Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0459640 | XP_013460469.1 | 93.750 | 224 | 14 | 0 | 1 | 224 | 1 | 224 | 7.05e-154 | 436 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0459640 | sp|P25317|GSTXA_TOBAC | 67.580 | 219 | 71 | 0 | 5 | 223 | 1 | 219 | 1.47e-110 | 319 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0459640 | I3SI44 | 93.750 | 224 | 14 | 0 | 1 | 224 | 1 | 224 | 3.37e-154 | 436 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0052780 | Msa0459640 | 0.804749 | 1.860288e-49 | -8.615850e-47 |
| Msa0087550 | Msa0459640 | 0.849165 | 3.852872e-60 | -8.615850e-47 |
| Msa0097570 | Msa0459640 | 0.803677 | 3.109833e-49 | -8.615850e-47 |
| Msa0129640 | Msa0459640 | 0.827835 | 1.256127e-54 | -8.615850e-47 |
| Msa0134270 | Msa0459640 | 0.831999 | 1.213703e-55 | -8.615850e-47 |
| Msa0147790 | Msa0459640 | 0.801379 | 9.259073e-49 | -8.615850e-47 |
| Msa0180820 | Msa0459640 | 0.803157 | 3.985443e-49 | -8.615850e-47 |
| Msa0193970 | Msa0459640 | 0.800350 | 1.502029e-48 | -8.615850e-47 |
| Msa0235840 | Msa0459640 | 0.823059 | 1.697756e-53 | -8.615850e-47 |
| Msa0393100 | Msa0459640 | 0.818300 | 2.106637e-52 | -8.615850e-47 |
| Msa0397790 | Msa0459640 | 0.802552 | 5.315551e-49 | -8.615850e-47 |
| Msa0402800 | Msa0459640 | 0.801538 | 8.588286e-49 | -8.615850e-47 |
| Msa0459640 | Msa0486980 | 0.812843 | 3.457474e-51 | -8.615850e-47 |
| Msa0459640 | Msa0488580 | 0.814892 | 1.222054e-51 | -8.615850e-47 |
| Msa0459640 | Msa0497860 | 0.807189 | 5.708507e-50 | -8.615850e-47 |
| Msa0459640 | Msa0565180 | 0.802814 | 4.692911e-49 | -8.615850e-47 |
| Msa0459640 | Msa0614290 | 0.804286 | 2.323188e-49 | -8.615850e-47 |
| Msa0459640 | Msa0657340 | 0.809095 | 2.240841e-50 | -8.615850e-47 |
| Msa0459640 | Msa0816630 | 0.824605 | 7.374951e-54 | -8.615850e-47 |
| Msa0459640 | Msa0863940 | 0.815734 | 7.943532e-52 | -8.615850e-47 |
| Msa0459640 | Msa0876790 | 0.801539 | 8.583215e-49 | -8.615850e-47 |
| Msa0459640 | Msa1111860 | 0.804684 | 1.919818e-49 | -8.615850e-47 |
| Msa0459640 | Msa1173150 | 0.803028 | 4.238022e-49 | -8.615850e-47 |
| Msa0459640 | Msa1217260 | 0.840307 | 9.408853e-58 | -8.615850e-47 |
| Msa0459640 | Msa1302340 | 0.827477 | 1.531486e-54 | -8.615850e-47 |
| Msa0459640 | Msa1349830 | 0.801653 | 8.134701e-49 | -8.615850e-47 |
| Msa0459640 | Msa1401110 | 0.817738 | 2.822568e-52 | -8.615850e-47 |
| Msa0459640 | Msa1412410 | 0.827861 | 1.238293e-54 | -8.615850e-47 |
| Msa0459640 | Msa1427860 | 0.831950 | 1.248281e-55 | -8.615850e-47 |
| Msa0459640 | Msa1435320 | 0.800491 | 1.405688e-48 | -8.615850e-47 |
| Msa0459640 | Msa1465860 | 0.812841 | 3.460557e-51 | -8.615850e-47 |
| Msa0306310 | Msa0459640 | 0.800272 | 1.557972e-48 | -8.615850e-47 |
| Msa0332360 | Msa0459640 | 0.841652 | 4.172132e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0459640 | MtrunA17_Chr3g0107741 | 93.750 | 224 | 14 | 0 | 1 | 224 | 1 | 224 | 6.48e-158 | 436 |
| Msa0459640 | MtrunA17_Chr3g0107731 | 86.607 | 224 | 30 | 0 | 1 | 224 | 1 | 224 | 8.82e-145 | 402 |
| Msa0459640 | MtrunA17_Chr2g0312771 | 63.134 | 217 | 80 | 0 | 8 | 224 | 3 | 219 | 1.34e-102 | 296 |
| Msa0459640 | MtrunA17_Chr2g0312751 | 60.369 | 217 | 86 | 0 | 8 | 224 | 3 | 219 | 1.57e-99 | 288 |
| Msa0459640 | MtrunA17_Chr2g0312781 | 60.849 | 212 | 83 | 0 | 8 | 219 | 20 | 231 | 3.50e-96 | 280 |
| Msa0459640 | MtrunA17_Chr2g0312731 | 60.369 | 217 | 86 | 0 | 8 | 224 | 3 | 219 | 6.36e-96 | 279 |
| Msa0459640 | MtrunA17_Chr2g0312811 | 60.274 | 219 | 85 | 1 | 8 | 224 | 3 | 221 | 8.89e-93 | 271 |
| Msa0459640 | MtrunA17_Chr2g0312681 | 57.143 | 217 | 93 | 0 | 8 | 224 | 3 | 219 | 2.46e-92 | 270 |
| Msa0459640 | MtrunA17_Chr2g0312691 | 59.447 | 217 | 88 | 0 | 8 | 224 | 3 | 219 | 5.39e-90 | 264 |
| Msa0459640 | MtrunA17_Chr2g0312791 | 59.361 | 219 | 87 | 2 | 8 | 224 | 3 | 221 | 7.81e-88 | 258 |
| Msa0459640 | MtrunA17_Chr8g0357211 | 54.839 | 217 | 98 | 0 | 8 | 224 | 3 | 219 | 2.18e-87 | 257 |
| Msa0459640 | MtrunA17_Chr2g0312711 | 57.604 | 217 | 91 | 1 | 8 | 224 | 3 | 218 | 2.99e-87 | 257 |
| Msa0459640 | MtrunA17_Chr8g0357241 | 54.378 | 217 | 99 | 0 | 8 | 224 | 3 | 219 | 6.02e-87 | 256 |
| Msa0459640 | MtrunA17_Chr2g0312721 | 56.075 | 214 | 94 | 0 | 8 | 221 | 3 | 216 | 2.31e-86 | 254 |
| Msa0459640 | MtrunA17_Chr4g0069471 | 58.242 | 182 | 73 | 2 | 7 | 187 | 23 | 202 | 1.29e-73 | 222 |
| Msa0459640 | MtrunA17_Chr5g0433801 | 49.541 | 218 | 108 | 2 | 8 | 224 | 5 | 221 | 2.14e-73 | 222 |
| Msa0459640 | MtrunA17_Chr5g0415411 | 41.364 | 220 | 120 | 4 | 5 | 215 | 1 | 220 | 2.11e-46 | 153 |
| Msa0459640 | MtrunA17_Chr7g0240681 | 41.509 | 212 | 118 | 5 | 6 | 213 | 4 | 213 | 1.15e-45 | 151 |
| Msa0459640 | MtrunA17_Chr7g0240541 | 41.872 | 203 | 113 | 5 | 6 | 205 | 4 | 204 | 9.81e-45 | 149 |
| Msa0459640 | MtrunA17_Chr8g0363751 | 38.627 | 233 | 126 | 5 | 5 | 223 | 1 | 230 | 1.24e-44 | 149 |
| Msa0459640 | MtrunA17_Chr7g0240631 | 38.863 | 211 | 124 | 5 | 6 | 213 | 4 | 212 | 1.05e-43 | 146 |
| Msa0459640 | MtrunA17_Chr7g0240641 | 38.863 | 211 | 124 | 4 | 6 | 213 | 4 | 212 | 1.25e-43 | 146 |
| Msa0459640 | MtrunA17_Chr4g0008781 | 39.535 | 215 | 117 | 7 | 6 | 213 | 5 | 213 | 4.49e-42 | 142 |
| Msa0459640 | MtrunA17_Chr7g0240531 | 40.183 | 219 | 126 | 5 | 6 | 221 | 4 | 220 | 5.24e-42 | 142 |
| Msa0459640 | MtrunA17_Chr8g0379581 | 39.901 | 203 | 119 | 2 | 5 | 205 | 1 | 202 | 1.07e-41 | 141 |
| Msa0459640 | MtrunA17_Chr7g0240551 | 38.813 | 219 | 129 | 5 | 6 | 221 | 4 | 220 | 1.46e-41 | 140 |
| Msa0459640 | MtrunA17_Chr3g0132581 | 45.562 | 169 | 91 | 1 | 5 | 173 | 1 | 168 | 1.65e-41 | 140 |
| Msa0459640 | MtrunA17_Chr7g0240561 | 37.900 | 219 | 117 | 6 | 5 | 213 | 3 | 212 | 4.02e-41 | 139 |
| Msa0459640 | MtrunA17_Chr1g0196661 | 39.423 | 208 | 121 | 3 | 10 | 213 | 4 | 210 | 6.85e-41 | 139 |
| Msa0459640 | MtrunA17_Chr7g0240691 | 39.524 | 210 | 121 | 4 | 8 | 213 | 36 | 243 | 1.07e-40 | 139 |
| Msa0459640 | MtrunA17_Chr5g0417011 | 37.500 | 208 | 118 | 4 | 10 | 208 | 8 | 212 | 3.03e-40 | 137 |
| Msa0459640 | MtrunA17_Chr4g0008791 | 37.850 | 214 | 126 | 5 | 5 | 213 | 1 | 212 | 7.73e-40 | 136 |
| Msa0459640 | MtrunA17_Chr7g0240511 | 39.524 | 210 | 119 | 5 | 6 | 213 | 4 | 207 | 1.32e-39 | 135 |
| Msa0459640 | MtrunA17_Chr1g0196771 | 40.376 | 213 | 108 | 8 | 8 | 210 | 2 | 205 | 1.58e-39 | 135 |
| Msa0459640 | MtrunA17_Chr1g0196721 | 39.524 | 210 | 122 | 3 | 9 | 214 | 2 | 210 | 3.92e-39 | 134 |
| Msa0459640 | MtrunA17_Chr4g0029341 | 38.710 | 217 | 128 | 3 | 8 | 220 | 3 | 218 | 1.63e-38 | 132 |
| Msa0459640 | MtrunA17_Chr8g0379561 | 39.901 | 203 | 119 | 2 | 5 | 205 | 2 | 203 | 5.89e-38 | 131 |
| Msa0459640 | MtrunA17_Chr7g0240611 | 36.493 | 211 | 125 | 5 | 6 | 213 | 4 | 208 | 7.47e-38 | 131 |
| Msa0459640 | MtrunA17_Chr7g0240581 | 37.931 | 203 | 121 | 4 | 6 | 205 | 4 | 204 | 1.81e-37 | 130 |
| Msa0459640 | MtrunA17_Chr1g0196711 | 38.942 | 208 | 122 | 4 | 10 | 213 | 4 | 210 | 7.04e-37 | 129 |
| Msa0459640 | MtrunA17_Chr7g0240521 | 41.379 | 203 | 114 | 5 | 6 | 205 | 11 | 211 | 8.35e-37 | 129 |
| Msa0459640 | MtrunA17_Chr6g0483141 | 37.745 | 204 | 113 | 6 | 23 | 217 | 17 | 215 | 1.26e-36 | 128 |
| Msa0459640 | MtrunA17_Chr7g0240671 | 37.073 | 205 | 124 | 4 | 10 | 213 | 5 | 205 | 1.33e-36 | 128 |
| Msa0459640 | MtrunA17_Chr1g0196691 | 39.086 | 197 | 110 | 5 | 16 | 205 | 35 | 228 | 2.28e-36 | 128 |
| Msa0459640 | MtrunA17_Chr1g0212301 | 39.303 | 201 | 116 | 5 | 10 | 205 | 4 | 203 | 4.68e-35 | 124 |
| Msa0459640 | MtrunA17_Chr8g0391631 | 42.593 | 162 | 80 | 3 | 5 | 156 | 17 | 175 | 8.22e-35 | 122 |
| Msa0459640 | MtrunA17_Chr7g0240661 | 38.462 | 208 | 123 | 5 | 7 | 213 | 5 | 208 | 4.62e-34 | 121 |
| Msa0459640 | MtrunA17_Chr7g0240651 | 36.842 | 209 | 123 | 5 | 8 | 213 | 6 | 208 | 1.78e-33 | 120 |
| Msa0459640 | MtrunA17_Chr2g0313561 | 61.765 | 68 | 26 | 0 | 52 | 119 | 1 | 68 | 1.45e-25 | 95.1 |
| Msa0459640 | MtrunA17_Chr7g0263221 | 29.231 | 195 | 127 | 6 | 20 | 210 | 37 | 224 | 8.38e-15 | 70.9 |
| Msa0459640 | MtrunA17_Chr5g0415421 | 46.575 | 73 | 37 | 1 | 33 | 103 | 11 | 83 | 4.77e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0459640 | AT1G17180.1 | 63.134 | 217 | 80 | 0 | 8 | 224 | 3 | 219 | 1.77e-99 | 288 |
| Msa0459640 | AT1G78380.1 | 61.502 | 213 | 82 | 0 | 8 | 220 | 3 | 215 | 3.83e-99 | 287 |
| Msa0459640 | AT1G78370.1 | 60.190 | 211 | 84 | 0 | 11 | 221 | 6 | 216 | 1.01e-98 | 286 |
| Msa0459640 | AT1G17170.1 | 61.751 | 217 | 82 | 1 | 8 | 224 | 3 | 218 | 1.03e-93 | 273 |
| Msa0459640 | AT1G78360.1 | 58.796 | 216 | 88 | 1 | 10 | 224 | 5 | 220 | 1.38e-90 | 266 |
| Msa0459640 | AT1G78340.1 | 55.660 | 212 | 94 | 0 | 8 | 219 | 3 | 214 | 4.11e-88 | 259 |
| Msa0459640 | AT1G53680.1 | 56.221 | 217 | 93 | 2 | 10 | 224 | 8 | 224 | 2.33e-86 | 255 |
| Msa0459640 | AT1G78320.1 | 57.843 | 204 | 86 | 0 | 7 | 210 | 2 | 205 | 1.25e-82 | 246 |
| Msa0459640 | AT1G17190.1 | 51.835 | 218 | 105 | 0 | 5 | 222 | 1 | 218 | 4.08e-80 | 239 |
| Msa0459640 | AT3G43800.1 | 51.584 | 221 | 103 | 3 | 5 | 221 | 1 | 221 | 1.77e-75 | 228 |
| Msa0459640 | AT1G78320.2 | 50.000 | 204 | 75 | 1 | 7 | 210 | 2 | 178 | 5.41e-65 | 200 |
| Msa0459640 | AT1G10360.1 | 44.495 | 218 | 113 | 4 | 5 | 214 | 1 | 218 | 2.12e-51 | 166 |
| Msa0459640 | AT2G29420.1 | 39.614 | 207 | 122 | 3 | 1 | 205 | 1 | 206 | 1.23e-46 | 154 |
| Msa0459640 | AT1G10370.1 | 41.743 | 218 | 119 | 4 | 5 | 214 | 1 | 218 | 4.31e-46 | 153 |
| Msa0459640 | AT3G09270.1 | 40.291 | 206 | 117 | 5 | 5 | 205 | 1 | 205 | 2.11e-45 | 151 |
| Msa0459640 | AT1G59700.1 | 41.096 | 219 | 114 | 6 | 7 | 213 | 4 | 219 | 2.35e-44 | 149 |
| Msa0459640 | AT1G74590.1 | 36.889 | 225 | 126 | 5 | 7 | 220 | 5 | 224 | 5.04e-44 | 147 |
| Msa0459640 | AT5G62480.1 | 39.623 | 212 | 117 | 5 | 7 | 208 | 6 | 216 | 1.63e-42 | 144 |
| Msa0459640 | AT1G59670.1 | 36.771 | 223 | 132 | 5 | 7 | 220 | 4 | 226 | 2.17e-39 | 135 |
| Msa0459640 | AT2G29440.1 | 37.561 | 205 | 116 | 4 | 8 | 205 | 5 | 204 | 3.16e-39 | 135 |
| Msa0459640 | AT2G29490.1 | 38.647 | 207 | 113 | 5 | 7 | 205 | 5 | 205 | 9.73e-39 | 134 |
| Msa0459640 | AT1G27130.1 | 35.000 | 220 | 134 | 4 | 6 | 216 | 3 | 222 | 1.60e-38 | 133 |
| Msa0459640 | AT2G29480.1 | 39.130 | 207 | 112 | 6 | 7 | 205 | 5 | 205 | 2.01e-38 | 133 |
| Msa0459640 | AT1G69930.1 | 33.937 | 221 | 139 | 3 | 1 | 214 | 4 | 224 | 4.76e-38 | 132 |
| Msa0459640 | AT2G29450.1 | 37.156 | 218 | 125 | 5 | 7 | 217 | 4 | 216 | 1.35e-36 | 128 |
| Msa0459640 | AT1G27140.1 | 35.000 | 220 | 133 | 4 | 7 | 216 | 4 | 223 | 1.79e-36 | 128 |
| Msa0459640 | AT2G29470.1 | 35.784 | 204 | 124 | 5 | 7 | 205 | 5 | 206 | 6.09e-34 | 121 |
| Msa0459640 | AT2G29460.1 | 37.438 | 203 | 121 | 4 | 7 | 205 | 5 | 205 | 6.97e-34 | 121 |
| Msa0459640 | AT1G69920.1 | 30.667 | 225 | 143 | 5 | 1 | 214 | 26 | 248 | 6.50e-32 | 117 |
| Msa0459640 | AT5G62480.2 | 31.604 | 212 | 108 | 6 | 7 | 208 | 6 | 190 | 2.55e-23 | 93.6 |
| Msa0459640 | AT5G62480.3 | 31.604 | 212 | 107 | 6 | 7 | 208 | 6 | 189 | 2.86e-23 | 93.6 |
Find 46 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGATGATTTAGATCTTTA+TGG | 0.121621 | 3_3:-56291311 | None:intergenic |
| TTAGCTTGTGATCGTTTATA+AGG | 0.194284 | 3_3:-56291615 | None:intergenic |
| AATAATCCTTAATATTTAAA+TGG | 0.205590 | 3_3:+56292932 | Msa0459640:three_prime_UTR |
| CTCTAAAAGCAAAGAGCTTT+TGG | 0.241811 | 3_3:-56291466 | None:intergenic |
| AACGATCACAAGCTAAGTTT+TGG | 0.272037 | 3_3:+56291622 | Msa0459640:CDS |
| ATTTAGATCTTTATGGTGTT+TGG | 0.274975 | 3_3:-56291304 | None:intergenic |
| TTTCCATTATGAATCAAAAC+TGG | 0.283886 | 3_3:-56291513 | None:intergenic |
| TGACTTTGGGTATGTTGATT+TGG | 0.308826 | 3_3:+56292666 | Msa0459640:CDS |
| CTCTTATACCCTTCACTAGT+TGG | 0.309754 | 3_3:+56292689 | Msa0459640:CDS |
| CCTCACCCTCACAACATCTA+TGG | 0.327466 | 3_3:+56292820 | Msa0459640:CDS |
| AAGTCATCTCCATCAAAATA+TGG | 0.330764 | 3_3:-56292649 | None:intergenic |
| AATGAGTCAATACATGAATA+AGG | 0.357060 | 3_3:+56291335 | Msa0459640:exon |
| TATATTAAGTGATTCACATA+TGG | 0.358906 | 3_3:-56291538 | None:intergenic |
| GAAGGCTTGAAGACTTTAGA+AGG | 0.398109 | 3_3:+56292610 | Msa0459640:CDS |
| TTTACACTTACGAGATATAT+GGG | 0.406047 | 3_3:+56292713 | Msa0459640:CDS |
| GTGTCCTAAGCTTGTAGCTT+GGG | 0.417667 | 3_3:+56292756 | Msa0459640:CDS |
| TAGCTTGTGATCGTTTATAA+GGG | 0.421473 | 3_3:-56291614 | None:intergenic |
| TTGGCCCAAGCTACAAGCTT+AGG | 0.422848 | 3_3:-56292760 | None:intergenic |
| AAGACTTTAGAAGGTGAGCT+TGG | 0.438837 | 3_3:+56292619 | Msa0459640:CDS |
| ATATTAAGTGATTCACATAT+GGG | 0.451582 | 3_3:-56291537 | None:intergenic |
| AGCTTGTAGCTTGGGCCAAA+AGG | 0.454879 | 3_3:+56292764 | Msa0459640:CDS |
| AATGAGAGTGAAAATTGCTT+TGG | 0.455938 | 3_3:+56291398 | Msa0459640:CDS |
| TTGAGTACATTGATGAAGCT+TGG | 0.459310 | 3_3:+56291562 | Msa0459640:CDS |
| CCATAGATGTTGTGAGGGTG+AGG | 0.482451 | 3_3:-56292820 | None:intergenic |
| AAAATTGCTTTGGAAGAGAA+GGG | 0.495397 | 3_3:+56291408 | Msa0459640:CDS |
| AGCTTGGGCCAAAAGGTGTA+TGG | 0.501382 | 3_3:+56292771 | Msa0459640:CDS |
| GAAAATTGCTTTGGAAGAGA+AGG | 0.505025 | 3_3:+56291407 | Msa0459640:CDS |
| ACTCTCATTGCATATACGCT+TGG | 0.513803 | 3_3:-56291384 | None:intergenic |
| AGGAAAGGTTGAAGAACAAG+AGG | 0.520776 | 3_3:+56292567 | Msa0459640:CDS |
| ACAGCATTCGAAGGAAGCTA+TGG | 0.529203 | 3_3:+56292542 | Msa0459640:CDS |
| AGTGTCCTAAGCTTGTAGCT+TGG | 0.541196 | 3_3:+56292755 | Msa0459640:CDS |
| AGTGTAAAACCAACTAGTGA+AGG | 0.558553 | 3_3:-56292698 | None:intergenic |
| AAGGTTGAAGAACAAGAGGA+AGG | 0.559445 | 3_3:+56292571 | Msa0459640:CDS |
| TTCCATTATGAATCAAAACT+GGG | 0.561423 | 3_3:-56291512 | None:intergenic |
| GGGTCAGAGGGCAAAAGAGA+AGG | 0.589806 | 3_3:-56291594 | None:intergenic |
| GGATTGCATGGGAACTTGAG+AGG | 0.600229 | 3_3:+56292895 | Msa0459640:three_prime_UTR |
| TGATCGTTTATAAGGGTCAG+AGG | 0.602541 | 3_3:-56291607 | None:intergenic |
| GTGTAAAACCAACTAGTGAA+GGG | 0.625155 | 3_3:-56292697 | None:intergenic |
| ATTCGAAGGAAGCTATGGAA+AGG | 0.640495 | 3_3:+56292547 | Msa0459640:CDS |
| TGTAGGTATACAGCATTCGA+AGG | 0.646256 | 3_3:+56292533 | Msa0459640:intron |
| ATGCAATATAAACAGAAACA+TGG | 0.646292 | 3_3:+56292850 | Msa0459640:CDS |
| GATCGTTTATAAGGGTCAGA+GGG | 0.646537 | 3_3:-56291606 | None:intergenic |
| AAGGAAGCTATGGAAAGGAA+AGG | 0.650275 | 3_3:+56292552 | Msa0459640:CDS |
| CAAAACCATAGATGTTGTGA+GGG | 0.672125 | 3_3:-56292825 | None:intergenic |
| GCAAAACCATAGATGTTGTG+AGG | 0.685898 | 3_3:-56292826 | None:intergenic |
| ATACATGAATAAGGACAGTG+TGG | 0.750539 | 3_3:+56291344 | Msa0459640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTTTAATAATAAGTG+GGG | - | chr3_3:56292106-56292125 | None:intergenic | 10.0% |
| !!! | CAATAATTTTTAATAATAAG+TGG | - | chr3_3:56292108-56292127 | None:intergenic | 10.0% |
| !! | AATAATCCTTAATATTTAAA+TGG | + | chr3_3:56292932-56292951 | Msa0459640:three_prime_UTR | 10.0% |
| !!! | TATTTTCCATTTAAATATTA+AGG | - | chr3_3:56292941-56292960 | None:intergenic | 10.0% |
| !!! | ATAATTTTTAATAATAAGTG+GGG | - | chr3_3:56292106-56292125 | None:intergenic | 10.0% |
| !!! | CAATAATTTTTAATAATAAG+TGG | - | chr3_3:56292108-56292127 | None:intergenic | 10.0% |
| !! | AATAATCCTTAATATTTAAA+TGG | + | chr3_3:56292932-56292951 | Msa0459640:three_prime_UTR | 10.0% |
| !!! | TATTTTCCATTTAAATATTA+AGG | - | chr3_3:56292941-56292960 | None:intergenic | 10.0% |
| !! | AAATTGATTATGATTAAAAG+TGG | + | chr3_3:56291914-56291933 | Msa0459640:intron | 15.0% |
| !!! | TTCACTTTTATAAGAATAAA+GGG | - | chr3_3:56292137-56292156 | None:intergenic | 15.0% |
| !!! | ATTCACTTTTATAAGAATAA+AGG | - | chr3_3:56292138-56292157 | None:intergenic | 15.0% |
| !! | TGAATTACATAATAAATTCA+AGG | + | chr3_3:56292153-56292172 | Msa0459640:intron | 15.0% |
| !! | AAAAAAAAAGAGTTATTCAT+AGG | + | chr3_3:56292476-56292495 | Msa0459640:intron | 15.0% |
| !! | AAAAAAAAGAGTTATTCATA+GGG | + | chr3_3:56292477-56292496 | Msa0459640:intron | 15.0% |
| !! | AAATTGATTATGATTAAAAG+TGG | + | chr3_3:56291914-56291933 | Msa0459640:intron | 15.0% |
| !!! | TTCACTTTTATAAGAATAAA+GGG | - | chr3_3:56292137-56292156 | None:intergenic | 15.0% |
| !!! | ATTCACTTTTATAAGAATAA+AGG | - | chr3_3:56292138-56292157 | None:intergenic | 15.0% |
| !! | TGAATTACATAATAAATTCA+AGG | + | chr3_3:56292153-56292172 | Msa0459640:intron | 15.0% |
| !! | AAAAAAAAAGAGTTATTCAT+AGG | + | chr3_3:56292476-56292495 | Msa0459640:intron | 15.0% |
| !! | AAAAAAAAGAGTTATTCATA+GGG | + | chr3_3:56292477-56292496 | Msa0459640:intron | 15.0% |
| !! | TTAGATGATTTAGATCTTTA+TGG | - | chr3_3:56291314-56291333 | None:intergenic | 20.0% |
| !! | ATATTAAGTGATTCACATAT+GGG | - | chr3_3:56291540-56291559 | None:intergenic | 20.0% |
| !! | TATATTAAGTGATTCACATA+TGG | - | chr3_3:56291541-56291560 | None:intergenic | 20.0% |
| !!! | TGTATGTTTTTTTTTATCAC+TGG | + | chr3_3:56291708-56291727 | Msa0459640:intron | 20.0% |
| !!! | ATTTTCATTAAGTTTGTGTT+TGG | + | chr3_3:56291848-56291867 | Msa0459640:intron | 20.0% |
| !! | AAAACAAGGTTAAATATATG+TGG | - | chr3_3:56292080-56292099 | None:intergenic | 20.0% |
| !!! | CATATATTTAACCTTGTTTT+AGG | + | chr3_3:56292080-56292099 | Msa0459640:intron | 20.0% |
| !! | AAAACAAGGTTCAATATTTA+TGG | - | chr3_3:56292308-56292327 | None:intergenic | 20.0% |
| !! | ATGGATAATAATGTAAAAGT+GGG | - | chr3_3:56292363-56292382 | None:intergenic | 20.0% |
| !! | TATGGATAATAATGTAAAAG+TGG | - | chr3_3:56292364-56292383 | None:intergenic | 20.0% |
| !! | TTAGATGATTTAGATCTTTA+TGG | - | chr3_3:56291314-56291333 | None:intergenic | 20.0% |
| !! | ATATTAAGTGATTCACATAT+GGG | - | chr3_3:56291540-56291559 | None:intergenic | 20.0% |
| !! | TATATTAAGTGATTCACATA+TGG | - | chr3_3:56291541-56291560 | None:intergenic | 20.0% |
| !!! | TGTATGTTTTTTTTTATCAC+TGG | + | chr3_3:56291708-56291727 | Msa0459640:intron | 20.0% |
| !!! | ATTTTCATTAAGTTTGTGTT+TGG | + | chr3_3:56291848-56291867 | Msa0459640:intron | 20.0% |
| !! | AAAACAAGGTTAAATATATG+TGG | - | chr3_3:56292080-56292099 | None:intergenic | 20.0% |
| !!! | CATATATTTAACCTTGTTTT+AGG | + | chr3_3:56292080-56292099 | Msa0459640:intron | 20.0% |
| !! | AAAACAAGGTTCAATATTTA+TGG | - | chr3_3:56292308-56292327 | None:intergenic | 20.0% |
| !! | ATGGATAATAATGTAAAAGT+GGG | - | chr3_3:56292363-56292382 | None:intergenic | 20.0% |
| !! | TATGGATAATAATGTAAAAG+TGG | - | chr3_3:56292364-56292383 | None:intergenic | 20.0% |
| ! | ATTTAGATCTTTATGGTGTT+TGG | - | chr3_3:56291307-56291326 | None:intergenic | 25.0% |
| ! | AATGAGTCAATACATGAATA+AGG | + | chr3_3:56291335-56291354 | Msa0459640:exon | 25.0% |
| ! | TTCCATTATGAATCAAAACT+GGG | - | chr3_3:56291515-56291534 | None:intergenic | 25.0% |
| ! | TTTCCATTATGAATCAAAAC+TGG | - | chr3_3:56291516-56291535 | None:intergenic | 25.0% |
| ! | TGAATTCAGTAGTTTAGATT+TGG | - | chr3_3:56291746-56291765 | None:intergenic | 25.0% |
| !! | CTTTTATAAGAATAAAGGGA+TGG | - | chr3_3:56292133-56292152 | None:intergenic | 25.0% |
| !! | TGTTCGATTTTGAATTTAGA+GGG | - | chr3_3:56292265-56292284 | None:intergenic | 25.0% |
| !! | ATGTTCGATTTTGAATTTAG+AGG | - | chr3_3:56292266-56292285 | None:intergenic | 25.0% |
| ! | ATATACTAGTTGACAAAACA+AGG | - | chr3_3:56292322-56292341 | None:intergenic | 25.0% |
| !! | ATATAGCATAAAGTCAGTTT+TGG | + | chr3_3:56292423-56292442 | Msa0459640:intron | 25.0% |
| ! | GGTAAAAAGAAGTTTATAGA+AGG | + | chr3_3:56292592-56292611 | Msa0459640:CDS | 25.0% |
| !! | TTTTACACTTACGAGATATA+TGG | + | chr3_3:56292712-56292731 | Msa0459640:CDS | 25.0% |
| ! | TTTACACTTACGAGATATAT+GGG | + | chr3_3:56292713-56292732 | Msa0459640:CDS | 25.0% |
| ! | ATGCAATATAAACAGAAACA+TGG | + | chr3_3:56292850-56292869 | Msa0459640:CDS | 25.0% |
| ! | ATTTAGATCTTTATGGTGTT+TGG | - | chr3_3:56291307-56291326 | None:intergenic | 25.0% |
| ! | AATGAGTCAATACATGAATA+AGG | + | chr3_3:56291335-56291354 | Msa0459640:exon | 25.0% |
| ! | TTCCATTATGAATCAAAACT+GGG | - | chr3_3:56291515-56291534 | None:intergenic | 25.0% |
| ! | TTTCCATTATGAATCAAAAC+TGG | - | chr3_3:56291516-56291535 | None:intergenic | 25.0% |
| ! | TGAATTCAGTAGTTTAGATT+TGG | - | chr3_3:56291746-56291765 | None:intergenic | 25.0% |
| !! | CTTTTATAAGAATAAAGGGA+TGG | - | chr3_3:56292133-56292152 | None:intergenic | 25.0% |
| !! | TGTTCGATTTTGAATTTAGA+GGG | - | chr3_3:56292265-56292284 | None:intergenic | 25.0% |
| !! | ATGTTCGATTTTGAATTTAG+AGG | - | chr3_3:56292266-56292285 | None:intergenic | 25.0% |
| ! | ATATACTAGTTGACAAAACA+AGG | - | chr3_3:56292322-56292341 | None:intergenic | 25.0% |
| !! | ATATAGCATAAAGTCAGTTT+TGG | + | chr3_3:56292423-56292442 | Msa0459640:intron | 25.0% |
| ! | GGTAAAAAGAAGTTTATAGA+AGG | + | chr3_3:56292592-56292611 | Msa0459640:CDS | 25.0% |
| !! | TTTTACACTTACGAGATATA+TGG | + | chr3_3:56292712-56292731 | Msa0459640:CDS | 25.0% |
| ! | TTTACACTTACGAGATATAT+GGG | + | chr3_3:56292713-56292732 | Msa0459640:CDS | 25.0% |
| ! | ATGCAATATAAACAGAAACA+TGG | + | chr3_3:56292850-56292869 | Msa0459640:CDS | 25.0% |
| AATGAGAGTGAAAATTGCTT+TGG | + | chr3_3:56291398-56291417 | Msa0459640:CDS | 30.0% | |
| !! | AAAATTGCTTTGGAAGAGAA+GGG | + | chr3_3:56291408-56291427 | Msa0459640:CDS | 30.0% |
| !!! | ATCCCAGTTTTGATTCATAA+TGG | + | chr3_3:56291510-56291529 | Msa0459640:CDS | 30.0% |
| ! | TAGCTTGTGATCGTTTATAA+GGG | - | chr3_3:56291617-56291636 | None:intergenic | 30.0% |
| !! | TTAGCTTGTGATCGTTTATA+AGG | - | chr3_3:56291618-56291637 | None:intergenic | 30.0% |
| ATTCAGTAGTTTAGATTTGG+AGG | - | chr3_3:56291743-56291762 | None:intergenic | 30.0% | |
| TGAATATATTCTTCCAGTGT+CGG | + | chr3_3:56291961-56291980 | Msa0459640:intron | 30.0% | |
| TTTAGACCCAAAAAACTTCA+AGG | + | chr3_3:56292177-56292196 | Msa0459640:intron | 30.0% | |
| !!! | CTATAGCCTTGAAGTTTTTT+GGG | - | chr3_3:56292186-56292205 | None:intergenic | 30.0% |
| !!! | ACTATAGCCTTGAAGTTTTT+TGG | - | chr3_3:56292187-56292206 | None:intergenic | 30.0% |
| ! | GTTCGATTTTGAATTTAGAG+GGG | - | chr3_3:56292264-56292283 | None:intergenic | 30.0% |
| ! | GTATCATGGCTTAATTTTGT+TGG | + | chr3_3:56292499-56292518 | Msa0459640:intron | 30.0% |
| TGTTGGATTCTATTTGATGT+AGG | + | chr3_3:56292516-56292535 | Msa0459640:intron | 30.0% | |
| AAGTCATCTCCATCAAAATA+TGG | - | chr3_3:56292652-56292671 | None:intergenic | 30.0% | |
| !!! | TATTTTGATGGAGATGACTT+TGG | + | chr3_3:56292652-56292671 | Msa0459640:CDS | 30.0% |
| !! | ATTTTGATGGAGATGACTTT+GGG | + | chr3_3:56292653-56292672 | Msa0459640:CDS | 30.0% |
| ! | CTTGAATAGAGATTTTCTTG+CGG | + | chr3_3:56292874-56292893 | Msa0459640:exon | 30.0% |
| AATGAGAGTGAAAATTGCTT+TGG | + | chr3_3:56291398-56291417 | Msa0459640:CDS | 30.0% | |
| !! | AAAATTGCTTTGGAAGAGAA+GGG | + | chr3_3:56291408-56291427 | Msa0459640:CDS | 30.0% |
| !!! | ATCCCAGTTTTGATTCATAA+TGG | + | chr3_3:56291510-56291529 | Msa0459640:CDS | 30.0% |
| ! | TAGCTTGTGATCGTTTATAA+GGG | - | chr3_3:56291617-56291636 | None:intergenic | 30.0% |
| !! | TTAGCTTGTGATCGTTTATA+AGG | - | chr3_3:56291618-56291637 | None:intergenic | 30.0% |
| ATTCAGTAGTTTAGATTTGG+AGG | - | chr3_3:56291743-56291762 | None:intergenic | 30.0% | |
| TGAATATATTCTTCCAGTGT+CGG | + | chr3_3:56291961-56291980 | Msa0459640:intron | 30.0% | |
| TTTAGACCCAAAAAACTTCA+AGG | + | chr3_3:56292177-56292196 | Msa0459640:intron | 30.0% | |
| !!! | CTATAGCCTTGAAGTTTTTT+GGG | - | chr3_3:56292186-56292205 | None:intergenic | 30.0% |
| !!! | ACTATAGCCTTGAAGTTTTT+TGG | - | chr3_3:56292187-56292206 | None:intergenic | 30.0% |
| ! | GTTCGATTTTGAATTTAGAG+GGG | - | chr3_3:56292264-56292283 | None:intergenic | 30.0% |
| ! | GTATCATGGCTTAATTTTGT+TGG | + | chr3_3:56292499-56292518 | Msa0459640:intron | 30.0% |
| TGTTGGATTCTATTTGATGT+AGG | + | chr3_3:56292516-56292535 | Msa0459640:intron | 30.0% | |
| AAGTCATCTCCATCAAAATA+TGG | - | chr3_3:56292652-56292671 | None:intergenic | 30.0% | |
| !!! | TATTTTGATGGAGATGACTT+TGG | + | chr3_3:56292652-56292671 | Msa0459640:CDS | 30.0% |
| !! | ATTTTGATGGAGATGACTTT+GGG | + | chr3_3:56292653-56292672 | Msa0459640:CDS | 30.0% |
| ! | CTTGAATAGAGATTTTCTTG+CGG | + | chr3_3:56292874-56292893 | Msa0459640:exon | 30.0% |
| ATACATGAATAAGGACAGTG+TGG | + | chr3_3:56291344-56291363 | Msa0459640:CDS | 35.0% | |
| !!! | GTGTGGTTTTGTTGGATTTT+TGG | + | chr3_3:56291361-56291380 | Msa0459640:CDS | 35.0% |
| !! | GAAAATTGCTTTGGAAGAGA+AGG | + | chr3_3:56291407-56291426 | Msa0459640:CDS | 35.0% |
| !! | CTCTAAAAGCAAAGAGCTTT+TGG | - | chr3_3:56291469-56291488 | None:intergenic | 35.0% |
| !! | TTTGCTTTTAGAGATGAACC+CGG | + | chr3_3:56291476-56291495 | Msa0459640:CDS | 35.0% |
| ! | ACTGGGATCTTTTTGTAAAC+CGG | - | chr3_3:56291498-56291517 | None:intergenic | 35.0% |
| TTGAGTACATTGATGAAGCT+TGG | + | chr3_3:56291562-56291581 | Msa0459640:CDS | 35.0% | |
| ! | AACGATCACAAGCTAAGTTT+TGG | + | chr3_3:56291622-56291641 | Msa0459640:CDS | 35.0% |
| ! | ACGATCACAAGCTAAGTTTT+GGG | + | chr3_3:56291623-56291642 | Msa0459640:CDS | 35.0% |
| ! | GAGTTATTCATAGGGTATCA+TGG | + | chr3_3:56292485-56292504 | Msa0459640:intron | 35.0% |
| ! | TGACTTTGGGTATGTTGATT+TGG | + | chr3_3:56292666-56292685 | Msa0459640:CDS | 35.0% |
| GTGTAAAACCAACTAGTGAA+GGG | - | chr3_3:56292700-56292719 | None:intergenic | 35.0% | |
| AGTGTAAAACCAACTAGTGA+AGG | - | chr3_3:56292701-56292720 | None:intergenic | 35.0% | |
| ! | CTCTTTTTCCATACACCTTT+TGG | - | chr3_3:56292782-56292801 | None:intergenic | 35.0% |
| CAAAACCATAGATGTTGTGA+GGG | - | chr3_3:56292828-56292847 | None:intergenic | 35.0% | |
| ATACATGAATAAGGACAGTG+TGG | + | chr3_3:56291344-56291363 | Msa0459640:CDS | 35.0% | |
| !!! | GTGTGGTTTTGTTGGATTTT+TGG | + | chr3_3:56291361-56291380 | Msa0459640:CDS | 35.0% |
| !! | GAAAATTGCTTTGGAAGAGA+AGG | + | chr3_3:56291407-56291426 | Msa0459640:CDS | 35.0% |
| !! | CTCTAAAAGCAAAGAGCTTT+TGG | - | chr3_3:56291469-56291488 | None:intergenic | 35.0% |
| !! | TTTGCTTTTAGAGATGAACC+CGG | + | chr3_3:56291476-56291495 | Msa0459640:CDS | 35.0% |
| ! | ACTGGGATCTTTTTGTAAAC+CGG | - | chr3_3:56291498-56291517 | None:intergenic | 35.0% |
| TTGAGTACATTGATGAAGCT+TGG | + | chr3_3:56291562-56291581 | Msa0459640:CDS | 35.0% | |
| ! | AACGATCACAAGCTAAGTTT+TGG | + | chr3_3:56291622-56291641 | Msa0459640:CDS | 35.0% |
| ! | ACGATCACAAGCTAAGTTTT+GGG | + | chr3_3:56291623-56291642 | Msa0459640:CDS | 35.0% |
| ! | GAGTTATTCATAGGGTATCA+TGG | + | chr3_3:56292485-56292504 | Msa0459640:intron | 35.0% |
| ! | TGACTTTGGGTATGTTGATT+TGG | + | chr3_3:56292666-56292685 | Msa0459640:CDS | 35.0% |
| GTGTAAAACCAACTAGTGAA+GGG | - | chr3_3:56292700-56292719 | None:intergenic | 35.0% | |
| AGTGTAAAACCAACTAGTGA+AGG | - | chr3_3:56292701-56292720 | None:intergenic | 35.0% | |
| ! | CTCTTTTTCCATACACCTTT+TGG | - | chr3_3:56292782-56292801 | None:intergenic | 35.0% |
| CAAAACCATAGATGTTGTGA+GGG | - | chr3_3:56292828-56292847 | None:intergenic | 35.0% | |
| !!! | TAAGGACAGTGTGGTTTTGT+TGG | + | chr3_3:56291353-56291372 | Msa0459640:CDS | 40.0% |
| ACTCTCATTGCATATACGCT+TGG | - | chr3_3:56291387-56291406 | None:intergenic | 40.0% | |
| ! | CTGGGATCTTTTTGTAAACC+GGG | - | chr3_3:56291497-56291516 | None:intergenic | 40.0% |
| GATCGTTTATAAGGGTCAGA+GGG | - | chr3_3:56291609-56291628 | None:intergenic | 40.0% | |
| TGATCGTTTATAAGGGTCAG+AGG | - | chr3_3:56291610-56291629 | None:intergenic | 40.0% | |
| ! | CGATCACAAGCTAAGTTTTG+GGG | + | chr3_3:56291624-56291643 | Msa0459640:CDS | 40.0% |
| AATAAGTGGGGCCTAAAACA+AGG | - | chr3_3:56292094-56292113 | None:intergenic | 40.0% | |
| ATCCATACTTCAAGTCCAAG+TGG | + | chr3_3:56292377-56292396 | Msa0459640:intron | 40.0% | |
| TGTAGGTATACAGCATTCGA+AGG | + | chr3_3:56292533-56292552 | Msa0459640:intron | 40.0% | |
| ATTCGAAGGAAGCTATGGAA+AGG | + | chr3_3:56292547-56292566 | Msa0459640:CDS | 40.0% | |
| AAGGAAGCTATGGAAAGGAA+AGG | + | chr3_3:56292552-56292571 | Msa0459640:CDS | 40.0% | |
| AGGAAAGGTTGAAGAACAAG+AGG | + | chr3_3:56292567-56292586 | Msa0459640:CDS | 40.0% | |
| AAGGTTGAAGAACAAGAGGA+AGG | + | chr3_3:56292571-56292590 | Msa0459640:CDS | 40.0% | |
| GAAGGCTTGAAGACTTTAGA+AGG | + | chr3_3:56292610-56292629 | Msa0459640:CDS | 40.0% | |
| ! | AAGACTTTAGAAGGTGAGCT+TGG | + | chr3_3:56292619-56292638 | Msa0459640:CDS | 40.0% |
| !! | GGAGACAAGCCATATTTTGA+TGG | + | chr3_3:56292640-56292659 | Msa0459640:CDS | 40.0% |
| CTCTTATACCCTTCACTAGT+TGG | + | chr3_3:56292689-56292708 | Msa0459640:CDS | 40.0% | |
| GTGTATGGAAAAAGAGAGTG+TGG | + | chr3_3:56292786-56292805 | Msa0459640:CDS | 40.0% | |
| GCAAAACCATAGATGTTGTG+AGG | - | chr3_3:56292829-56292848 | None:intergenic | 40.0% | |
| !! | AGATTTTCTTGCGGATTGCA+TGG | + | chr3_3:56292883-56292902 | Msa0459640:three_prime_UTR | 40.0% |
| !! | GATTTTCTTGCGGATTGCAT+GGG | + | chr3_3:56292884-56292903 | Msa0459640:three_prime_UTR | 40.0% |
| !!! | TAAGGACAGTGTGGTTTTGT+TGG | + | chr3_3:56291353-56291372 | Msa0459640:CDS | 40.0% |
| ACTCTCATTGCATATACGCT+TGG | - | chr3_3:56291387-56291406 | None:intergenic | 40.0% | |
| ! | CTGGGATCTTTTTGTAAACC+GGG | - | chr3_3:56291497-56291516 | None:intergenic | 40.0% |
| GATCGTTTATAAGGGTCAGA+GGG | - | chr3_3:56291609-56291628 | None:intergenic | 40.0% | |
| TGATCGTTTATAAGGGTCAG+AGG | - | chr3_3:56291610-56291629 | None:intergenic | 40.0% | |
| ! | CGATCACAAGCTAAGTTTTG+GGG | + | chr3_3:56291624-56291643 | Msa0459640:CDS | 40.0% |
| AATAAGTGGGGCCTAAAACA+AGG | - | chr3_3:56292094-56292113 | None:intergenic | 40.0% | |
| ATCCATACTTCAAGTCCAAG+TGG | + | chr3_3:56292377-56292396 | Msa0459640:intron | 40.0% | |
| TGTAGGTATACAGCATTCGA+AGG | + | chr3_3:56292533-56292552 | Msa0459640:intron | 40.0% | |
| ATTCGAAGGAAGCTATGGAA+AGG | + | chr3_3:56292547-56292566 | Msa0459640:CDS | 40.0% | |
| AAGGAAGCTATGGAAAGGAA+AGG | + | chr3_3:56292552-56292571 | Msa0459640:CDS | 40.0% | |
| AGGAAAGGTTGAAGAACAAG+AGG | + | chr3_3:56292567-56292586 | Msa0459640:CDS | 40.0% | |
| AAGGTTGAAGAACAAGAGGA+AGG | + | chr3_3:56292571-56292590 | Msa0459640:CDS | 40.0% | |
| GAAGGCTTGAAGACTTTAGA+AGG | + | chr3_3:56292610-56292629 | Msa0459640:CDS | 40.0% | |
| ! | AAGACTTTAGAAGGTGAGCT+TGG | + | chr3_3:56292619-56292638 | Msa0459640:CDS | 40.0% |
| !! | GGAGACAAGCCATATTTTGA+TGG | + | chr3_3:56292640-56292659 | Msa0459640:CDS | 40.0% |
| CTCTTATACCCTTCACTAGT+TGG | + | chr3_3:56292689-56292708 | Msa0459640:CDS | 40.0% | |
| GTGTATGGAAAAAGAGAGTG+TGG | + | chr3_3:56292786-56292805 | Msa0459640:CDS | 40.0% | |
| GCAAAACCATAGATGTTGTG+AGG | - | chr3_3:56292829-56292848 | None:intergenic | 40.0% | |
| !! | AGATTTTCTTGCGGATTGCA+TGG | + | chr3_3:56292883-56292902 | Msa0459640:three_prime_UTR | 40.0% |
| !! | GATTTTCTTGCGGATTGCAT+GGG | + | chr3_3:56292884-56292903 | Msa0459640:three_prime_UTR | 40.0% |
| TAAAGCGAGTGTCTTACCCT+TGG | - | chr3_3:56291988-56292007 | None:intergenic | 45.0% | |
| AGCCACTTGGACTTGAAGTA+TGG | - | chr3_3:56292382-56292401 | None:intergenic | 45.0% | |
| AGTCCAAGTGGCTACATGAA+AGG | + | chr3_3:56292389-56292408 | Msa0459640:intron | 45.0% | |
| TGTCCTTTCATGTAGCCACT+TGG | - | chr3_3:56292395-56292414 | None:intergenic | 45.0% | |
| ACAGCATTCGAAGGAAGCTA+TGG | + | chr3_3:56292542-56292561 | Msa0459640:CDS | 45.0% | |
| AGTGTCCTAAGCTTGTAGCT+TGG | + | chr3_3:56292755-56292774 | Msa0459640:CDS | 45.0% | |
| GTGTCCTAAGCTTGTAGCTT+GGG | + | chr3_3:56292756-56292775 | Msa0459640:CDS | 45.0% | |
| TAAAGCGAGTGTCTTACCCT+TGG | - | chr3_3:56291988-56292007 | None:intergenic | 45.0% | |
| AGCCACTTGGACTTGAAGTA+TGG | - | chr3_3:56292382-56292401 | None:intergenic | 45.0% | |
| AGTCCAAGTGGCTACATGAA+AGG | + | chr3_3:56292389-56292408 | Msa0459640:intron | 45.0% | |
| TGTCCTTTCATGTAGCCACT+TGG | - | chr3_3:56292395-56292414 | None:intergenic | 45.0% | |
| ACAGCATTCGAAGGAAGCTA+TGG | + | chr3_3:56292542-56292561 | Msa0459640:CDS | 45.0% | |
| AGTGTCCTAAGCTTGTAGCT+TGG | + | chr3_3:56292755-56292774 | Msa0459640:CDS | 45.0% | |
| GTGTCCTAAGCTTGTAGCTT+GGG | + | chr3_3:56292756-56292775 | Msa0459640:CDS | 45.0% | |
| !!! | AATAATTTTTAATAATAAGT+GGG | - | chr3_3:56292107-56292126 | None:intergenic | 5.0% |
| !! | TAAAAAAAAAAATATATGTT+TGG | - | chr3_3:56292457-56292476 | None:intergenic | 5.0% |
| !!! | AATAATTTTTAATAATAAGT+GGG | - | chr3_3:56292107-56292126 | None:intergenic | 5.0% |
| !! | TAAAAAAAAAAATATATGTT+TGG | - | chr3_3:56292457-56292476 | None:intergenic | 5.0% |
| !! | ATTCTTCCAGTGTCGGTCCA+AGG | + | chr3_3:56291968-56291987 | Msa0459640:intron | 50.0% |
| !! | TTCTTCCAGTGTCGGTCCAA+GGG | + | chr3_3:56291969-56291988 | Msa0459640:intron | 50.0% |
| TTGGCCCAAGCTACAAGCTT+AGG | - | chr3_3:56292763-56292782 | None:intergenic | 50.0% | |
| AGCTTGTAGCTTGGGCCAAA+AGG | + | chr3_3:56292764-56292783 | Msa0459640:CDS | 50.0% | |
| ! | AGCTTGGGCCAAAAGGTGTA+TGG | + | chr3_3:56292771-56292790 | Msa0459640:CDS | 50.0% |
| CCATAGATGTTGTGAGGGTG+AGG | - | chr3_3:56292823-56292842 | None:intergenic | 50.0% | |
| CCTCACCCTCACAACATCTA+TGG | + | chr3_3:56292820-56292839 | Msa0459640:CDS | 50.0% | |
| GGATTGCATGGGAACTTGAG+AGG | + | chr3_3:56292895-56292914 | Msa0459640:three_prime_UTR | 50.0% | |
| !! | ATTCTTCCAGTGTCGGTCCA+AGG | + | chr3_3:56291968-56291987 | Msa0459640:intron | 50.0% |
| !! | TTCTTCCAGTGTCGGTCCAA+GGG | + | chr3_3:56291969-56291988 | Msa0459640:intron | 50.0% |
| TTGGCCCAAGCTACAAGCTT+AGG | - | chr3_3:56292763-56292782 | None:intergenic | 50.0% | |
| AGCTTGTAGCTTGGGCCAAA+AGG | + | chr3_3:56292764-56292783 | Msa0459640:CDS | 50.0% | |
| ! | AGCTTGGGCCAAAAGGTGTA+TGG | + | chr3_3:56292771-56292790 | Msa0459640:CDS | 50.0% |
| CCATAGATGTTGTGAGGGTG+AGG | - | chr3_3:56292823-56292842 | None:intergenic | 50.0% | |
| CCTCACCCTCACAACATCTA+TGG | + | chr3_3:56292820-56292839 | Msa0459640:CDS | 50.0% | |
| GGATTGCATGGGAACTTGAG+AGG | + | chr3_3:56292895-56292914 | Msa0459640:three_prime_UTR | 50.0% | |
| GGGTCAGAGGGCAAAAGAGA+AGG | - | chr3_3:56291597-56291616 | None:intergenic | 55.0% | |
| TCTTACCCTTGGACCGACAC+TGG | - | chr3_3:56291977-56291996 | None:intergenic | 55.0% | |
| GGGTCAGAGGGCAAAAGAGA+AGG | - | chr3_3:56291597-56291616 | None:intergenic | 55.0% | |
| TCTTACCCTTGGACCGACAC+TGG | - | chr3_3:56291977-56291996 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 56291285 | 56292962 | 56291285 | ID=Msa0459640;Name=Msa0459640 |
| chr3_3 | mRNA | 56291285 | 56292962 | 56291285 | ID=Msa0459640-mRNA-1;Parent=Msa0459640;Name=Msa0459640-mRNA-1;_AED=0.36;_eAED=0.36;_QI=51|1|1|1|1|1|2|80|224 |
| chr3_3 | exon | 56291285 | 56291665 | 56291285 | ID=Msa0459640-mRNA-1:exon:11233;Parent=Msa0459640-mRNA-1 |
| chr3_3 | exon | 56292538 | 56292962 | 56292538 | ID=Msa0459640-mRNA-1:exon:11234;Parent=Msa0459640-mRNA-1 |
| chr3_3 | five_prime_UTR | 56291285 | 56291335 | 56291285 | ID=Msa0459640-mRNA-1:five_prime_utr;Parent=Msa0459640-mRNA-1 |
| chr3_3 | CDS | 56291336 | 56291665 | 56291336 | ID=Msa0459640-mRNA-1:cds;Parent=Msa0459640-mRNA-1 |
| chr3_3 | CDS | 56292538 | 56292882 | 56292538 | ID=Msa0459640-mRNA-1:cds;Parent=Msa0459640-mRNA-1 |
| chr3_3 | three_prime_UTR | 56292883 | 56292962 | 56292883 | ID=Msa0459640-mRNA-1:three_prime_utr;Parent=Msa0459640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
