Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0147790 | sp|Q9SGS5|Y1607_ARATH | 32.601 | 273 | 122 | 10 | 15 | 249 | 24 | 272 | 4.55e-27 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0147790 | G7I8D2 | 90.909 | 253 | 17 | 2 | 1 | 253 | 1 | 247 | 1.85e-157 | 446 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004480 | Msa0147790 | 0.921438 | 3.577003e-88 | -8.615850e-47 |
| Msa0011050 | Msa0147790 | 0.803565 | 3.280768e-49 | -8.615850e-47 |
| Msa0043850 | Msa0147790 | 0.806270 | 8.925079e-50 | -8.615850e-47 |
| Msa0052780 | Msa0147790 | 0.815405 | 9.402321e-52 | -8.615850e-47 |
| Msa0087550 | Msa0147790 | 0.826640 | 2.427987e-54 | -8.615850e-47 |
| Msa0097570 | Msa0147790 | 0.817156 | 3.816393e-52 | -8.615850e-47 |
| Msa0104760 | Msa0147790 | 0.824415 | 8.174350e-54 | -8.615850e-47 |
| Msa0104810 | Msa0147790 | 0.808870 | 2.503705e-50 | -8.615850e-47 |
| Msa0129640 | Msa0147790 | 0.815587 | 8.563557e-52 | -8.615850e-47 |
| Msa0134270 | Msa0147790 | 0.819449 | 1.154582e-52 | -8.615850e-47 |
| Msa0137980 | Msa0147790 | 0.819024 | 1.443212e-52 | -8.615850e-47 |
| Msa0145430 | Msa0147790 | 0.801602 | 8.333971e-49 | -8.615850e-47 |
| Msa0147790 | Msa0151220 | 0.848209 | 7.092126e-60 | -8.615850e-47 |
| Msa0147790 | Msa0182020 | 0.806536 | 7.841656e-50 | -8.615850e-47 |
| Msa0147790 | Msa0193970 | 0.802329 | 5.907341e-49 | -8.615850e-47 |
| Msa0147790 | Msa0212710 | 0.851845 | 6.805550e-61 | -8.615850e-47 |
| Msa0147790 | Msa0223140 | 0.849753 | 2.640424e-60 | -8.615850e-47 |
| Msa0147790 | Msa0235840 | 0.846470 | 2.128161e-59 | -8.615850e-47 |
| Msa0147790 | Msa0238710 | 0.843187 | 1.634526e-58 | -8.615850e-47 |
| Msa0147790 | Msa0246140 | 0.802577 | 5.251174e-49 | -8.615850e-47 |
| Msa0147790 | Msa0254640 | 0.818649 | 1.755998e-52 | -8.615850e-47 |
| Msa0147790 | Msa0259440 | 0.822191 | 2.702719e-53 | -8.615850e-47 |
| Msa0147790 | Msa0259580 | 0.817357 | 3.439170e-52 | -8.615850e-47 |
| Msa0147790 | Msa0262360 | 0.837246 | 5.819298e-57 | -8.615850e-47 |
| Msa0147790 | Msa0264500 | 0.829447 | 5.122819e-55 | -8.615850e-47 |
| Msa0147790 | Msa0264680 | 0.803899 | 2.797384e-49 | -8.615850e-47 |
| Msa0147790 | Msa0265480 | 0.802464 | 5.540977e-49 | -8.615850e-47 |
| Msa0147790 | Msa0266220 | 0.847068 | 1.461127e-59 | -8.615850e-47 |
| Msa0147790 | Msa0276430 | 0.810459 | 1.140554e-50 | -8.615850e-47 |
| Msa0147790 | Msa0287680 | 0.828425 | 9.056401e-55 | -8.615850e-47 |
| Msa0147790 | Msa0300140 | 0.844220 | 8.650979e-59 | -8.615850e-47 |
| Msa0147790 | Msa0302510 | 0.808781 | 2.615726e-50 | -8.615850e-47 |
| Msa0147790 | Msa0306310 | 0.813231 | 2.841889e-51 | -8.615850e-47 |
| Msa0147790 | Msa0307350 | 0.806991 | 6.286865e-50 | -8.615850e-47 |
| Msa0147790 | Msa0316470 | 0.852651 | 4.013710e-61 | -8.615850e-47 |
| Msa0147790 | Msa0319680 | 0.807789 | 4.258093e-50 | -8.615850e-47 |
| Msa0147790 | Msa0332360 | 0.841014 | 6.143631e-58 | -8.615850e-47 |
| Msa0147790 | Msa0339720 | 0.850662 | 1.469372e-60 | -8.615850e-47 |
| Msa0147790 | Msa0351050 | 0.829184 | 5.933066e-55 | -8.615850e-47 |
| Msa0147790 | Msa0374290 | 0.805133 | 1.546329e-49 | -8.615850e-47 |
| Msa0147790 | Msa0390790 | 0.801975 | 6.985440e-49 | -8.615850e-47 |
| Msa0147790 | Msa0393100 | 0.812491 | 4.127164e-51 | -8.615850e-47 |
| Msa0147790 | Msa0402800 | 0.833505 | 5.131672e-56 | -8.615850e-47 |
| Msa0147790 | Msa0456770 | 0.814917 | 1.206757e-51 | -8.615850e-47 |
| Msa0147790 | Msa0459640 | 0.801379 | 9.259073e-49 | -8.615850e-47 |
| Msa0147790 | Msa0481740 | 0.800704 | 1.271744e-48 | -8.615850e-47 |
| Msa0147790 | Msa0481770 | 0.824261 | 8.883483e-54 | -8.615850e-47 |
| Msa0147790 | Msa0488580 | 0.826711 | 2.334905e-54 | -8.615850e-47 |
| Msa0147790 | Msa0497860 | 0.813908 | 2.017388e-51 | -8.615850e-47 |
| Msa0147790 | Msa0515540 | 0.804697 | 1.907765e-49 | -8.615850e-47 |
| Msa0147790 | Msa0515590 | 0.801706 | 7.932095e-49 | -8.615850e-47 |
| Msa0147790 | Msa0549140 | 0.816866 | 4.433740e-52 | -8.615850e-47 |
| Msa0147790 | Msa0560280 | 0.810664 | 1.029954e-50 | -8.615850e-47 |
| Msa0147790 | Msa0561360 | 0.823870 | 1.097193e-53 | -8.615850e-47 |
| Msa0147790 | Msa0584580 | 0.822142 | 2.774817e-53 | -8.615850e-47 |
| Msa0147790 | Msa0584600 | 0.807459 | 5.003804e-50 | -8.615850e-47 |
| Msa0147790 | Msa0604570 | 0.800397 | 1.468939e-48 | -8.615850e-47 |
| Msa0147790 | Msa0614290 | 0.819503 | 1.122333e-52 | -8.615850e-47 |
| Msa0147790 | Msa0638810 | 0.815506 | 8.925890e-52 | -8.615850e-47 |
| Msa0147790 | Msa0693750 | 0.810301 | 1.234021e-50 | -8.615850e-47 |
| Msa0147790 | Msa0697510 | 0.811688 | 6.178693e-51 | -8.615850e-47 |
| Msa0147790 | Msa0697520 | 0.805225 | 1.479578e-49 | -8.615850e-47 |
| Msa0147790 | Msa0698450 | 0.808131 | 3.600109e-50 | -8.615850e-47 |
| Msa0147790 | Msa0698460 | 0.803659 | 3.136913e-49 | -8.615850e-47 |
| Msa0147790 | Msa0713060 | 0.848110 | 7.553602e-60 | -8.615850e-47 |
| Msa0147790 | Msa0729350 | 0.873064 | 1.964113e-67 | -8.615850e-47 |
| Msa0147790 | Msa0737430 | 0.857671 | 1.392844e-62 | -8.615850e-47 |
| Msa0147790 | Msa0769720 | 0.823482 | 1.352987e-53 | -8.615850e-47 |
| Msa0147790 | Msa0772490 | 0.834164 | 3.510924e-56 | -8.615850e-47 |
| Msa0147790 | Msa0807670 | 0.802363 | 5.814377e-49 | -8.615850e-47 |
| Msa0147790 | Msa0807680 | 0.805098 | 1.572681e-49 | -8.615850e-47 |
| Msa0147790 | Msa0810440 | 0.822426 | 2.384354e-53 | -8.615850e-47 |
| Msa0147790 | Msa0816630 | 0.893001 | 9.430812e-75 | -8.615850e-47 |
| Msa0147790 | Msa0817710 | 0.822481 | 2.315470e-53 | -8.615850e-47 |
| Msa0147790 | Msa0826380 | 0.810241 | 1.271378e-50 | -8.615850e-47 |
| Msa0147790 | Msa0826450 | 0.806808 | 6.870814e-50 | -8.615850e-47 |
| Msa0147790 | Msa0863940 | 0.873678 | 1.221102e-67 | -8.615850e-47 |
| Msa0147790 | Msa0876790 | 0.801761 | 7.731660e-49 | -8.615850e-47 |
| Msa0147790 | Msa0968050 | 0.814633 | 1.394647e-51 | -8.615850e-47 |
| Msa0147790 | Msa1016960 | 0.807338 | 5.308122e-50 | -8.615850e-47 |
| Msa0147790 | Msa1025750 | 0.835549 | 1.573098e-56 | -8.615850e-47 |
| Msa0147790 | Msa1026080 | 0.803692 | 3.087673e-49 | -8.615850e-47 |
| Msa0147790 | Msa1031460 | 0.811480 | 6.855164e-51 | -8.615850e-47 |
| Msa0147790 | Msa1064510 | 0.828836 | 7.205924e-55 | -8.615850e-47 |
| Msa0147790 | Msa1068380 | 0.876619 | 1.209312e-68 | -8.615850e-47 |
| Msa0147790 | Msa1070540 | 0.816696 | 4.840068e-52 | -8.615850e-47 |
| Msa0147790 | Msa1075500 | 0.808975 | 2.377751e-50 | -8.615850e-47 |
| Msa0147790 | Msa1080650 | 0.802792 | 4.741417e-49 | -8.615850e-47 |
| Msa0147790 | Msa1082600 | 0.808974 | 2.378854e-50 | -8.615850e-47 |
| Msa0147790 | Msa1101240 | 0.817063 | 4.005018e-52 | -8.615850e-47 |
| Msa0147790 | Msa1109670 | 0.808350 | 3.233667e-50 | -8.615850e-47 |
| Msa0147790 | Msa1113100 | 0.835451 | 1.664901e-56 | -8.615850e-47 |
| Msa0147790 | Msa1121300 | 0.868659 | 5.541603e-66 | -8.615850e-47 |
| Msa0147790 | Msa1126440 | 0.801069 | 1.071339e-48 | -8.615850e-47 |
| Msa0147790 | Msa1127360 | 0.830107 | 3.538393e-55 | -8.615850e-47 |
| Msa0147790 | Msa1153230 | 0.803976 | 2.695953e-49 | -8.615850e-47 |
| Msa0147790 | Msa1156490 | 0.862662 | 4.323874e-64 | -8.615850e-47 |
| Msa0147790 | Msa1165430 | 0.823884 | 1.089257e-53 | -8.615850e-47 |
| Msa0147790 | Msa1173150 | 0.820600 | 6.295828e-53 | -8.615850e-47 |
| Msa0147790 | Msa1199870 | 0.851597 | 8.000812e-61 | -8.615850e-47 |
| Msa0147790 | Msa1212470 | 0.886091 | 4.622655e-72 | -8.615850e-47 |
| Msa0147790 | Msa1217260 | 0.824260 | 8.887549e-54 | -8.615850e-47 |
| Msa0147790 | Msa1218160 | 0.835502 | 1.616923e-56 | -8.615850e-47 |
| Msa0147790 | Msa1221220 | 0.843058 | 1.769833e-58 | -8.615850e-47 |
| Msa0147790 | Msa1225580 | 0.805278 | 1.441786e-49 | -8.615850e-47 |
| Msa0147790 | Msa1238680 | 0.809227 | 2.099715e-50 | -8.615850e-47 |
| Msa0147790 | Msa1252000 | 0.811119 | 8.211989e-51 | -8.615850e-47 |
| Msa0147790 | Msa1252810 | 0.846446 | 2.161443e-59 | -8.615850e-47 |
| Msa0147790 | Msa1299780 | 0.877647 | 5.312141e-69 | -8.615850e-47 |
| Msa0147790 | Msa1329900 | 0.884196 | 2.358101e-71 | -8.615850e-47 |
| Msa0147790 | Msa1344330 | 0.821389 | 4.143126e-53 | -8.615850e-47 |
| Msa0147790 | Msa1349830 | 0.824685 | 7.060113e-54 | -8.615850e-47 |
| Msa0147790 | Msa1350700 | 0.849839 | 2.499009e-60 | -8.615850e-47 |
| Msa0147790 | Msa1355510 | 0.805649 | 1.205779e-49 | -8.615850e-47 |
| Msa0147790 | Msa1360260 | 0.850127 | 2.075107e-60 | -8.615850e-47 |
| Msa0147790 | Msa1369320 | 0.818303 | 2.103600e-52 | -8.615850e-47 |
| Msa0147790 | Msa1379020 | 0.803695 | 3.083412e-49 | -8.615850e-47 |
| Msa0147790 | Msa1401110 | 0.814891 | 1.222807e-51 | -8.615850e-47 |
| Msa0147790 | Msa1403690 | 0.826468 | 2.668264e-54 | -8.615850e-47 |
| Msa0147790 | Msa1412410 | 0.820409 | 6.965007e-53 | -8.615850e-47 |
| Msa0147790 | Msa1422230 | 0.824500 | 7.806516e-54 | -8.615850e-47 |
| Msa0147790 | Msa1427860 | 0.815100 | 1.099027e-51 | -8.615850e-47 |
| Msa0147790 | Msa1435320 | 0.808887 | 2.482982e-50 | -8.615850e-47 |
| Msa0147790 | Msa1443400 | 0.805624 | 1.220133e-49 | -8.615850e-47 |
| Msa0147790 | Msa1448040 | 0.805947 | 1.043901e-49 | -8.615850e-47 |
| Msa0147790 | Msa1453600 | 0.832886 | 7.318624e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0147790 | MtrunA17_Chr1g0157191 | 90.909 | 253 | 17 | 2 | 1 | 253 | 1 | 247 | 3.56e-161 | 446 |
| Msa0147790 | MtrunA17_Chr3g0143431 | 48.289 | 263 | 99 | 11 | 4 | 249 | 2 | 244 | 1.10e-59 | 189 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0147790 | AT1G76070.1 | 32.601 | 273 | 122 | 10 | 15 | 249 | 24 | 272 | 4.63e-28 | 108 |
| Msa0147790 | AT1G20310.1 | 33.948 | 271 | 121 | 11 | 1 | 246 | 1 | 238 | 2.56e-27 | 105 |
Find 60 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAGATCTTTGTTGGGTTT+TGG | 0.239142 | 1_4:-7816004 | None:intergenic |
| TCCCTTTGATCAATTTCTTC+AGG | 0.304197 | 1_4:-7816247 | None:intergenic |
| TTCACCAAAGATTTCTTGTA+TGG | 0.307383 | 1_4:+7815949 | Msa0147790:CDS |
| TCATTGCCACCACCATCTTT+AGG | 0.317528 | 1_4:-7815911 | None:intergenic |
| CCTAAAATAGGTGCAGAAAA+TGG | 0.326900 | 1_4:-7816307 | None:intergenic |
| TTTCCACCAACACCTAAAAT+AGG | 0.335034 | 1_4:-7816319 | None:intergenic |
| CTAAATTTGTGATCTCTTCC+TGG | 0.339147 | 1_4:-7815785 | None:intergenic |
| GAAAGGAAATCAGATGGTTC+TGG | 0.386986 | 1_4:+7816118 | Msa0147790:CDS |
| CAAGAAATCTTTGGTGAAGT+AGG | 0.393822 | 1_4:-7815944 | None:intergenic |
| CAAGGAATGAGATTAATCTT+TGG | 0.407911 | 1_4:+7816380 | Msa0147790:CDS |
| TTAGGTGTTGGTGGAAATAG+TGG | 0.423953 | 1_4:+7816325 | Msa0147790:CDS |
| TGTCCCATACAAGAAATCTT+TGG | 0.426848 | 1_4:-7815953 | None:intergenic |
| GCCTGAAGAAATTGATCAAA+GGG | 0.432040 | 1_4:+7816246 | Msa0147790:CDS |
| GGAAGTGGAGAGATCTTTGT+TGG | 0.438028 | 1_4:-7816011 | None:intergenic |
| CAAAGATTAATCTCATTCCT+TGG | 0.442885 | 1_4:-7816379 | None:intergenic |
| CAAAACGCTCCTTTCAGTCC+AGG | 0.469371 | 1_4:+7815767 | Msa0147790:CDS |
| AGAAAATAACACAAAGTCAT+GGG | 0.481776 | 1_4:+7815811 | Msa0147790:CDS |
| GGTTCTGGATTTGTTGATGA+AGG | 0.482613 | 1_4:+7816133 | Msa0147790:CDS |
| ATCCACCTTTGCAGTGGATA+CGG | 0.483673 | 1_4:-7816032 | None:intergenic |
| CAAAGGGATTGCTTTACTGA+TGG | 0.491176 | 1_4:+7816262 | Msa0147790:CDS |
| ATCCACTGCAAAGGTGGATA+CGG | 0.496075 | 1_4:+7816036 | Msa0147790:CDS |
| CACCGCCGATGGGTGATATG+AGG | 0.497283 | 1_4:+7816167 | Msa0147790:CDS |
| GGATTCAACTGAAGAGGCCT+AGG | 0.502469 | 1_4:-7816424 | None:intergenic |
| ATTTATTTAGCTTTAAGCAC+AGG | 0.503675 | 1_4:-7816445 | None:intergenic |
| AAAACTCATGCTACTGGTAA+GGG | 0.508213 | 1_4:+7815839 | Msa0147790:CDS |
| CTTTGCAGTGGATACGGAAG+TGG | 0.509471 | 1_4:-7816026 | None:intergenic |
| CTGATTTGAAGTTTAAGCCA+AGG | 0.518893 | 1_4:+7816362 | Msa0147790:CDS |
| TGATCTCTTCCTGGACTGAA+AGG | 0.521071 | 1_4:-7815776 | None:intergenic |
| CAGAAAATAACACAAAGTCA+TGG | 0.527453 | 1_4:+7815810 | Msa0147790:CDS |
| TTCCGTATCCACTGCAAAGG+TGG | 0.529241 | 1_4:+7816030 | Msa0147790:CDS |
| AAGAGAAACAAAGTAAGCTA+AGG | 0.530956 | 1_4:+7815711 | Msa0147790:CDS |
| GCTAGAAGAAAACCTAAAGA+TGG | 0.536495 | 1_4:+7815899 | Msa0147790:CDS |
| AGCCTGAAGAAATTGATCAA+AGG | 0.541841 | 1_4:+7816245 | Msa0147790:CDS |
| CTCCGTATCCACCTTTGCAG+TGG | 0.542229 | 1_4:-7816038 | None:intergenic |
| GAAGTGGAGAGATCTTTGTT+GGG | 0.548264 | 1_4:-7816010 | None:intergenic |
| TAAAGAGATCGAAGTTTCAG+AGG | 0.548970 | 1_4:+7816062 | Msa0147790:CDS |
| AACAACAAAGCACCGCCGAT+GGG | 0.567253 | 1_4:+7816157 | Msa0147790:CDS |
| AGCACAGGATTCAACTGAAG+AGG | 0.568748 | 1_4:-7816430 | None:intergenic |
| TCACCAAAGATTTCTTGTAT+GGG | 0.570550 | 1_4:+7815950 | Msa0147790:CDS |
| GTTCTGGATTTGTTGATGAA+GGG | 0.581024 | 1_4:+7816134 | Msa0147790:CDS |
| AGAAAACCTAAAGATGGTGG+TGG | 0.587690 | 1_4:+7815905 | Msa0147790:CDS |
| TATGGAATCATAGTAACCAT+AGG | 0.589627 | 1_4:-7815872 | None:intergenic |
| GAACAACAAAGCACCGCCGA+TGG | 0.591209 | 1_4:+7816156 | Msa0147790:CDS |
| GAGATTTGCAAGTGGACGTG+AGG | 0.598149 | 1_4:+7816189 | Msa0147790:CDS |
| TTTGCGGAAAGGAAATCAGA+TGG | 0.598533 | 1_4:+7816112 | Msa0147790:CDS |
| TTGCTTTACTGATGGAGAGG+AGG | 0.603818 | 1_4:+7816270 | Msa0147790:CDS |
| GAGGTCTAGAGCGAAATTTG+CGG | 0.609500 | 1_4:+7816096 | Msa0147790:CDS |
| GGATTGCTTTACTGATGGAG+AGG | 0.611817 | 1_4:+7816267 | Msa0147790:CDS |
| CTAGAGCGAAATTTGCGGAA+AGG | 0.612185 | 1_4:+7816101 | Msa0147790:CDS |
| CACTTCCGTATCCACTGCAA+AGG | 0.621209 | 1_4:+7816027 | Msa0147790:CDS |
| GAAGAACAATGGCTCCACCT+AGG | 0.627085 | 1_4:+7816407 | Msa0147790:CDS |
| TTCAACTGAAGAGGCCTAGG+TGG | 0.634353 | 1_4:-7816421 | None:intergenic |
| AGAAGAAAACCTAAAGATGG+TGG | 0.634473 | 1_4:+7815902 | Msa0147790:CDS |
| TCTTTGGAAGAGAAGAACAA+TGG | 0.638654 | 1_4:+7816396 | Msa0147790:CDS |
| AATCTCCTCATATCACCCAT+CGG | 0.643282 | 1_4:-7816172 | None:intergenic |
| GAAAATAACACAAAGTCATG+GGG | 0.645047 | 1_4:+7815812 | Msa0147790:CDS |
| CACTGCAAAGGTGGATACGG+AGG | 0.656333 | 1_4:+7816039 | Msa0147790:CDS |
| AAATAGTGGTACATCTAATG+TGG | 0.671533 | 1_4:+7816339 | Msa0147790:CDS |
| CTCCTCATATCACCCATCGG+CGG | 0.680805 | 1_4:-7816169 | None:intergenic |
| GATATGAGGAGATTTGCAAG+TGG | 0.723470 | 1_4:+7816181 | Msa0147790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTCTAAATTTGATTGGA+AGG | + | chr1_4:7816213-7816232 | Msa0147790:CDS | 20.0% |
| !!! | TTTTTCTAAATTTGATTGGA+AGG | + | chr1_4:7816213-7816232 | Msa0147790:CDS | 20.0% |
| ! | AGAAAATAACACAAAGTCAT+GGG | + | chr1_4:7815811-7815830 | Msa0147790:CDS | 25.0% |
| !!! | AGGCTTTTTCTAAATTTGAT+TGG | + | chr1_4:7816209-7816228 | Msa0147790:CDS | 25.0% |
| ! | AGAAAATAACACAAAGTCAT+GGG | + | chr1_4:7815811-7815830 | Msa0147790:CDS | 25.0% |
| !!! | AGGCTTTTTCTAAATTTGAT+TGG | + | chr1_4:7816209-7816228 | Msa0147790:CDS | 25.0% |
| AAGAGAAACAAAGTAAGCTA+AGG | + | chr1_4:7815711-7815730 | Msa0147790:CDS | 30.0% | |
| CAGAAAATAACACAAAGTCA+TGG | + | chr1_4:7815810-7815829 | Msa0147790:CDS | 30.0% | |
| GAAAATAACACAAAGTCATG+GGG | + | chr1_4:7815812-7815831 | Msa0147790:CDS | 30.0% | |
| TATGGAATCATAGTAACCAT+AGG | - | chr1_4:7815875-7815894 | None:intergenic | 30.0% | |
| TTCACCAAAGATTTCTTGTA+TGG | + | chr1_4:7815949-7815968 | Msa0147790:CDS | 30.0% | |
| TCACCAAAGATTTCTTGTAT+GGG | + | chr1_4:7815950-7815969 | Msa0147790:CDS | 30.0% | |
| AAATAGTGGTACATCTAATG+TGG | + | chr1_4:7816339-7816358 | Msa0147790:CDS | 30.0% | |
| CAAAGATTAATCTCATTCCT+TGG | - | chr1_4:7816382-7816401 | None:intergenic | 30.0% | |
| CAAGGAATGAGATTAATCTT+TGG | + | chr1_4:7816380-7816399 | Msa0147790:CDS | 30.0% | |
| AAGAGAAACAAAGTAAGCTA+AGG | + | chr1_4:7815711-7815730 | Msa0147790:CDS | 30.0% | |
| CAGAAAATAACACAAAGTCA+TGG | + | chr1_4:7815810-7815829 | Msa0147790:CDS | 30.0% | |
| GAAAATAACACAAAGTCATG+GGG | + | chr1_4:7815812-7815831 | Msa0147790:CDS | 30.0% | |
| TATGGAATCATAGTAACCAT+AGG | - | chr1_4:7815875-7815894 | None:intergenic | 30.0% | |
| TTCACCAAAGATTTCTTGTA+TGG | + | chr1_4:7815949-7815968 | Msa0147790:CDS | 30.0% | |
| TCACCAAAGATTTCTTGTAT+GGG | + | chr1_4:7815950-7815969 | Msa0147790:CDS | 30.0% | |
| AAATAGTGGTACATCTAATG+TGG | + | chr1_4:7816339-7816358 | Msa0147790:CDS | 30.0% | |
| CAAAGATTAATCTCATTCCT+TGG | - | chr1_4:7816382-7816401 | None:intergenic | 30.0% | |
| CAAGGAATGAGATTAATCTT+TGG | + | chr1_4:7816380-7816399 | Msa0147790:CDS | 30.0% | |
| CTAAATTTGTGATCTCTTCC+TGG | - | chr1_4:7815788-7815807 | None:intergenic | 35.0% | |
| AAAAACTCATGCTACTGGTA+AGG | + | chr1_4:7815838-7815857 | Msa0147790:CDS | 35.0% | |
| AAAACTCATGCTACTGGTAA+GGG | + | chr1_4:7815839-7815858 | Msa0147790:CDS | 35.0% | |
| !!! | GGTTTTCTTCTAGCTTCATA+TGG | - | chr1_4:7815893-7815912 | None:intergenic | 35.0% |
| GCTAGAAGAAAACCTAAAGA+TGG | + | chr1_4:7815899-7815918 | Msa0147790:CDS | 35.0% | |
| AGAAGAAAACCTAAAGATGG+TGG | + | chr1_4:7815902-7815921 | Msa0147790:CDS | 35.0% | |
| CAAGAAATCTTTGGTGAAGT+AGG | - | chr1_4:7815947-7815966 | None:intergenic | 35.0% | |
| TGTCCCATACAAGAAATCTT+TGG | - | chr1_4:7815956-7815975 | None:intergenic | 35.0% | |
| TAAAGAGATCGAAGTTTCAG+AGG | + | chr1_4:7816062-7816081 | Msa0147790:CDS | 35.0% | |
| !! | GTTCTGGATTTGTTGATGAA+GGG | + | chr1_4:7816134-7816153 | Msa0147790:CDS | 35.0% |
| AGCCTGAAGAAATTGATCAA+AGG | + | chr1_4:7816245-7816264 | Msa0147790:CDS | 35.0% | |
| GCCTGAAGAAATTGATCAAA+GGG | + | chr1_4:7816246-7816265 | Msa0147790:CDS | 35.0% | |
| TCCCTTTGATCAATTTCTTC+AGG | - | chr1_4:7816250-7816269 | None:intergenic | 35.0% | |
| CCTAAAATAGGTGCAGAAAA+TGG | - | chr1_4:7816310-7816329 | None:intergenic | 35.0% | |
| ! | CCATTTTCTGCACCTATTTT+AGG | + | chr1_4:7816307-7816326 | Msa0147790:CDS | 35.0% |
| TTTCCACCAACACCTAAAAT+AGG | - | chr1_4:7816322-7816341 | None:intergenic | 35.0% | |
| ! | CTGATTTGAAGTTTAAGCCA+AGG | + | chr1_4:7816362-7816381 | Msa0147790:CDS | 35.0% |
| ! | TCTTTGGAAGAGAAGAACAA+TGG | + | chr1_4:7816396-7816415 | Msa0147790:CDS | 35.0% |
| CTAAATTTGTGATCTCTTCC+TGG | - | chr1_4:7815788-7815807 | None:intergenic | 35.0% | |
| AAAAACTCATGCTACTGGTA+AGG | + | chr1_4:7815838-7815857 | Msa0147790:CDS | 35.0% | |
| AAAACTCATGCTACTGGTAA+GGG | + | chr1_4:7815839-7815858 | Msa0147790:CDS | 35.0% | |
| !!! | GGTTTTCTTCTAGCTTCATA+TGG | - | chr1_4:7815893-7815912 | None:intergenic | 35.0% |
| GCTAGAAGAAAACCTAAAGA+TGG | + | chr1_4:7815899-7815918 | Msa0147790:CDS | 35.0% | |
| AGAAGAAAACCTAAAGATGG+TGG | + | chr1_4:7815902-7815921 | Msa0147790:CDS | 35.0% | |
| CAAGAAATCTTTGGTGAAGT+AGG | - | chr1_4:7815947-7815966 | None:intergenic | 35.0% | |
| TGTCCCATACAAGAAATCTT+TGG | - | chr1_4:7815956-7815975 | None:intergenic | 35.0% | |
| TAAAGAGATCGAAGTTTCAG+AGG | + | chr1_4:7816062-7816081 | Msa0147790:CDS | 35.0% | |
| !! | GTTCTGGATTTGTTGATGAA+GGG | + | chr1_4:7816134-7816153 | Msa0147790:CDS | 35.0% |
| AGCCTGAAGAAATTGATCAA+AGG | + | chr1_4:7816245-7816264 | Msa0147790:CDS | 35.0% | |
| GCCTGAAGAAATTGATCAAA+GGG | + | chr1_4:7816246-7816265 | Msa0147790:CDS | 35.0% | |
| TCCCTTTGATCAATTTCTTC+AGG | - | chr1_4:7816250-7816269 | None:intergenic | 35.0% | |
| CCTAAAATAGGTGCAGAAAA+TGG | - | chr1_4:7816310-7816329 | None:intergenic | 35.0% | |
| ! | CCATTTTCTGCACCTATTTT+AGG | + | chr1_4:7816307-7816326 | Msa0147790:CDS | 35.0% |
| TTTCCACCAACACCTAAAAT+AGG | - | chr1_4:7816322-7816341 | None:intergenic | 35.0% | |
| ! | CTGATTTGAAGTTTAAGCCA+AGG | + | chr1_4:7816362-7816381 | Msa0147790:CDS | 35.0% |
| ! | TCTTTGGAAGAGAAGAACAA+TGG | + | chr1_4:7816396-7816415 | Msa0147790:CDS | 35.0% |
| ! | TAAGGGATTTTCTGGACCTA+TGG | + | chr1_4:7815856-7815875 | Msa0147790:CDS | 40.0% |
| ! | AGAAAACCTAAAGATGGTGG+TGG | + | chr1_4:7815905-7815924 | Msa0147790:CDS | 40.0% |
| ! | GAGAGATCTTTGTTGGGTTT+TGG | - | chr1_4:7816007-7816026 | None:intergenic | 40.0% |
| GAAGTGGAGAGATCTTTGTT+GGG | - | chr1_4:7816013-7816032 | None:intergenic | 40.0% | |
| !!! | TTCAGAGGATTTTTTCGCAG+AGG | + | chr1_4:7816077-7816096 | Msa0147790:CDS | 40.0% |
| TTTGCGGAAAGGAAATCAGA+TGG | + | chr1_4:7816112-7816131 | Msa0147790:CDS | 40.0% | |
| GAAAGGAAATCAGATGGTTC+TGG | + | chr1_4:7816118-7816137 | Msa0147790:CDS | 40.0% | |
| !! | GGTTCTGGATTTGTTGATGA+AGG | + | chr1_4:7816133-7816152 | Msa0147790:CDS | 40.0% |
| AATCTCCTCATATCACCCAT+CGG | - | chr1_4:7816175-7816194 | None:intergenic | 40.0% | |
| GATATGAGGAGATTTGCAAG+TGG | + | chr1_4:7816181-7816200 | Msa0147790:CDS | 40.0% | |
| CAAAGGGATTGCTTTACTGA+TGG | + | chr1_4:7816262-7816281 | Msa0147790:CDS | 40.0% | |
| !! | TCTGCACCTATTTTAGGTGT+TGG | + | chr1_4:7816313-7816332 | Msa0147790:CDS | 40.0% |
| !! | TTAGGTGTTGGTGGAAATAG+TGG | + | chr1_4:7816325-7816344 | Msa0147790:CDS | 40.0% |
| ! | TAAGGGATTTTCTGGACCTA+TGG | + | chr1_4:7815856-7815875 | Msa0147790:CDS | 40.0% |
| ! | AGAAAACCTAAAGATGGTGG+TGG | + | chr1_4:7815905-7815924 | Msa0147790:CDS | 40.0% |
| ! | GAGAGATCTTTGTTGGGTTT+TGG | - | chr1_4:7816007-7816026 | None:intergenic | 40.0% |
| GAAGTGGAGAGATCTTTGTT+GGG | - | chr1_4:7816013-7816032 | None:intergenic | 40.0% | |
| !!! | TTCAGAGGATTTTTTCGCAG+AGG | + | chr1_4:7816077-7816096 | Msa0147790:CDS | 40.0% |
| TTTGCGGAAAGGAAATCAGA+TGG | + | chr1_4:7816112-7816131 | Msa0147790:CDS | 40.0% | |
| GAAAGGAAATCAGATGGTTC+TGG | + | chr1_4:7816118-7816137 | Msa0147790:CDS | 40.0% | |
| !! | GGTTCTGGATTTGTTGATGA+AGG | + | chr1_4:7816133-7816152 | Msa0147790:CDS | 40.0% |
| AATCTCCTCATATCACCCAT+CGG | - | chr1_4:7816175-7816194 | None:intergenic | 40.0% | |
| GATATGAGGAGATTTGCAAG+TGG | + | chr1_4:7816181-7816200 | Msa0147790:CDS | 40.0% | |
| CAAAGGGATTGCTTTACTGA+TGG | + | chr1_4:7816262-7816281 | Msa0147790:CDS | 40.0% | |
| !! | TCTGCACCTATTTTAGGTGT+TGG | + | chr1_4:7816313-7816332 | Msa0147790:CDS | 40.0% |
| !! | TTAGGTGTTGGTGGAAATAG+TGG | + | chr1_4:7816325-7816344 | Msa0147790:CDS | 40.0% |
| TGATCTCTTCCTGGACTGAA+AGG | - | chr1_4:7815779-7815798 | None:intergenic | 45.0% | |
| GGTGCAAAAACTCATGCTAC+TGG | + | chr1_4:7815833-7815852 | Msa0147790:CDS | 45.0% | |
| ! | GCTACTGGTAAGGGATTTTC+TGG | + | chr1_4:7815848-7815867 | Msa0147790:CDS | 45.0% |
| TCATTGCCACCACCATCTTT+AGG | - | chr1_4:7815914-7815933 | None:intergenic | 45.0% | |
| GGAAGTGGAGAGATCTTTGT+TGG | - | chr1_4:7816014-7816033 | None:intergenic | 45.0% | |
| ATCCACCTTTGCAGTGGATA+CGG | - | chr1_4:7816035-7816054 | None:intergenic | 45.0% | |
| ATCCACTGCAAAGGTGGATA+CGG | + | chr1_4:7816036-7816055 | Msa0147790:CDS | 45.0% | |
| ! | GAGGTCTAGAGCGAAATTTG+CGG | + | chr1_4:7816096-7816115 | Msa0147790:CDS | 45.0% |
| CTAGAGCGAAATTTGCGGAA+AGG | + | chr1_4:7816101-7816120 | Msa0147790:CDS | 45.0% | |
| GGATTGCTTTACTGATGGAG+AGG | + | chr1_4:7816267-7816286 | Msa0147790:CDS | 45.0% | |
| TTGCTTTACTGATGGAGAGG+AGG | + | chr1_4:7816270-7816289 | Msa0147790:CDS | 45.0% | |
| !!! | GCACCTATTTTAGGTGTTGG+TGG | + | chr1_4:7816316-7816335 | Msa0147790:CDS | 45.0% |
| AGCACAGGATTCAACTGAAG+AGG | - | chr1_4:7816433-7816452 | None:intergenic | 45.0% | |
| TGATCTCTTCCTGGACTGAA+AGG | - | chr1_4:7815779-7815798 | None:intergenic | 45.0% | |
| GGTGCAAAAACTCATGCTAC+TGG | + | chr1_4:7815833-7815852 | Msa0147790:CDS | 45.0% | |
| ! | GCTACTGGTAAGGGATTTTC+TGG | + | chr1_4:7815848-7815867 | Msa0147790:CDS | 45.0% |
| TCATTGCCACCACCATCTTT+AGG | - | chr1_4:7815914-7815933 | None:intergenic | 45.0% | |
| GGAAGTGGAGAGATCTTTGT+TGG | - | chr1_4:7816014-7816033 | None:intergenic | 45.0% | |
| ATCCACCTTTGCAGTGGATA+CGG | - | chr1_4:7816035-7816054 | None:intergenic | 45.0% | |
| ATCCACTGCAAAGGTGGATA+CGG | + | chr1_4:7816036-7816055 | Msa0147790:CDS | 45.0% | |
| ! | GAGGTCTAGAGCGAAATTTG+CGG | + | chr1_4:7816096-7816115 | Msa0147790:CDS | 45.0% |
| CTAGAGCGAAATTTGCGGAA+AGG | + | chr1_4:7816101-7816120 | Msa0147790:CDS | 45.0% | |
| GGATTGCTTTACTGATGGAG+AGG | + | chr1_4:7816267-7816286 | Msa0147790:CDS | 45.0% | |
| TTGCTTTACTGATGGAGAGG+AGG | + | chr1_4:7816270-7816289 | Msa0147790:CDS | 45.0% | |
| !!! | GCACCTATTTTAGGTGTTGG+TGG | + | chr1_4:7816316-7816335 | Msa0147790:CDS | 45.0% |
| AGCACAGGATTCAACTGAAG+AGG | - | chr1_4:7816433-7816452 | None:intergenic | 45.0% | |
| CAAAACGCTCCTTTCAGTCC+AGG | + | chr1_4:7815767-7815786 | Msa0147790:CDS | 50.0% | |
| CTTTGCAGTGGATACGGAAG+TGG | - | chr1_4:7816029-7816048 | None:intergenic | 50.0% | |
| CACTTCCGTATCCACTGCAA+AGG | + | chr1_4:7816027-7816046 | Msa0147790:CDS | 50.0% | |
| TTCCGTATCCACTGCAAAGG+TGG | + | chr1_4:7816030-7816049 | Msa0147790:CDS | 50.0% | |
| !! | AACAACAAAGCACCGCCGAT+GGG | + | chr1_4:7816157-7816176 | Msa0147790:CDS | 50.0% |
| GAGATTTGCAAGTGGACGTG+AGG | + | chr1_4:7816189-7816208 | Msa0147790:CDS | 50.0% | |
| GAAGAACAATGGCTCCACCT+AGG | + | chr1_4:7816407-7816426 | Msa0147790:CDS | 50.0% | |
| TTCAACTGAAGAGGCCTAGG+TGG | - | chr1_4:7816424-7816443 | None:intergenic | 50.0% | |
| GGATTCAACTGAAGAGGCCT+AGG | - | chr1_4:7816427-7816446 | None:intergenic | 50.0% | |
| CAAAACGCTCCTTTCAGTCC+AGG | + | chr1_4:7815767-7815786 | Msa0147790:CDS | 50.0% | |
| CTTTGCAGTGGATACGGAAG+TGG | - | chr1_4:7816029-7816048 | None:intergenic | 50.0% | |
| CACTTCCGTATCCACTGCAA+AGG | + | chr1_4:7816027-7816046 | Msa0147790:CDS | 50.0% | |
| TTCCGTATCCACTGCAAAGG+TGG | + | chr1_4:7816030-7816049 | Msa0147790:CDS | 50.0% | |
| !! | AACAACAAAGCACCGCCGAT+GGG | + | chr1_4:7816157-7816176 | Msa0147790:CDS | 50.0% |
| GAGATTTGCAAGTGGACGTG+AGG | + | chr1_4:7816189-7816208 | Msa0147790:CDS | 50.0% | |
| GAAGAACAATGGCTCCACCT+AGG | + | chr1_4:7816407-7816426 | Msa0147790:CDS | 50.0% | |
| TTCAACTGAAGAGGCCTAGG+TGG | - | chr1_4:7816424-7816443 | None:intergenic | 50.0% | |
| GGATTCAACTGAAGAGGCCT+AGG | - | chr1_4:7816427-7816446 | None:intergenic | 50.0% | |
| CTCCGTATCCACCTTTGCAG+TGG | - | chr1_4:7816041-7816060 | None:intergenic | 55.0% | |
| CACTGCAAAGGTGGATACGG+AGG | + | chr1_4:7816039-7816058 | Msa0147790:CDS | 55.0% | |
| !! | GAACAACAAAGCACCGCCGA+TGG | + | chr1_4:7816156-7816175 | Msa0147790:CDS | 55.0% |
| CTCCTCATATCACCCATCGG+CGG | - | chr1_4:7816172-7816191 | None:intergenic | 55.0% | |
| CTCCGTATCCACCTTTGCAG+TGG | - | chr1_4:7816041-7816060 | None:intergenic | 55.0% | |
| CACTGCAAAGGTGGATACGG+AGG | + | chr1_4:7816039-7816058 | Msa0147790:CDS | 55.0% | |
| !! | GAACAACAAAGCACCGCCGA+TGG | + | chr1_4:7816156-7816175 | Msa0147790:CDS | 55.0% |
| CTCCTCATATCACCCATCGG+CGG | - | chr1_4:7816172-7816191 | None:intergenic | 55.0% | |
| CACCGCCGATGGGTGATATG+AGG | + | chr1_4:7816167-7816186 | Msa0147790:CDS | 60.0% | |
| CACCGCCGATGGGTGATATG+AGG | + | chr1_4:7816167-7816186 | Msa0147790:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 7815704 | 7816465 | 7815704 | ID=Msa0147790;Name=Msa0147790 |
| chr1_4 | mRNA | 7815704 | 7816465 | 7815704 | ID=Msa0147790-mRNA-1;Parent=Msa0147790;Name=Msa0147790-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|253 |
| chr1_4 | exon | 7815704 | 7816465 | 7815704 | ID=Msa0147790-mRNA-1:exon:3355;Parent=Msa0147790-mRNA-1 |
| chr1_4 | CDS | 7815704 | 7816465 | 7815704 | ID=Msa0147790-mRNA-1:cds;Parent=Msa0147790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
