AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0376600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0376600 MtrunA17_Chr3g0126951 98.020 404 7 1 1 403 1 404 0.0 816
Msa0376600 MtrunA17_Chr1g0171331 93.675 332 15 1 72 403 19 344 0.0 600
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0376600 AT5G53000.1 70.617 405 117 1 1 403 1 405 0.0 580

Find 129 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACACCAACCACTGATATT+TGG 0.154577 3_1:-76696768 Msa0376600:CDS
TAAGATTCTAACTCCTCTTT+TGG 0.196712 3_1:+76698194 None:intergenic
AAGAAAACATGACACCTTTC+TGG 0.241137 3_1:+76698133 None:intergenic
TTCCGGTGAAAGATAATAAT+TGG 0.248157 3_1:+76699641 None:intergenic
TGTTCAGGCATTTGATCTTC+TGG 0.248796 3_1:-76697380 Msa0376600:intron
AGGGGTAAGCTTCGAATTTC+CGG 0.250990 3_1:+76696230 None:intergenic
GATTCTGTTGGTAGTGTTTC+CGG 0.262024 3_1:+76699624 None:intergenic
AATGCGAAAACATGATTAAT+AGG 0.270151 3_1:-76699362 Msa0376600:CDS
CCACTCCTGGTTGAGCTATA+TGG 0.287124 3_1:+76695952 None:intergenic
CTCTGATCAGCAACAGCTTT+TGG 0.287618 3_1:+76698158 None:intergenic
GAGCTAGAGCTTTGGATGAT+TGG 0.301964 3_1:-76696275 Msa0376600:CDS
TCTTCCTCTCCTGCCTCAAC+AGG 0.311176 3_1:+76697838 None:intergenic
GGTTGTGCTGATATCCTCTT+TGG 0.321034 3_1:+76699314 None:intergenic
TTGGAATACTAGCATATCTT+TGG 0.334027 3_1:-76697488 Msa0376600:CDS
AACACCAACCACTGATATTT+GGG 0.339739 3_1:-76696767 Msa0376600:CDS
ATTGGCTTCTTCAATGAATC+TGG 0.346117 3_1:+76696374 None:intergenic
ATCATTGTGCCAAGATGAAT+TGG 0.351143 3_1:+76696356 None:intergenic
CTGCCTCAACAGGGGTGGAC+AGG 0.380810 3_1:+76697848 None:intergenic
GATGGAGGACATGCCGTTAC+CGG 0.383115 3_1:-76699559 Msa0376600:CDS
TACCTTCGCTCAAGATGTTC+TGG 0.387841 3_1:-76696826 Msa0376600:CDS
CTTCCATTCACAAAACTTTG+TGG 0.391305 3_1:+76696744 None:intergenic
CATATCTTTGGCAATCTGTA+AGG 0.394600 3_1:-76697476 Msa0376600:intron
ATTCATCTTGGCACAATGAT+AGG 0.398345 3_1:-76696353 Msa0376600:CDS
GGCAGGAGAGGAAGAACTAT+TGG 0.402541 3_1:-76697830 Msa0376600:CDS
GAGAGCAAGAATGGCAGCTC+AGG 0.410453 3_1:-76696709 Msa0376600:CDS
CCATGTTTAGGATGGGGATC+AGG 0.419549 3_1:-76696958 Msa0376600:intron
ATGTAGTCAGATGAATTTCC+AGG 0.421026 3_1:+76696080 None:intergenic
GATAAATATGTACCTATGAC+TGG 0.430417 3_1:+76696677 None:intergenic
ATATGGCAAATTAAACAAAC+TGG 0.437156 3_1:+76695969 None:intergenic
CTGTCCACCCCTGTTGAGGC+AGG 0.437775 3_1:-76697847 Msa0376600:CDS
AGGTCTTCCAACCCAGTCAT+AGG 0.441903 3_1:-76696689 Msa0376600:intron
TACAAATGAGAGAGCAAGAA+TGG 0.443576 3_1:-76696718 Msa0376600:CDS
TTGAAGAAGCCAATTCATCT+TGG 0.455058 3_1:-76696365 Msa0376600:CDS
CACGCCACCGCCACTGAGTC+CGG 0.455804 3_1:-76699510 Msa0376600:CDS
GCCTGGGAAGCCTTTAGAAT+CGG 0.455958 3_1:+76698401 None:intergenic
TCATCCTCCTCCTCTTCACC+TGG 0.457933 3_1:+76696321 None:intergenic
TGCCCTGTCCACCCCTGTTG+AGG 0.460057 3_1:-76697851 Msa0376600:CDS
GGAAGCAGGACTAAAAGAAA+TGG 0.466493 3_1:-76696427 Msa0376600:CDS
GATGATAATCCGCGGGGTGC+CGG 0.475557 3_1:-76696249 Msa0376600:CDS
TTTAAAGGAAATCCCACTCC+TGG 0.477352 3_1:+76695939 None:intergenic
TGCTCATTATTCTTCAACCT+GGG 0.489433 3_1:+76696184 None:intergenic
CTCTCCTGCCTCAACAGGGG+TGG 0.490362 3_1:+76697843 None:intergenic
CAAAAGCTGTTGCTGATCAG+AGG 0.494147 3_1:-76698157 Msa0376600:CDS
TCTGGAAATGATTAAGAAAG+AGG 0.495866 3_1:-76697362 Msa0376600:CDS
TGACGGAGAAGAAGAAAGAG+AGG 0.495976 3_1:-76697803 Msa0376600:intron
TTCCAATTATTATCTTTCAC+CGG 0.497028 3_1:-76699643 Msa0376600:five_prime_UTR
TGCCTCAACAGGGGTGGACA+GGG 0.499117 3_1:+76697849 None:intergenic
TAATTGAATCTATTCTTCCC+AGG 0.501131 3_1:-76696201 Msa0376600:three_prime_UTR
TCCGATGGGTGAGATGAAGA+TGG 0.501968 3_1:-76699577 Msa0376600:exon
GTCAACTCAGCAAGATAATA+CGG 0.507251 3_1:+76698452 None:intergenic
ACCGATTCTAAAGGCTTCCC+AGG 0.508228 3_1:-76698402 Msa0376600:CDS
TGAAGATGACGATGCTGCAC+AGG 0.511553 3_1:-76696301 Msa0376600:CDS
TGTTCAGGAGCTTGTCAAGA+AGG 0.513400 3_1:-76699403 Msa0376600:intron
GAAAACATGATTAATAGGCT+TGG 0.519278 3_1:-76699357 Msa0376600:CDS
GGAGATGCTTTCTGCTGTAA+AGG 0.520685 3_1:-76697338 Msa0376600:CDS
TTGCTCATTATTCTTCAACC+TGG 0.521555 3_1:+76696183 None:intergenic
AAATGGAAATTATGAATACA+TGG 0.530525 3_1:-76696410 Msa0376600:CDS
TGCTGATCAGAGGGCCAGAA+AGG 0.530837 3_1:-76698147 Msa0376600:intron
CTTCCTCTCCTGCCTCAACA+GGG 0.530933 3_1:+76697839 None:intergenic
AATTCGAAGCTTACCCCTTG+CGG 0.531093 3_1:-76696225 Msa0376600:CDS
AGAAAATAGCACATGATGAC+AGG 0.531695 3_1:-76698427 Msa0376600:CDS
TGCTTCCTCAATGCTCATAG+TGG 0.531761 3_1:+76696443 None:intergenic
ACAGGATAGAGCTAGAGCTT+TGG 0.535946 3_1:-76696283 Msa0376600:CDS
TAGAGCTTTGGATGATTGGA+AGG 0.539728 3_1:-76696271 Msa0376600:CDS
GTTCAGGAGCTTGTCAAGAA+GGG 0.541089 3_1:-76699402 Msa0376600:intron
GAAGTTTAAGCCAGGTGAAG+AGG 0.541846 3_1:-76696331 Msa0376600:CDS
CGTCTGAGATTTGATTCTGT+TGG 0.545001 3_1:+76699612 None:intergenic
GAAACGAAAGCGTACTTGGT+CGG 0.545373 3_1:+76699485 None:intergenic
TAAGCCAGGTGAAGAGGAGG+AGG 0.545443 3_1:-76696325 Msa0376600:CDS
GGCACCGGACTCAGTGGCGG+TGG 0.546659 3_1:+76699506 None:intergenic
CGGACTCAGTGGCGGTGGCG+TGG 0.550530 3_1:+76699511 None:intergenic
ATATGTACCTATGACTGGGT+TGG 0.554490 3_1:+76696682 None:intergenic
GCGAAGGTAGCACATGTGAT+TGG 0.558292 3_1:+76696840 None:intergenic
CACCCCTGTTGAGGCAGGAG+AGG 0.559655 3_1:-76697842 Msa0376600:CDS
ATAGATTCAATTAGCCGCAA+GGG 0.564088 3_1:+76696211 None:intergenic
CTTGCTTGTTCAAACAGCGC+CGG 0.565472 3_1:+76699540 None:intergenic
GCTTCCTCAATGCTCATAGT+GGG 0.565665 3_1:+76696444 None:intergenic
AAAGCGTACTTGGTCGGCAC+CGG 0.566041 3_1:+76699491 None:intergenic
GATGGAGCTGGTCCCAAAAG+AGG 0.566346 3_1:-76698207 Msa0376600:CDS
TCCATCTTCATCTCACCCAT+CGG 0.567407 3_1:+76699576 None:intergenic
TTGGAAGGATGATAATCCGC+GGG 0.569064 3_1:-76696256 Msa0376600:CDS
CCATATAGCTCAACCAGGAG+TGG 0.569742 3_1:-76695952 Msa0376600:three_prime_UTR
TGTTCAAACAGCGCCGGTAA+CGG 0.569938 3_1:+76699546 None:intergenic
CTCTGCTAATGAAACCAAAG+AGG 0.570061 3_1:-76699328 Msa0376600:CDS
GTAAAACATAGAATAAAAGA+AGG 0.570626 3_1:+76696014 None:intergenic
TTCCAGAACATCTTGAGCGA+AGG 0.571431 3_1:+76696824 None:intergenic
GCACATGTGATTGGTGGAGA+TGG 0.572371 3_1:+76696849 None:intergenic
CATATAGCTCAACCAGGAGT+GGG 0.572704 3_1:-76695951 Msa0376600:three_prime_UTR
TGACAGGATACCGATTCTAA+AGG 0.573766 3_1:-76698411 Msa0376600:CDS
AGTTAGAATCTTATATGCAA+GGG 0.574858 3_1:-76698184 Msa0376600:CDS
AAGGTAGCACATGTGATTGG+TGG 0.577338 3_1:+76696843 None:intergenic
CAAAATCTTTAACACAGACT+AGG 0.577669 3_1:+76696107 None:intergenic
GAGTTAGAATCTTATATGCA+AGG 0.580289 3_1:-76698185 Msa0376600:CDS
GTTAGAAATAAACGAGCGAA+AGG 0.582445 3_1:-76697902 Msa0376600:CDS
CGGCGCTGTTTGAACAAGCA+AGG 0.583327 3_1:-76699539 Msa0376600:CDS
GTTTAAGCCAGGTGAAGAGG+AGG 0.583570 3_1:-76696328 Msa0376600:CDS
GGCTTCCCAGGCAAAACTGA+AGG 0.587652 3_1:-76698390 Msa0376600:intron
TGTAAAGGATAGACAATCCA+AGG 0.589440 3_1:-76697323 Msa0376600:intron
TTTGTGTTCGTGTGCTTGCG+AGG 0.589889 3_1:+76696788 None:intergenic
AAAAGCTGTTGCTGATCAGA+GGG 0.591137 3_1:-76698156 Msa0376600:CDS
GGAAATGATTAAGAAAGAGG+AGG 0.591992 3_1:-76697359 Msa0376600:CDS
AACCGATCTCAAGTACATCC+TGG 0.592669 3_1:-76699295 Msa0376600:intron
GTGGCCCAAATATCAGTGGT+TGG 0.592707 3_1:+76696763 None:intergenic
ACTATGAGCATTGAGGAAGC+AGG 0.594997 3_1:-76696441 Msa0376600:CDS
TTCCTCTCCTGCCTCAACAG+GGG 0.599086 3_1:+76697840 None:intergenic
TACCAGGATGTACTTGAGAT+CGG 0.603064 3_1:+76699293 None:intergenic
AATGATAGGAAGTTTAAGCC+AGG 0.610210 3_1:-76696339 Msa0376600:CDS
AAATAAACGAGCGAAAGGAA+CGG 0.614011 3_1:-76697897 Msa0376600:CDS
AATAGATTCAATTAGCCGCA+AGG 0.614970 3_1:+76696210 None:intergenic
GAATAAAAGAAGGTGAGATG+AGG 0.616605 3_1:+76696024 None:intergenic
GAAGAACTATTGGAAGATGA+CGG 0.618639 3_1:-76697820 Msa0376600:CDS
ATTTGCCATATAGCTCAACC+AGG 0.621910 3_1:-76695957 Msa0376600:three_prime_UTR
ATAAATATGTACCTATGACT+GGG 0.627631 3_1:+76696678 None:intergenic
CTTTGTGGCCCAAATATCAG+TGG 0.628060 3_1:+76696759 None:intergenic
TTCGCTCAAGATGTTCTGGA+AGG 0.633258 3_1:-76696822 Msa0376600:CDS
GTCGGCACCGGACTCAGTGG+CGG 0.633971 3_1:+76699503 None:intergenic
AGGTTGAAGAATAATGAGCA+AGG 0.634107 3_1:-76696181 Msa0376600:three_prime_UTR
ACGAGCGAAAGGAACGGCGT+GGG 0.637909 3_1:-76697891 Msa0376600:CDS
GTTAGAATCTTATATGCAAG+GGG 0.638453 3_1:-76698183 Msa0376600:CDS
GGTTGAAGAATAATGAGCAA+GGG 0.648208 3_1:-76696180 Msa0376600:three_prime_UTR
GATGCCCACTATGAGCATTG+AGG 0.648707 3_1:-76696448 Msa0376600:CDS
TTGGTCGGCACCGGACTCAG+TGG 0.649187 3_1:+76699500 None:intergenic
TTCGAATTTCCGGCACCCCG+CGG 0.649460 3_1:+76696240 None:intergenic
TAGATTCAATTAGCCGCAAG+GGG 0.654034 3_1:+76696212 None:intergenic
AACGAGCGAAAGGAACGGCG+TGG 0.663839 3_1:-76697892 Msa0376600:CDS
ATTGGAAGGATGATAATCCG+CGG 0.675321 3_1:-76696257 Msa0376600:CDS
GCTTGTCAAGAAGGGATGCG+AGG 0.685734 3_1:-76699394 Msa0376600:CDS
GATGGGTGAGATGAAGATGG+AGG 0.688122 3_1:-76699574 Msa0376600:CDS
TGGAAGGATGATAATCCGCG+GGG 0.769686 3_1:-76696255 Msa0376600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATTGAAGAAATTAACA+AGG + chr3_1:76697278-76697297 None:intergenic 15.0%
!!! TTACTGAAAACATTTTTTTT+AGG - chr3_1:76697325-76697344 Msa0376600:CDS 15.0%
!! AAATATAAGTTTAAACAAAG+TGG + chr3_1:76698151-76698170 None:intergenic 15.0%
!! TAGTAAGTCTAGTTATTATA+AGG - chr3_1:76696451-76696470 Msa0376600:CDS 20.0%
!! AATCCTAATGTGTATTAATA+TGG - chr3_1:76696955-76696974 Msa0376600:intron 20.0%
!! ATCCTAATGTGTATTAATAT+GGG - chr3_1:76696956-76696975 Msa0376600:intron 20.0%
!! GATAACAAAAAATTGGTAAA+TGG + chr3_1:76697092-76697111 None:intergenic 20.0%
!! TTTCATAACAAGTGAATAAT+GGG + chr3_1:76697536-76697555 None:intergenic 20.0%
!!! TTTTCATAACAAGTGAATAA+TGG + chr3_1:76697537-76697556 None:intergenic 20.0%
!! TTATATTTCGATTATTCTCA+TGG - chr3_1:76698163-76698182 Msa0376600:CDS 20.0%
!!! GTTTTATATTGCCATAATTA+TGG - chr3_1:76698348-76698367 Msa0376600:intron 20.0%
!! AATGTGCATTTATTGATAAA+GGG + chr3_1:76698926-76698945 None:intergenic 20.0%
!! AAATGTGCATTTATTGATAA+AGG + chr3_1:76698927-76698946 None:intergenic 20.0%
!! AAATGGAAATTATGAATACA+TGG - chr3_1:76699167-76699186 Msa0376600:intron 20.0%
!! GTAAAACATAGAATAAAAGA+AGG + chr3_1:76699566-76699585 None:intergenic 20.0%
! TTCCAATTATTATCTTTCAC+CGG - chr3_1:76695934-76695953 Msa0376600:three_prime_UTR 25.0%
! AATGCGAAAACATGATTAAT+AGG - chr3_1:76696215-76696234 Msa0376600:exon 25.0%
! TTCTACTAGATTTCTATGTT+TGG + chr3_1:76696727-76696746 None:intergenic 25.0%
! AATAAAACACGATTACACAA+TGG - chr3_1:76696766-76696785 Msa0376600:CDS 25.0%
! ATAAAACACGATTACACAAT+GGG - chr3_1:76696767-76696786 Msa0376600:CDS 25.0%
!! TAAATTTTTCCAGTTTCACT+CGG + chr3_1:76696838-76696857 None:intergenic 25.0%
! TTCCCATATTAATACACATT+AGG + chr3_1:76696961-76696980 None:intergenic 25.0%
! CTTCAATATTCTGTACTTAA+AGG + chr3_1:76697039-76697058 None:intergenic 25.0%
! AGGGAATGATAACAAAAAAT+TGG + chr3_1:76697099-76697118 None:intergenic 25.0%
! TTTCAGTAAGCTTCAATAAA+AGG + chr3_1:76697314-76697333 None:intergenic 25.0%
! AGTTAGAATCTTATATGCAA+GGG - chr3_1:76697393-76697412 Msa0376600:intron 25.0%
! ACTAAATAAAGTAGCAGTAA+TGG + chr3_1:76697823-76697842 None:intergenic 25.0%
!!! ATTACTGCTACTTTATTTAG+TGG - chr3_1:76697822-76697841 Msa0376600:CDS 25.0%
!!! TTACTGCTACTTTATTTAGT+GGG - chr3_1:76697823-76697842 Msa0376600:CDS 25.0%
!!! TTATTTTTCTTCTCCTTTTC+AGG - chr3_1:76698065-76698084 Msa0376600:intron 25.0%
! ATTATGGCAATATAAAACAG+TGG + chr3_1:76698346-76698365 None:intergenic 25.0%
! TTATATTGCCATAATTATGG+TGG - chr3_1:76698351-76698370 Msa0376600:intron 25.0%
! AATAAAAGTTAAGTTCTACC+AGG + chr3_1:76698432-76698451 None:intergenic 25.0%
!! CACATTTCACTTGATAATTA+TGG - chr3_1:76698466-76698485 Msa0376600:intron 25.0%
! ATAAATATGTACCTATGACT+GGG + chr3_1:76698902-76698921 None:intergenic 25.0%
! ATGTGCATTTATTGATAAAG+GGG + chr3_1:76698925-76698944 None:intergenic 25.0%
!! ATTGAACTTCATTTTCTTTC+AGG + chr3_1:76699011-76699030 None:intergenic 25.0%
!!! TGAGTTGAATATTTTGTTGA+AGG - chr3_1:76699107-76699126 Msa0376600:intron 25.0%
!! TGTTAAAGATTTTGTATACC+TGG - chr3_1:76699479-76699498 Msa0376600:intron 25.0%
! ATATGGCAAATTAAACAAAC+TGG + chr3_1:76699611-76699630 None:intergenic 25.0%
TTCCGGTGAAAGATAATAAT+TGG + chr3_1:76695939-76695958 None:intergenic 30.0%
! ACGTTAATTTTCTTTTCCGA+TGG - chr3_1:76695985-76696004 Msa0376600:three_prime_UTR 30.0%
! CGTTAATTTTCTTTTCCGAT+GGG - chr3_1:76695986-76696005 Msa0376600:three_prime_UTR 30.0%
GAAAACATGATTAATAGGCT+TGG - chr3_1:76696220-76696239 Msa0376600:exon 30.0%
GGAATGAGTATAAAAATCCA+AGG - chr3_1:76696501-76696520 Msa0376600:intron 30.0%
CTGTGCAATTTATTGTAATG+CGG - chr3_1:76696619-76696638 Msa0376600:intron 30.0%
TTGTGTTCTTAAGAGATGTT+TGG - chr3_1:76696655-76696674 Msa0376600:intron 30.0%
TTCATGATTGTGATAGAAAC+TGG - chr3_1:76696699-76696718 Msa0376600:CDS 30.0%
ACTAGTTGTTGCACATATTT+AGG + chr3_1:76696875-76696894 None:intergenic 30.0%
!!! TTTTTTGTTATCATTCCCTC+AGG - chr3_1:76697100-76697119 Msa0376600:intron 30.0%
! TGTGCATATAGTGTTGAATT+GGG + chr3_1:76697253-76697272 None:intergenic 30.0%
! TTGTGCATATAGTGTTGAAT+TGG + chr3_1:76697254-76697273 None:intergenic 30.0%
! GGAATTTATCTCATTTTGTG+AGG - chr3_1:76697346-76697365 Msa0376600:CDS 30.0%
! AAGATTCTAACTCCTCTTTT+GGG + chr3_1:76697385-76697404 None:intergenic 30.0%
! TAAGATTCTAACTCCTCTTT+TGG + chr3_1:76697386-76697405 None:intergenic 30.0%
GAGTTAGAATCTTATATGCA+AGG - chr3_1:76697392-76697411 Msa0376600:intron 30.0%
GTTAGAATCTTATATGCAAG+GGG - chr3_1:76697394-76697413 Msa0376600:intron 30.0%
AAGCTAGTCCAATAATATGT+AGG + chr3_1:76697951-76697970 None:intergenic 30.0%
! CTAGCTTGTGATTTATGAAA+TGG - chr3_1:76697964-76697983 Msa0376600:intron 30.0%
GGAGAAGAAAAATAAGTGAA+TGG + chr3_1:76698060-76698079 None:intergenic 30.0%
TTGGAATACTAGCATATCTT+TGG - chr3_1:76698089-76698108 Msa0376600:intron 30.0%
TCTGGAAATGATTAAGAAAG+AGG - chr3_1:76698215-76698234 Msa0376600:CDS 30.0%
! TACTAAGCATTTTACTACCT+TGG + chr3_1:76698274-76698293 None:intergenic 30.0%
AAAGATCTCAACCACAATAA+TGG + chr3_1:76698315-76698334 None:intergenic 30.0%
AAAGATCTCCACCATAATTA+TGG + chr3_1:76698362-76698381 None:intergenic 30.0%
! AATTATGGTGGAGATCTTTA+TGG - chr3_1:76698363-76698382 Msa0376600:intron 30.0%
! ATTATGGTGGAGATCTTTAT+GGG - chr3_1:76698364-76698383 Msa0376600:intron 30.0%
CTTAAAGAACTGTTATAACC+TGG - chr3_1:76698411-76698430 Msa0376600:CDS 30.0%
! CTTGATAATTATGGAATACC+AGG - chr3_1:76698475-76698494 Msa0376600:intron 30.0%
!! TTCTTCTTTAAAGCAGAACA+TGG + chr3_1:76698536-76698555 None:intergenic 30.0%
!! TGTTCTGCTTTAAAGAAGAA+TGG - chr3_1:76698536-76698555 Msa0376600:intron 30.0%
!! GTTCTGCTTTAAAGAAGAAT+GGG - chr3_1:76698537-76698556 Msa0376600:intron 30.0%
!!! GGGAAATTGTTTTTTTTCTG+CGG - chr3_1:76698557-76698576 Msa0376600:intron 30.0%
!!! GGAAATTGTTTTTTTTCTGC+GGG - chr3_1:76698558-76698577 Msa0376600:intron 30.0%
! CTTGTAATTTTGCCATGTTT+AGG - chr3_1:76698607-76698626 Msa0376600:intron 30.0%
! TAATTTTGCCATGTTTAGGA+TGG - chr3_1:76698611-76698630 Msa0376600:intron 30.0%
!! AATTTTGCCATGTTTAGGAT+GGG - chr3_1:76698612-76698631 Msa0376600:intron 30.0%
!! GGAGTTTTCTAAGGATATTA+TGG - chr3_1:76698640-76698659 Msa0376600:intron 30.0%
GATAAATATGTACCTATGAC+TGG + chr3_1:76698903-76698922 None:intergenic 30.0%
AATGCACATTTCTTAGCTAA+TGG - chr3_1:76698936-76698955 Msa0376600:intron 30.0%
!! TAATGGAAAGCTTTGGAATA+GGG - chr3_1:76698953-76698972 Msa0376600:intron 30.0%
TTAGAACAACAAAACTGCAA+GGG + chr3_1:76699035-76699054 None:intergenic 30.0%
TAATTGAATCTATTCTTCCC+AGG - chr3_1:76699376-76699395 Msa0376600:CDS 30.0%
CAAAATCTTTAACACAGACT+AGG + chr3_1:76699473-76699492 None:intergenic 30.0%
! CTATGTTTTACATCTTCACA+TGG - chr3_1:76699575-76699594 Msa0376600:CDS 30.0%
!! GAGTTGTGTGTAATTTGTTC+AGG - chr3_1:76696159-76696178 Msa0376600:three_prime_UTR 35.0%
AATCAATCAATCGAAAAGCG+TGG + chr3_1:76696333-76696352 None:intergenic 35.0%
! AATTTTACATGCACCGAAGA+TGG + chr3_1:76696535-76696554 None:intergenic 35.0%
CTATCACAATCATGAACCAT+CGG + chr3_1:76696695-76696714 None:intergenic 35.0%
TGCAAGCATGAATGATGTTT+GGG + chr3_1:76696795-76696814 None:intergenic 35.0%
TTGCAAGCATGAATGATGTT+TGG + chr3_1:76696796-76696815 None:intergenic 35.0%
TTAAGTAAACCGAGTGAAAC+TGG - chr3_1:76696826-76696845 Msa0376600:CDS 35.0%
GTGTATTAATATGGGAAAGC+TGG - chr3_1:76696964-76696983 Msa0376600:intron 35.0%
TAAAGGTCACATGGGAATAT+GGG + chr3_1:76697022-76697041 None:intergenic 35.0%
TTAAAGGTCACATGGGAATA+TGG + chr3_1:76697023-76697042 None:intergenic 35.0%
TCTGTACTTAAAGGTCACAT+GGG + chr3_1:76697030-76697049 None:intergenic 35.0%
TTCTGTACTTAAAGGTCACA+TGG + chr3_1:76697031-76697050 None:intergenic 35.0%
GTCAACTCAGCAAGATAATA+CGG + chr3_1:76697128-76697147 None:intergenic 35.0%
!!! GTCATCATGTGCTATTTTCT+CGG + chr3_1:76697150-76697169 None:intergenic 35.0%
AGAAAATAGCACATGATGAC+AGG - chr3_1:76697150-76697169 Msa0376600:intron 35.0%
! ATAGTGTTGAATTGGGTGTT+GGG + chr3_1:76697246-76697265 None:intergenic 35.0%
! TATAGTGTTGAATTGGGTGT+TGG + chr3_1:76697247-76697266 None:intergenic 35.0%
AAGAAAACATGACACCTTTC+TGG + chr3_1:76697447-76697466 None:intergenic 35.0%
GTTAGAAATAAACGAGCGAA+AGG - chr3_1:76697675-76697694 Msa0376600:intron 35.0%
AAATAAACGAGCGAAAGGAA+CGG - chr3_1:76697680-76697699 Msa0376600:intron 35.0%
GAAGAACTATTGGAAGATGA+CGG - chr3_1:76697757-76697776 Msa0376600:intron 35.0%
!! AAAACACATTTTCAGGGAAG+CGG + chr3_1:76697865-76697884 None:intergenic 35.0%
! CAGGCAAAAACACATTTTCA+GGG + chr3_1:76697871-76697890 None:intergenic 35.0%
TGGATTTATCGACCATTAGA+TGG - chr3_1:76697892-76697911 Msa0376600:CDS 35.0%
GGATTTATCGACCATTAGAT+GGG - chr3_1:76697893-76697912 Msa0376600:CDS 35.0%
!! CTACTTTTAAGCCCATCTAA+TGG + chr3_1:76697907-76697926 None:intergenic 35.0%
! CATTAGATGGGCTTAAAAGT+AGG - chr3_1:76697905-76697924 Msa0376600:CDS 35.0%
ATAATATGTAGGACTGCTGT+AGG + chr3_1:76697940-76697959 None:intergenic 35.0%
ACAGCAGTCCTACATATTAT+TGG - chr3_1:76697940-76697959 Msa0376600:CDS 35.0%
! GTGATTTATGAAATGGACTC+TGG - chr3_1:76697971-76697990 Msa0376600:intron 35.0%
CATATCTTTGGCAATCTGTA+AGG - chr3_1:76698101-76698120 Msa0376600:intron 35.0%
ATGGTTGTCTTGAAATGTTC+AGG - chr3_1:76698182-76698201 Msa0376600:CDS 35.0%
GGAAATGATTAAGAAAGAGG+AGG - chr3_1:76698218-76698237 Msa0376600:CDS 35.0%
TGTAAAGGATAGACAATCCA+AGG - chr3_1:76698254-76698273 Msa0376600:intron 35.0%
ACAATAATGGTACTTCGGTA+AGG + chr3_1:76698302-76698321 None:intergenic 35.0%
! TTACCGAAGTACCATTATTG+TGG - chr3_1:76698301-76698320 Msa0376600:intron 35.0%
CAACCACAATAATGGTACTT+CGG + chr3_1:76698307-76698326 None:intergenic 35.0%
!! ATTTTGCCATGTTTAGGATG+GGG - chr3_1:76698613-76698632 Msa0376600:intron 35.0%
AAACACCAACCACTGATATT+TGG - chr3_1:76698809-76698828 Msa0376600:intron 35.0%
AACACCAACCACTGATATTT+GGG - chr3_1:76698810-76698829 Msa0376600:intron 35.0%
CTTCCATTCACAAAACTTTG+TGG + chr3_1:76698836-76698855 None:intergenic 35.0%
TACAAATGAGAGAGCAAGAA+TGG - chr3_1:76698859-76698878 Msa0376600:intron 35.0%
TCTTAGCTAATGGAAAGCTT+TGG - chr3_1:76698946-76698965 Msa0376600:intron 35.0%
!! CTAATGGAAAGCTTTGGAAT+AGG - chr3_1:76698952-76698971 Msa0376600:intron 35.0%
! TCAGGCATAAAGTCTTTTGA+TGG + chr3_1:76698993-76699012 None:intergenic 35.0%
GTTAGAACAACAAAACTGCA+AGG + chr3_1:76699036-76699055 None:intergenic 35.0%
!!! CAGTTTTGTTGTTCTAACCT+AGG - chr3_1:76699038-76699057 Msa0376600:intron 35.0%
TTCTAACCTAGGAATGATAG+AGG - chr3_1:76699049-76699068 Msa0376600:intron 35.0%
ATTGATCCTCTATCATTCCT+AGG + chr3_1:76699058-76699077 None:intergenic 35.0%
! ATTGGCTTCTTCAATGAATC+TGG + chr3_1:76699206-76699225 None:intergenic 35.0%
TTGAAGAAGCCAATTCATCT+TGG - chr3_1:76699212-76699231 Msa0376600:intron 35.0%
ATCATTGTGCCAAGATGAAT+TGG + chr3_1:76699224-76699243 None:intergenic 35.0%
ATTCATCTTGGCACAATGAT+AGG - chr3_1:76699224-76699243 Msa0376600:intron 35.0%
AATGATAGGAAGTTTAAGCC+AGG - chr3_1:76699238-76699257 Msa0376600:intron 35.0%
ATAGATTCAATTAGCCGCAA+GGG + chr3_1:76699369-76699388 None:intergenic 35.0%
AATAGATTCAATTAGCCGCA+AGG + chr3_1:76699370-76699389 None:intergenic 35.0%
TGCTCATTATTCTTCAACCT+GGG + chr3_1:76699396-76699415 None:intergenic 35.0%
TTGCTCATTATTCTTCAACC+TGG + chr3_1:76699397-76699416 None:intergenic 35.0%
AGGTTGAAGAATAATGAGCA+AGG - chr3_1:76699396-76699415 Msa0376600:CDS 35.0%
GGTTGAAGAATAATGAGCAA+GGG - chr3_1:76699397-76699416 Msa0376600:CDS 35.0%
ATGTAGTCAGATGAATTTCC+AGG + chr3_1:76699500-76699519 None:intergenic 35.0%
!!! ATATTTTTTGAGTGCAGCGT+AGG - chr3_1:76699524-76699543 Msa0376600:CDS 35.0%
!!! TATTTTTTGAGTGCAGCGTA+GGG - chr3_1:76699525-76699544 Msa0376600:CDS 35.0%
GAATAAAAGAAGGTGAGATG+AGG + chr3_1:76699556-76699575 None:intergenic 35.0%
!! GATTCTGTTGGTAGTGTTTC+CGG + chr3_1:76695956-76695975 None:intergenic 40.0%
! CGTCTGAGATTTGATTCTGT+TGG + chr3_1:76695968-76695987 None:intergenic 40.0%
! AAGAGAAACGAAAGCGTACT+TGG + chr3_1:76696099-76696118 None:intergenic 40.0%
CTCTGCTAATGAAACCAAAG+AGG - chr3_1:76696249-76696268 Msa0376600:CDS 40.0%
TACCAGGATGTACTTGAGAT+CGG + chr3_1:76696287-76696306 None:intergenic 40.0%
!! GAAGCATAAGAAGAAGTACC+AGG + chr3_1:76696303-76696322 None:intergenic 40.0%
TTATTGTAATGCGGTCACTG+TGG - chr3_1:76696628-76696647 Msa0376600:intron 40.0%
ATTAATATGGGAAAGCTGGC+TGG - chr3_1:76696968-76696987 Msa0376600:intron 40.0%
!! TGACAGGATACCGATTCTAA+AGG - chr3_1:76697166-76697185 Msa0376600:intron 40.0%
! TAGTGTTGAATTGGGTGTTG+GGG + chr3_1:76697245-76697264 None:intergenic 40.0%
! TATCTCATTTTGTGAGGCGA+TGG - chr3_1:76697352-76697371 Msa0376600:CDS 40.0%
AAAAGCTGTTGCTGATCAGA+GGG - chr3_1:76697421-76697440 Msa0376600:intron 40.0%
! CCAGGCAAAAACACATTTTC+AGG + chr3_1:76697872-76697891 None:intergenic 40.0%
!! CCTGAAAATGTGTTTTTGCC+TGG - chr3_1:76697869-76697888 Msa0376600:CDS 40.0%
!! GAAAATGTGTTTTTGCCTGG+TGG - chr3_1:76697872-76697891 Msa0376600:CDS 40.0%
TAATGGTCGATAAATCCACC+AGG + chr3_1:76697890-76697909 None:intergenic 40.0%
TGGGCTTAAAAGTAGGTTTG+TGG - chr3_1:76697912-76697931 Msa0376600:CDS 40.0%
GGGCTTAAAAGTAGGTTTGT+GGG - chr3_1:76697913-76697932 Msa0376600:CDS 40.0%
!! TTTCTTCTCCTTTTCAGGCT+TGG - chr3_1:76698070-76698089 Msa0376600:intron 40.0%
CTAGTATTCCAAGCCTGAAA+AGG + chr3_1:76698081-76698100 None:intergenic 40.0%
TGTTCAGGCATTTGATCTTC+TGG - chr3_1:76698197-76698216 Msa0376600:CDS 40.0%
TAATGGTACTTCGGTAAGGA+AGG + chr3_1:76698298-76698317 None:intergenic 40.0%
CATCTATATGTCTCAAAGCC+TGG + chr3_1:76698496-76698515 None:intergenic 40.0%
!!! ATGCCAAGCTTCTGCTTTTT+TGG + chr3_1:76698675-76698694 None:intergenic 40.0%
ATATGTACCTATGACTGGGT+TGG + chr3_1:76698898-76698917 None:intergenic 40.0%
GGAAGCAGGACTAAAAGAAA+TGG - chr3_1:76699150-76699169 Msa0376600:intron 40.0%
!! TAGAGCTTTGGATGATTGGA+AGG - chr3_1:76699306-76699325 Msa0376600:CDS 40.0%
ATTGGAAGGATGATAATCCG+CGG - chr3_1:76699320-76699339 Msa0376600:CDS 40.0%
TAGATTCAATTAGCCGCAAG+GGG + chr3_1:76699368-76699387 None:intergenic 40.0%
ATTTGCCATATAGCTCAACC+AGG - chr3_1:76699620-76699639 Msa0376600:five_prime_UTR 40.0%
TTTAAAGGAAATCCCACTCC+TGG + chr3_1:76699641-76699660 None:intergenic 40.0%
TCCATCTTCATCTCACCCAT+CGG + chr3_1:76696004-76696023 None:intergenic 45.0%
! GAAACGAAAGCGTACTTGGT+CGG + chr3_1:76696095-76696114 None:intergenic 45.0%
TGTTCAGGAGCTTGTCAAGA+AGG - chr3_1:76696174-76696193 Msa0376600:three_prime_UTR 45.0%
GTTCAGGAGCTTGTCAAGAA+GGG - chr3_1:76696175-76696194 Msa0376600:three_prime_UTR 45.0%
! GGTTGTGCTGATATCCTCTT+TGG + chr3_1:76696266-76696285 None:intergenic 45.0%
AACCGATCTCAAGTACATCC+TGG - chr3_1:76696282-76696301 Msa0376600:CDS 45.0%
!! TTGTTTTGCTGATAGCCGCA+CGG - chr3_1:76696474-76696493 Msa0376600:intron 45.0%
AGAAACCGAATGCTGAAGCT+TGG - chr3_1:76696569-76696588 Msa0376600:intron 45.0%
GAAACCGAATGCTGAAGCTT+GGG - chr3_1:76696570-76696589 Msa0376600:intron 45.0%
AAACCGAATGCTGAAGCTTG+GGG - chr3_1:76696571-76696590 Msa0376600:intron 45.0%
! GAGATGTTTGGTAGCTTCCA+TGG - chr3_1:76696667-76696686 Msa0376600:intron 45.0%
!! ATCATGAACCATCGGTTCCA+TGG + chr3_1:76696687-76696706 None:intergenic 45.0%
CAAGATAATACGGCACCTGA+GGG + chr3_1:76697118-76697137 None:intergenic 45.0%
! TCTCACCTTCAGTTTTGCCT+GGG + chr3_1:76697195-76697214 None:intergenic 45.0%
GTGAGAGCTGATCTGTTGAA+AGG - chr3_1:76697209-76697228 Msa0376600:intron 45.0%
!! AGTGTTGAATTGGGTGTTGG+GGG + chr3_1:76697244-76697263 None:intergenic 45.0%
! CTCTGATCAGCAACAGCTTT+TGG + chr3_1:76697422-76697441 None:intergenic 45.0%
CAAAAGCTGTTGCTGATCAG+AGG - chr3_1:76697420-76697439 Msa0376600:intron 45.0%
TGACGGAGAAGAAGAAAGAG+AGG - chr3_1:76697774-76697793 Msa0376600:intron 45.0%
GGAGATGCTTTCTGCTGTAA+AGG - chr3_1:76698239-76698258 Msa0376600:intron 45.0%
! TGGGGATCAGGAGTTTTCTA+AGG - chr3_1:76698631-76698650 Msa0376600:intron 45.0%
GTGCCAAAAAAGCAGAAGCT+TGG - chr3_1:76698669-76698688 Msa0376600:intron 45.0%
AAGGTAGCACATGTGATTGG+TGG + chr3_1:76698737-76698756 None:intergenic 45.0%
TACCTTCGCTCAAGATGTTC+TGG - chr3_1:76698751-76698770 Msa0376600:intron 45.0%
TTCCAGAACATCTTGAGCGA+AGG + chr3_1:76698756-76698775 None:intergenic 45.0%
! TTCGCTCAAGATGTTCTGGA+AGG - chr3_1:76698755-76698774 Msa0376600:intron 45.0%
CTTTGTGGCCCAAATATCAG+TGG + chr3_1:76698821-76698840 None:intergenic 45.0%
!! GGGCCACAAAGTTTTGTGAA+TGG - chr3_1:76698830-76698849 Msa0376600:intron 45.0%
GCTTCCTCAATGCTCATAGT+GGG + chr3_1:76699136-76699155 None:intergenic 45.0%
TGCTTCCTCAATGCTCATAG+TGG + chr3_1:76699137-76699156 None:intergenic 45.0%
!! ACTATGAGCATTGAGGAAGC+AGG - chr3_1:76699136-76699155 Msa0376600:intron 45.0%
GAAGTTTAAGCCAGGTGAAG+AGG - chr3_1:76699246-76699265 Msa0376600:intron 45.0%
ACAGGATAGAGCTAGAGCTT+TGG - chr3_1:76699294-76699313 Msa0376600:intron 45.0%
!! GAGCTAGAGCTTTGGATGAT+TGG - chr3_1:76699302-76699321 Msa0376600:CDS 45.0%
TTGGAAGGATGATAATCCGC+GGG - chr3_1:76699321-76699340 Msa0376600:CDS 45.0%
AGGGGTAAGCTTCGAATTTC+CGG + chr3_1:76699350-76699369 None:intergenic 45.0%
AATTCGAAGCTTACCCCTTG+CGG - chr3_1:76699352-76699371 Msa0376600:CDS 45.0%
CATATAGCTCAACCAGGAGT+GGG - chr3_1:76699626-76699645 Msa0376600:five_prime_UTR 45.0%
TCCGATGGGTGAGATGAAGA+TGG - chr3_1:76696000-76696019 Msa0376600:three_prime_UTR 50.0%
GATGGGTGAGATGAAGATGG+AGG - chr3_1:76696003-76696022 Msa0376600:three_prime_UTR 50.0%
!! TGTTCAAACAGCGCCGGTAA+CGG + chr3_1:76696034-76696053 None:intergenic 50.0%
CTTGCTTGTTCAAACAGCGC+CGG + chr3_1:76696040-76696059 None:intergenic 50.0%
! TGTTTTGCTGATAGCCGCAC+GGG - chr3_1:76696475-76696494 Msa0376600:intron 50.0%
ATACTCATTCCCAACCCGTG+CGG + chr3_1:76696492-76696511 None:intergenic 50.0%
CAAGGCTGTGACACCATCTT+CGG - chr3_1:76696519-76696538 Msa0376600:intron 50.0%
CAACCCCAAGCTTCAGCATT+CGG + chr3_1:76696577-76696596 None:intergenic 50.0%
GCAAGATAATACGGCACCTG+AGG + chr3_1:76697119-76697138 None:intergenic 50.0%
! ACCGATTCTAAAGGCTTCCC+AGG - chr3_1:76697175-76697194 Msa0376600:intron 50.0%
!! GCCTGGGAAGCCTTTAGAAT+CGG + chr3_1:76697179-76697198 None:intergenic 50.0%
! CTCTCACCTTCAGTTTTGCC+TGG + chr3_1:76697196-76697215 None:intergenic 50.0%
!! TTGAATTGGGTGTTGGGGGA+AGG + chr3_1:76697240-76697259 None:intergenic 50.0%
! ATTTTGTGAGGCGATGGAGC+TGG - chr3_1:76697358-76697377 Msa0376600:CDS 50.0%
GGCAGGAGAGGAAGAACTAT+TGG - chr3_1:76697747-76697766 Msa0376600:intron 50.0%
!! TGGCATGATGAGCATTGAGC+AGG + chr3_1:76698040-76698059 None:intergenic 50.0%
CCTGATCCCCATCCTAAACA+TGG + chr3_1:76698622-76698641 None:intergenic 50.0%
! CCATGTTTAGGATGGGGATC+AGG - chr3_1:76698619-76698638 Msa0376600:intron 50.0%
GCACATGTGATTGGTGGAGA+TGG + chr3_1:76698731-76698750 None:intergenic 50.0%
GCGAAGGTAGCACATGTGAT+TGG + chr3_1:76698740-76698759 None:intergenic 50.0%
TTTGTGTTCGTGTGCTTGCG+AGG + chr3_1:76698792-76698811 None:intergenic 50.0%
GTGGCCCAAATATCAGTGGT+TGG + chr3_1:76698817-76698836 None:intergenic 50.0%
AGGTCTTCCAACCCAGTCAT+AGG - chr3_1:76698888-76698907 Msa0376600:intron 50.0%
! GATGCCCACTATGAGCATTG+AGG - chr3_1:76699129-76699148 Msa0376600:intron 50.0%
GTTTAAGCCAGGTGAAGAGG+AGG - chr3_1:76699249-76699268 Msa0376600:intron 50.0%
TGAAGATGACGATGCTGCAC+AGG - chr3_1:76699276-76699295 Msa0376600:intron 50.0%
TGGAAGGATGATAATCCGCG+GGG - chr3_1:76699322-76699341 Msa0376600:CDS 50.0%
CCACTCCTGGTTGAGCTATA+TGG + chr3_1:76699628-76699647 None:intergenic 50.0%
CCATATAGCTCAACCAGGAG+TGG - chr3_1:76699625-76699644 Msa0376600:five_prime_UTR 50.0%
GATGGAGGACATGCCGTTAC+CGG - chr3_1:76696018-76696037 Msa0376600:three_prime_UTR 55.0%
CGGCGCTGTTTGAACAAGCA+AGG - chr3_1:76696038-76696057 Msa0376600:three_prime_UTR 55.0%
AAAGCGTACTTGGTCGGCAC+CGG + chr3_1:76696089-76696108 None:intergenic 55.0%
GCTTGTCAAGAAGGGATGCG+AGG - chr3_1:76696183-76696202 Msa0376600:three_prime_UTR 55.0%
!! CGAAGATGGTGTCACAGCCT+TGG + chr3_1:76696521-76696540 None:intergenic 55.0%
GGTAGCTTCCATGGAACCGA+TGG - chr3_1:76696676-76696695 Msa0376600:intron 55.0%
GGCTTCCCAGGCAAAACTGA+AGG - chr3_1:76697187-76697206 Msa0376600:intron 55.0%
GATGGAGCTGGTCCCAAAAG+AGG - chr3_1:76697370-76697389 Msa0376600:CDS 55.0%
TGCTGATCAGAGGGCCAGAA+AGG - chr3_1:76697430-76697449 Msa0376600:intron 55.0%
TTCCTCTCCTGCCTCAACAG+GGG + chr3_1:76697740-76697759 None:intergenic 55.0%
CTTCCTCTCCTGCCTCAACA+GGG + chr3_1:76697741-76697760 None:intergenic 55.0%
TCTTCCTCTCCTGCCTCAAC+AGG + chr3_1:76697742-76697761 None:intergenic 55.0%
GAGAGCAAGAATGGCAGCTC+AGG - chr3_1:76698868-76698887 Msa0376600:intron 55.0%
TAAGCCAGGTGAAGAGGAGG+AGG - chr3_1:76699252-76699271 Msa0376600:intron 55.0%
TCATCCTCCTCCTCTTCACC+TGG + chr3_1:76699259-76699278 None:intergenic 55.0%
TTGCTGATAGCCGCACGGGT+TGG - chr3_1:76696479-76696498 Msa0376600:intron 60.0%
TGCTGATAGCCGCACGGGTT+GGG - chr3_1:76696480-76696499 Msa0376600:intron 60.0%
AACGAGCGAAAGGAACGGCG+TGG - chr3_1:76697685-76697704 Msa0376600:intron 60.0%
ACGAGCGAAAGGAACGGCGT+GGG - chr3_1:76697686-76697705 Msa0376600:intron 60.0%
TGCCTCAACAGGGGTGGACA+GGG + chr3_1:76697731-76697750 None:intergenic 60.0%
GATGATAATCCGCGGGGTGC+CGG - chr3_1:76699328-76699347 Msa0376600:CDS 60.0%
TTCGAATTTCCGGCACCCCG+CGG + chr3_1:76699340-76699359 None:intergenic 60.0%
! TTGGTCGGCACCGGACTCAG+TGG + chr3_1:76696080-76696099 None:intergenic 65.0%
TGCCCTGTCCACCCCTGTTG+AGG - chr3_1:76697726-76697745 Msa0376600:intron 65.0%
CTGCCTCAACAGGGGTGGAC+AGG + chr3_1:76697732-76697751 None:intergenic 65.0%
CTGTCCACCCCTGTTGAGGC+AGG - chr3_1:76697730-76697749 Msa0376600:intron 65.0%
CTCTCCTGCCTCAACAGGGG+TGG + chr3_1:76697737-76697756 None:intergenic 65.0%
CACCCCTGTTGAGGCAGGAG+AGG - chr3_1:76697735-76697754 Msa0376600:intron 65.0%
CACGCCACCGCCACTGAGTC+CGG - chr3_1:76696067-76696086 Msa0376600:three_prime_UTR 70.0%
! GTCGGCACCGGACTCAGTGG+CGG + chr3_1:76696077-76696096 None:intergenic 70.0%
CGGACTCAGTGGCGGTGGCG+TGG + chr3_1:76696069-76696088 None:intergenic 75.0%
! GGCACCGGACTCAGTGGCGG+TGG + chr3_1:76696074-76696093 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 76695928 76699671 76695928 ID=Msa0376600;Name=Msa0376600
chr3_1 mRNA 76695928 76699671 76695928 ID=Msa0376600-mRNA-1;Parent=Msa0376600;Name=Msa0376600-mRNA-1;_AED=0.13;_eAED=0.13;_QI=76|1|1|1|1|1|9|293|403
chr3_1 exon 76695928 76696470 76695928 ID=Msa0376600-mRNA-1:exon:18297;Parent=Msa0376600-mRNA-1
chr3_1 exon 76696690 76696970 76696690 ID=Msa0376600-mRNA-1:exon:18296;Parent=Msa0376600-mRNA-1
chr3_1 exon 76697324 76697395 76697324 ID=Msa0376600-mRNA-1:exon:18295;Parent=Msa0376600-mRNA-1
chr3_1 exon 76697477 76697512 76697477 ID=Msa0376600-mRNA-1:exon:18294;Parent=Msa0376600-mRNA-1
chr3_1 exon 76697804 76697965 76697804 ID=Msa0376600-mRNA-1:exon:18293;Parent=Msa0376600-mRNA-1
chr3_1 exon 76698148 76698252 76698148 ID=Msa0376600-mRNA-1:exon:18292;Parent=Msa0376600-mRNA-1
chr3_1 exon 76698391 76698477 76698391 ID=Msa0376600-mRNA-1:exon:18291;Parent=Msa0376600-mRNA-1
chr3_1 exon 76699296 76699418 76699296 ID=Msa0376600-mRNA-1:exon:18290;Parent=Msa0376600-mRNA-1
chr3_1 exon 76699500 76699671 76699500 ID=Msa0376600-mRNA-1:exon:18289;Parent=Msa0376600-mRNA-1
chr3_1 five_prime_UTR 76699596 76699671 76699596 ID=Msa0376600-mRNA-1:five_prime_utr;Parent=Msa0376600-mRNA-1
chr3_1 CDS 76699500 76699595 76699500 ID=Msa0376600-mRNA-1:cds;Parent=Msa0376600-mRNA-1
chr3_1 CDS 76699296 76699418 76699296 ID=Msa0376600-mRNA-1:cds;Parent=Msa0376600-mRNA-1
chr3_1 CDS 76698391 76698477 76698391 ID=Msa0376600-mRNA-1:cds;Parent=Msa0376600-mRNA-1
chr3_1 CDS 76698148 76698252 76698148 ID=Msa0376600-mRNA-1:cds;Parent=Msa0376600-mRNA-1
chr3_1 CDS 76697804 76697965 76697804 ID=Msa0376600-mRNA-1:cds;Parent=Msa0376600-mRNA-1
chr3_1 CDS 76697477 76697512 76697477 ID=Msa0376600-mRNA-1:cds;Parent=Msa0376600-mRNA-1
chr3_1 CDS 76697324 76697395 76697324 ID=Msa0376600-mRNA-1:cds;Parent=Msa0376600-mRNA-1
chr3_1 CDS 76696690 76696970 76696690 ID=Msa0376600-mRNA-1:cds;Parent=Msa0376600-mRNA-1
chr3_1 CDS 76696221 76696470 76696221 ID=Msa0376600-mRNA-1:cds;Parent=Msa0376600-mRNA-1
chr3_1 three_prime_UTR 76695928 76696220 76695928 ID=Msa0376600-mRNA-1:three_prime_utr;Parent=Msa0376600-mRNA-1
Gene Sequence

>Msa0376600

ATGGGTGAGATGAAGATGGAGGACATGCCGTTACCGGCGCTGTTTGAACAAGCAAGGAAGATCCACGCCACCGCCACTGAGTCCGGTGCCGACCAAGAGCTTGTCAAGAAGGGATGCGAGGCTCTCAATAAATGCGAAAACATGATTAATAGGCTTGGTTTATTCTCTGCTAATGAAACCAAAGAGGATATCAGCACAACCGATCTCAAGTACATCCTGGTGCCGTATTATCTTGCTGAGTTGACCGAGAAAATAGCACATGATGACAGGATACCGATTCTAAAGGCTTCCCAGGCAAAACTGAAGGAATTTATCTCATTTTGTGAGGCGATGGAGCTGGTCCCAAAAGAGGAGTTAGAATCTTATATGCAAGGGGTACCAAAAGCTGTTGCTGATCAGAGGGCCAGAAAGATAGCTAGATTTAAACGACAAAAAGCTGCAGAATCGAAGTTGTTAGAAATAAACGAGCGAAAGGAACGGCGTGGGCGTTCTACTAAAGCAGCTGCCCTGTCCACCCCTGTTGAGGCAGGAGAGGAAGAACTATTGGAAGATGACGGAGAAGAAGAAAGAGAGGCTTGGAATACTAGCATATCTTTGGCAATCTGTAAGGCATTTGATCTTCTGGAAATGATTAAGAAAGAGGAGGAGATGCTTTCTGCTGTAAAGGATAGACAATCCAAGGATGGGGATCAGGAGTTTTCTAAGGATATTATGGATGAACGTGCCAAAAAAGCAGAAGCTTGGCATCGCAATGCTGCAGTTCATGCACAGTATACGAAGCCATCTCCACCAATCACATGTGCTACCTTCGCTCAAGATGTTCTGGAAGGAAGAGCACAAGCCTCGCAAGCACACGAACACAAACACCAACCACTGATATTTGGGCCACAAAGTTTTGTGAATGGAAGTTTTACAAATGAGAGAGCAAGAATGGCAGCTCAGGTCTTCCAACCCAGTCATAGGATGCCCACTATGAGCATTGAGGAAGCAGGACTAAAAGAAATGGAAATTATGAATACATGGCAAGAGAACACTGCCAGATTCATTGAAGAAGCCAATTCATCTTGGCACAATGATAGGAAGTTTAAGCCAGGTGAAGAGGAGGAGGATGAAGATGACGATGCTGCACAGGATAGAGCTAGAGCTTTGGATGATTGGAAGGATGATAATCCGCGGGGTGCCGGAAATTCGAAGCTTACCCCTTGCGGCTAA

Protein sequence

>Msa0376600

MGEMKMEDMPLPALFEQARKIHATATESGADQELVKKGCEALNKCENMINRLGLFSANETKEDISTTDLKYILVPYYLAELTEKIAHDDRIPILKASQAKLKEFISFCEAMELVPKEELESYMQGVPKAVADQRARKIARFKRQKAAESKLLEINERKERRGRSTKAAALSTPVEAGEEELLEDDGEEEREAWNTSISLAICKAFDLLEMIKKEEEMLSAVKDRQSKDGDQEFSKDIMDERAKKAEAWHRNAAVHAQYTKPSPPITCATFAQDVLEGRAQASQAHEHKHQPLIFGPQSFVNGSFTNERARMAAQVFQPSHRMPTMSIEEAGLKEMEIMNTWQENTARFIEEANSSWHNDRKFKPGEEEEDEDDDAAQDRARALDDWKDDNPRGAGNSKLTPCG*