenic | 50.0% | |
| !! | AGTGTCGACATGTCAGTGTC+AGG | - | chr6_1:97222101-97222120 | None:intergenic | 50.0% |
| GCGGTGTATGTGTCAGACAA+TGG | + | chr6_1:97222171-97222190 | Msa0900980:intron | 50.0% | |
| GCTTCATCATGAACAGGTGG+TGG | - | chr6_1:97222853-97222872 | None:intergenic | 50.0% | |
| AGCGCTTCATCATGAACAGG+TGG | - | chr6_1:97222856-97222875 | None:intergenic | 50.0% | |
| !! | GGAAGCGCTTCATCATGAAC+AGG | - | chr6_1:97222859-97222878 | None:intergenic | 50.0% |
| ! | TGGATTCTTTTCGCAGGAGG+TGG | + | chr6_1:97223088-97223107 | Msa0900980:intron | 50.0% |
| ATCTGCTGATCGTGCATCCA+TGG | + | chr6_1:97223222-97223241 | Msa0900980:CDS | 50.0% | |
| AGTGGATCACATAGCTCTCC+TGG | + | chr6_1:97223301-97223320 | Msa0900980:intron | 50.0% | |
| GATCACATAGCTCTCCTGGA+AGG | + | chr6_1:97223305-97223324 | Msa0900980:intron | 50.0% | |
| TCACATAGCTCTCCTGGAAG+GGG | + | chr6_1:97223307-97223326 | Msa0900980:intron | 50.0% | |
| ! | GAAGCACCTACAGACTCTTC+TGG | + | chr6_1:97223340-97223359 | Msa0900980:intron | 50.0% |
| ACCAATTGTTGAAGCTGGCC+GGG | - | chr6_1:97223501-97223520 | None:intergenic | 50.0% | |
| CACCAATTGTTGAAGCTGGC+CGG | - | chr6_1:97223502-97223521 | None:intergenic | 50.0% | |
| TGACTGGACAACTGGGAACA+AGG | + | chr6_1:97223811-97223830 | Msa0900980:CDS | 50.0% | |
| CTGTCTCACTATCTGAGCCT+GGG | - | chr6_1:97224170-97224189 | None:intergenic | 50.0% | |
| TCTGTCTCACTATCTGAGCC+TGG | - | chr6_1:97224171-97224190 | None:intergenic | 50.0% | |
| ATTGCAAACCATGGGGCTCT+AGG | + | chr6_1:97224249-97224268 | Msa0900980:CDS | 50.0% | |
| TTGCAAACCATGGGGCTCTA+GGG | + | chr6_1:97224250-97224269 | Msa0900980:CDS | 50.0% | |
| GGTCGTCACCATCTTCAGTT+AGG | + | chr6_1:97224271-97224290 | Msa0900980:CDS | 50.0% | |
| GAGCTTCAGATGAAGGAGTG+TGG | - | chr6_1:97224998-97225017 | None:intergenic | 50.0% | |
| GTCACAGGAGCTTCAGATGA+AGG | - | chr6_1:97225005-97225024 | None:intergenic | 50.0% | |
| TTCCATCCAAGCCTTGAACC+AGG | - | chr6_1:97225029-97225048 | None:intergenic | 50.0% | |
| AATGGGACGTCCCAAAGCAG+AGG | - | chr6_1:97221430-97221449 | None:intergenic | 55.0% | |
| CGTATGGTTGTTGCACTCCC+TGG | - | chr6_1:97221580-97221599 | None:intergenic | 55.0% | |
| TCTGAGTGACCCTTTGGCAG+CGG | - | chr6_1:97221698-97221717 | None:intergenic | 55.0% | |
| AGCAGATTCTGCAGCAGCAG+AGG | - | chr6_1:97223209-97223228 | None:intergenic | 55.0% | |
| CACATAGCTCTCCTGGAAGG+GGG | + | chr6_1:97223308-97223327 | Msa0900980:intron | 55.0% | |
| TCCCGGCCAGCTTCAACAAT+TGG | + | chr6_1:97223497-97223516 | Msa0900980:CDS | 55.0% | |
| CGGCCAGCTTCAACAATTGG+TGG | + | chr6_1:97223500-97223519 | Msa0900980:CDS | 55.0% | |
| ! | TCTGAAGCTCCTGTGACTCC+TGG | + | chr6_1:97225008-97225027 | Msa0900980:CDS | 55.0% |
| CTCCTGTGACTCCTGGTTCA+AGG | + | chr6_1:97225015-97225034 | Msa0900980:CDS | 55.0% | |
| AGCCTTGAACCAGGAGTCAC+AGG | - | chr6_1:97225020-97225039 | None:intergenic | 55.0% | |
| GTGACTCCTGGTTCAAGGCT+TGG | + | chr6_1:97225020-97225039 | Msa0900980:CDS | 55.0% | |
| CTCCTGGTTCAAGGCTTGGA+TGG | + | chr6_1:97225024-97225043 | Msa0900980:CDS | 55.0% | |
| !! | GAGAGCTCTGAAAATCGGGG+AGG | + | chr6_1:97225068-97225087 | Msa0900980:CDS | 55.0% |
| AATCGGGGAGGATCTAAGCC+TGG | + | chr6_1:97225080-97225099 | Msa0900980:CDS | 55.0% | |
| GGTTCAGCACCGCTGCCAAA+GGG | + | chr6_1:97221686-97221705 | Msa0900980:intron | 60.0% | |
| TGCAGCTGCTCTTGCAGCCA+TGG | - | chr6_1:97223242-97223261 | None:intergenic | 60.0% | |
| TCATCTCGTGACCCCCTTCC+AGG | - | chr6_1:97223322-97223341 | None:intergenic | 60.0% | |
| CGGTTCAGCACCGCTGCCAA+AGG | + | chr6_1:97221685-97221704 | Msa0900980:intron | 65.0% | |
| GTGACGACCCTAGAGCCCCA+TGG | - | chr6_1:97224260-97224279 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 97221417 | 97225331 | 97221417 | ID=Msa0900980;Name=Msa0900980 |
| chr6_1 | mRNA | 97221417 | 97225331 | 97221417 | ID=Msa0900980-mRNA-1;Parent=Msa0900980;Name=Msa0900980-mRNA-1;_AED=0.15;_eAED=0.17;_QI=0|0.14|0|0.75|1|1|8|0|783 |
| chr6_1 | exon | 97221417 | 97221499 | 97221417 | ID=Msa0900980-mRNA-1:exon:16996;Parent=Msa0900980-mRNA-1 |
| chr6_1 | exon | 97221581 | 97221686 | 97221581 | ID=Msa0900980-mRNA-1:exon:16997;Parent=Msa0900980-mRNA-1 |
| chr6_1 | exon | 97221771 | 97221889 | 97221771 | ID=Msa0900980-mRNA-1:exon:16998;Parent=Msa0900980-mRNA-1 |
| chr6_1 | exon | 97222819 | 97223021 | 97222819 | ID=Msa0900980-mRNA-1:exon:16999;Parent=Msa0900980-mRNA-1 |
| chr6_1 | exon | 97223104 | 97223274 | 97223104 | ID=Msa0900980-mRNA-1:exon:17000;Parent=Msa0900980-mRNA-1 |
| chr6_1 | exon | 97223375 | 97223965 | 97223375 | ID=Msa0900980-mRNA-1:exon:17001;Parent=Msa0900980-mRNA-1 |
| chr6_1 | exon | 97224163 | 97224292 | 97224163 | ID=Msa0900980-mRNA-1:exon:17002;Parent=Msa0900980-mRNA-1 |
| chr6_1 | exon | 97224383 | 97225331 | 97224383 | ID=Msa0900980-mRNA-1:exon:17003;Parent=Msa0900980-mRNA-1 |
| chr6_1 | CDS | 97221417 | 97221499 | 97221417 | ID=Msa0900980-mRNA-1:cds;Parent=Msa0900980-mRNA-1 |
| chr6_1 | CDS | 97221581 | 97221686 | 97221581 | ID=Msa0900980-mRNA-1:cds;Parent=Msa0900980-mRNA-1 |
| chr6_1 | CDS | 97221771 | 97221889 | 97221771 | ID=Msa0900980-mRNA-1:cds;Parent=Msa0900980-mRNA-1 |
| chr6_1 | CDS | 97222819 | 97223021 | 97222819 | ID=Msa0900980-mRNA-1:cds;Parent=Msa0900980-mRNA-1 |
| chr6_1 | CDS | 97223104 | 97223274 | 97223104 | ID=Msa0900980-mRNA-1:cds;Parent=Msa0900980-mRNA-1 |
| chr6_1 | CDS | 97223375 | 97223965 | 97223375 | ID=Msa0900980-mRNA-1:cds;Parent=Msa0900980-mRNA-1 |
| chr6_1 | CDS | 97224163 | 97224292 | 97224163 | ID=Msa0900980-mRNA-1:cds;Parent=Msa0900980-mRNA-1 |
| chr6_1 | CDS | 97224383 | 97225331 | 97224383 | ID=Msa0900980-mRNA-1:cds;Parent=Msa0900980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
