AlfalfaGEDB | Msa0193970

M. sativa cultivar zhongmu-4 / Msa0193970

KEGG: -
GO: GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009966 GO:0010033 GO:0010037 GO:0010469 GO:0010646 GO:0015698 GO:0015706 GO:0023051 GO:0030545 GO:0042221 GO:0042493 GO:0048018 GO:0048046 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0065007 GO:0065009 GO:0071705 GO:0072347 GO:0098772 GO:1901700 GO:1902025 GO:2000026 GO:2000280
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0193970	XP_013462611.1	93.137	102	7	0	1	102	1	102	8.19e-62	193

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0193970	sp\|Q52K95\|PCP14_ARATH	36.634	101	52	2	9	102	12	107	7.72e-11	57.4

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0193970	I3S8D3	93.137	102	7	0	1	102	1	102	3.91e-62	193

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0147790	Msa0193970	0.802329	5.907341e-49	-8.615850e-47
Msa0193970	Msa0235840	0.861085	1.313829e-63	-8.615850e-47
Msa0193970	Msa0459640	0.800350	1.502029e-48	-8.615850e-47
Msa0193970	Msa0488580	0.804455	2.142802e-49	-8.615850e-47
Msa0193970	Msa0816630	0.816378	5.705108e-52	-8.615850e-47
Msa0193970	Msa0863940	0.816742	4.727084e-52	-8.615850e-47
Msa0193970	Msa1221220	0.823582	1.281994e-53	-8.615850e-47
Msa0193970	Msa1401110	0.827802	1.279465e-54	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0193970	MtrunA17_Chr2g0284361	93.137	102	7	0	1	102	1	102	7.54e-66	193
Msa0193970	MtrunA17_Chr8g0379531	57.732	97	34	2	9	102	8	100	5.91e-33	110

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0193970	AT1G29290.1	36.634	101	52	2	9	102	12	107	7.84e-12	57.4

Find 21 sgRNAs with CRISPR-Local

Find 21 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTCTTGCTTGGTGCAGAATA+TGG	0.235499	2_1:-9810171	None:intergenic
GAATATGGAACTTTGCCTTT+AGG	0.334242	2_1:-9810156	None:intergenic
TCCCTTTGTTCATGTCTAGA+AGG	0.367085	2_1:+9810051	Msa0193970:CDS
GAAGGAAGAAAGCTTCATAT+TGG	0.368317	2_1:+9810069	Msa0193970:CDS
AACAAATTGTCCCTTGAAGA+TGG	0.411417	2_1:-9810120	None:intergenic
CTTCGATCTGTTCCTAGTCC+TGG	0.413490	2_1:+9810273	Msa0193970:CDS
CAGCAGGTTCGGTGCTTATG+AGG	0.439064	2_1:-9810236	None:intergenic
AATCCGTACTTCAGCAGGTT+CGG	0.461110	2_1:-9810247	None:intergenic
ACAGAGTTACCTCTCTTGCT+TGG	0.463840	2_1:-9810183	None:intergenic
TTCTTGACTTCACTTCCTAA+AGG	0.476696	2_1:+9810141	Msa0193970:CDS
AGAAGAATCCGTACTTCAGC+AGG	0.481211	2_1:-9810252	None:intergenic
TCCTTCTAGACATGAACAAA+GGG	0.484605	2_1:-9810052	None:intergenic
AGAAAATTGACCCATCTTCA+AGG	0.491293	2_1:+9810109	Msa0193970:CDS
TCTGTTCCTAGTCCTGGTGC+TGG	0.534087	2_1:+9810279	Msa0193970:CDS
TTCCTTCTAGACATGAACAA+AGG	0.543888	2_1:-9810053	None:intergenic
ATCATTCAATGTCCAGCACC+AGG	0.555598	2_1:-9810291	None:intergenic
CAATGTCCAGCACCAGGACT+AGG	0.555682	2_1:-9810285	None:intergenic
ACAAATTGTCCCTTGAAGAT+GGG	0.568936	2_1:-9810119	None:intergenic
GCACCGAACCTGCTGAAGTA+CGG	0.569118	2_1:+9810244	Msa0193970:CDS
GAAAATTGACCCATCTTCAA+GGG	0.591769	2_1:+9810110	Msa0193970:CDS
TATTCTGCACCAAGCAAGAG+AGG	0.618318	2_1:+9810174	Msa0193970:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	TCCTTCTAGACATGAACAAA+GGG	-	chr2_1:9810055-9810074	None:intergenic	35.0%
	TTCCTTCTAGACATGAACAA+AGG	-	chr2_1:9810056-9810075	None:intergenic	35.0%
	GAAGGAAGAAAGCTTCATAT+TGG	+	chr2_1:9810069-9810088	Msa0193970:CDS	35.0%
!	TGAAGATGGGTCAATTTTCT+TGG	-	chr2_1:9810109-9810128	None:intergenic	35.0%
	AGAAAATTGACCCATCTTCA+AGG	+	chr2_1:9810109-9810128	Msa0193970:CDS	35.0%
	GAAAATTGACCCATCTTCAA+GGG	+	chr2_1:9810110-9810129	Msa0193970:CDS	35.0%
	ACAAATTGTCCCTTGAAGAT+GGG	-	chr2_1:9810122-9810141	None:intergenic	35.0%
	AACAAATTGTCCCTTGAAGA+TGG	-	chr2_1:9810123-9810142	None:intergenic	35.0%
	TTCTTGACTTCACTTCCTAA+AGG	+	chr2_1:9810141-9810160	Msa0193970:CDS	35.0%
	GAATATGGAACTTTGCCTTT+AGG	-	chr2_1:9810159-9810178	None:intergenic	35.0%
	TCCCTTTGTTCATGTCTAGA+AGG	+	chr2_1:9810051-9810070	Msa0193970:CDS	40.0%
!!	CTCTTGCTTGGTGCAGAATA+TGG	-	chr2_1:9810174-9810193	None:intergenic	45.0%
	TATTCTGCACCAAGCAAGAG+AGG	+	chr2_1:9810174-9810193	Msa0193970:CDS	45.0%
	ACAGAGTTACCTCTCTTGCT+TGG	-	chr2_1:9810186-9810205	None:intergenic	45.0%
	AATCCGTACTTCAGCAGGTT+CGG	-	chr2_1:9810250-9810269	None:intergenic	45.0%
	AGAAGAATCCGTACTTCAGC+AGG	-	chr2_1:9810255-9810274	None:intergenic	45.0%
	CTTCGATCTGTTCCTAGTCC+TGG	+	chr2_1:9810273-9810292	Msa0193970:CDS	50.0%
!!	CAGCAGGTTCGGTGCTTATG+AGG	-	chr2_1:9810239-9810258	None:intergenic	55.0%
	GCACCGAACCTGCTGAAGTA+CGG	+	chr2_1:9810244-9810263	Msa0193970:CDS	55.0%
	TCTGTTCCTAGTCCTGGTGC+TGG	+	chr2_1:9810279-9810298	Msa0193970:CDS	55.0%
	CAATGTCCAGCACCAGGACT+AGG	-	chr2_1:9810288-9810307	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	9810000	9810308	9810000	ID=Msa0193970;Name=Msa0193970
chr2_1	mRNA	9810000	9810308	9810000	ID=Msa0193970-mRNA-1;Parent=Msa0193970;Name=Msa0193970-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|102
chr2_1	exon	9810000	9810308	9810000	ID=Msa0193970-mRNA-1:exon:4490;Parent=Msa0193970-mRNA-1
chr2_1	CDS	9810000	9810308	9810000	ID=Msa0193970-mRNA-1:cds;Parent=Msa0193970-mRNA-1

Gene Sequence	>Msa0193970 ATGGGTCGTATTAGAAATATGCAACTAGTTATATTCTTTATTCTCTTTGTTTCCCTTTGTTCATGTCTAGAAGGAAGAAAGCTTCATATTGGTTCAAGCAAAGAAACCAAGAAAATTGACCCATCTTCAAGGGACAATTTGTTCTTGACTTCACTTCCTAAAGGCAAAGTTCCATATTCTGCACCAAGCAAGAGAGGTAACTCTGTTGAAGTTGATGAGAAGCTTGTTGCACGTCACCTCATAAGCACCGAACCTGCTGAAGTACGGATTCTTCTTCGATCTGTTCCTAGTCCTGGTGCTGGACATTGA
Protein sequence	>Msa0193970 MGRIRNMQLVIFFILFVSLCSCLEGRKLHIGSSKETKKIDPSSRDNLFLTSLPKGKVPYSAPSKRGNSVEVDEKLVARHLISTEPAEVRILLRSVPSPGAGH*