AlfalfaGEDB | Msa0193530

M. sativa cultivar zhongmu-4 / Msa0193530

KEGG: -
GO: GO:0000122 GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0193530	XP_003593644.1	98.069	932	17	1	1	932	33	963	0.0	1886

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0193530	sp\|F4HY56\|RLT1_ARATH	57.371	875	310	10	2	855	33	865	0.0	855

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0193530	G7ISG2	98.069	932	17	1	1	932	33	963	0.0	1886

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TFs/TRs:

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Gene ID	Type	Classification
Msa0193530	TF	HB-other

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0188850	Msa0193530	0.836960	6.889945e-57	-8.615850e-47
Msa0193530	Msa0222160	0.841377	4.929767e-58	-8.615850e-47
Msa0193530	Msa0263680	0.815804	7.662233e-52	-8.615850e-47
Msa0193530	Msa0301590	0.823772	1.156668e-53	-8.615850e-47
Msa0193530	Msa0338960	0.845041	5.198680e-59	-8.615850e-47
Msa0193530	Msa0427030	0.819583	1.076346e-52	-8.615850e-47
Msa0193530	Msa0554680	0.821605	3.693447e-53	-8.615850e-47
Msa0193530	Msa0741200	0.825337	4.952063e-54	-8.615850e-47
Msa0193530	Msa0801950	0.830572	2.723886e-55	-8.615850e-47
Msa0193530	Msa1235970	0.811534	6.673983e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0193530	MtrunA17_Chr2g0282771	98.069	932	17	1	1	932	33	963	0.0	1885
Msa0193530	MtrunA17_Chr4g0046591	68.483	936	230	16	3	932	26	902	0.0	1090
Msa0193530	MtrunA17_Chr4g0040511	52.941	867	350	14	5	844	16	851	0.0	791
Msa0193530	MtrunA17_Chr8g0389091	32.948	346	190	6	455	799	277	581	1.94e-41	165
Msa0193530	MtrunA17_Chr2g0284051	81.818	66	11	1	922	987	7	71	4.05e-25	101
Msa0193530	MtrunA17_Chr5g0441991	51.724	58	28	0	10	67	20	77	3.41e-12	70.5
Msa0193530	MtrunA17_Chr3g0094681	50.909	55	27	0	11	65	21	75	2.04e-11	67.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0193530	AT1G28420.1	57.371	875	310	10	2	855	33	865	0.0	855
Msa0193530	AT5G44180.2	52.737	895	370	16	6	892	15	864	0.0	818
Msa0193530	AT5G44180.3	52.737	895	370	16	6	892	15	864	0.0	816
Msa0193530	AT5G44180.1	52.737	895	370	16	6	892	15	864	0.0	816
Msa0193530	AT4G12750.1	30.518	367	195	6	440	788	236	560	2.90e-34	142
Msa0193530	AT4G03250.1	47.368	57	30	0	11	67	22	78	4.24e-11	67.0

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Find 275 sgRNAs with CRISPR-Local

Find 456 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGAATAATTATGAA+AGG	0.573763	2_1:+9328535	Msa0193530:five_prime_UTR
AAAAGAATAATAATAATTAA+CGG	0.486539	2_1:-9328725	None:intergenic
AAAATCCAGATATTTGAAAA+TGG	0.211386	2_1:+9333401	Msa0193530:CDS
AAAGATTGAAGCGTGAGCAA+AGG	0.615457	2_1:+9331251	Msa0193530:CDS
AAAGGCGGGAGATAGAACGA+AGG	0.661832	2_1:+9331269	Msa0193530:CDS
AAAGGCTAGATCGTGAGAGA+AGG	0.577153	2_1:+9331185	Msa0193530:CDS
AAAGGGAGGAGGGGAAGTAT+AGG	0.295610	2_1:-9330614	None:intergenic
AAATCCAGATATTTGAAAAT+GGG	0.416183	2_1:+9333402	Msa0193530:CDS
AACAACAAGATTATGAGTTC+AGG	0.378782	2_1:+9329028	Msa0193530:exon
AACATATCAGATCTAATGCT+AGG	0.582335	2_1:-9330433	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATTCGATCTTGATCGA+TGG	+	chr2_1:9328926-9328945	Msa0193530:five_prime_UTR	30.0%
AACAACAAGATTATGAGTTC+AGG	+	chr2_1:9329028-9329047	Msa0193530:exon	30.0%
TCAAACTCAATTCCCAAAAT+AGG	-	chr2_1:9329610-9329629	None:intergenic	30.0%
TACATTCTATTTAGGGATCA+TGG	+	chr2_1:9329877-9329896	Msa0193530:intron	30.0%
TGACACATATGTGTGATAAA+TGG	+	chr2_1:9329937-9329956	Msa0193530:intron	30.0%
ACATGAAGTTAGAACGAATA+AGG	+	chr2_1:9330216-9330235	Msa0193530:CDS	30.0%
ACTGTGAATGAGAAAGAAAA+GGG	-	chr2_1:9330282-9330301	None:intergenic	30.0%
AACTGTGAATGAGAAAGAAA+AGG	-	chr2_1:9330283-9330302	None:intergenic	30.0%
AACATATCAGATCTAATGCT+AGG	-	chr2_1:9330436-9330455	None:intergenic	30.0%
AGCATTAGATCTGATATGTT+TGG	+	chr2_1:9330436-9330455	Msa0193530:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	9328405	9334938	9328405	ID=Msa0193530;Name=Msa0193530
chr2_1	mRNA	9328405	9334938	9328405	ID=Msa0193530-mRNA-1;Parent=Msa0193530;Name=Msa0193530-mRNA-1;_AED=0.13;_eAED=0.13;_QI=635\|0.35\|0.26\|0.86\|1\|1\|15\|0\|987
chr2_1	exon	9328405	9329124	9328405	ID=Msa0193530-mRNA-1:exon:4282;Parent=Msa0193530-mRNA-1
chr2_1	exon	9329236	9329664	9329236	ID=Msa0193530-mRNA-1:exon:4283;Parent=Msa0193530-mRNA-1
chr2_1	exon	9330158	9330237	9330158	ID=Msa0193530-mRNA-1:exon:4284;Parent=Msa0193530-mRNA-1
chr2_1	exon	9330388	9330852	9330388	ID=Msa0193530-mRNA-1:exon:4285;Parent=Msa0193530-mRNA-1
chr2_1	exon	9330968	9331057	9330968	ID=Msa0193530-mRNA-1:exon:4286;Parent=Msa0193530-mRNA-1
chr2_1	exon	9331157	9331321	9331157	ID=Msa0193530-mRNA-1:exon:4287;Parent=Msa0193530-mRNA-1
chr2_1	exon	9331422	9331644	9331422	ID=Msa0193530-mRNA-1:exon:4288;Parent=Msa0193530-mRNA-1
chr2_1	exon	9331744	9331844	9331744	ID=Msa0193530-mRNA-1:exon:4289;Parent=Msa0193530-mRNA-1
chr2_1	exon	9332130	9332216	9332130	ID=Msa0193530-mRNA-1:exon:4290;Parent=Msa0193530-mRNA-1
chr2_1	exon	9332324	9332476	9332324	ID=Msa0193530-mRNA-1:exon:4291;Parent=Msa0193530-mRNA-1
chr2_1	exon	9332576	9332731	9332576	ID=Msa0193530-mRNA-1:exon:4292;Parent=Msa0193530-mRNA-1
chr2_1	exon	9332943	9333152	9332943	ID=Msa0193530-mRNA-1:exon:4293;Parent=Msa0193530-mRNA-1
chr2_1	exon	9333227	9333768	9333227	ID=Msa0193530-mRNA-1:exon:4294;Parent=Msa0193530-mRNA-1
chr2_1	exon	9334293	9334416	9334293	ID=Msa0193530-mRNA-1:exon:4295;Parent=Msa0193530-mRNA-1
chr2_1	exon	9334885	9334938	9334885	ID=Msa0193530-mRNA-1:exon:4296;Parent=Msa0193530-mRNA-1
chr2_1	five_prime_UTR	9328405	9329039	9328405	ID=Msa0193530-mRNA-1:five_prime_utr;Parent=Msa0193530-mRNA-1
chr2_1	CDS	9329040	9329124	9329040	ID=Msa0193530-mRNA-1:cds;Parent=Msa0193530-mRNA-1
chr2_1	CDS	9329236	9329664	9329236	ID=Msa0193530-mRNA-1:cds;Parent=Msa0193530-mRNA-1
chr2_1	CDS	9330158	9330237	9330158	ID=Msa0193530-mRNA-1:cds;Parent=Msa0193530-mRNA-1
chr2_1	CDS	9330388	9330852	9330388	ID=Msa0193530-mRNA-1:cds;Parent=Msa0193530-mRNA-1
chr2_1	CDS	9330968	9331057	9330968	ID=Msa0193530-mRNA-1:cds;Parent=Msa0193530-mRNA-1
chr2_1	CDS	9331157	9331321	9331157	ID=Msa0193530-mRNA-1:cds;Parent=Msa0193530-mRNA-1
chr2_1	CDS	9331422	9331644	9331422	ID=Msa0193530-mRNA-1:cds;Parent=Msa0193530-mRNA-1
chr2_1	CDS	9331744	9331844	9331744	ID=Msa0193530-mRNA-1:cds;Parent=Msa0193530-mRNA-1
chr2_1	CDS	9332130	9332216	9332130	ID=Msa0193530-mRNA-1:cds;Parent=Msa0193530-mRNA-1
chr2_1	CDS	9332324	9332476	9332324	ID=Msa0193530-mRNA-1:cds;Parent=Msa0193530-mRNA-1
chr2_1	CDS	9332576	9332731	9332576	ID=Msa0193530-mRNA-1:cds;Parent=Msa0193530-mRNA-1
chr2_1	CDS	9332943	9333152	9332943	ID=Msa0193530-mRNA-1:cds;Parent=Msa0193530-mRNA-1
chr2_1	CDS	9333227	9333768	9333227	ID=Msa0193530-mRNA-1:cds;Parent=Msa0193530-mRNA-1
chr2_1	CDS	9334293	9334416	9334293	ID=Msa0193530-mRNA-1:cds;Parent=Msa0193530-mRNA-1
chr2_1	CDS	9334885	9334938	9334885	ID=Msa0193530-mRNA-1:cds;Parent=Msa0193530-mRNA-1

Gene Sequence

>Msa0193530

ATGAGTTCAGGTGAAGGTCAAAGCAAACCTAAGAGACAGATGAAAACCCCTTTTCAACTTGAAATGCTTGAGAAAGCTTATGCTTTGGAGACATATCCTTCGGAGACAACAAGGATAGAGCTGTCTGAGAAGTTGGGGTTGTCGGATCGACAGTTACAGATGTGGTTTTGTCACCGGAGGTTGAAAGACAAGAAGGAGTTACCGGTTAAGAAGGTGCGAAAGGCGCCACCTTTGCTGGATTCTCCTACTCATGAGCCTAATCCTAAGTTGATTCTGGAGCCTTGTAATGAATATGGATCCGGGTCAGGTTCTGGGTCTAGCCCGTTTGCCCGGATGGAGTTGAGGAATGTGGTGCCTCCTCCAAGGAGTTATTATGAGTCACCACAGACTATAATGGAGCTTAGAGCAATTGCTTGTGTGGAGGCACAGTTAGGGGAGCCTTTGAGGGAAGATGGACCTATTTTGGGAATTGAGTTTGATCCATTGCCACCTGATGCATTTGGGGCACCCTTAGCTGTTGCAGAACAGCAGAAGCGGCCTAGTCTTGCCTACGACAGTAAAATATACGAAAGACATGAAGTTAGAACGAATAAGGCAATGGCAAGGACATTCCCTGAATATCCGTTTGTTCCGAACCAGCCTAGCATTAGATCTGATATGTTTGGACAATTGAGTCAACCCCATTTATACGATCCAATGGAGGGTCCTGCCAGAACTCCTCCTTTTCCGATTGGAAATGAACATCTACCTAGAATTCATGGAACTCAAAGCCATTCTTCCCGTGCTCGCCTATCGTCTCAACAGGACAAGCCTGTGACTCCCTATACTTCCCCTCCTCCCTTTTTGTCTCAGCAGGACAAGCAATCAATTCCCTATCCATCTCCTCCTCGAGATAATGATGTTGTCCCCAAAAGGGAACCTCACCCAAACGTAGCCAATACTGGCATTAACTCCCAATTCACTGATCACCAAATTGGTGGACAAGAAAATCCTTTAGCTTTACCTGGTGGACAAGTTTTCCATAATGACACGGTCTTGCGGGTGGAGAAGAAACGAAAGACTGACGATGCCAGAGTTGCCAAGGAAGTTGAAGCCTATGAAATAAGGATGAAGAAAGAACTTGAGAAACAAGATATCTTAAGAAGAAAGAATGAAGAGCGAATGAGGAAAGAAATGGAAAGGCTAGATCGTGAGAGAAGGAAGGAAGAAGAAAGGATGATGCGTGAGAGGCAGAGAGAAGAGGAAAGATTGAAGCGTGAGCAAAGGCGGGAGATAGAACGAAGGGAAAAATATATGATGAAAGAACATTTAAGAGCTGAGAAAAGGAAGCAAAAAGAAGAGATTCGCAAAGAGAAAGAGGCAGAGAGAAGGAAAGCTGCCCTTGAAAAGGCAAATGCTCGTAGAATAGCTAAAGAGTCTACGGAGCTCATTGAGGATGAACAGTTAGAATTGATGGAGTTGGCTGCAGCAAGCAAGGGGCTTTCCTCTATCATCCATATTGATCTTGATACTTTGCAAAACCTTGAATCATTTAGGGATTCCTTGTGTGTTTTCCCGCCCAAAAGTGTAAAGCTAAAAAAACCATTTGCTATCCAGCCCTGGATCAACTCAGAACAAGATGTTGGCAATCTTCTCATGGTTTGGAGATTCTTGATTACCTTTGCTGATGCTCTTGAGTTATGGCCTTTTACTCTTGATGAATTTGTACAAGCATTTCATGATTATGATTCAAGATTGTTGGGTGAGATACATGTTGCTGTTCTTAAAATGATAATAAAAGACATTGAAGATGTTGCAAGGACACCTTCTACAGGATTAGGAGTGAACCAGAATGGAGCTGCTAATCCTGCCGGTGGCCATCCAGAGATTGTGGAAGGAGCATATACATGGGGCTTTGACATACGAAATTGGCAGAAGAACTTAAATCAATTGACATGGCCTGAAATTTTGCGACAGTTAGCACTATCTGCAGGATTTGGACCACAGTTGAAAAAAAGAAGTATTACCTGGTCCTGTGCAAATGATAAAGAAGAGGGAAGAAGTGGTGATGATGTCATTTCTACACTTCGTAATGGTTCAGCAGCCGTAAGTGCAGTGGCAAAAATGCGAGAGAAAGGTTTATTAGCTCCTCGAAGATCGAGACATAGGTTAACTCCAGGAACAGTTAAATTTGCAGCATTTCACGTTCTCTCTCTTGAGGGCCCCAAAGGTTTGAATGTACTAGAGCTTGCAGAGAAGATTCAGAAATCTGGTCTTCGGGACCTGACAACCAGCAAGACACCTGAAGCATCAATTTCTGTTGCTTTGACAAGAGATGGCAAACTTTTCGAAAGAATAGCTCCATCAACATATCGTGTACGAACTGCATTTAGACAGGATCCTGCAGATGCCGAGTCCATTCTTTCAGAAGCAAGAAAGAAAATCCAGATATTTGAAAATGGGTTTCTAGCTGGTGAAGATGCCGTTGATGTTGAAAGAGAAGAAGAGTCGGAAAGCGATGAAGTTGATGAGGATCCTGAAGACGATGATTTAGTAAATCCTTCAAGTGGAAACCAAAATTCAGTACAATACGATAATATGGATATTAGTTTGGTAAATGTAAAAGAAAATTTGGGCAATGATGTAGACGTTATTCAAAATAAGCTTGATGATACTGATCTGCCTTGTTTTCCTGAGAATGGTTCCAAGGATGCCGATTGTCCCACTTCTGTCATCAAACAACCAGTTGCGTGTGAAAATCTAAATACCGGAAATCTTGATGATAATATGGAAATCGATGAAAGCAAAGAAGTTGAAGATTTGAAGTTGTTGTTTGAGATGTTGAGGAATTTAAGGTTGTTTAGAGAAGGAAAATCAGACGGAAAACTACCATTCAAAGAGTTGTTTGAAAGGTTTAAGAAAGAGAGTGAATTGAAGAAGCCTCTTGTTTGGAATAAGGAAGTGTTGAATCCTGTGACAGATTGA

Protein sequence

>Msa0193530

MSSGEGQSKPKRQMKTPFQLEMLEKAYALETYPSETTRIELSEKLGLSDRQLQMWFCHRRLKDKKELPVKKVRKAPPLLDSPTHEPNPKLILEPCNEYGSGSGSGSSPFARMELRNVVPPPRSYYESPQTIMELRAIACVEAQLGEPLREDGPILGIEFDPLPPDAFGAPLAVAEQQKRPSLAYDSKIYERHEVRTNKAMARTFPEYPFVPNQPSIRSDMFGQLSQPHLYDPMEGPARTPPFPIGNEHLPRIHGTQSHSSRARLSSQQDKPVTPYTSPPPFLSQQDKQSIPYPSPPRDNDVVPKREPHPNVANTGINSQFTDHQIGGQENPLALPGGQVFHNDTVLRVEKKRKTDDARVAKEVEAYEIRMKKELEKQDILRRKNEERMRKEMERLDRERRKEEERMMRERQREEERLKREQRREIERREKYMMKEHLRAEKRKQKEEIRKEKEAERRKAALEKANARRIAKESTELIEDEQLELMELAAASKGLSSIIHIDLDTLQNLESFRDSLCVFPPKSVKLKKPFAIQPWINSEQDVGNLLMVWRFLITFADALELWPFTLDEFVQAFHDYDSRLLGEIHVAVLKMIIKDIEDVARTPSTGLGVNQNGAANPAGGHPEIVEGAYTWGFDIRNWQKNLNQLTWPEILRQLALSAGFGPQLKKRSITWSCANDKEEGRSGDDVISTLRNGSAAVSAVAKMREKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGPKGLNVLELAEKIQKSGLRDLTTSKTPEASISVALTRDGKLFERIAPSTYRVRTAFRQDPADAESILSEARKKIQIFENGFLAGEDAVDVEREEESESDEVDEDPEDDDLVNPSSGNQNSVQYDNMDISLVNVKENLGNDVDVIQNKLDDTDLPCFPENGSKDADCPTSVIKQPVACENLNTGNLDDNMEIDESKEVEDLKLLFEMLRNLRLFREGKSDGKLPFKELFERFKKESELKKPLVWNKEVLNPVTD*