AlfalfaGEDB | Msa0488580

M. sativa cultivar zhongmu-4 / Msa0488580

KEGG: K14802
GO: GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008150 GO:0009987 GO:0010876 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0033036 GO:0034204 GO:0042623 GO:0043492 GO:0044464 GO:0045332 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035
PFAM: PF16209.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0488580	XP_003598097.1	98.434	1213	19	0	1	1213	1	1213	0.0	2481

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0488580	sp\|P98204\|ALA1_ARATH	69.496	1131	329	10	73	1197	26	1146	0.0	1662

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0488580	G7J0A6	98.434	1213	19	0	1	1213	1	1213	0.0	2481

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000800	Msa0488580	0.836691	8.067370e-57	-8.615850e-47
Msa0000820	Msa0488580	0.829076	6.301772e-55	-8.615850e-47
Msa0004480	Msa0488580	0.819751	9.851861e-53	-8.615850e-47
Msa0005260	Msa0488580	0.839857	1.233007e-57	-8.615850e-47
Msa0011050	Msa0488580	0.810418	1.164078e-50	-8.615850e-47
Msa0026420	Msa0488580	0.876064	1.878771e-68	-8.615850e-47
Msa0027020	Msa0488580	-0.813363	2.658479e-51	-8.615850e-47
Msa0030050	Msa0488580	0.837231	5.871813e-57	-8.615850e-47
Msa0030800	Msa0488580	0.856431	3.231864e-62	-8.615850e-47
Msa0034540	Msa0488580	0.830575	2.718281e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0488580	MtrunA17_Chr3g0078371	98.434	1213	19	0	1	1213	1	1213	2481
Msa0488580	MtrunA17_Chr8g0355251	76.280	1172	257	6	58	1211	7	1175	1808
Msa0488580	MtrunA17_Chr7g0244991	57.458	1133	425	8	115	1192	137	1267	1309
Msa0488580	MtrunA17_Chr5g0415271	36.696	1120	640	21	121	1189	24	1125	719
Msa0488580	MtrunA17_Chr8g0363911	36.736	1146	642	21	121	1210	44	1162	710
Msa0488580	MtrunA17_Chr4g0062251	36.813	1073	602	16	120	1133	38	1093	686
Msa0488580	MtrunA17_Chr2g0329991	35.091	1157	655	19	120	1199	40	1177	676
Msa0488580	MtrunA17_Chr8g0342811	35.431	1160	647	25	120	1199	40	1177	673
Msa0488580	MtrunA17_Chr8g0368691	35.393	1133	660	18	137	1208	67	1188	671
Msa0488580	MtrunA17_Chr6g0450601	36.460	1130	632	24	120	1178	37	1151	669

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0488580	AT5G04930.1	69.496	1131	329	10	73	1197	26	1146	1662
Msa0488580	AT1G59820.1	35.952	1171	668	23	88	1203	3	1146	718
Msa0488580	AT3G27870.1	36.641	1149	651	20	120	1207	37	1169	712
Msa0488580	AT1G68710.2	36.413	1115	644	19	120	1178	41	1146	699
Msa0488580	AT1G68710.1	36.413	1115	644	19	120	1178	41	1146	699
Msa0488580	AT1G26130.2	35.924	1158	662	21	120	1212	41	1183	694
Msa0488580	AT1G26130.4	35.924	1158	662	21	120	1212	41	1183	694
Msa0488580	AT1G26130.3	35.924	1158	662	21	120	1212	41	1183	694
Msa0488580	AT1G26130.1	35.856	1163	655	21	120	1212	41	1182	693
Msa0488580	AT3G25610.1	37.176	1119	627	21	120	1178	39	1141	692

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Find 216 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATGTCGGTTATACT+AGG	0.468898	3_4:+8550268	Msa0488580:CDS
AAACCGAATAGGAATATATA+TGG	0.343990	3_4:+8548533	Msa0488580:CDS
AAACTCAATCAAAGTTACGT+TGG	0.569503	3_4:+8553590	Msa0488580:three_prime_UTR
AAAGAAGTAGGCTAGAGACG+CGG	0.758343	3_4:+8548720	Msa0488580:CDS
AAAGCTATGCTCAACAATTC+AGG	0.344625	3_4:+8548686	Msa0488580:CDS
AAAGGTGGTGGTGATTCTGA+AGG	0.562096	3_4:+8547909	Msa0488580:CDS
AAAGTTCAACCGAGGTATAC+TGG	0.374044	3_4:+8548494	Msa0488580:CDS
AAATCAAGTTTCCTATAATA+AGG	0.322804	3_4:-8548854	None:intergenic
AAATGGAAGGATATTCGAGT+TGG	0.553978	3_4:+8548317	Msa0488580:CDS
AACAAGTGTTCTTAAACCTA+GGG	0.551707	3_4:-8550416	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGAGTAGTTTAAACCATTC+AGG	+	chr3_4:8547858-8547877	Msa0488580:CDS	30.0%
AACTGTTCAAACAAATTCCT+TGG	-	chr3_4:8548074-8548093	None:intergenic	30.0%
CAGATAAAGTTGAGAATAAC+AGG	+	chr3_4:8548252-8548271	Msa0488580:CDS	30.0%
GTAGTTTCATTGAGAAGAAA+TGG	+	chr3_4:8548300-8548319	Msa0488580:CDS	30.0%
TTTCATTGAGAAGAAATGGA+AGG	+	chr3_4:8548304-8548323	Msa0488580:CDS	30.0%
GTGCAAACTATTAATCTTGA+TGG	+	chr3_4:8548425-8548444	Msa0488580:CDS	30.0%
TTAATCAAACCAGTATACCT+CGG	-	chr3_4:8548506-8548525	None:intergenic	30.0%
ATATGGATTTATGGCGAATA+TGG	+	chr3_4:8548550-8548569	Msa0488580:CDS	30.0%
TGAGCTTAAGAATACTAGTT+GGG	+	chr3_4:8548628-8548647	Msa0488580:CDS	30.0%
TACTTATAGTCTTCAACTTC+CGG	-	chr3_4:8548887-8548906	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	8547612	8553610	8547612	ID=Msa0488580;Name=Msa0488580
chr3_4	mRNA	8547612	8553610	8547612	ID=Msa0488580-mRNA-1;Parent=Msa0488580;Name=Msa0488580-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|1\|0.85\|1\|1\|1\|7\|325\|1213
chr3_4	exon	8547612	8549253	8547612	ID=Msa0488580-mRNA-1:exon:2787;Parent=Msa0488580-mRNA-1
chr3_4	exon	8549690	8549996	8549690	ID=Msa0488580-mRNA-1:exon:2788;Parent=Msa0488580-mRNA-1
chr3_4	exon	8550228	8550894	8550228	ID=Msa0488580-mRNA-1:exon:2789;Parent=Msa0488580-mRNA-1
chr3_4	exon	8551009	8551132	8551009	ID=Msa0488580-mRNA-1:exon:2790;Parent=Msa0488580-mRNA-1
chr3_4	exon	8551264	8551483	8551264	ID=Msa0488580-mRNA-1:exon:2791;Parent=Msa0488580-mRNA-1
chr3_4	exon	8551952	8552410	8551952	ID=Msa0488580-mRNA-1:exon:2792;Parent=Msa0488580-mRNA-1
chr3_4	exon	8553063	8553610	8553063	ID=Msa0488580-mRNA-1:exon:2793;Parent=Msa0488580-mRNA-1
chr3_4	CDS	8547612	8549253	8547612	ID=Msa0488580-mRNA-1:cds;Parent=Msa0488580-mRNA-1
chr3_4	CDS	8549690	8549996	8549690	ID=Msa0488580-mRNA-1:cds;Parent=Msa0488580-mRNA-1
chr3_4	CDS	8550228	8550894	8550228	ID=Msa0488580-mRNA-1:cds;Parent=Msa0488580-mRNA-1
chr3_4	CDS	8551009	8551132	8551009	ID=Msa0488580-mRNA-1:cds;Parent=Msa0488580-mRNA-1
chr3_4	CDS	8551264	8551483	8551264	ID=Msa0488580-mRNA-1:cds;Parent=Msa0488580-mRNA-1
chr3_4	CDS	8551952	8552410	8551952	ID=Msa0488580-mRNA-1:cds;Parent=Msa0488580-mRNA-1
chr3_4	CDS	8553063	8553285	8553063	ID=Msa0488580-mRNA-1:cds;Parent=Msa0488580-mRNA-1
chr3_4	three_prime_UTR	8553286	8553610	8553286	ID=Msa0488580-mRNA-1:three_prime_utr;Parent=Msa0488580-mRNA-1

Gene Sequence

>Msa0488580

ATGGATTCTAAGAGGCCACTTTTGTTACAATCTCCAAGAACACCAAATGATCAATATATTCCTACAATACCAGTTTTTCCTGAGCTACCAAAATCAAAGTCAAGTTCAAGCAACACAGTAACATTTTCCGGTGTTGAATTCGGTCAGGTTGAGAATAAAAACTCTTCAAACTCATCATCATCAAGCAAAAGTTCTATGTTCATTCATTCAATGGGTTCTAGCAAGAGGAACAATTCTGTGAGGGAAATGAGTAGTTTAAACCATTCAGGATCAAAAAGTACTGTGAGGTATGGTTCAAAAGGTGGTGGTGATTCTGAAGGGTTAACCATGTCACAAAGAGAACTTAGAGATGAAGATGCAAGATTGGTATATATCAATGATCCTGAGAAAACCAATGAGAATTTTGAGTTTTTCGGAAATTCAATTCGAACTGCTAAATACTCAATTCTCACTTTCATTCCAAGGAATTTGTTTGAACAGTTTCATAGAGTTGCTTATATATATTTTCTCATCATTGCTATTCTCAATCAGCTTCCTCAACTTGCAGTATTTGGAAGATATGTTTCGATTCTACCGTTGGCTTTTGTTCTGTTTGTTACTGGTGTGAAAGATGCTTTTGAGGATTGGAGGAGACACAATTCAGATAAAGTTGAGAATAACAGGTTAGCAACAATTTTGATGAATGACGGTAGTTTCATTGAGAAGAAATGGAAGGATATTCGAGTTGGTGAGATTGTAAAAATCAAAACAAATGAAACAATTCCTTGTGACATTGTTTTGCTTTCAACTAGTGATCCAACTGGTGTTGCATATGTGCAAACTATTAATCTTGATGGTGAGAGTAATTTGAAGACTAGGTATGCGAAACAGGAGACAGGTTCAAAAGTTCAACCGAGGTATACTGGTTTGATTAAGTGTGAGAAACCGAATAGGAATATATATGGATTTATGGCGAATATGGAAATCGATGGTAAGAAGTTATCACTTGGATCAACCAACATTGTGCTTAGAGGATGTGAGCTTAAGAATACTAGTTGGGCGCTTGGTGTTGCAGTCTATTGTGGCCGCGAGACTAAAGCTATGCTCAACAATTCAGGAGCTCCATCGAAAAGAAGTAGGCTAGAGACGCGGATGAATTACGAAATCATTATGCTGTCTTTCTTTCTTGTTGCATTGTGTACAATCACGTCTGTTTGTGCTGCGGTTTGGTTGAAGCGTCATAAGGATGAATTGAATCTGTTGCCTTATTATAGGAAACTTGATTTTTCGAAGCCGGAAGTTGAAGACTATAAGTACTATGGATGGGGATTGGAAATCTTTTTCACATTCCTTATGTCAGTTATAGTTTACCAGGTCATGATTCCTATTGCTTTGTACATTTCTATGGAGCTTGTTCGTGTTGGCCAGGCCTATTTCATGATCGAAGACGATCGATTGTATGATGAGGCTACCAATTCAAAGTTTCAGTGCAGAGCTTTGAATATTAATGAAGATTTAGGGCAAATTAAGTATGTGTTCTCAGATAAAACTGGTACACTTACTGAAAATAAGATGGAGTTTCAATGTGCAAGCATACGAGGAGTCGATTACAGTTCCACAAAAACCGGCATGGAGAATGAACTAGGTGACTACTCAGTGCAAGTTGATGGAAAGACCTTAAAACCAAAGATGAAGGTGAAAGTTAATCCAGAGCTTTTGCAATTGGCAAGAAATGGAGTTGAAAATGTGGAAGGAAAAAGGATTTATGATTTCTTTCTAGCACTTGCAACCTGCAATACTATTGTGCCTATTGTTGTCGACACACCTGATCCTGATGTCAAGCTGTTAGATTACCAAGGTGAATCGCCTGATGAACAAGCATTGGCGTATGCCGCTGCTGCCTATGGTTTTATGCTTATCGAACGAACCTCCGGCCACATAGTCATTGATATTCATGGACAAAGACTCAAGTTCAATGTCTTGGGTTTACATGAATTCGACAGTGATAGAAAAAGAATGTCGGTTATACTAGGCTACCCTGACAGTTCAGTAAAACTCTTTGTCAAAGGAGCAGACACAACCATGTTTAGTGTAATAGACAAATCACACAACATGGACGTAATAAAAGCCACAGAAGCTCATCTTCACTCTTACTCTTCCCTAGGTTTAAGAACACTTGTTATTGGAATGAAAGAACTAAGCACTTCAGAGTTTGAAGAATGGCATGCAGCCTATGAAGCGGCAAGCACTACGGTATTTGGTCGGGCTGCAATGCTTAAAAAAATTTCAAACCATGTTGAAAGCAATGTTTCCATATTAGGAGCATCTGCTATTGAAGATAAACTTCAACAAGGCGTGCCGGAAGCAATTGAGTCGCTAAGGGCAGCAGGGATTAAAGTTTGGGTTTTGACTGGTGACAAGCAAGAAACTGCTATATCTATTGGATTTTCATCAAAACTTTTGACAAGAAACATGACTCAAATTATTATTAATAGTAATAGTAAAGTGTCATGTAGAAAAAGTCTCAAAGATGCTCTTGAAAGGTCTAGAAAACTTGATGCAGTTGCAACACAGATAGCTTTGATTATTGATGGTGGAAGCCTTGTACACATACTCGACAGTGAACATGAAGAAGAGTTGTTTCAACTTGCAAGTTTGTGTTCTGTTGTTCTTTGTTGTCGAGTGGCTCCACTACAAAAGGCTGGTATTGTTTCCCTTGTGAAGAAGAGGACATCTGACATGACACTAGCCATCGGAGATGGTGCTAATGATGTATCAATGATTCAAATGGCTGATGTTGGAGTTGGTATAAGTGGACAAGAGGGTAGGCAAGCTGTAATGGCATCAGATTTTGCAATGGGACAATTTAGGTTTTTAGTTCCTCTCTTATTGATACATGGTCACTGGAATTATCAAAGGCTTGGTTACATGATACTATACAATTTCTACAGAAATGCAATCCTTGTTCTTGTCCTATTTTGGTATGTTCTCTACACTGCCTTCACTTCAACAACTGCAATAAATGAATGGAGCTCCACATTGTACTCAATAATCTACAGTGCACTACCAACTATCATTGTTGGAATTCTTGACAAAGATCTTAGTAGAAGCACTCTCCTAAAGTATCCTCAACTTTATAGTGCTGGACAAAGAGATGAAGCCTACAACAAGAAACTGTTTTTGTTAACAATGGTTGATACTTTGTGGCAAAGCATGGTTGTATTTTGGCCTCCACTCTTTGCATATTGGAAAAGTACTATTGATATAGCAAGCATAGGAGATCTTTGGACTCTTGCAGTGGTTATTTTGGTCAATTTACATTTGGCTATGGATGTTGTCAGATGGTATTGGGTGACTCATGCTGTCATTTGGGGATCTATTCTTGCTACATTCATTTCTGTCATGATCATTGATGCTATACCTCAACTTCCTGGCTACTGGGCCTTCTTTCATGTTTCAAGTACTGGACTGTTCTGGGCATTGTTGCTAGGAATTGTGATCACAGCATTGCTTCCACGTTTGGTTGTAAAATATATTTATCAATATTATTTTCCTAGTGATATTCAAATTTCTAGAGAAGCTGAAAAGATGAGAGAATATCAAAGAGTTGCTGAAAATGGTCAAATAGAAATGCTTCCTATCTCATATCATCAACCAAGATAA

Protein sequence

>Msa0488580

MDSKRPLLLQSPRTPNDQYIPTIPVFPELPKSKSSSSNTVTFSGVEFGQVENKNSSNSSSSSKSSMFIHSMGSSKRNNSVREMSSLNHSGSKSTVRYGSKGGGDSEGLTMSQRELRDEDARLVYINDPEKTNENFEFFGNSIRTAKYSILTFIPRNLFEQFHRVAYIYFLIIAILNQLPQLAVFGRYVSILPLAFVLFVTGVKDAFEDWRRHNSDKVENNRLATILMNDGSFIEKKWKDIRVGEIVKIKTNETIPCDIVLLSTSDPTGVAYVQTINLDGESNLKTRYAKQETGSKVQPRYTGLIKCEKPNRNIYGFMANMEIDGKKLSLGSTNIVLRGCELKNTSWALGVAVYCGRETKAMLNNSGAPSKRSRLETRMNYEIIMLSFFLVALCTITSVCAAVWLKRHKDELNLLPYYRKLDFSKPEVEDYKYYGWGLEIFFTFLMSVIVYQVMIPIALYISMELVRVGQAYFMIEDDRLYDEATNSKFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIRGVDYSSTKTGMENELGDYSVQVDGKTLKPKMKVKVNPELLQLARNGVENVEGKRIYDFFLALATCNTIVPIVVDTPDPDVKLLDYQGESPDEQALAYAAAAYGFMLIERTSGHIVIDIHGQRLKFNVLGLHEFDSDRKRMSVILGYPDSSVKLFVKGADTTMFSVIDKSHNMDVIKATEAHLHSYSSLGLRTLVIGMKELSTSEFEEWHAAYEAASTTVFGRAAMLKKISNHVESNVSILGASAIEDKLQQGVPEAIESLRAAGIKVWVLTGDKQETAISIGFSSKLLTRNMTQIIINSNSKVSCRKSLKDALERSRKLDAVATQIALIIDGGSLVHILDSEHEEELFQLASLCSVVLCCRVAPLQKAGIVSLVKKRTSDMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMASDFAMGQFRFLVPLLLIHGHWNYQRLGYMILYNFYRNAILVLVLFWYVLYTAFTSTTAINEWSSTLYSIIYSALPTIIVGILDKDLSRSTLLKYPQLYSAGQRDEAYNKKLFLLTMVDTLWQSMVVFWPPLFAYWKSTIDIASIGDLWTLAVVILVNLHLAMDVVRWYWVTHAVIWGSILATFISVMIIDAIPQLPGYWAFFHVSSTGLFWALLLGIVITALLPRLVVKYIYQYYFPSDIQISREAEKMREYQRVAENGQIEMLPISYHQPR*