AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0488580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0488580 MtrunA17_Chr3g0078371 98.434 1213 19 0 1 1213 1 1213 0.0 2481
Msa0488580 MtrunA17_Chr8g0355251 76.280 1172 257 6 58 1211 7 1175 0.0 1808
Msa0488580 MtrunA17_Chr7g0244991 57.458 1133 425 8 115 1192 137 1267 0.0 1309
Msa0488580 MtrunA17_Chr5g0415271 36.696 1120 640 21 121 1189 24 1125 0.0 719
Msa0488580 MtrunA17_Chr8g0363911 36.736 1146 642 21 121 1210 44 1162 0.0 710
Msa0488580 MtrunA17_Chr4g0062251 36.813 1073 602 16 120 1133 38 1093 0.0 686
Msa0488580 MtrunA17_Chr2g0329991 35.091 1157 655 19 120 1199 40 1177 0.0 676
Msa0488580 MtrunA17_Chr8g0342811 35.431 1160 647 25 120 1199 40 1177 0.0 673
Msa0488580 MtrunA17_Chr8g0368691 35.393 1133 660 18 137 1208 67 1188 0.0 671
Msa0488580 MtrunA17_Chr6g0450601 36.460 1130 632 24 120 1178 37 1151 0.0 669
Msa0488580 MtrunA17_Chr3g0091611 36.094 1111 647 17 120 1178 35 1134 0.0 655
Msa0488580 MtrunA17_Chr0c05g0492131 35.721 1117 646 19 120 1178 33 1135 0.0 652
Msa0488580 MtrunA17_Chr2g0324791 33.180 1088 647 21 121 1190 3 1028 0.0 563
Msa0488580 MtrunA17_Chr1g0173111 23.238 525 263 15 421 934 380 775 3.67e-18 90.9
Msa0488580 MtrunA17_Chr8g0382071 23.622 508 250 18 440 934 396 778 9.21e-18 89.4
Msa0488580 MtrunA17_Chr8g0346461 24.859 531 287 17 491 986 352 805 2.21e-17 88.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0488580 AT5G04930.1 69.496 1131 329 10 73 1197 26 1146 0.0 1662
Msa0488580 AT1G59820.1 35.952 1171 668 23 88 1203 3 1146 0.0 718
Msa0488580 AT3G27870.1 36.641 1149 651 20 120 1207 37 1169 0.0 712
Msa0488580 AT1G68710.2 36.413 1115 644 19 120 1178 41 1146 0.0 699
Msa0488580 AT1G68710.1 36.413 1115 644 19 120 1178 41 1146 0.0 699
Msa0488580 AT1G26130.2 35.924 1158 662 21 120 1212 41 1183 0.0 694
Msa0488580 AT1G26130.4 35.924 1158 662 21 120 1212 41 1183 0.0 694
Msa0488580 AT1G26130.3 35.924 1158 662 21 120 1212 41 1183 0.0 694
Msa0488580 AT1G26130.1 35.856 1163 655 21 120 1212 41 1182 0.0 693
Msa0488580 AT3G25610.1 37.176 1119 627 21 120 1178 39 1141 0.0 692
Msa0488580 AT1G54280.2 35.640 1156 640 22 121 1191 41 1177 0.0 687
Msa0488580 AT1G54280.3 35.640 1156 640 22 121 1191 41 1177 0.0 687
Msa0488580 AT1G54280.1 35.640 1156 640 22 121 1191 41 1177 0.0 687
Msa0488580 AT3G13900.1 35.993 1153 638 24 121 1191 41 1175 0.0 686
Msa0488580 AT1G68710.3 35.583 1141 644 20 120 1178 41 1172 0.0 684
Msa0488580 AT1G17500.2 34.847 1145 664 22 120 1202 40 1164 0.0 677
Msa0488580 AT1G17500.1 34.847 1145 664 22 120 1202 40 1164 0.0 677
Msa0488580 AT1G72700.1 34.286 1155 669 20 120 1202 40 1176 0.0 667
Msa0488580 AT1G72700.3 34.286 1155 669 20 120 1202 40 1176 0.0 667
Msa0488580 AT1G72700.2 34.286 1155 669 20 120 1202 40 1176 0.0 667
Msa0488580 AT1G13210.1 35.607 1129 644 23 120 1183 37 1147 0.0 665
Msa0488580 AT3G27870.2 39.067 965 523 16 120 1034 37 986 0.0 659
Msa0488580 AT3G13900.2 38.519 932 484 21 121 979 41 956 0.0 599
Msa0488580 AT3G27870.3 35.750 993 563 18 275 1207 1 978 0.0 584
Msa0488580 AT5G44240.2 32.708 1119 664 23 121 1213 3 1058 3.65e-179 557
Msa0488580 AT5G44240.1 32.708 1119 664 23 121 1213 35 1090 1.59e-178 557
Msa0488580 AT3G13900.3 37.013 924 486 22 121 975 41 937 1.09e-176 548
Msa0488580 AT1G07670.2 23.210 810 454 35 209 986 132 805 3.22e-15 81.6
Msa0488580 AT1G07670.1 23.210 810 454 35 209 986 132 805 3.22e-15 81.6
Msa0488580 AT4G00900.2 24.277 346 196 12 658 986 505 801 2.97e-14 78.6
Msa0488580 AT4G00900.1 24.277 346 196 12 658 986 505 801 2.97e-14 78.6

Find 216 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAATATTAATGAAGATTT+AGG 0.082407 3_4:+8549088 Msa0488580:CDS
CTTCCTCAACTTGCAGTATT+TGG 0.147533 3_4:+8548143 Msa0488580:CDS
TGAATCTGTTGCCTTATTAT+AGG 0.159089 3_4:+8548843 Msa0488580:CDS
TCCTTGTTCTTGTCCTATTT+TGG 0.168882 3_4:+8551462 Msa0488580:CDS
GAAAGCAATGTTTCCATATT+AGG 0.180689 3_4:+8550556 Msa0488580:CDS
GACTCTTGCAGTGGTTATTT+TGG 0.189604 3_4:+8552258 Msa0488580:CDS
CTTGAACTTGACTTTGATTT+TGG 0.194455 3_4:-8547699 None:intergenic
TATTGCTTTGTACATTTCTA+TGG 0.204359 3_4:+8548976 Msa0488580:CDS
TATTGATCATTTGGTGTTCT+TGG 0.208433 3_4:-8547645 None:intergenic
GGTTTAAGAACACTTGTTAT+TGG 0.228096 3_4:+8550421 Msa0488580:CDS
ATATGGATTTATGGCGAATA+TGG 0.231340 3_4:+8548550 Msa0488580:CDS
TAGGAATATATATGGATTTA+TGG 0.232364 3_4:+8548541 Msa0488580:CDS
GGATTGTGACTTACCAAAAT+AGG 0.232979 3_4:-8551475 None:intergenic
TTTCAAGTACTGGACTGTTC+TGG 0.249751 3_4:+8553077 Msa0488580:CDS
TGTAAAGTTGCATATACTTT+AGG 0.260617 3_4:+8553314 Msa0488580:three_prime_UTR
GGCAAAGCATGGTTGTATTT+TGG 0.266627 3_4:+8552176 Msa0488580:CDS
TTAACTTTCACCTTCATCTT+TGG 0.272820 3_4:-8549710 None:intergenic
GCGGCAAGCACTACGGTATT+TGG 0.283459 3_4:+8550496 Msa0488580:CDS
ATGAGTAGTTTAAACCATTC+AGG 0.284184 3_4:+8547858 Msa0488580:CDS
GGGCAGCAGGGATTAAAGTT+TGG 0.289895 3_4:+8550638 Msa0488580:CDS
CACAGCATTGCTTCCACGTT+TGG 0.291090 3_4:+8553123 Msa0488580:CDS
CAGATAAAGTTGAGAATAAC+AGG 0.292097 3_4:+8548252 Msa0488580:CDS
GGCCTCCACTCTTTGCATAT+TGG 0.293028 3_4:+8552197 Msa0488580:CDS
AATAGCAGATGCTCCTAATA+TGG 0.295806 3_4:-8550569 None:intergenic
TTCTTTCATGTTTCAAGTAC+TGG 0.299241 3_4:+8553067 Msa0488580:CDS
TATCAAAGAGTTGCTGAAAA+TGG 0.301203 3_4:+8553220 Msa0488580:CDS
TACTTATAGTCTTCAACTTC+CGG 0.312037 3_4:-8548884 None:intergenic
CAAGAAACTGCTATATCTAT+TGG 0.319476 3_4:+8550679 Msa0488580:CDS
TGAATATTAATGAAGATTTA+GGG 0.320622 3_4:+8549089 Msa0488580:CDS
AAATCAAGTTTCCTATAATA+AGG 0.322804 3_4:-8548854 None:intergenic
GGTGACTCATGCTGTCATTT+GGG 0.323672 3_4:+8552321 Msa0488580:CDS
TTGAAAATGTGGAAGGAAAA+AGG 0.324840 3_4:+8549765 Msa0488580:CDS
ATTTACAACATAACAAACTA+TGG 0.331117 3_4:-8553445 None:intergenic
TATAAAGTTGAGGATACTTT+AGG 0.331612 3_4:-8552087 None:intergenic
ATAGATTACTTCTCTTATCT+TGG 0.335329 3_4:-8553277 None:intergenic
GTAGGAATATATTGATCATT+TGG 0.337392 3_4:-8547654 None:intergenic
GGCAGCAGGGATTAAAGTTT+GGG 0.341999 3_4:+8550639 Msa0488580:CDS
AAACCGAATAGGAATATATA+TGG 0.343990 3_4:+8548533 Msa0488580:CDS
CAGATAGCTTTGATTATTGA+TGG 0.344102 3_4:+8550829 Msa0488580:CDS
AAAGCTATGCTCAACAATTC+AGG 0.344625 3_4:+8548686 Msa0488580:CDS
TTCTATGTTCATTCATTCAA+TGG 0.348996 3_4:+8547803 Msa0488580:CDS
AATCCATATATATTCCTATT+CGG 0.351031 3_4:-8548536 None:intergenic
GGGTGACTCATGCTGTCATT+TGG 0.373060 3_4:+8552320 Msa0488580:CDS
AAAGTTCAACCGAGGTATAC+TGG 0.374044 3_4:+8548494 Msa0488580:CDS
TAGCAAGCATAGGAGATCTT+TGG 0.379581 3_4:+8552236 Msa0488580:CDS
TACGCCAATGCTTGTTCATC+AGG 0.380801 3_4:-8549893 None:intergenic
CTTGGTTGATGATATGAGAT+AGG 0.382046 3_4:-8553259 None:intergenic
GAAGACTAGGTATGCGAAAC+AGG 0.384864 3_4:+8548460 Msa0488580:CDS
GTAGTTTCATTGAGAAGAAA+TGG 0.389157 3_4:+8548300 Msa0488580:CDS
TATTTCAGGTTCAATGTCTT+GGG 0.391352 3_4:+8550220 Msa0488580:intron
TCCTTTCATTCTATAATCAA+TGG 0.397649 3_4:-8553470 None:intergenic
GTTGAAGACTATAAGTACTA+TGG 0.403402 3_4:+8548890 Msa0488580:CDS
TTCAAGTACTGGACTGTTCT+GGG 0.403555 3_4:+8553078 Msa0488580:CDS
GTGCAAACTATTAATCTTGA+TGG 0.406142 3_4:+8548425 Msa0488580:CDS
AATAGGCACAATAGTATTGC+AGG 0.407285 3_4:-8549816 None:intergenic
CTTGCCAATTGCAAAAGCTC+TGG 0.407603 3_4:-8549734 None:intergenic
ATAGAAATGTACAAAGCAAT+AGG 0.408488 3_4:-8548974 None:intergenic
AACTGTTCAAACAAATTCCT+TGG 0.414617 3_4:-8548071 None:intergenic
TCAGGTGTGTCGACAACAAT+AGG 0.414650 3_4:-8549833 None:intergenic
GCACTACCAACTATCATTGT+TGG 0.415594 3_4:+8552031 Msa0488580:CDS
TAACAAGTGTTCTTAAACCT+AGG 0.418411 3_4:-8550417 None:intergenic
GATGCTATACCTCAACTTCC+TGG 0.419239 3_4:+8552382 Msa0488580:CDS
CTTCACTCTTACTCTTCCCT+AGG 0.420906 3_4:+8550400 Msa0488580:CDS
ATATTTCAGGTTCAATGTCT+TGG 0.423854 3_4:+8550219 Msa0488580:intron
CGTAGTGCTTGCCGCTTCAT+AGG 0.425204 3_4:-8550488 None:intergenic
GGAGCTTGTTCGTGTTGGCC+AGG 0.428817 3_4:+8548997 Msa0488580:CDS
ATCGTCTTCGATCATGAAAT+AGG 0.432489 3_4:-8549020 None:intergenic
TCTGCACTGAAACTTTGAAT+TGG 0.432788 3_4:-8549062 None:intergenic
CACATAGTCATTGATATTCA+TGG 0.453838 3_4:+8549962 Msa0488580:CDS
CGTCTGTTTGTGCTGCGGTT+TGG 0.454477 3_4:+8548798 Msa0488580:CDS
TCTATGTTCATTCATTCAAT+GGG 0.455002 3_4:+8547804 Msa0488580:CDS
TTCCGGTGTTGAATTCGGTC+AGG 0.459837 3_4:+8547737 Msa0488580:CDS
ATGCTTATCGAACGAACCTC+CGG 0.461282 3_4:+8549938 Msa0488580:CDS
CACTGGAATTATCAAAGGCT+TGG 0.461744 3_4:+8551404 Msa0488580:CDS
ATTGAGTCGCTAAGGGCAGC+AGG 0.462210 3_4:+8550625 Msa0488580:CDS
CTGTTCTGGGCATTGTTGCT+AGG 0.462546 3_4:+8553091 Msa0488580:CDS
CTTAGCGACTCAATTGCTTC+CGG 0.462840 3_4:-8550616 None:intergenic
GCGTATGCCGCTGCTGCCTA+TGG 0.465587 3_4:+8549911 Msa0488580:CDS
AGAGGGTAGGCAAGCTGTAA+TGG 0.465745 3_4:+8551322 Msa0488580:CDS
TCAACCAACATTGTGCTTAG+AGG 0.467223 3_4:+8548602 Msa0488580:CDS
AAAAGAATGTCGGTTATACT+AGG 0.468898 3_4:+8550268 Msa0488580:CDS
TACCTCAACTTCCTGGCTAC+TGG 0.470827 3_4:+8552389 Msa0488580:CDS
GGTCAATTTACATTTGGCTA+TGG 0.472950 3_4:+8552279 Msa0488580:CDS
AACTCAATCAAAGTTACGTT+GGG 0.474320 3_4:+8553591 Msa0488580:three_prime_UTR
ACCATTGATTATAGAATGAA+AGG 0.475014 3_4:+8553469 Msa0488580:three_prime_UTR
GGATGTTGTCAGATGGTATT+GGG 0.475780 3_4:+8552300 Msa0488580:CDS
TAGAGATGAAGATGCAAGAT+TGG 0.476919 3_4:+8547956 Msa0488580:CDS
TGGATGTTGTCAGATGGTAT+TGG 0.481217 3_4:+8552299 Msa0488580:CDS
TATCCTCAACTTTATAGTGC+TGG 0.490459 3_4:+8552094 Msa0488580:CDS
TCGAGTGGCTCCACTACAAA+AGG 0.491820 3_4:+8551050 Msa0488580:CDS
GTTCCTCTCTTATTGATACA+TGG 0.491866 3_4:+8551380 Msa0488580:CDS
CAATTCTCACTTTCATTCCA+AGG 0.492949 3_4:+8548054 Msa0488580:CDS
ATATGTTTCGATTCTACCGT+TGG 0.493139 3_4:+8548169 Msa0488580:CDS
TATGTGTTCTCAGATAAAAC+TGG 0.493604 3_4:+8549121 Msa0488580:CDS
ACCTAGTTCATTCTCCATGC+CGG 0.494884 3_4:-8549215 None:intergenic
GGTAAACTATAACTGACATA+AGG 0.496795 3_4:-8548940 None:intergenic
CACTGTCGAGTATGTGTACA+AGG 0.498887 3_4:-8550858 None:intergenic
TAAGTACTATGGATGGGGAT+TGG 0.499992 3_4:+8548901 Msa0488580:CDS
GTGAGCTTAAGAATACTAGT+TGG 0.504413 3_4:+8548627 Msa0488580:CDS
CTAGAAATTTGAATATCACT+AGG 0.504990 3_4:-8553175 None:intergenic
GGTTTGGTTGAAGCGTCATA+AGG 0.506168 3_4:+8548814 Msa0488580:CDS
CAACAACTGCAATAAATGAA+TGG 0.507660 3_4:+8551978 Msa0488580:CDS
GACCTTAAAACCAAAGATGA+AGG 0.508119 3_4:+8549700 Msa0488580:CDS
TACACTTACTGAAAATAAGA+TGG 0.509982 3_4:+8549144 Msa0488580:CDS
TATGTCAGTTATAGTTTACC+AGG 0.510492 3_4:+8548943 Msa0488580:CDS
TGATGTATCAATGATTCAAA+TGG 0.510962 3_4:+8551271 Msa0488580:CDS
TAATCTAACAGCTTGACATC+AGG 0.512428 3_4:-8549857 None:intergenic
AAGAATACTAGTTGGGCGCT+TGG 0.513157 3_4:+8548635 Msa0488580:CDS
TAACAATGGTTGATACTTTG+TGG 0.514157 3_4:+8552155 Msa0488580:CDS
CTTTCAACTAGTGATCCAAC+TGG 0.519726 3_4:+8548392 Msa0488580:CDS
AGAATTCCAACAATGATAGT+TGG 0.519744 3_4:-8552037 None:intergenic
TCTTATTGATACATGGTCAC+TGG 0.520717 3_4:+8551387 Msa0488580:CDS
AAGCACTACGGTATTTGGTC+GGG 0.522305 3_4:+8550501 Msa0488580:CDS
CAGAGTATTTCTCTATGTTG+CGG 0.522325 3_4:+8553343 Msa0488580:three_prime_UTR
CGGAAGCAATTGAGTCGCTA+AGG 0.525056 3_4:+8550617 Msa0488580:CDS
AAGACTATAAGTACTATGGA+TGG 0.525277 3_4:+8548894 Msa0488580:CDS
CAAGCACTACGGTATTTGGT+CGG 0.526707 3_4:+8550500 Msa0488580:CDS
TCAGTAAAACTCTTTGTCAA+AGG 0.526985 3_4:+8550304 Msa0488580:CDS
ACTGTGAGGTATGGTTCAAA+AGG 0.527275 3_4:+8547891 Msa0488580:CDS
AACAGCTTGACATCAGGATC+AGG 0.528996 3_4:-8549851 None:intergenic
TGAGCTTAAGAATACTAGTT+GGG 0.531877 3_4:+8548628 Msa0488580:CDS
TGCACATATGCAACACCAGT+TGG 0.534022 3_4:-8548407 None:intergenic
TTAAGTGTGAGAAACCGAAT+AGG 0.534933 3_4:+8548522 Msa0488580:CDS
CTTGGTGTTGCAGTCTATTG+TGG 0.535567 3_4:+8548653 Msa0488580:CDS
CTTGGAGATTGTAACAAAAG+TGG 0.536497 3_4:-8547627 None:intergenic
TCTATGGAGCTTGTTCGTGT+TGG 0.537946 3_4:+8548992 Msa0488580:CDS
GTCTCAAAGATGCTCTTGAA+AGG 0.539452 3_4:+8550779 Msa0488580:CDS
TTGTTTCCCTTGTGAAGAAG+AGG 0.541963 3_4:+8551079 Msa0488580:CDS
GATGTTGGAGTTGGTATAAG+TGG 0.542521 3_4:+8551296 Msa0488580:CDS
GTGAGAGTAATTTGAAGACT+AGG 0.544096 3_4:+8548447 Msa0488580:CDS
TATTGCAGTTGTTGAAGTGA+AGG 0.546160 3_4:-8551969 None:intergenic
GACTATAAGTACTATGGATG+GGG 0.549175 3_4:+8548896 Msa0488580:CDS
ATCGCCTGATGAACAAGCAT+TGG 0.549505 3_4:+8549889 Msa0488580:CDS
AACAAGTGTTCTTAAACCTA+GGG 0.551707 3_4:-8550416 None:intergenic
GCACTTCAGAGTTTGAAGAA+TGG 0.552085 3_4:+8550458 Msa0488580:CDS
AGTACTTGAAACATGAAAGA+AGG 0.553632 3_4:-8553065 None:intergenic
AAATGGAAGGATATTCGAGT+TGG 0.553978 3_4:+8548317 Msa0488580:CDS
CAGATGTCCTCTTCTTCACA+AGG 0.555279 3_4:-8551086 None:intergenic
TCTAAGTTCTCTTTGTGACA+TGG 0.558340 3_4:-8547937 None:intergenic
TGTTGTTCTTTGTTGTCGAG+TGG 0.559401 3_4:+8551035 Msa0488580:CDS
AAAGGTGGTGGTGATTCTGA+AGG 0.562096 3_4:+8547909 Msa0488580:CDS
CAAATGGCTGATGTTGGAGT+TGG 0.562565 3_4:+8551287 Msa0488580:CDS
TAAACTTCAACAAGGCGTGC+CGG 0.564286 3_4:+8550597 Msa0488580:CDS
GTGAATACATACCAGTAGCC+AGG 0.565559 3_4:-8552400 None:intergenic
ATGATTCAAATGGCTGATGT+TGG 0.567389 3_4:+8551281 Msa0488580:CDS
ATTCAATGGGTTCTAGCAAG+AGG 0.567625 3_4:+8547817 Msa0488580:CDS
AGACTATAAGTACTATGGAT+GGG 0.568634 3_4:+8548895 Msa0488580:CDS
AAACTCAATCAAAGTTACGT+TGG 0.569503 3_4:+8553590 Msa0488580:three_prime_UTR
CTTCGATCATGAAATAGGCC+TGG 0.570695 3_4:-8549015 None:intergenic
TTTCATTGTTAACTATCCGA+AGG 0.570789 3_4:+8553367 Msa0488580:three_prime_UTR
GTTGGTATAAGTGGACAAGA+GGG 0.570884 3_4:+8551305 Msa0488580:CDS
AACTTCATATGGATTCTAAG+AGG 0.571610 3_4:+8547604 None:intergenic
GTGGCTCCACTACAAAAGGC+TGG 0.572516 3_4:+8551054 Msa0488580:CDS
TACCAGTAGCCAGGAAGTTG+AGG 0.574838 3_4:-8552391 None:intergenic
TTCGATAAGCATAAAACCAT+AGG 0.579031 3_4:-8549927 None:intergenic
GTTCATCAGGCGATTCACCT+TGG 0.579840 3_4:-8549880 None:intergenic
TGGAAACATTGCTTTCAACA+TGG 0.580153 3_4:-8550549 None:intergenic
TTTGTCTATTACACTAAACA+TGG 0.584696 3_4:-8550338 None:intergenic
CTTCCAAATACTGCAAGTTG+AGG 0.585542 3_4:-8548146 None:intergenic
TGATACTTTGTGGCAAAGCA+TGG 0.585733 3_4:+8552165 Msa0488580:CDS
GTGACTCATGCTGTCATTTG+GGG 0.586654 3_4:+8552322 Msa0488580:CDS
GAGCTCCATCGAAAAGAAGT+AGG 0.587843 3_4:+8548708 Msa0488580:CDS
TTTCATTGAGAAGAAATGGA+AGG 0.588212 3_4:+8548304 Msa0488580:CDS
AATGGAGTTGAAAATGTGGA+AGG 0.590116 3_4:+8549758 Msa0488580:CDS
CGACAGTGAACATGAAGAAG+AGG 0.590828 3_4:+8550873 Msa0488580:CDS
AATATCAATGACTATGTGGC+CGG 0.590915 3_4:-8549957 None:intergenic
ATGACACTAGCCATCGGAGA+TGG 0.592031 3_4:+8551111 Msa0488580:CDS
ACTATTGATATAGCAAGCAT+AGG 0.593863 3_4:+8552226 Msa0488580:CDS
TGTCCAGCACTATAAAGTTG+AGG 0.593916 3_4:-8552097 None:intergenic
ATGGTCACTGGAATTATCAA+AGG 0.595865 3_4:+8551399 Msa0488580:CDS
ATAGCTTTGATTATTGATGG+TGG 0.600389 3_4:+8550832 Msa0488580:CDS
AGGTATGCGAAACAGGAGAC+AGG 0.600615 3_4:+8548467 Msa0488580:CDS
CATAAAACCATAGGCAGCAG+CGG 0.605167 3_4:-8549918 None:intergenic
AGAGTGAAGATGAGCTTCTG+TGG 0.608809 3_4:-8550386 None:intergenic
AGTTGGTATAAGTGGACAAG+AGG 0.609765 3_4:+8551304 Msa0488580:CDS
GGAAGCAATTGAGTCGCTAA+GGG 0.609769 3_4:+8550618 Msa0488580:CDS
ACCGGCATGGAGAATGAACT+AGG 0.612046 3_4:+8549214 Msa0488580:CDS
ACATCCTCTAAGCACAATGT+TGG 0.612946 3_4:-8548606 None:intergenic
CAAGAGGAACAATTCTGTGA+GGG 0.617307 3_4:+8547833 Msa0488580:CDS
TTCCAATATGCAAAGAGTGG+AGG 0.618565 3_4:-8552199 None:intergenic
AGGTATGGTTCAAAAGGTGG+TGG 0.619167 3_4:+8547897 Msa0488580:CDS
AGATCTTTGGACTCTTGCAG+TGG 0.620535 3_4:+8552249 Msa0488580:CDS
CTATGAAGCGGCAAGCACTA+CGG 0.621596 3_4:+8550489 Msa0488580:CDS
CTAGGTGACTACTCAGTGCA+AGG 0.622746 3_4:+8549232 Msa0488580:CDS
ATGGCGAATATGGAAATCGA+TGG 0.624834 3_4:+8548560 Msa0488580:CDS
AGAACTCGTACCATCTCCGA+TGG 0.625531 3_4:-8551121 None:intergenic
GATGGTAAGAAGTTATCACT+TGG 0.629993 3_4:+8548578 Msa0488580:CDS
TTTCAATGTGCAAGCATACG+AGG 0.630431 3_4:+8549169 Msa0488580:CDS
ATGGCATGCAGCCTATGAAG+CGG 0.630585 3_4:+8550477 Msa0488580:CDS
TGAGCATAGCTTTAGTCTCG+CGG 0.631072 3_4:-8548676 None:intergenic
TGGCTATGGATGTTGTCAGA+TGG 0.639339 3_4:+8552293 Msa0488580:CDS
GTATAAGTGGACAAGAGGGT+AGG 0.639872 3_4:+8551309 Msa0488580:CDS
TTGAGTCGCTAAGGGCAGCA+GGG 0.641271 3_4:+8550626 Msa0488580:CDS
AACCTGACCGAATTCAACAC+CGG 0.643469 3_4:-8547739 None:intergenic
AATAGACAAATCACACAACA+TGG 0.644458 3_4:+8550351 Msa0488580:CDS
ATCAATGACTATGTGGCCGG+AGG 0.646233 3_4:-8549954 None:intergenic
AAGGTGGTGGTGATTCTGAA+GGG 0.646912 3_4:+8547910 Msa0488580:CDS
CATGAATATCAATGACTATG+TGG 0.647298 3_4:-8549961 None:intergenic
AGACGATCGATTGTATGATG+AGG 0.647562 3_4:+8549036 Msa0488580:CDS
AATCACGTCTGTTTGTGCTG+CGG 0.649507 3_4:+8548793 Msa0488580:CDS
TGACCATGTATCAATAAGAG+AGG 0.653984 3_4:-8551383 None:intergenic
AAGCAATAGGAATCATGACC+TGG 0.654082 3_4:-8548961 None:intergenic
ACAAACAGAACAAAAGCCAA+CGG 0.667705 3_4:-8548185 None:intergenic
GTGAGGTATGGTTCAAAAGG+TGG 0.669439 3_4:+8547894 Msa0488580:CDS
GTCAAGCTGTTAGATTACCA+AGG 0.672925 3_4:+8549863 Msa0488580:CDS
ACCAAAATAGGACAAGAACA+AGG 0.674548 3_4:-8551463 None:intergenic
AAGAAATGGAGTTGAAAATG+TGG 0.674807 3_4:+8549754 Msa0488580:CDS
TTAATCAAACCAGTATACCT+CGG 0.685339 3_4:-8548503 None:intergenic
TCTGACATGACACTAGCCAT+CGG 0.686147 3_4:+8551105 Msa0488580:CDS
AGATGTCCTCTTCTTCACAA+GGG 0.686778 3_4:-8551085 None:intergenic
GAAAGCAAAACAATGTCACA+AGG 0.691094 3_4:-8548374 None:intergenic
GCAAGAGGAACAATTCTGTG+AGG 0.696594 3_4:+8547832 Msa0488580:CDS
GTAGATTATTGAGTACAATG+TGG 0.715499 3_4:-8552005 None:intergenic
ATTGAAGATAAACTTCAACA+AGG 0.718644 3_4:+8550589 Msa0488580:CDS
CAGGTTCAAAAGTTCAACCG+AGG 0.722835 3_4:+8548486 Msa0488580:CDS
AAAGAAGTAGGCTAGAGACG+CGG 0.758343 3_4:+8548720 Msa0488580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATCAAAAAAATTTATTTGA+GGG - chr3_4:8552933-8552952 None:intergenic 10.0%
!! TTATCAAAAAAATTTATTTG+AGG - chr3_4:8552934-8552953 None:intergenic 10.0%
!! TTGAATATTAATGAAGATTT+AGG + chr3_4:8549088-8549107 Msa0488580:CDS 15.0%
!! TGAATATTAATGAAGATTTA+GGG + chr3_4:8549089-8549108 Msa0488580:CDS 15.0%
!! TCACTAAAATTGTTTAAATT+TGG - chr3_4:8549384-8549403 None:intergenic 15.0%
!!! TTTAGTGAAAACTTTTTAAA+CGG + chr3_4:8549396-8549415 Msa0488580:intron 15.0%
!! AGTTTAATGTAAATTGTAAA+TGG - chr3_4:8550940-8550959 None:intergenic 15.0%
!! CTAGTAAAAAATATATTGAA+AGG - chr3_4:8551175-8551194 None:intergenic 15.0%
!! ATTATGATAGAAATAGAATA+GGG - chr3_4:8552434-8552453 None:intergenic 15.0%
!! AATTATGATAGAAATAGAAT+AGG - chr3_4:8552435-8552454 None:intergenic 15.0%
!! AAAGTTTCATTTAAATACTA+CGG + chr3_4:8552581-8552600 Msa0488580:intron 15.0%
!! TTTCTTATAAATATTTCTCA+AGG - chr3_4:8552706-8552725 None:intergenic 15.0%
!! GTCATTAAAAATAAAAAATG+TGG - chr3_4:8552762-8552781 None:intergenic 15.0%
!! TATTTATTTATATGTTGACA+TGG - chr3_4:8552869-8552888 None:intergenic 15.0%
!!! TTTTAAATGCATATAAAGTA+TGG - chr3_4:8552966-8552985 None:intergenic 15.0%
!!! AATGAGAATTTTGAGTTTTT+CGG + chr3_4:8548005-8548024 Msa0488580:CDS 20.0%
!! AATCCATATATATTCCTATT+CGG - chr3_4:8548539-8548558 None:intergenic 20.0%
!! TAGGAATATATATGGATTTA+TGG + chr3_4:8548541-8548560 Msa0488580:CDS 20.0%
!! AAATCAAGTTTCCTATAATA+AGG - chr3_4:8548857-8548876 None:intergenic 20.0%
!! TAATGATCGAAATAAGATAA+AGG + chr3_4:8549346-8549365 Msa0488580:intron 20.0%
!!! AACTTTTTAAACGGTTAAAA+CGG + chr3_4:8549405-8549424 Msa0488580:intron 20.0%
!! ATATGGTTAATGAACATATA+AGG - chr3_4:8549521-8549540 None:intergenic 20.0%
!! AATAATCACAAAAAGAATGA+TGG + chr3_4:8550084-8550103 Msa0488580:intron 20.0%
!!! TTTCTCATTTTGAATATTTC+AGG + chr3_4:8550206-8550225 Msa0488580:intron 20.0%
!! ATTCATATGTTAAAATCTTG+AGG - chr3_4:8551899-8551918 None:intergenic 20.0%
!!! TATTTTGGTCAATTTACATT+TGG + chr3_4:8552273-8552292 Msa0488580:CDS 20.0%
!!! ATTTCAATTTTCTATCTTCA+AGG - chr3_4:8552625-8552644 None:intergenic 20.0%
!!! TAGAATAGGTTTTTCTAAAA+AGG - chr3_4:8552729-8552748 None:intergenic 20.0%
!! CAAATATTATCTTATAGTTG+AGG - chr3_4:8552807-8552826 None:intergenic 20.0%
!! CTCAACTATAAGATAATATT+TGG + chr3_4:8552805-8552824 Msa0488580:intron 20.0%
!! AACTATAAGATAATATTTGG+TGG + chr3_4:8552808-8552827 Msa0488580:intron 20.0%
!! AAAAATTTATTTGAGGGAAA+AGG - chr3_4:8552927-8552946 None:intergenic 20.0%
!! ATTTACAACATAACAAACTA+TGG - chr3_4:8553448-8553467 None:intergenic 20.0%
!!! AAATTTTGTGACAAACAAAA+GGG - chr3_4:8553547-8553566 None:intergenic 20.0%
!!! TAAATTTTGTGACAAACAAA+AGG - chr3_4:8553548-8553567 None:intergenic 20.0%
! GTAGGAATATATTGATCATT+TGG - chr3_4:8547657-8547676 None:intergenic 25.0%
! TTCTATGTTCATTCATTCAA+TGG + chr3_4:8547803-8547822 Msa0488580:CDS 25.0%
! TCTATGTTCATTCATTCAAT+GGG + chr3_4:8547804-8547823 Msa0488580:CDS 25.0%
! GAAAAACTCAAAATTCTCAT+TGG - chr3_4:8548006-8548025 None:intergenic 25.0%
! AAACCGAATAGGAATATATA+TGG + chr3_4:8548533-8548552 Msa0488580:CDS 25.0%
! ATAGAAATGTACAAAGCAAT+AGG - chr3_4:8548977-8548996 None:intergenic 25.0%
! TATTGCTTTGTACATTTCTA+TGG + chr3_4:8548976-8548995 Msa0488580:CDS 25.0%
! TACACTTACTGAAAATAAGA+TGG + chr3_4:8549144-8549163 Msa0488580:CDS 25.0%
! TACGTTTAGTAGACTATTAA+CGG + chr3_4:8549446-8549465 Msa0488580:intron 25.0%
! AGAAAGATTCATTAGAATGT+GGG - chr3_4:8550191-8550210 None:intergenic 25.0%
! TTTGTCTATTACACTAAACA+TGG - chr3_4:8550341-8550360 None:intergenic 25.0%
! ATTGAAGATAAACTTCAACA+AGG + chr3_4:8550589-8550608 Msa0488580:CDS 25.0%
!!! GATGTTTTATTTGCTGATTT+TGG + chr3_4:8550967-8550986 Msa0488580:intron 25.0%
! TGATGTATCAATGATTCAAA+TGG + chr3_4:8551271-8551290 Msa0488580:CDS 25.0%
! TGATATGATAAACCATTTGT+TGG - chr3_4:8551499-8551518 None:intergenic 25.0%
!!! ATCAGGGTTTTATAGATAAT+TGG + chr3_4:8551569-8551588 Msa0488580:intron 25.0%
!! TGCTCTGAATTATATATTGA+CGG - chr3_4:8551596-8551615 None:intergenic 25.0%
! AGAACATACCTAAAAAACAA+AGG - chr3_4:8551941-8551960 None:intergenic 25.0%
! TATAAAGTTGAGGATACTTT+AGG - chr3_4:8552090-8552109 None:intergenic 25.0%
!!! GAAACTGTTTTTGTTAACAA+TGG + chr3_4:8552141-8552160 Msa0488580:CDS 25.0%
!! ATAAGATAATATTTGGTGGT+TGG + chr3_4:8552812-8552831 Msa0488580:intron 25.0%
!! CAAATTTAAGATGCATAGAA+TGG - chr3_4:8552900-8552919 None:intergenic 25.0%
! AAAGCAATGTATAATTGCAA+AGG - chr3_4:8552989-8553008 None:intergenic 25.0%
!! ATATATTTTACAACCAAACG+TGG - chr3_4:8553139-8553158 None:intergenic 25.0%
! CTAGAAATTTGAATATCACT+AGG - chr3_4:8553178-8553197 None:intergenic 25.0%
! ATAGATTACTTCTCTTATCT+TGG - chr3_4:8553280-8553299 None:intergenic 25.0%
! TGTAAAGTTGCATATACTTT+AGG + chr3_4:8553314-8553333 Msa0488580:three_prime_UTR 25.0%
! AACAAAAAAACTCTATCCTT+CGG - chr3_4:8553386-8553405 None:intergenic 25.0%
!! ACCATTGATTATAGAATGAA+AGG + chr3_4:8553469-8553488 Msa0488580:three_prime_UTR 25.0%
! TCCTTTCATTCTATAATCAA+TGG - chr3_4:8553473-8553492 None:intergenic 25.0%
!! TATTGATCATTTGGTGTTCT+TGG - chr3_4:8547648-8547667 None:intergenic 30.0%
!! CTTGAACTTGACTTTGATTT+TGG - chr3_4:8547702-8547721 None:intergenic 30.0%
ATGAGTAGTTTAAACCATTC+AGG + chr3_4:8547858-8547877 Msa0488580:CDS 30.0%
!!! AAATTCTCATTGGTTTTCTC+AGG - chr3_4:8547996-8548015 None:intergenic 30.0%
AACTGTTCAAACAAATTCCT+TGG - chr3_4:8548074-8548093 None:intergenic 30.0%
CAGATAAAGTTGAGAATAAC+AGG + chr3_4:8548252-8548271 Msa0488580:CDS 30.0%
!! GCAACAATTTTGATGAATGA+CGG + chr3_4:8548278-8548297 Msa0488580:CDS 30.0%
GTAGTTTCATTGAGAAGAAA+TGG + chr3_4:8548300-8548319 Msa0488580:CDS 30.0%
TTTCATTGAGAAGAAATGGA+AGG + chr3_4:8548304-8548323 Msa0488580:CDS 30.0%
GTGCAAACTATTAATCTTGA+TGG + chr3_4:8548425-8548444 Msa0488580:CDS 30.0%
TTAATCAAACCAGTATACCT+CGG - chr3_4:8548506-8548525 None:intergenic 30.0%
ATATGGATTTATGGCGAATA+TGG + chr3_4:8548550-8548569 Msa0488580:CDS 30.0%
TGAGCTTAAGAATACTAGTT+GGG + chr3_4:8548628-8548647 Msa0488580:CDS 30.0%
! TGAATCTGTTGCCTTATTAT+AGG + chr3_4:8548843-8548862 Msa0488580:CDS 30.0%
TACTTATAGTCTTCAACTTC+CGG - chr3_4:8548887-8548906 None:intergenic 30.0%
GTTGAAGACTATAAGTACTA+TGG + chr3_4:8548890-8548909 Msa0488580:CDS 30.0%
AAGACTATAAGTACTATGGA+TGG + chr3_4:8548894-8548913 Msa0488580:CDS 30.0%
AGACTATAAGTACTATGGAT+GGG + chr3_4:8548895-8548914 Msa0488580:CDS 30.0%
GGTAAACTATAACTGACATA+AGG - chr3_4:8548943-8548962 None:intergenic 30.0%
TATGTCAGTTATAGTTTACC+AGG + chr3_4:8548943-8548962 Msa0488580:CDS 30.0%
TATGTGTTCTCAGATAAAAC+TGG + chr3_4:8549121-8549140 Msa0488580:CDS 30.0%
TACAATACCAGATGCATTAA+AGG - chr3_4:8549328-8549347 None:intergenic 30.0%
TTAATGCAGCTTAAATAGGT+GGG - chr3_4:8549558-8549577 None:intergenic 30.0%
TAATTTCTTCTCTCAGTTGA+TGG + chr3_4:8549674-8549693 Msa0488580:intron 30.0%
TTAACTTTCACCTTCATCTT+TGG - chr3_4:8549713-8549732 None:intergenic 30.0%
AAGAAATGGAGTTGAAAATG+TGG + chr3_4:8549754-8549773 Msa0488580:CDS 30.0%
TTGAAAATGTGGAAGGAAAA+AGG + chr3_4:8549765-8549784 Msa0488580:CDS 30.0%
TTCGATAAGCATAAAACCAT+AGG - chr3_4:8549930-8549949 None:intergenic 30.0%
CATGAATATCAATGACTATG+TGG - chr3_4:8549964-8549983 None:intergenic 30.0%
CACATAGTCATTGATATTCA+TGG + chr3_4:8549962-8549981 Msa0488580:CDS 30.0%
! ACTGCAGTGTATGTATTTTT+AGG + chr3_4:8550036-8550055 Msa0488580:intron 30.0%
!! CTGCAGTGTATGTATTTTTA+GGG + chr3_4:8550037-8550056 Msa0488580:intron 30.0%
! ATGATGGTGAAATAATGTCT+AGG + chr3_4:8550100-8550119 Msa0488580:intron 30.0%
! TGATGGTGAAATAATGTCTA+GGG + chr3_4:8550101-8550120 Msa0488580:intron 30.0%
TCATTATCATTATCCAGACT+AGG - chr3_4:8550136-8550155 None:intergenic 30.0%
GAGAAAGATTCATTAGAATG+TGG - chr3_4:8550192-8550211 None:intergenic 30.0%
!! ATATTTCAGGTTCAATGTCT+TGG + chr3_4:8550219-8550238 Msa0488580:intron 30.0%
!! TATTTCAGGTTCAATGTCTT+GGG + chr3_4:8550220-8550239 Msa0488580:intron 30.0%
CAGTGATAGAAAAAGAATGT+CGG + chr3_4:8550258-8550277 Msa0488580:CDS 30.0%
! AAAAGAATGTCGGTTATACT+AGG + chr3_4:8550268-8550287 Msa0488580:CDS 30.0%
TCAGTAAAACTCTTTGTCAA+AGG + chr3_4:8550304-8550323 Msa0488580:CDS 30.0%
AATAGACAAATCACACAACA+TGG + chr3_4:8550351-8550370 Msa0488580:CDS 30.0%
AACAAGTGTTCTTAAACCTA+GGG - chr3_4:8550419-8550438 None:intergenic 30.0%
TAACAAGTGTTCTTAAACCT+AGG - chr3_4:8550420-8550439 None:intergenic 30.0%
!! GGTTTAAGAACACTTGTTAT+TGG + chr3_4:8550421-8550440 Msa0488580:CDS 30.0%
GAAAGCAATGTTTCCATATT+AGG + chr3_4:8550556-8550575 Msa0488580:CDS 30.0%
!! ATTAAAGTTTGGGTTTTGAC+TGG + chr3_4:8550649-8550668 Msa0488580:CDS 30.0%
CAAGAAACTGCTATATCTAT+TGG + chr3_4:8550679-8550698 Msa0488580:CDS 30.0%
!! CAGATAGCTTTGATTATTGA+TGG + chr3_4:8550829-8550848 Msa0488580:CDS 30.0%
!! ATAGCTTTGATTATTGATGG+TGG + chr3_4:8550832-8550851 Msa0488580:CDS 30.0%
! ATTTTGCAATGGGACAATTT+AGG + chr3_4:8551351-8551370 Msa0488580:CDS 30.0%
! GAGTACAATATCTGAAACTA+GGG - chr3_4:8551823-8551842 None:intergenic 30.0%
! TGAGTACAATATCTGAAACT+AGG - chr3_4:8551824-8551843 None:intergenic 30.0%
CAACAACTGCAATAAATGAA+TGG + chr3_4:8551978-8551997 Msa0488580:CDS 30.0%
GTAGATTATTGAGTACAATG+TGG - chr3_4:8552008-8552027 None:intergenic 30.0%
AGAATTCCAACAATGATAGT+TGG - chr3_4:8552040-8552059 None:intergenic 30.0%
! CAAAAACAGTTTCTTGTTGT+AGG - chr3_4:8552134-8552153 None:intergenic 30.0%
! TAACAATGGTTGATACTTTG+TGG + chr3_4:8552155-8552174 Msa0488580:CDS 30.0%
ACTATTGATATAGCAAGCAT+AGG + chr3_4:8552226-8552245 Msa0488580:CDS 30.0%
TTCGAAGATATACACACAAT+TGG - chr3_4:8552509-8552528 None:intergenic 30.0%
GTGGAAAAATCACTTAGAAT+AGG - chr3_4:8552743-8552762 None:intergenic 30.0%
TATTATCTTATAGTTGAGGC+TGG - chr3_4:8552803-8552822 None:intergenic 30.0%
CATATAAAGTATGGTAGCAA+AGG - chr3_4:8552957-8552976 None:intergenic 30.0%
AGTACTTGAAACATGAAAGA+AGG - chr3_4:8553068-8553087 None:intergenic 30.0%
! TTCTTTCATGTTTCAAGTAC+TGG + chr3_4:8553067-8553086 Msa0488580:CDS 30.0%
TATCAAAGAGTTGCTGAAAA+TGG + chr3_4:8553220-8553239 Msa0488580:CDS 30.0%
TTTCATTGTTAACTATCCGA+AGG + chr3_4:8553367-8553386 Msa0488580:three_prime_UTR 30.0%
CTTGGAGATTGTAACAAAAG+TGG - chr3_4:8547630-8547649 None:intergenic 35.0%
TCAGGAAAAACTGGTATTGT+AGG - chr3_4:8547675-8547694 None:intergenic 35.0%
! AGCAACACAGTAACATTTTC+CGG + chr3_4:8547720-8547739 Msa0488580:CDS 35.0%
!! ACATTTTCCGGTGTTGAATT+CGG + chr3_4:8547732-8547751 Msa0488580:CDS 35.0%
!! CAGTACTTTTTGATCCTGAA+TGG - chr3_4:8547875-8547894 None:intergenic 35.0%
!! TCAAAAAGTACTGTGAGGTA+TGG + chr3_4:8547882-8547901 Msa0488580:CDS 35.0%
TCTAAGTTCTCTTTGTGACA+TGG - chr3_4:8547940-8547959 None:intergenic 35.0%
TAGAGATGAAGATGCAAGAT+TGG + chr3_4:8547956-8547975 Msa0488580:CDS 35.0%
CAATTCTCACTTTCATTCCA+AGG + chr3_4:8548054-8548073 Msa0488580:CDS 35.0%
ATATGTTTCGATTCTACCGT+TGG + chr3_4:8548169-8548188 Msa0488580:CDS 35.0%
ACAAACAGAACAAAAGCCAA+CGG - chr3_4:8548188-8548207 None:intergenic 35.0%
!! GCTTTTGTTCTGTTTGTTAC+TGG + chr3_4:8548191-8548210 Msa0488580:CDS 35.0%
!! TGAAAGATGCTTTTGAGGAT+TGG + chr3_4:8548216-8548235 Msa0488580:CDS 35.0%
AAATGGAAGGATATTCGAGT+TGG + chr3_4:8548317-8548336 Msa0488580:CDS 35.0%
GAAAGCAAAACAATGTCACA+AGG - chr3_4:8548377-8548396 None:intergenic 35.0%
GTGAGAGTAATTTGAAGACT+AGG + chr3_4:8548447-8548466 Msa0488580:CDS 35.0%
TTAAGTGTGAGAAACCGAAT+AGG + chr3_4:8548522-8548541 Msa0488580:CDS 35.0%
GATGGTAAGAAGTTATCACT+TGG + chr3_4:8548578-8548597 Msa0488580:CDS 35.0%
GTGAGCTTAAGAATACTAGT+TGG + chr3_4:8548627-8548646 Msa0488580:CDS 35.0%
AAAGCTATGCTCAACAATTC+AGG + chr3_4:8548686-8548705 Msa0488580:CDS 35.0%
!! GAAACTTGATTTTTCGAAGC+CGG + chr3_4:8548865-8548884 Msa0488580:CDS 35.0%
GACTATAAGTACTATGGATG+GGG + chr3_4:8548896-8548915 Msa0488580:CDS 35.0%
ATCGTCTTCGATCATGAAAT+AGG - chr3_4:8549023-8549042 None:intergenic 35.0%
TCTGCACTGAAACTTTGAAT+TGG - chr3_4:8549065-8549084 None:intergenic 35.0%
GATTACAGTTCCACAAAAAC+CGG + chr3_4:8549196-8549215 Msa0488580:CDS 35.0%
AACATTGCCTTTAATGCATC+TGG + chr3_4:8549318-8549337 Msa0488580:intron 35.0%
ACGGTTAAAACGGTTCAAAT+AGG + chr3_4:8549415-8549434 Msa0488580:intron 35.0%
GTTAAAACGGTTCAAATAGG+TGG + chr3_4:8549418-8549437 Msa0488580:intron 35.0%
AATGCAACTTATTAACCACG+AGG - chr3_4:8549477-8549496 None:intergenic 35.0%
GGGTAATTACGTTCAGTATA+TGG - chr3_4:8549538-8549557 None:intergenic 35.0%
GTTAATGCAGCTTAAATAGG+TGG - chr3_4:8549559-8549578 None:intergenic 35.0%
GTGGTTAATGCAGCTTAAAT+AGG - chr3_4:8549562-8549581 None:intergenic 35.0%
AGTTGCGACAATAATCTAAG+TGG - chr3_4:8549581-8549600 None:intergenic 35.0%
GACCTTAAAACCAAAGATGA+AGG + chr3_4:8549700-8549719 Msa0488580:CDS 35.0%
!!! CACCTTCATCTTTGGTTTTA+AGG - chr3_4:8549705-8549724 None:intergenic 35.0%
! TAATCCAGAGCTTTTGCAAT+TGG + chr3_4:8549730-8549749 Msa0488580:CDS 35.0%
! CTTTTGCAATTGGCAAGAAA+TGG + chr3_4:8549740-8549759 Msa0488580:CDS 35.0%
AATGGAGTTGAAAATGTGGA+AGG + chr3_4:8549758-8549777 Msa0488580:CDS 35.0%
AATAGGCACAATAGTATTGC+AGG - chr3_4:8549819-8549838 None:intergenic 35.0%
TAATCTAACAGCTTGACATC+AGG - chr3_4:8549860-8549879 None:intergenic 35.0%
AATATCAATGACTATGTGGC+CGG - chr3_4:8549960-8549979 None:intergenic 35.0%
ATACACTGCAGTTACGATTA+TGG - chr3_4:8550028-8550047 None:intergenic 35.0%
! AGAGTTTTACTGAACTGTCA+GGG - chr3_4:8550297-8550316 None:intergenic 35.0%
! AAGAGTTTTACTGAACTGTC+AGG - chr3_4:8550298-8550317 None:intergenic 35.0%
TGGAAACATTGCTTTCAACA+TGG - chr3_4:8550552-8550571 None:intergenic 35.0%
AATAGCAGATGCTCCTAATA+TGG - chr3_4:8550572-8550591 None:intergenic 35.0%
GTATCCTTGTGTTACATTAC+AGG + chr3_4:8551242-8551261 Msa0488580:intron 35.0%
ATGATTCAAATGGCTGATGT+TGG + chr3_4:8551281-8551300 Msa0488580:CDS 35.0%
! AATGGCATCAGATTTTGCAA+TGG + chr3_4:8551340-8551359 Msa0488580:CDS 35.0%
! ATGGCATCAGATTTTGCAAT+GGG + chr3_4:8551341-8551360 Msa0488580:CDS 35.0%
GTTCCTCTCTTATTGATACA+TGG + chr3_4:8551380-8551399 Msa0488580:CDS 35.0%
TGACCATGTATCAATAAGAG+AGG - chr3_4:8551386-8551405 None:intergenic 35.0%
TCTTATTGATACATGGTCAC+TGG + chr3_4:8551387-8551406 Msa0488580:CDS 35.0%
ATGGTCACTGGAATTATCAA+AGG + chr3_4:8551399-8551418 Msa0488580:CDS 35.0%
! TCCTTGTTCTTGTCCTATTT+TGG + chr3_4:8551462-8551481 Msa0488580:CDS 35.0%
ACCAAAATAGGACAAGAACA+AGG - chr3_4:8551466-8551485 None:intergenic 35.0%
GGATTGTGACTTACCAAAAT+AGG - chr3_4:8551478-8551497 None:intergenic 35.0%
GTAAGTCACAATCCAACAAA+TGG + chr3_4:8551484-8551503 Msa0488580:intron 35.0%
TTGATGTTTGTGTCAGTATC+AGG + chr3_4:8551552-8551571 Msa0488580:intron 35.0%
TGATGTTTGTGTCAGTATCA+GGG + chr3_4:8551553-8551572 Msa0488580:intron 35.0%
! AACTAGGGTTTAGTCTCTTT+TGG - chr3_4:8551808-8551827 None:intergenic 35.0%
!!! GTTCTGTGCCTTTGTTTTTT+AGG + chr3_4:8551930-8551949 Msa0488580:intron 35.0%
TATTGCAGTTGTTGAAGTGA+AGG - chr3_4:8551972-8551991 None:intergenic 35.0%
TATCCTCAACTTTATAGTGC+TGG + chr3_4:8552094-8552113 Msa0488580:CDS 35.0%
! CTTTTCCAATATGCAAAGAG+TGG - chr3_4:8552205-8552224 None:intergenic 35.0%
GGTCAATTTACATTTGGCTA+TGG + chr3_4:8552279-8552298 Msa0488580:CDS 35.0%
TTTCCTAACTTTGACATTGC+AGG + chr3_4:8553041-8553060 Msa0488580:intron 35.0%
TTCCTAACTTTGACATTGCA+GGG + chr3_4:8553042-8553061 Msa0488580:intron 35.0%
!! CTTGGTTGATGATATGAGAT+AGG - chr3_4:8553262-8553281 None:intergenic 35.0%
! CAGAGTATTTCTCTATGTTG+CGG + chr3_4:8553343-8553362 Msa0488580:three_prime_UTR 35.0%
! TTTGGTAGCTCAGGAAAAAC+TGG - chr3_4:8547684-8547703 None:intergenic 40.0%
!! GACTTTGATTTTGGTAGCTC+AGG - chr3_4:8547693-8547712 None:intergenic 40.0%
! ATTCAATGGGTTCTAGCAAG+AGG + chr3_4:8547817-8547836 Msa0488580:CDS 40.0%
CAAGAGGAACAATTCTGTGA+GGG + chr3_4:8547833-8547852 Msa0488580:CDS 40.0%
!! CAGGATCAAAAAGTACTGTG+AGG + chr3_4:8547877-8547896 Msa0488580:CDS 40.0%
ACTGTGAGGTATGGTTCAAA+AGG + chr3_4:8547891-8547910 Msa0488580:CDS 40.0%
CTTCCTCAACTTGCAGTATT+TGG + chr3_4:8548143-8548162 Msa0488580:CDS 40.0%
CTTCCAAATACTGCAAGTTG+AGG - chr3_4:8548149-8548168 None:intergenic 40.0%
! TGGTGTGAAAGATGCTTTTG+AGG + chr3_4:8548211-8548230 Msa0488580:CDS 40.0%
!! AAGATGCTTTTGAGGATTGG+AGG + chr3_4:8548219-8548238 Msa0488580:CDS 40.0%
CTTTCAACTAGTGATCCAAC+TGG + chr3_4:8548392-8548411 Msa0488580:CDS 40.0%
AAAGTTCAACCGAGGTATAC+TGG + chr3_4:8548494-8548513 Msa0488580:CDS 40.0%
ATGGCGAATATGGAAATCGA+TGG + chr3_4:8548560-8548579 Msa0488580:CDS 40.0%
TCAACCAACATTGTGCTTAG+AGG + chr3_4:8548602-8548621 Msa0488580:CDS 40.0%
ACATCCTCTAAGCACAATGT+TGG - chr3_4:8548609-8548628 None:intergenic 40.0%
! TCTAGCCTACTTCTTTTCGA+TGG - chr3_4:8548716-8548735 None:intergenic 40.0%
TAAGTACTATGGATGGGGAT+TGG + chr3_4:8548901-8548920 Msa0488580:CDS 40.0%
AAGCAATAGGAATCATGACC+TGG - chr3_4:8548964-8548983 None:intergenic 40.0%
AGACGATCGATTGTATGATG+AGG + chr3_4:8549036-8549055 Msa0488580:CDS 40.0%
TTTCAATGTGCAAGCATACG+AGG + chr3_4:8549169-8549188 Msa0488580:CDS 40.0%
! CTATTAACGGATATACCTCG+TGG + chr3_4:8549459-8549478 Msa0488580:intron 40.0%
GTCAAGCTGTTAGATTACCA+AGG + chr3_4:8549863-8549882 Msa0488580:CDS 40.0%
GCACTTCAGAGTTTGAAGAA+TGG + chr3_4:8550458-8550477 Msa0488580:CDS 40.0%
GTCTCAAAGATGCTCTTGAA+AGG + chr3_4:8550779-8550798 Msa0488580:CDS 40.0%
! TGTTGTTCTTTGTTGTCGAG+TGG + chr3_4:8551035-8551054 Msa0488580:CDS 40.0%
! ACAATACCAGCCTTTTGTAG+TGG - chr3_4:8551063-8551082 None:intergenic 40.0%
TTGTTTCCCTTGTGAAGAAG+AGG + chr3_4:8551079-8551098 Msa0488580:CDS 40.0%
AGATGTCCTCTTCTTCACAA+GGG - chr3_4:8551088-8551107 None:intergenic 40.0%
AGCACCTGTAATGTAACACA+AGG - chr3_4:8551249-8551268 None:intergenic 40.0%
!! GATGTTGGAGTTGGTATAAG+TGG + chr3_4:8551296-8551315 Msa0488580:CDS 40.0%
! AGTTGGTATAAGTGGACAAG+AGG + chr3_4:8551304-8551323 Msa0488580:CDS 40.0%
GTTGGTATAAGTGGACAAGA+GGG + chr3_4:8551305-8551324 Msa0488580:CDS 40.0%
CACTGGAATTATCAAAGGCT+TGG + chr3_4:8551404-8551423 Msa0488580:CDS 40.0%
! GGGTATCTATAGCCTTTTGT+GGG - chr3_4:8551760-8551779 None:intergenic 40.0%
GCACTACCAACTATCATTGT+TGG + chr3_4:8552031-8552050 Msa0488580:CDS 40.0%
TGTCCAGCACTATAAAGTTG+AGG - chr3_4:8552100-8552119 None:intergenic 40.0%
TGATACTTTGTGGCAAAGCA+TGG + chr3_4:8552165-8552184 Msa0488580:CDS 40.0%
! GGCAAAGCATGGTTGTATTT+TGG + chr3_4:8552176-8552195 Msa0488580:CDS 40.0%
TTCCAATATGCAAAGAGTGG+AGG - chr3_4:8552202-8552221 None:intergenic 40.0%
TAGCAAGCATAGGAGATCTT+TGG + chr3_4:8552236-8552255 Msa0488580:CDS 40.0%
! GACTCTTGCAGTGGTTATTT+TGG + chr3_4:8552258-8552277 Msa0488580:CDS 40.0%
TGGATGTTGTCAGATGGTAT+TGG + chr3_4:8552299-8552318 Msa0488580:CDS 40.0%
GGATGTTGTCAGATGGTATT+GGG + chr3_4:8552300-8552319 Msa0488580:CDS 40.0%
! TATAGTTGAGGCTGGTTACA+TGG - chr3_4:8552795-8552814 None:intergenic 40.0%
!! TTTCAAGTACTGGACTGTTC+TGG + chr3_4:8553077-8553096 Msa0488580:CDS 40.0%
!! TTCAAGTACTGGACTGTTCT+GGG + chr3_4:8553078-8553097 Msa0488580:CDS 40.0%
AACCTGACCGAATTCAACAC+CGG - chr3_4:8547742-8547761 None:intergenic 45.0%
GCAAGAGGAACAATTCTGTG+AGG + chr3_4:8547832-8547851 Msa0488580:CDS 45.0%
GTGAGGTATGGTTCAAAAGG+TGG + chr3_4:8547894-8547913 Msa0488580:CDS 45.0%
AGGTATGGTTCAAAAGGTGG+TGG + chr3_4:8547897-8547916 Msa0488580:CDS 45.0%
! AAAGGTGGTGGTGATTCTGA+AGG + chr3_4:8547909-8547928 Msa0488580:CDS 45.0%
! AAGGTGGTGGTGATTCTGAA+GGG + chr3_4:8547910-8547929 Msa0488580:CDS 45.0%
TGCACATATGCAACACCAGT+TGG - chr3_4:8548410-8548429 None:intergenic 45.0%
GAAGACTAGGTATGCGAAAC+AGG + chr3_4:8548460-8548479 Msa0488580:CDS 45.0%
CAGGTTCAAAAGTTCAACCG+AGG + chr3_4:8548486-8548505 Msa0488580:CDS 45.0%
AAGAATACTAGTTGGGCGCT+TGG + chr3_4:8548635-8548654 Msa0488580:CDS 45.0%
!! CTTGGTGTTGCAGTCTATTG+TGG + chr3_4:8548653-8548672 Msa0488580:CDS 45.0%
!! TGAGCATAGCTTTAGTCTCG+CGG - chr3_4:8548679-8548698 None:intergenic 45.0%
GAGCTCCATCGAAAAGAAGT+AGG + chr3_4:8548708-8548727 Msa0488580:CDS 45.0%
AAAGAAGTAGGCTAGAGACG+CGG + chr3_4:8548720-8548739 Msa0488580:CDS 45.0%
AATCACGTCTGTTTGTGCTG+CGG + chr3_4:8548793-8548812 Msa0488580:CDS 45.0%
! GGTTTGGTTGAAGCGTCATA+AGG + chr3_4:8548814-8548833 Msa0488580:CDS 45.0%
! TCTATGGAGCTTGTTCGTGT+TGG + chr3_4:8548992-8549011 Msa0488580:CDS 45.0%
CTTCGATCATGAAATAGGCC+TGG - chr3_4:8549018-8549037 None:intergenic 45.0%
!!! ATTCTCCATGCCGGTTTTTG+TGG - chr3_4:8549209-8549228 None:intergenic 45.0%
ACCTAGTTCATTCTCCATGC+CGG - chr3_4:8549218-8549237 None:intergenic 45.0%
CTTGCCAATTGCAAAAGCTC+TGG - chr3_4:8549737-8549756 None:intergenic 45.0%
! TCAGGTGTGTCGACAACAAT+AGG - chr3_4:8549836-8549855 None:intergenic 45.0%
AACAGCTTGACATCAGGATC+AGG - chr3_4:8549854-8549873 None:intergenic 45.0%
ATCGCCTGATGAACAAGCAT+TGG + chr3_4:8549889-8549908 Msa0488580:CDS 45.0%
TACGCCAATGCTTGTTCATC+AGG - chr3_4:8549896-8549915 None:intergenic 45.0%
CATAAAACCATAGGCAGCAG+CGG - chr3_4:8549921-8549940 None:intergenic 45.0%
ATGCTTATCGAACGAACCTC+CGG + chr3_4:8549938-8549957 Msa0488580:CDS 45.0%
AGAGTGAAGATGAGCTTCTG+TGG - chr3_4:8550389-8550408 None:intergenic 45.0%
CTTCACTCTTACTCTTCCCT+AGG + chr3_4:8550400-8550419 Msa0488580:CDS 45.0%
CAAGCACTACGGTATTTGGT+CGG + chr3_4:8550500-8550519 Msa0488580:CDS 45.0%
AAGCACTACGGTATTTGGTC+GGG + chr3_4:8550501-8550520 Msa0488580:CDS 45.0%
TAAACTTCAACAAGGCGTGC+CGG + chr3_4:8550597-8550616 Msa0488580:CDS 45.0%
CTTAGCGACTCAATTGCTTC+CGG - chr3_4:8550619-8550638 None:intergenic 45.0%
GGAAGCAATTGAGTCGCTAA+GGG + chr3_4:8550618-8550637 Msa0488580:CDS 45.0%
GGCAGCAGGGATTAAAGTTT+GGG + chr3_4:8550639-8550658 Msa0488580:CDS 45.0%
CACTGTCGAGTATGTGTACA+AGG - chr3_4:8550861-8550880 None:intergenic 45.0%
CGACAGTGAACATGAAGAAG+AGG + chr3_4:8550873-8550892 Msa0488580:CDS 45.0%
CAGATGTCCTCTTCTTCACA+AGG - chr3_4:8551089-8551108 None:intergenic 45.0%
TCTGACATGACACTAGCCAT+CGG + chr3_4:8551105-8551124 Msa0488580:CDS 45.0%
CAAATGGCTGATGTTGGAGT+TGG + chr3_4:8551287-8551306 Msa0488580:CDS 45.0%
GTATAAGTGGACAAGAGGGT+AGG + chr3_4:8551309-8551328 Msa0488580:CDS 45.0%
! ATGCTTCTAGAAGCCTTCTG+AGG - chr3_4:8551674-8551693 None:intergenic 45.0%
! ACTTAGCGCTCAAGTTGCTT+GGG + chr3_4:8551712-8551731 Msa0488580:intron 45.0%
CGGAAAAACAAGCCCACAAA+AGG + chr3_4:8551745-8551764 Msa0488580:intron 45.0%
!! GGGGTATCTATAGCCTTTTG+TGG - chr3_4:8551761-8551780 None:intergenic 45.0%
TGCCTTGAGAATGACCTCAA+GGG - chr3_4:8551782-8551801 None:intergenic 45.0%
ATGCCTTGAGAATGACCTCA+AGG - chr3_4:8551783-8551802 None:intergenic 45.0%
AGATCTTTGGACTCTTGCAG+TGG + chr3_4:8552249-8552268 Msa0488580:CDS 45.0%
TGGCTATGGATGTTGTCAGA+TGG + chr3_4:8552293-8552312 Msa0488580:CDS 45.0%
! GGTGACTCATGCTGTCATTT+GGG + chr3_4:8552321-8552340 Msa0488580:CDS 45.0%
! GTGACTCATGCTGTCATTTG+GGG + chr3_4:8552322-8552341 Msa0488580:CDS 45.0%
GATGCTATACCTCAACTTCC+TGG + chr3_4:8552382-8552401 Msa0488580:CDS 45.0%
GTGAATACATACCAGTAGCC+AGG - chr3_4:8552403-8552422 None:intergenic 45.0%
! TTCCGGTGTTGAATTCGGTC+AGG + chr3_4:8547737-8547756 Msa0488580:CDS 50.0%
AGGTATGCGAAACAGGAGAC+AGG + chr3_4:8548467-8548486 Msa0488580:CDS 50.0%
CAGTTCCACAAAAACCGGCA+TGG + chr3_4:8549201-8549220 Msa0488580:CDS 50.0%
ACCGGCATGGAGAATGAACT+AGG + chr3_4:8549214-8549233 Msa0488580:CDS 50.0%
CTAGGTGACTACTCAGTGCA+AGG + chr3_4:8549232-8549251 Msa0488580:CDS 50.0%
GTTCATCAGGCGATTCACCT+TGG - chr3_4:8549883-8549902 None:intergenic 50.0%
ATCAATGACTATGTGGCCGG+AGG - chr3_4:8549957-8549976 None:intergenic 50.0%
ATGGCATGCAGCCTATGAAG+CGG + chr3_4:8550477-8550496 Msa0488580:CDS 50.0%
CTATGAAGCGGCAAGCACTA+CGG + chr3_4:8550489-8550508 Msa0488580:CDS 50.0%
CGGAAGCAATTGAGTCGCTA+AGG + chr3_4:8550617-8550636 Msa0488580:CDS 50.0%
GGGCAGCAGGGATTAAAGTT+TGG + chr3_4:8550638-8550657 Msa0488580:CDS 50.0%
TCGAGTGGCTCCACTACAAA+AGG + chr3_4:8551050-8551069 Msa0488580:CDS 50.0%
ATGACACTAGCCATCGGAGA+TGG + chr3_4:8551111-8551130 Msa0488580:CDS 50.0%
AGAACTCGTACCATCTCCGA+TGG - chr3_4:8551124-8551143 None:intergenic 50.0%
AGAGGGTAGGCAAGCTGTAA+TGG + chr3_4:8551322-8551341 Msa0488580:CDS 50.0%
! CTTCTAGAAGCCTTCTGAGG+TGG - chr3_4:8551671-8551690 None:intergenic 50.0%
! GACTTAGCGCTCAAGTTGCT+TGG + chr3_4:8551711-8551730 Msa0488580:intron 50.0%
! CTTAGCGCTCAAGTTGCTTG+GGG + chr3_4:8551713-8551732 Msa0488580:intron 50.0%
! TTAGCGCTCAAGTTGCTTGG+GGG + chr3_4:8551714-8551733 Msa0488580:intron 50.0%
AGGCTATAGATACCCCCTTG+AGG + chr3_4:8551765-8551784 Msa0488580:intron 50.0%
CCTTGAGAATGACCTCAAGG+GGG - chr3_4:8551780-8551799 None:intergenic 50.0%
GCCTTGAGAATGACCTCAAG+GGG - chr3_4:8551781-8551800 None:intergenic 50.0%
GGCCTCCACTCTTTGCATAT+TGG + chr3_4:8552197-8552216 Msa0488580:CDS 50.0%
GGGTGACTCATGCTGTCATT+TGG + chr3_4:8552320-8552339 Msa0488580:CDS 50.0%
TACCTCAACTTCCTGGCTAC+TGG + chr3_4:8552389-8552408 Msa0488580:CDS 50.0%
TACCAGTAGCCAGGAAGTTG+AGG - chr3_4:8552394-8552413 None:intergenic 50.0%
GGCCCTGCAATGTCAAAGTT+AGG - chr3_4:8553047-8553066 None:intergenic 50.0%
! CTGTTCTGGGCATTGTTGCT+AGG + chr3_4:8553091-8553110 Msa0488580:CDS 50.0%
CACAGCATTGCTTCCACGTT+TGG + chr3_4:8553123-8553142 Msa0488580:CDS 50.0%
CGTCTGTTTGTGCTGCGGTT+TGG + chr3_4:8548798-8548817 Msa0488580:CDS 55.0%
AGGGTAGTGTCTGCCTAGTC+TGG + chr3_4:8550120-8550139 Msa0488580:intron 55.0%
! CGTAGTGCTTGCCGCTTCAT+AGG - chr3_4:8550491-8550510 None:intergenic 55.0%
GCGGCAAGCACTACGGTATT+TGG + chr3_4:8550496-8550515 Msa0488580:CDS 55.0%
ATTGAGTCGCTAAGGGCAGC+AGG + chr3_4:8550625-8550644 Msa0488580:CDS 55.0%
TTGAGTCGCTAAGGGCAGCA+GGG + chr3_4:8550626-8550645 Msa0488580:CDS 55.0%
GTGGCTCCACTACAAAAGGC+TGG + chr3_4:8551054-8551073 Msa0488580:CDS 55.0%
GTTGCTTGGGGGCTAAGTCA+CGG + chr3_4:8551725-8551744 Msa0488580:intron 55.0%
CCCCCTTGAGGTCATTCTCA+AGG + chr3_4:8551777-8551796 Msa0488580:intron 55.0%
! GGAGCTTGTTCGTGTTGGCC+AGG + chr3_4:8548997-8549016 Msa0488580:CDS 60.0%
! TCTGAGGTGGTGCCCTTTGG+AGG - chr3_4:8551658-8551677 None:intergenic 60.0%
!! CCTTCTGAGGTGGTGCCCTT+TGG - chr3_4:8551661-8551680 None:intergenic 60.0%
!! CCAAAGGGCACCACCTCAGA+AGG + chr3_4:8551658-8551677 Msa0488580:intron 60.0%
GCGTATGCCGCTGCTGCCTA+TGG + chr3_4:8549911-8549930 Msa0488580:CDS 65.0%
AGAGCACACCGCCCTCCAGA+AGG + chr3_4:8551610-8551629 Msa0488580:intron 65.0%
GAGCACACCGCCCTCCAGAA+GGG + chr3_4:8551611-8551630 Msa0488580:intron 65.0%
! GTTTGGGCCCTTCTGGAGGG+CGG - chr3_4:8551621-8551640 None:intergenic 65.0%
GCCCTCCAGAAGGGCCCAAA+CGG + chr3_4:8551620-8551639 Msa0488580:intron 65.0%
GCCGTTTGGGCCCTTCTGGA+GGG - chr3_4:8551624-8551643 None:intergenic 65.0%
AGAAGGGCCCAAACGGCCCT+GGG + chr3_4:8551627-8551646 Msa0488580:intron 65.0%
! CCCTTTGGAGGACGTGCCCA+GGG - chr3_4:8551646-8551665 None:intergenic 65.0%
CCCTGGGCACGTCCTCCAAA+GGG + chr3_4:8551643-8551662 Msa0488580:intron 65.0%
GGCCGTTTGGGCCCTTCTGG+AGG - chr3_4:8551625-8551644 None:intergenic 70.0%
CAGGGCCGTTTGGGCCCTTC+TGG - chr3_4:8551628-8551647 None:intergenic 70.0%
CAGAAGGGCCCAAACGGCCC+TGG + chr3_4:8551626-8551645 Msa0488580:intron 70.0%
GGACGTGCCCAGGGCCGTTT+GGG - chr3_4:8551637-8551656 None:intergenic 70.0%
AGGACGTGCCCAGGGCCGTT+TGG - chr3_4:8551638-8551657 None:intergenic 70.0%
GCCCTGGGCACGTCCTCCAA+AGG + chr3_4:8551642-8551661 Msa0488580:intron 70.0%
! GCCCTTTGGAGGACGTGCCC+AGG - chr3_4:8551647-8551666 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 8547612 8553610 8547612 ID=Msa0488580;Name=Msa0488580
chr3_4 mRNA 8547612 8553610 8547612 ID=Msa0488580-mRNA-1;Parent=Msa0488580;Name=Msa0488580-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|0.85|1|1|1|7|325|1213
chr3_4 exon 8547612 8549253 8547612 ID=Msa0488580-mRNA-1:exon:2787;Parent=Msa0488580-mRNA-1
chr3_4 exon 8549690 8549996 8549690 ID=Msa0488580-mRNA-1:exon:2788;Parent=Msa0488580-mRNA-1
chr3_4 exon 8550228 8550894 8550228 ID=Msa0488580-mRNA-1:exon:2789;Parent=Msa0488580-mRNA-1
chr3_4 exon 8551009 8551132 8551009 ID=Msa0488580-mRNA-1:exon:2790;Parent=Msa0488580-mRNA-1
chr3_4 exon 8551264 8551483 8551264 ID=Msa0488580-mRNA-1:exon:2791;Parent=Msa0488580-mRNA-1
chr3_4 exon 8551952 8552410 8551952 ID=Msa0488580-mRNA-1:exon:2792;Parent=Msa0488580-mRNA-1
chr3_4 exon 8553063 8553610 8553063 ID=Msa0488580-mRNA-1:exon:2793;Parent=Msa0488580-mRNA-1
chr3_4 CDS 8547612 8549253 8547612 ID=Msa0488580-mRNA-1:cds;Parent=Msa0488580-mRNA-1
chr3_4 CDS 8549690 8549996 8549690 ID=Msa0488580-mRNA-1:cds;Parent=Msa0488580-mRNA-1
chr3_4 CDS 8550228 8550894 8550228 ID=Msa0488580-mRNA-1:cds;Parent=Msa0488580-mRNA-1
chr3_4 CDS 8551009 8551132 8551009 ID=Msa0488580-mRNA-1:cds;Parent=Msa0488580-mRNA-1
chr3_4 CDS 8551264 8551483 8551264 ID=Msa0488580-mRNA-1:cds;Parent=Msa0488580-mRNA-1
chr3_4 CDS 8551952 8552410 8551952 ID=Msa0488580-mRNA-1:cds;Parent=Msa0488580-mRNA-1
chr3_4 CDS 8553063 8553285 8553063 ID=Msa0488580-mRNA-1:cds;Parent=Msa0488580-mRNA-1
chr3_4 three_prime_UTR 8553286 8553610 8553286 ID=Msa0488580-mRNA-1:three_prime_utr;Parent=Msa0488580-mRNA-1
Gene Sequence

>Msa0488580

ATGGATTCTAAGAGGCCACTTTTGTTACAATCTCCAAGAACACCAAATGATCAATATATTCCTACAATACCAGTTTTTCCTGAGCTACCAAAATCAAAGTCAAGTTCAAGCAACACAGTAACATTTTCCGGTGTTGAATTCGGTCAGGTTGAGAATAAAAACTCTTCAAACTCATCATCATCAAGCAAAAGTTCTATGTTCATTCATTCAATGGGTTCTAGCAAGAGGAACAATTCTGTGAGGGAAATGAGTAGTTTAAACCATTCAGGATCAAAAAGTACTGTGAGGTATGGTTCAAAAGGTGGTGGTGATTCTGAAGGGTTAACCATGTCACAAAGAGAACTTAGAGATGAAGATGCAAGATTGGTATATATCAATGATCCTGAGAAAACCAATGAGAATTTTGAGTTTTTCGGAAATTCAATTCGAACTGCTAAATACTCAATTCTCACTTTCATTCCAAGGAATTTGTTTGAACAGTTTCATAGAGTTGCTTATATATATTTTCTCATCATTGCTATTCTCAATCAGCTTCCTCAACTTGCAGTATTTGGAAGATATGTTTCGATTCTACCGTTGGCTTTTGTTCTGTTTGTTACTGGTGTGAAAGATGCTTTTGAGGATTGGAGGAGACACAATTCAGATAAAGTTGAGAATAACAGGTTAGCAACAATTTTGATGAATGACGGTAGTTTCATTGAGAAGAAATGGAAGGATATTCGAGTTGGTGAGATTGTAAAAATCAAAACAAATGAAACAATTCCTTGTGACATTGTTTTGCTTTCAACTAGTGATCCAACTGGTGTTGCATATGTGCAAACTATTAATCTTGATGGTGAGAGTAATTTGAAGACTAGGTATGCGAAACAGGAGACAGGTTCAAAAGTTCAACCGAGGTATACTGGTTTGATTAAGTGTGAGAAACCGAATAGGAATATATATGGATTTATGGCGAATATGGAAATCGATGGTAAGAAGTTATCACTTGGATCAACCAACATTGTGCTTAGAGGATGTGAGCTTAAGAATACTAGTTGGGCGCTTGGTGTTGCAGTCTATTGTGGCCGCGAGACTAAAGCTATGCTCAACAATTCAGGAGCTCCATCGAAAAGAAGTAGGCTAGAGACGCGGATGAATTACGAAATCATTATGCTGTCTTTCTTTCTTGTTGCATTGTGTACAATCACGTCTGTTTGTGCTGCGGTTTGGTTGAAGCGTCATAAGGATGAATTGAATCTGTTGCCTTATTATAGGAAACTTGATTTTTCGAAGCCGGAAGTTGAAGACTATAAGTACTATGGATGGGGATTGGAAATCTTTTTCACATTCCTTATGTCAGTTATAGTTTACCAGGTCATGATTCCTATTGCTTTGTACATTTCTATGGAGCTTGTTCGTGTTGGCCAGGCCTATTTCATGATCGAAGACGATCGATTGTATGATGAGGCTACCAATTCAAAGTTTCAGTGCAGAGCTTTGAATATTAATGAAGATTTAGGGCAAATTAAGTATGTGTTCTCAGATAAAACTGGTACACTTACTGAAAATAAGATGGAGTTTCAATGTGCAAGCATACGAGGAGTCGATTACAGTTCCACAAAAACCGGCATGGAGAATGAACTAGGTGACTACTCAGTGCAAGTTGATGGAAAGACCTTAAAACCAAAGATGAAGGTGAAAGTTAATCCAGAGCTTTTGCAATTGGCAAGAAATGGAGTTGAAAATGTGGAAGGAAAAAGGATTTATGATTTCTTTCTAGCACTTGCAACCTGCAATACTATTGTGCCTATTGTTGTCGACACACCTGATCCTGATGTCAAGCTGTTAGATTACCAAGGTGAATCGCCTGATGAACAAGCATTGGCGTATGCCGCTGCTGCCTATGGTTTTATGCTTATCGAACGAACCTCCGGCCACATAGTCATTGATATTCATGGACAAAGACTCAAGTTCAATGTCTTGGGTTTACATGAATTCGACAGTGATAGAAAAAGAATGTCGGTTATACTAGGCTACCCTGACAGTTCAGTAAAACTCTTTGTCAAAGGAGCAGACACAACCATGTTTAGTGTAATAGACAAATCACACAACATGGACGTAATAAAAGCCACAGAAGCTCATCTTCACTCTTACTCTTCCCTAGGTTTAAGAACACTTGTTATTGGAATGAAAGAACTAAGCACTTCAGAGTTTGAAGAATGGCATGCAGCCTATGAAGCGGCAAGCACTACGGTATTTGGTCGGGCTGCAATGCTTAAAAAAATTTCAAACCATGTTGAAAGCAATGTTTCCATATTAGGAGCATCTGCTATTGAAGATAAACTTCAACAAGGCGTGCCGGAAGCAATTGAGTCGCTAAGGGCAGCAGGGATTAAAGTTTGGGTTTTGACTGGTGACAAGCAAGAAACTGCTATATCTATTGGATTTTCATCAAAACTTTTGACAAGAAACATGACTCAAATTATTATTAATAGTAATAGTAAAGTGTCATGTAGAAAAAGTCTCAAAGATGCTCTTGAAAGGTCTAGAAAACTTGATGCAGTTGCAACACAGATAGCTTTGATTATTGATGGTGGAAGCCTTGTACACATACTCGACAGTGAACATGAAGAAGAGTTGTTTCAACTTGCAAGTTTGTGTTCTGTTGTTCTTTGTTGTCGAGTGGCTCCACTACAAAAGGCTGGTATTGTTTCCCTTGTGAAGAAGAGGACATCTGACATGACACTAGCCATCGGAGATGGTGCTAATGATGTATCAATGATTCAAATGGCTGATGTTGGAGTTGGTATAAGTGGACAAGAGGGTAGGCAAGCTGTAATGGCATCAGATTTTGCAATGGGACAATTTAGGTTTTTAGTTCCTCTCTTATTGATACATGGTCACTGGAATTATCAAAGGCTTGGTTACATGATACTATACAATTTCTACAGAAATGCAATCCTTGTTCTTGTCCTATTTTGGTATGTTCTCTACACTGCCTTCACTTCAACAACTGCAATAAATGAATGGAGCTCCACATTGTACTCAATAATCTACAGTGCACTACCAACTATCATTGTTGGAATTCTTGACAAAGATCTTAGTAGAAGCACTCTCCTAAAGTATCCTCAACTTTATAGTGCTGGACAAAGAGATGAAGCCTACAACAAGAAACTGTTTTTGTTAACAATGGTTGATACTTTGTGGCAAAGCATGGTTGTATTTTGGCCTCCACTCTTTGCATATTGGAAAAGTACTATTGATATAGCAAGCATAGGAGATCTTTGGACTCTTGCAGTGGTTATTTTGGTCAATTTACATTTGGCTATGGATGTTGTCAGATGGTATTGGGTGACTCATGCTGTCATTTGGGGATCTATTCTTGCTACATTCATTTCTGTCATGATCATTGATGCTATACCTCAACTTCCTGGCTACTGGGCCTTCTTTCATGTTTCAAGTACTGGACTGTTCTGGGCATTGTTGCTAGGAATTGTGATCACAGCATTGCTTCCACGTTTGGTTGTAAAATATATTTATCAATATTATTTTCCTAGTGATATTCAAATTTCTAGAGAAGCTGAAAAGATGAGAGAATATCAAAGAGTTGCTGAAAATGGTCAAATAGAAATGCTTCCTATCTCATATCATCAACCAAGATAA
Protein sequence

>Msa0488580

MDSKRPLLLQSPRTPNDQYIPTIPVFPELPKSKSSSSNTVTFSGVEFGQVENKNSSNSSSSSKSSMFIHSMGSSKRNNSVREMSSLNHSGSKSTVRYGSKGGGDSEGLTMSQRELRDEDARLVYINDPEKTNENFEFFGNSIRTAKYSILTFIPRNLFEQFHRVAYIYFLIIAILNQLPQLAVFGRYVSILPLAFVLFVTGVKDAFEDWRRHNSDKVENNRLATILMNDGSFIEKKWKDIRVGEIVKIKTNETIPCDIVLLSTSDPTGVAYVQTINLDGESNLKTRYAKQETGSKVQPRYTGLIKCEKPNRNIYGFMANMEIDGKKLSLGSTNIVLRGCELKNTSWALGVAVYCGRETKAMLNNSGAPSKRSRLETRMNYEIIMLSFFLVALCTITSVCAAVWLKRHKDELNLLPYYRKLDFSKPEVEDYKYYGWGLEIFFTFLMSVIVYQVMIPIALYISMELVRVGQAYFMIEDDRLYDEATNSKFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIRGVDYSSTKTGMENELGDYSVQVDGKTLKPKMKVKVNPELLQLARNGVENVEGKRIYDFFLALATCNTIVPIVVDTPDPDVKLLDYQGESPDEQALAYAAAAYGFMLIERTSGHIVIDIHGQRLKFNVLGLHEFDSDRKRMSVILGYPDSSVKLFVKGADTTMFSVIDKSHNMDVIKATEAHLHSYSSLGLRTLVIGMKELSTSEFEEWHAAYEAASTTVFGRAAMLKKISNHVESNVSILGASAIEDKLQQGVPEAIESLRAAGIKVWVLTGDKQETAISIGFSSKLLTRNMTQIIINSNSKVSCRKSLKDALERSRKLDAVATQIALIIDGGSLVHILDSEHEEELFQLASLCSVVLCCRVAPLQKAGIVSLVKKRTSDMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMASDFAMGQFRFLVPLLLIHGHWNYQRLGYMILYNFYRNAILVLVLFWYVLYTAFTSTTAINEWSSTLYSIIYSALPTIIVGILDKDLSRSTLLKYPQLYSAGQRDEAYNKKLFLLTMVDTLWQSMVVFWPPLFAYWKSTIDIASIGDLWTLAVVILVNLHLAMDVVRWYWVTHAVIWGSILATFISVMIIDAIPQLPGYWAFFHVSSTGLFWALLLGIVITALLPRLVVKYIYQYYFPSDIQISREAEKMREYQRVAENGQIEMLPISYHQPR*